Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952540 | sp|O03982|HIP39_ARATH | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.00e-24 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0952340 | Msa0952540 | 0.826215 | 3.065965e-54 | -8.615850e-47 |
| Msa0952540 | Msa0952560 | 0.993629 | 4.420864e-201 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952540 | MtrunA17_Chr6g0469571 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 8.23e-75 | 218 |
| Msa0952540 | MtrunA17_Chr6g0469551 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 2.97e-74 | 216 |
| Msa0952540 | MtrunA17_Chr6g0469591 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 1.34e-73 | 214 |
| Msa0952540 | MtrunA17_Chr7g0233231 | 57.407 | 108 | 44 | 1 | 1 | 108 | 1 | 106 | 1.27e-38 | 125 |
| Msa0952540 | MtrunA17_Chr6g0469681 | 59.690 | 129 | 45 | 3 | 1 | 124 | 1 | 127 | 2.69e-38 | 125 |
| Msa0952540 | MtrunA17_Chr7g0233211 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 2.03e-37 | 122 |
| Msa0952540 | MtrunA17_Chr1g0202541 | 56.296 | 135 | 47 | 2 | 1 | 123 | 1 | 135 | 5.57e-37 | 122 |
| Msa0952540 | MtrunA17_Chr7g0233251 | 57.018 | 114 | 44 | 2 | 1 | 111 | 1 | 112 | 5.87e-37 | 121 |
| Msa0952540 | MtrunA17_Chr1g0202561 | 52.899 | 138 | 50 | 2 | 1 | 123 | 1 | 138 | 1.24e-36 | 122 |
| Msa0952540 | MtrunA17_Chr7g0233191 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 2.20e-36 | 120 |
| Msa0952540 | MtrunA17_Chr7g0233201 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 4.89e-36 | 119 |
| Msa0952540 | MtrunA17_Chr6g0469541 | 59.813 | 107 | 41 | 2 | 1 | 107 | 1 | 105 | 9.94e-36 | 118 |
| Msa0952540 | MtrunA17_Chr6g0469651 | 55.224 | 134 | 49 | 2 | 1 | 124 | 1 | 133 | 1.04e-35 | 119 |
| Msa0952540 | MtrunA17_Chr7g0233181 | 55.660 | 106 | 45 | 1 | 1 | 106 | 1 | 104 | 3.77e-35 | 117 |
| Msa0952540 | MtrunA17_Chr1g0202581 | 55.556 | 135 | 44 | 3 | 1 | 123 | 1 | 131 | 3.07e-34 | 115 |
| Msa0952540 | MtrunA17_Chr6g0469671 | 78.571 | 70 | 15 | 0 | 1 | 70 | 1 | 70 | 4.38e-34 | 114 |
| Msa0952540 | MtrunA17_Chr8g0387471 | 49.618 | 131 | 55 | 3 | 1 | 124 | 1 | 127 | 2.96e-33 | 112 |
| Msa0952540 | MtrunA17_Chr1g0202501 | 50.000 | 134 | 53 | 3 | 1 | 124 | 1 | 130 | 7.32e-33 | 112 |
| Msa0952540 | MtrunA17_Chr1g0204291 | 51.852 | 135 | 49 | 4 | 1 | 123 | 1 | 131 | 1.14e-32 | 111 |
| Msa0952540 | MtrunA17_Chr7g0248671 | 61.765 | 68 | 26 | 0 | 1 | 68 | 1 | 68 | 6.35e-24 | 90.5 |
| Msa0952540 | MtrunA17_Chr8g0348361 | 39.844 | 128 | 52 | 1 | 22 | 124 | 22 | 149 | 5.36e-15 | 67.0 |
| Msa0952540 | MtrunA17_Chr3g0120541 | 44.444 | 81 | 41 | 4 | 3 | 79 | 5 | 85 | 6.00e-14 | 63.2 |
| Msa0952540 | MtrunA17_Chr5g0404641 | 31.373 | 153 | 73 | 4 | 3 | 123 | 4 | 156 | 2.04e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952540 | AT1G01490.1 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.12e-25 | 93.6 |
