Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952560 | sp|O03982|HIP39_ARATH | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.00e-24 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952560 | I3SS97 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 4.28e-71 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0952340 | Msa0952560 | 0.832275 | 1.037531e-55 | -8.615850e-47 |
| Msa0952540 | Msa0952560 | 0.993629 | 4.420864e-201 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952560 | MtrunA17_Chr6g0469571 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 8.23e-75 | 218 |
| Msa0952560 | MtrunA17_Chr6g0469551 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 2.97e-74 | 216 |
| Msa0952560 | MtrunA17_Chr6g0469591 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 1.34e-73 | 214 |
| Msa0952560 | MtrunA17_Chr7g0233231 | 57.407 | 108 | 44 | 1 | 1 | 108 | 1 | 106 | 1.27e-38 | 125 |
| Msa0952560 | MtrunA17_Chr6g0469681 | 59.690 | 129 | 45 | 3 | 1 | 124 | 1 | 127 | 2.69e-38 | 125 |
| Msa0952560 | MtrunA17_Chr7g0233211 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 2.03e-37 | 122 |
| Msa0952560 | MtrunA17_Chr1g0202541 | 56.296 | 135 | 47 | 2 | 1 | 123 | 1 | 135 | 5.57e-37 | 122 |
| Msa0952560 | MtrunA17_Chr7g0233251 | 57.018 | 114 | 44 | 2 | 1 | 111 | 1 | 112 | 5.87e-37 | 121 |
| Msa0952560 | MtrunA17_Chr1g0202561 | 52.899 | 138 | 50 | 2 | 1 | 123 | 1 | 138 | 1.24e-36 | 122 |
| Msa0952560 | MtrunA17_Chr7g0233191 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 2.20e-36 | 120 |
| Msa0952560 | MtrunA17_Chr7g0233201 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 4.89e-36 | 119 |
| Msa0952560 | MtrunA17_Chr6g0469541 | 59.813 | 107 | 41 | 2 | 1 | 107 | 1 | 105 | 9.94e-36 | 118 |
| Msa0952560 | MtrunA17_Chr6g0469651 | 55.224 | 134 | 49 | 2 | 1 | 124 | 1 | 133 | 1.04e-35 | 119 |
| Msa0952560 | MtrunA17_Chr7g0233181 | 55.660 | 106 | 45 | 1 | 1 | 106 | 1 | 104 | 3.77e-35 | 117 |
| Msa0952560 | MtrunA17_Chr1g0202581 | 55.556 | 135 | 44 | 3 | 1 | 123 | 1 | 131 | 3.07e-34 | 115 |
| Msa0952560 | MtrunA17_Chr6g0469671 | 78.571 | 70 | 15 | 0 | 1 | 70 | 1 | 70 | 4.38e-34 | 114 |
| Msa0952560 | MtrunA17_Chr8g0387471 | 49.618 | 131 | 55 | 3 | 1 | 124 | 1 | 127 | 2.96e-33 | 112 |
| Msa0952560 | MtrunA17_Chr1g0202501 | 50.000 | 134 | 53 | 3 | 1 | 124 | 1 | 130 | 7.32e-33 | 112 |
| Msa0952560 | MtrunA17_Chr1g0204291 | 51.852 | 135 | 49 | 4 | 1 | 123 | 1 | 131 | 1.14e-32 | 111 |
| Msa0952560 | MtrunA17_Chr7g0248671 | 61.765 | 68 | 26 | 0 | 1 | 68 | 1 | 68 | 6.35e-24 | 90.5 |
| Msa0952560 | MtrunA17_Chr8g0348361 | 39.844 | 128 | 52 | 1 | 22 | 124 | 22 | 149 | 5.36e-15 | 67.0 |
| Msa0952560 | MtrunA17_Chr3g0120541 | 44.444 | 81 | 41 | 4 | 3 | 79 | 5 | 85 | 6.00e-14 | 63.2 |