| Msa0952540 | AT1G01490.2 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.12e-25 | 93.6 |
| Msa0952540 | AT1G01490.4 | 65.714 | 70 | 23 | 1 | 2 | 70 | 29 | 98 | 2.49e-24 | 92.8 |
| Msa0952540 | AT5G52740.1 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 7.66e-19 | 76.3 |
| Msa0952540 | AT5G52760.1 | 41.176 | 102 | 54 | 3 | 5 | 105 | 7 | 103 | 2.21e-15 | 67.8 |
| Msa0952540 | AT5G52750.1 | 45.455 | 66 | 36 | 0 | 2 | 67 | 4 | 69 | 5.14e-13 | 62.0 |
| Msa0952540 | AT1G63950.2 | 28.000 | 125 | 80 | 2 | 1 | 124 | 1 | 116 | 4.57e-11 | 56.2 |
Find 30 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACAGTCTCTGGCCTTTC+AGG | 0.146342 | 6_3:-47129865 | Msa0952540:intron |
| AACCAACAATTCTGATTTAT+TGG | 0.192934 | 6_3:-47130063 | Msa0952540:five_prime_UTR |
| AGACTTCAAGTAATTGAATT+TGG | 0.223914 | 6_3:+47129315 | None:intergenic |
| GACAAGAAATTAACCTTAAC+TGG | 0.272704 | 6_3:-47129461 | Msa0952540:CDS |
| TTGAAGATGAAAAGAGTTAG+AGG | 0.293857 | 6_3:+47130126 | None:intergenic |
| TGTATTTCTTATACTTTCAA+TGG | 0.370006 | 6_3:+47129043 | None:intergenic |
| ATTTGGTCCTTCTTCACATC+AGG | 0.375669 | 6_3:+47129332 | None:intergenic |
| GACCAATAAATCAGAATTGT+TGG | 0.392701 | 6_3:+47130061 | None:intergenic |
| ATATTCCTCTGTTTCAAGAA+TGG | 0.394512 | 6_3:-47129252 | Msa0952540:CDS |
| TAAAAGAAGAGCTAGGGTAT+TGG | 0.399065 | 6_3:+47130092 | None:intergenic |
| AGTTTGCTTACTACATGAAC+TGG | 0.417883 | 6_3:+47129428 | None:intergenic |
| TGGATCTGTGTCTCCAGTTA+AGG | 0.425183 | 6_3:+47129448 | None:intergenic |
| AGCTTTATTGAAATTAATGA+TGG | 0.446473 | 6_3:-47130031 | Msa0952540:intron |
| TAGTAAGCAAACTAAGGAAA+TGG | 0.458647 | 6_3:-47129418 | Msa0952540:CDS |
| ATGCTGAAATAGTTTCTGTT+GGG | 0.476513 | 6_3:-47129391 | Msa0952540:CDS |
| AAAGCTATGAAGACAGTCTC+TGG | 0.487579 | 6_3:-47129874 | Msa0952540:CDS |
| TACAATTTAAAAGAAGAGCT+AGG | 0.497295 | 6_3:+47130085 | None:intergenic |
| CATGCTGAAATAGTTTCTGT+TGG | 0.500770 | 6_3:-47129392 | Msa0952540:CDS |
| ATCTAAGCCTGATGTGAAGA+AGG | 0.503469 | 6_3:-47129339 | Msa0952540:CDS |
| TTCATGTAGTAAGCAAACTA+AGG | 0.510687 | 6_3:-47129424 | Msa0952540:CDS |
| CAGCATATGACACATCCAAC+AGG | 0.518380 | 6_3:+47129221 | None:intergenic |
| GAGGAATATTGAATATATTG+TGG | 0.535752 | 6_3:+47129266 | None:intergenic |
| ACAATTTAAAAGAAGAGCTA+GGG | 0.536290 | 6_3:+47130086 | None:intergenic |
| TTGTTCCATTCTTGAAACAG+AGG | 0.577364 | 6_3:+47129247 | None:intergenic |
| TGTTCAATTGTGCAAACAGA+GGG | 0.585753 | 6_3:-47129088 | Msa0952540:three_prime_UTR |
| ATTATTTGCAGGGGTAGAGT+CGG | 0.592213 | 6_3:-47129501 | Msa0952540:intron |
| ACATGTCGACATTACCTGAA+AGG | 0.624790 | 6_3:+47129851 | None:intergenic |
| AGAATGGAACAAGATCCTGT+TGG | 0.628668 | 6_3:-47129236 | Msa0952540:CDS |
| TGTTGCATATGATAATAATG+AGG | 0.657518 | 6_3:+47129290 | None:intergenic |
| GTGTTCAATTGTGCAAACAG+AGG | 0.663444 | 6_3:-47129089 | Msa0952540:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTATTTTCATATTATTTAT+TGG | - | chr6_3:47130010-47130029 | Msa0952540:intron | 10.0% |
| !!! | TGTATTTTCATATTATTTAT+TGG | - | chr6_3:47130010-47130029 | Msa0952540:intron | 10.0% |
| !! | AAAAAACTAATAGTAAAAGA+GGG | + | chr6_3:47129201-47129220 | None:intergenic | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | - | chr6_3:47129656-47129675 | Msa0952540:intron | 15.0% |
| !!! | TTTTTATATTGTTTTTTGAG+TGG | - | chr6_3:47130048-47130067 | Msa0952540:five_prime_UTR | 15.0% |
| !! | AAAAAACTAATAGTAAAAGA+GGG | + | chr6_3:47129201-47129220 | None:intergenic | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | - | chr6_3:47129656-47129675 | Msa0952540:intron | 15.0% |
| !!! | TTTTTATATTGTTTTTTGAG+TGG | - | chr6_3:47130048-47130067 | Msa0952540:five_prime_UTR | 15.0% |
| !!! | AGCTTTATTGAAATTAATGA+TGG | - | chr6_3:47129152-47129171 | Msa0952540:three_prime_UTR | 20.0% |
| !! | GAAAAAACTAATAGTAAAAG+AGG | + | chr6_3:47129202-47129221 | None:intergenic | 20.0% |
| !! | TTCACATTATTTAATCTTGA+GGG | - | chr6_3:47129461-47129480 | Msa0952540:CDS | 20.0% |
| !! | TCAAATTATGAGGTTAAAAA+GGG | + | chr6_3:47129503-47129522 | None:intergenic | 20.0% |
| !! | TTCAAATTATGAGGTTAAAA+AGG | + | chr6_3:47129504-47129523 | None:intergenic | 20.0% |
| !! | TAAATGATGTTCAAATTATG+AGG | + | chr6_3:47129513-47129532 | None:intergenic | 20.0% |
| !! | TGTATTTCTTATACTTTCAA+TGG | + | chr6_3:47130143-47130162 | None:intergenic | 20.0% |
| !!! | AGCTTTATTGAAATTAATGA+TGG | - | chr6_3:47129152-47129171 | Msa0952540:three_prime_UTR | 20.0% |
| !! | GAAAAAACTAATAGTAAAAG+AGG | + | chr6_3:47129202-47129221 | None:intergenic | 20.0% |
| !! | TTCACATTATTTAATCTTGA+GGG | - | chr6_3:47129461-47129480 | Msa0952540:CDS | 20.0% |
| !! | TCAAATTATGAGGTTAAAAA+GGG | + | chr6_3:47129503-47129522 | None:intergenic | 20.0% |
| !! | TTCAAATTATGAGGTTAAAA+AGG | + | chr6_3:47129504-47129523 | None:intergenic | 20.0% |
| !! | TAAATGATGTTCAAATTATG+AGG | + | chr6_3:47129513-47129532 | None:intergenic | 20.0% |
| !! | TGTATTTCTTATACTTTCAA+TGG | + | chr6_3:47130143-47130162 | None:intergenic | 20.0% |
| ! | ACAATTTAAAAGAAGAGCTA+GGG | + | chr6_3:47129100-47129119 | None:intergenic | 25.0% |
| ! | TACAATTTAAAAGAAGAGCT+AGG | + | chr6_3:47129101-47129120 | None:intergenic | 25.0% |
| ! | AACCAACAATTCTGATTTAT+TGG | - | chr6_3:47129120-47129139 | Msa0952540:three_prime_UTR | 25.0% |
| !!! | ACATGTCTAGTTTCAATTTT+TGG | - | chr6_3:47129349-47129368 | Msa0952540:CDS | 25.0% |
| ! | CTCAAGATTAAATAATGTGA+AGG | + | chr6_3:47129462-47129481 | None:intergenic | 25.0% |
| ! | CTTCACATTATTTAATCTTG+AGG | - | chr6_3:47129460-47129479 | Msa0952540:CDS | 25.0% |