| Msa0952560 | MtrunA17_Chr5g0404641 | 31.373 | 153 | 73 | 4 | 3 | 123 | 4 | 156 | 2.04e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952560 | AT1G01490.1 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.12e-25 | 93.6 |
| Msa0952560 | AT1G01490.2 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.12e-25 | 93.6 |
| Msa0952560 | AT1G01490.4 | 65.714 | 70 | 23 | 1 | 2 | 70 | 29 | 98 | 2.49e-24 | 92.8 |
| Msa0952560 | AT5G52740.1 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 7.66e-19 | 76.3 |
| Msa0952560 | AT5G52760.1 | 41.176 | 102 | 54 | 3 | 5 | 105 | 7 | 103 | 2.21e-15 | 67.8 |
| Msa0952560 | AT5G52750.1 | 45.455 | 66 | 36 | 0 | 2 | 67 | 4 | 69 | 5.14e-13 | 62.0 |
| Msa0952560 | AT1G63950.2 | 28.000 | 125 | 80 | 2 | 1 | 124 | 1 | 116 | 4.57e-11 | 56.2 |
Find 30 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACAGTCTCTGGCCTTTC+AGG | 0.146342 | 6_3:-47140488 | Msa0952560:intron |
| AACCAACAATTCTGATTTAT+TGG | 0.192934 | 6_3:-47140686 | Msa0952560:five_prime_UTR |
| AGACTTCAAGTAATTGAATT+TGG | 0.223914 | 6_3:+47139938 | None:intergenic |
| GACAAGAAATTAACCTTAAC+TGG | 0.272704 | 6_3:-47140084 | Msa0952560:CDS |
| TTGAAGATGAAAAGAGTTAG+AGG | 0.293857 | 6_3:+47140749 | None:intergenic |
| TGTATTTCTTATACTTTCAA+TGG | 0.370006 | 6_3:+47139666 | None:intergenic |
| ATTTGGTCCTTCTTCACATC+AGG | 0.375669 | 6_3:+47139955 | None:intergenic |
| GACCAATAAATCAGAATTGT+TGG | 0.392701 | 6_3:+47140684 | None:intergenic |
| ATATTCCTCTGTTTCAAGAA+TGG | 0.394512 | 6_3:-47139875 | Msa0952560:CDS |
| TAAAAGAAGAGCTAGGGTAT+TGG | 0.399065 | 6_3:+47140715 | None:intergenic |
| AGTTTGCTTACTACATGAAC+TGG | 0.417883 | 6_3:+47140051 | None:intergenic |
| TGGATCTGTGTCTCCAGTTA+AGG | 0.425183 | 6_3:+47140071 | None:intergenic |
| AGCTTTATTGAAATTAATGA+TGG | 0.446473 | 6_3:-47140654 | Msa0952560:intron |
| TAGTAAGCAAACTAAGGAAA+TGG | 0.458647 | 6_3:-47140041 | Msa0952560:CDS |
| ATGCTGAAATAGTTTCTGTT+GGG | 0.476513 | 6_3:-47140014 | Msa0952560:CDS |
| AAAGCTATGAAGACAGTCTC+TGG | 0.487579 | 6_3:-47140497 | Msa0952560:CDS |
| TACAATTTAAAAGAAGAGCT+AGG | 0.497295 | 6_3:+47140708 | None:intergenic |
| CATGCTGAAATAGTTTCTGT+TGG | 0.500770 | 6_3:-47140015 | Msa0952560:CDS |
| ATCTAAGCCTGATGTGAAGA+AGG | 0.503469 | 6_3:-47139962 | Msa0952560:CDS |
| TTCATGTAGTAAGCAAACTA+AGG | 0.510687 | 6_3:-47140047 | Msa0952560:CDS |
| CAGCATATGACACATCCAAC+AGG | 0.518380 | 6_3:+47139844 | None:intergenic |
| GAGGAATATTGAATATATTG+TGG | 0.535752 | 6_3:+47139889 | None:intergenic |
| ACAATTTAAAAGAAGAGCTA+GGG | 0.536290 | 6_3:+47140709 | None:intergenic |
| TTGTTCCATTCTTGAAACAG+AGG | 0.577364 | 6_3:+47139870 | None:intergenic |
| TGTTCAATTGTGCAAACAGA+GGG | 0.585753 | 6_3:-47139711 | Msa0952560:three_prime_UTR |
| ATTATTTGCAGGGGTAGAGT+CGG | 0.592213 | 6_3:-47140124 | Msa0952560:intron |
| ACATGTCGACATTACCTGAA+AGG | 0.624790 | 6_3:+47140474 | None:intergenic |