| !! | TGTATTGGTATATTATTTGC+AGG | - | chr6_3:47129671-47129690 | Msa0952540:intron | 25.0% |
| !! | GTATTGGTATATTATTTGCA+GGG | - | chr6_3:47129672-47129691 | Msa0952540:intron | 25.0% |
| ! | TATTGGTATATTATTTGCAG+GGG | - | chr6_3:47129673-47129692 | Msa0952540:intron | 25.0% |
| ! | AGACTTCAAGTAATTGAATT+TGG | + | chr6_3:47129871-47129890 | None:intergenic | 25.0% |
| ! | TGTTGCATATGATAATAATG+AGG | + | chr6_3:47129896-47129915 | None:intergenic | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | + | chr6_3:47129920-47129939 | None:intergenic | 25.0% |
| ! | ACAATTTAAAAGAAGAGCTA+GGG | + | chr6_3:47129100-47129119 | None:intergenic | 25.0% |
| ! | TACAATTTAAAAGAAGAGCT+AGG | + | chr6_3:47129101-47129120 | None:intergenic | 25.0% |
| ! | AACCAACAATTCTGATTTAT+TGG | - | chr6_3:47129120-47129139 | Msa0952540:three_prime_UTR | 25.0% |
| !!! | ACATGTCTAGTTTCAATTTT+TGG | - | chr6_3:47129349-47129368 | Msa0952540:CDS | 25.0% |
| ! | CTCAAGATTAAATAATGTGA+AGG | + | chr6_3:47129462-47129481 | None:intergenic | 25.0% |
| ! | CTTCACATTATTTAATCTTG+AGG | - | chr6_3:47129460-47129479 | Msa0952540:CDS | 25.0% |
| !! | TGTATTGGTATATTATTTGC+AGG | - | chr6_3:47129671-47129690 | Msa0952540:intron | 25.0% |
| !! | GTATTGGTATATTATTTGCA+GGG | - | chr6_3:47129672-47129691 | Msa0952540:intron | 25.0% |
| ! | TATTGGTATATTATTTGCAG+GGG | - | chr6_3:47129673-47129692 | Msa0952540:intron | 25.0% |
| ! | AGACTTCAAGTAATTGAATT+TGG | + | chr6_3:47129871-47129890 | None:intergenic | 25.0% |
| ! | TGTTGCATATGATAATAATG+AGG | + | chr6_3:47129896-47129915 | None:intergenic | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | + | chr6_3:47129920-47129939 | None:intergenic | 25.0% |
| TTGAAGATGAAAAGAGTTAG+AGG | + | chr6_3:47129060-47129079 | None:intergenic | 30.0% | |
| GACCAATAAATCAGAATTGT+TGG | + | chr6_3:47129125-47129144 | None:intergenic | 30.0% | |
| !!! | GTTACAGAAACTAGTTTTGA+AGG | - | chr6_3:47129257-47129276 | Msa0952540:CDS | 30.0% |
| GACAAGAAATTAACCTTAAC+TGG | - | chr6_3:47129722-47129741 | Msa0952540:intron | 30.0% | |
| TTCATGTAGTAAGCAAACTA+AGG | - | chr6_3:47129759-47129778 | Msa0952540:intron | 30.0% | |
| TAGTAAGCAAACTAAGGAAA+TGG | - | chr6_3:47129765-47129784 | Msa0952540:intron | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | - | chr6_3:47129792-47129811 | Msa0952540:intron | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | + | chr6_3:47129818-47129837 | None:intergenic | 30.0% |
| ATATTCCTCTGTTTCAAGAA+TGG | - | chr6_3:47129931-47129950 | Msa0952540:intron | 30.0% | |
| TTGAAGATGAAAAGAGTTAG+AGG | + | chr6_3:47129060-47129079 | None:intergenic | 30.0% | |
| GACCAATAAATCAGAATTGT+TGG | + | chr6_3:47129125-47129144 | None:intergenic | 30.0% | |
| !!! | GTTACAGAAACTAGTTTTGA+AGG | - | chr6_3:47129257-47129276 | Msa0952540:CDS | 30.0% |