| AGAATGGAACAAGATCCTGT+TGG | 0.628668 | 6_3:-47139859 | Msa0952560:CDS |
| TGTTGCATATGATAATAATG+AGG | 0.657518 | 6_3:+47139913 | None:intergenic |
| GTGTTCAATTGTGCAAACAG+AGG | 0.663444 | 6_3:-47139712 | Msa0952560:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTATTTTCATATTATTTAT+TGG | - | chr6_3:47140633-47140652 | Msa0952560:intron | 10.0% |
| !!! | TGTATTTTCATATTATTTAT+TGG | - | chr6_3:47140633-47140652 | Msa0952560:intron | 10.0% |
| !! | AAAAAACTAATAGTAAAAGA+GGG | + | chr6_3:47139824-47139843 | None:intergenic | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | - | chr6_3:47140279-47140298 | Msa0952560:intron | 15.0% |
| !!! | TTTTTATATTGTTTTTTGAG+TGG | - | chr6_3:47140671-47140690 | Msa0952560:five_prime_UTR | 15.0% |
| !! | AAAAAACTAATAGTAAAAGA+GGG | + | chr6_3:47139824-47139843 | None:intergenic | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | - | chr6_3:47140279-47140298 | Msa0952560:intron | 15.0% |
| !!! | TTTTTATATTGTTTTTTGAG+TGG | - | chr6_3:47140671-47140690 | Msa0952560:five_prime_UTR | 15.0% |
| !!! | AGCTTTATTGAAATTAATGA+TGG | - | chr6_3:47139775-47139794 | Msa0952560:three_prime_UTR | 20.0% |
| !! | GAAAAAACTAATAGTAAAAG+AGG | + | chr6_3:47139825-47139844 | None:intergenic | 20.0% |
| !! | TTCACATTATTTAATCTTGA+GGG | - | chr6_3:47140084-47140103 | Msa0952560:CDS | 20.0% |
| !! | TCAAATTATGAGGTTAAAAA+GGG | + | chr6_3:47140126-47140145 | None:intergenic | 20.0% |
| !! | TTCAAATTATGAGGTTAAAA+AGG | + | chr6_3:47140127-47140146 | None:intergenic | 20.0% |
| !! | TAAATGATGTTCAAATTATG+AGG | + | chr6_3:47140136-47140155 | None:intergenic | 20.0% |
| !! | TGTATTTCTTATACTTTCAA+TGG | + | chr6_3:47140766-47140785 | None:intergenic | 20.0% |
| !!! | AGCTTTATTGAAATTAATGA+TGG | - | chr6_3:47139775-47139794 | Msa0952560:three_prime_UTR | 20.0% |
| !! | GAAAAAACTAATAGTAAAAG+AGG | + | chr6_3:47139825-47139844 | None:intergenic | 20.0% |
| !! | TTCACATTATTTAATCTTGA+GGG | - | chr6_3:47140084-47140103 | Msa0952560:CDS | 20.0% |
| !! | TCAAATTATGAGGTTAAAAA+GGG | + | chr6_3:47140126-47140145 | None:intergenic | 20.0% |
| !! | TTCAAATTATGAGGTTAAAA+AGG | + | chr6_3:47140127-47140146 | None:intergenic | 20.0% |
| !! | TAAATGATGTTCAAATTATG+AGG | + | chr6_3:47140136-47140155 | None:intergenic | 20.0% |
| !! | TGTATTTCTTATACTTTCAA+TGG | + | chr6_3:47140766-47140785 | None:intergenic | 20.0% |
| ! | ACAATTTAAAAGAAGAGCTA+GGG | + | chr6_3:47139723-47139742 | None:intergenic | 25.0% |
| ! | TACAATTTAAAAGAAGAGCT+AGG | + | chr6_3:47139724-47139743 | None:intergenic | 25.0% |
| ! | AACCAACAATTCTGATTTAT+TGG | - | chr6_3:47139743-47139762 | Msa0952560:three_prime_UTR | 25.0% |
| !!! | ACATGTCTAGTTTCAATTTT+TGG | - | chr6_3:47139972-47139991 | Msa0952560:CDS | 25.0% |
| ! | CTCAAGATTAAATAATGTGA+AGG | + | chr6_3:47140085-47140104 | None:intergenic | 25.0% |