| GACAAGAAATTAACCTTAAC+TGG | - | chr6_3:47129722-47129741 | Msa0952540:intron | 30.0% | |
| TTCATGTAGTAAGCAAACTA+AGG | - | chr6_3:47129759-47129778 | Msa0952540:intron | 30.0% | |
| TAGTAAGCAAACTAAGGAAA+TGG | - | chr6_3:47129765-47129784 | Msa0952540:intron | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | - | chr6_3:47129792-47129811 | Msa0952540:intron | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | + | chr6_3:47129818-47129837 | None:intergenic | 30.0% |
| ATATTCCTCTGTTTCAAGAA+TGG | - | chr6_3:47129931-47129950 | Msa0952540:intron | 30.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | + | chr6_3:47129094-47129113 | None:intergenic | 35.0% | |
| AGTAAAAGAGGGAATTCACA+AGG | + | chr6_3:47129190-47129209 | None:intergenic | 35.0% | |
| !!! | ACAGAAACTAGTTTTGAAGG+TGG | - | chr6_3:47129260-47129279 | Msa0952540:CDS | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | + | chr6_3:47129304-47129323 | None:intergenic | 35.0% |
| ! | AGTTTGCTTACTACATGAAC+TGG | + | chr6_3:47129758-47129777 | None:intergenic | 35.0% |
| CATGCTGAAATAGTTTCTGT+TGG | - | chr6_3:47129791-47129810 | Msa0952540:intron | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | + | chr6_3:47129939-47129958 | None:intergenic | 35.0% | |
| TGTTCAATTGTGCAAACAGA+GGG | - | chr6_3:47130095-47130114 | Msa0952540:five_prime_UTR | 35.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | + | chr6_3:47129094-47129113 | None:intergenic | 35.0% | |
| AGTAAAAGAGGGAATTCACA+AGG | + | chr6_3:47129190-47129209 | None:intergenic | 35.0% | |
| !!! | ACAGAAACTAGTTTTGAAGG+TGG | - | chr6_3:47129260-47129279 | Msa0952540:CDS | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | + | chr6_3:47129304-47129323 | None:intergenic | 35.0% |
| ! | AGTTTGCTTACTACATGAAC+TGG | + | chr6_3:47129758-47129777 | None:intergenic | 35.0% |
| CATGCTGAAATAGTTTCTGT+TGG | - | chr6_3:47129791-47129810 | Msa0952540:intron | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | + | chr6_3:47129939-47129958 | None:intergenic | 35.0% | |
| TGTTCAATTGTGCAAACAGA+GGG | - | chr6_3:47130095-47130114 | Msa0952540:five_prime_UTR | 35.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | - | chr6_3:47129309-47129328 | Msa0952540:CDS | 40.0% | |
| ACATGTCGACATTACCTGAA+AGG | + | chr6_3:47129335-47129354 | None:intergenic | 40.0% | |
| ATTATTTGCAGGGGTAGAGT+CGG | - | chr6_3:47129682-47129701 | Msa0952540:intron | 40.0% | |
| ATCTAAGCCTGATGTGAAGA+AGG | - | chr6_3:47129844-47129863 | Msa0952540:intron | 40.0% | |
| ATTTGGTCCTTCTTCACATC+AGG | + | chr6_3:47129854-47129873 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | - | chr6_3:47129947-47129966 | Msa0952540:intron | 40.0% | |
| GTGTTCAATTGTGCAAACAG+AGG | - | chr6_3:47130094-47130113 | Msa0952540:five_prime_UTR | 40.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | - | chr6_3:47129309-47129328 | Msa0952540:CDS | 40.0% | |