| ! | CTTCACATTATTTAATCTTG+AGG | - | chr6_3:47140083-47140102 | Msa0952560:CDS | 25.0% |
| !! | TGTATTGGTATATTATTTGC+AGG | - | chr6_3:47140294-47140313 | Msa0952560:intron | 25.0% |
| !! | GTATTGGTATATTATTTGCA+GGG | - | chr6_3:47140295-47140314 | Msa0952560:intron | 25.0% |
| ! | TATTGGTATATTATTTGCAG+GGG | - | chr6_3:47140296-47140315 | Msa0952560:intron | 25.0% |
| ! | AGACTTCAAGTAATTGAATT+TGG | + | chr6_3:47140494-47140513 | None:intergenic | 25.0% |
| ! | TGTTGCATATGATAATAATG+AGG | + | chr6_3:47140519-47140538 | None:intergenic | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | + | chr6_3:47140543-47140562 | None:intergenic | 25.0% |
| ! | ACAATTTAAAAGAAGAGCTA+GGG | + | chr6_3:47139723-47139742 | None:intergenic | 25.0% |
| ! | TACAATTTAAAAGAAGAGCT+AGG | + | chr6_3:47139724-47139743 | None:intergenic | 25.0% |
| ! | AACCAACAATTCTGATTTAT+TGG | - | chr6_3:47139743-47139762 | Msa0952560:three_prime_UTR | 25.0% |
| !!! | ACATGTCTAGTTTCAATTTT+TGG | - | chr6_3:47139972-47139991 | Msa0952560:CDS | 25.0% |
| ! | CTCAAGATTAAATAATGTGA+AGG | + | chr6_3:47140085-47140104 | None:intergenic | 25.0% |
| ! | CTTCACATTATTTAATCTTG+AGG | - | chr6_3:47140083-47140102 | Msa0952560:CDS | 25.0% |
| !! | TGTATTGGTATATTATTTGC+AGG | - | chr6_3:47140294-47140313 | Msa0952560:intron | 25.0% |
| !! | GTATTGGTATATTATTTGCA+GGG | - | chr6_3:47140295-47140314 | Msa0952560:intron | 25.0% |
| ! | TATTGGTATATTATTTGCAG+GGG | - | chr6_3:47140296-47140315 | Msa0952560:intron | 25.0% |
| ! | AGACTTCAAGTAATTGAATT+TGG | + | chr6_3:47140494-47140513 | None:intergenic | 25.0% |
| ! | TGTTGCATATGATAATAATG+AGG | + | chr6_3:47140519-47140538 | None:intergenic | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | + | chr6_3:47140543-47140562 | None:intergenic | 25.0% |
| TTGAAGATGAAAAGAGTTAG+AGG | + | chr6_3:47139683-47139702 | None:intergenic | 30.0% | |
| GACCAATAAATCAGAATTGT+TGG | + | chr6_3:47139748-47139767 | None:intergenic | 30.0% | |
| !!! | GTTACAGAAACTAGTTTTGA+AGG | - | chr6_3:47139880-47139899 | Msa0952560:CDS | 30.0% |
| GACAAGAAATTAACCTTAAC+TGG | - | chr6_3:47140345-47140364 | Msa0952560:intron | 30.0% | |
| TTCATGTAGTAAGCAAACTA+AGG | - | chr6_3:47140382-47140401 | Msa0952560:intron | 30.0% | |
| TAGTAAGCAAACTAAGGAAA+TGG | - | chr6_3:47140388-47140407 | Msa0952560:intron | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | - | chr6_3:47140415-47140434 | Msa0952560:intron | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | + | chr6_3:47140441-47140460 | None:intergenic | 30.0% |
| ATATTCCTCTGTTTCAAGAA+TGG | - | chr6_3:47140554-47140573 | Msa0952560:intron | 30.0% | |
| TTGAAGATGAAAAGAGTTAG+AGG | + | chr6_3:47139683-47139702 | None:intergenic | 30.0% | |
| GACCAATAAATCAGAATTGT+TGG | + | chr6_3:47139748-47139767 | None:intergenic | 30.0% | |