| ACATGTCGACATTACCTGAA+AGG | + | chr6_3:47129335-47129354 | None:intergenic | 40.0% | |
| ATTATTTGCAGGGGTAGAGT+CGG | - | chr6_3:47129682-47129701 | Msa0952540:intron | 40.0% | |
| ATCTAAGCCTGATGTGAAGA+AGG | - | chr6_3:47129844-47129863 | Msa0952540:intron | 40.0% | |
| ATTTGGTCCTTCTTCACATC+AGG | + | chr6_3:47129854-47129873 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | - | chr6_3:47129947-47129966 | Msa0952540:intron | 40.0% | |
| GTGTTCAATTGTGCAAACAG+AGG | - | chr6_3:47130094-47130113 | Msa0952540:five_prime_UTR | 40.0% | |
| GAGGGAATTCACAAGGATCT+AGG | + | chr6_3:47129183-47129202 | None:intergenic | 45.0% | |
| TGGATCTGTGTCTCCAGTTA+AGG | + | chr6_3:47129738-47129757 | None:intergenic | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | + | chr6_3:47129965-47129984 | None:intergenic | 45.0% | |
| GAGGGAATTCACAAGGATCT+AGG | + | chr6_3:47129183-47129202 | None:intergenic | 45.0% | |
| TGGATCTGTGTCTCCAGTTA+AGG | + | chr6_3:47129738-47129757 | None:intergenic | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | + | chr6_3:47129965-47129984 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTAAATTGAAAAA+TGG | + | chr6_3:47129562-47129581 | None:intergenic | 5.0% |
| !!! | TTTATTTTTAAATTGAAAAA+TGG | + | chr6_3:47129562-47129581 | None:intergenic | 5.0% |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | - | chr6_3:47129318-47129337 | Msa0952540:CDS | 50.0% |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | - | chr6_3:47129318-47129337 | Msa0952540:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 47129034 | 47130171 | 47129034 | ID=Msa0952540;Name=Msa0952540 |
| chr6_3 | mRNA | 47129034 | 47130171 | 47129034 | ID=Msa0952540-mRNA-1;Parent=Msa0952540;Name=Msa0952540-mRNA-1;_AED=0.34;_eAED=0.34;_QI=134|1|1|1|1|1|3|186|124 |
| chr6_3 | exon | 47129034 | 47129512 | 47129034 | ID=Msa0952540-mRNA-1:exon:10401;Parent=Msa0952540-mRNA-1 |
| chr6_3 | exon | 47129866 | 47129941 | 47129866 | ID=Msa0952540-mRNA-1:exon:10400;Parent=Msa0952540-mRNA-1 |
| chr6_3 | exon | 47130032 | 47130171 | 47130032 | ID=Msa0952540-mRNA-1:exon:10399;Parent=Msa0952540-mRNA-1 |
| chr6_3 | five_prime_UTR | 47130038 | 47130171 | 47130038 | ID=Msa0952540-mRNA-1:five_prime_utr;Parent=Msa0952540-mRNA-1 |
| chr6_3 | CDS | 47130032 | 47130037 | 47130032 | ID=Msa0952540-mRNA-1:cds;Parent=Msa0952540-mRNA-1 |
| chr6_3 | CDS | 47129866 | 47129941 | 47129866 | ID=Msa0952540-mRNA-1:cds;Parent=Msa0952540-mRNA-1 |
| chr6_3 | CDS | 47129220 | 47129512 | 47129220 | ID=Msa0952540-mRNA-1:cds;Parent=Msa0952540-mRNA-1 |
| chr6_3 | three_prime_UTR | 47129034 | 47129219 | 47129034 | ID=Msa0952540-mRNA-1:three_prime_utr;Parent=Msa0952540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