| !!! | GTTACAGAAACTAGTTTTGA+AGG | - | chr6_3:47139880-47139899 | Msa0952560:CDS | 30.0% |
| GACAAGAAATTAACCTTAAC+TGG | - | chr6_3:47140345-47140364 | Msa0952560:intron | 30.0% | |
| TTCATGTAGTAAGCAAACTA+AGG | - | chr6_3:47140382-47140401 | Msa0952560:intron | 30.0% | |
| TAGTAAGCAAACTAAGGAAA+TGG | - | chr6_3:47140388-47140407 | Msa0952560:intron | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | - | chr6_3:47140415-47140434 | Msa0952560:intron | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | + | chr6_3:47140441-47140460 | None:intergenic | 30.0% |
| ATATTCCTCTGTTTCAAGAA+TGG | - | chr6_3:47140554-47140573 | Msa0952560:intron | 30.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | + | chr6_3:47139717-47139736 | None:intergenic | 35.0% | |
| AGTAAAAGAGGGAATTCACA+AGG | + | chr6_3:47139813-47139832 | None:intergenic | 35.0% | |
| !!! | ACAGAAACTAGTTTTGAAGG+TGG | - | chr6_3:47139883-47139902 | Msa0952560:CDS | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | + | chr6_3:47139927-47139946 | None:intergenic | 35.0% |
| ! | AGTTTGCTTACTACATGAAC+TGG | + | chr6_3:47140381-47140400 | None:intergenic | 35.0% |
| CATGCTGAAATAGTTTCTGT+TGG | - | chr6_3:47140414-47140433 | Msa0952560:intron | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | + | chr6_3:47140562-47140581 | None:intergenic | 35.0% | |
| TGTTCAATTGTGCAAACAGA+GGG | - | chr6_3:47140718-47140737 | Msa0952560:five_prime_UTR | 35.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | + | chr6_3:47139717-47139736 | None:intergenic | 35.0% | |
| AGTAAAAGAGGGAATTCACA+AGG | + | chr6_3:47139813-47139832 | None:intergenic | 35.0% | |
| !!! | ACAGAAACTAGTTTTGAAGG+TGG | - | chr6_3:47139883-47139902 | Msa0952560:CDS | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | + | chr6_3:47139927-47139946 | None:intergenic | 35.0% |
| ! | AGTTTGCTTACTACATGAAC+TGG | + | chr6_3:47140381-47140400 | None:intergenic | 35.0% |
| CATGCTGAAATAGTTTCTGT+TGG | - | chr6_3:47140414-47140433 | Msa0952560:intron | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | + | chr6_3:47140562-47140581 | None:intergenic | 35.0% | |
| TGTTCAATTGTGCAAACAGA+GGG | - | chr6_3:47140718-47140737 | Msa0952560:five_prime_UTR | 35.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | - | chr6_3:47139932-47139951 | Msa0952560:CDS | 40.0% | |
| ACATGTCGACATTACCTGAA+AGG | + | chr6_3:47139958-47139977 | None:intergenic | 40.0% | |
| ATTATTTGCAGGGGTAGAGT+CGG | - | chr6_3:47140305-47140324 | Msa0952560:intron | 40.0% | |
| ATCTAAGCCTGATGTGAAGA+AGG | - | chr6_3:47140467-47140486 | Msa0952560:intron | 40.0% | |
| ATTTGGTCCTTCTTCACATC+AGG | + | chr6_3:47140477-47140496 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | - | chr6_3:47140570-47140589 | Msa0952560:intron | 40.0% | |
| GTGTTCAATTGTGCAAACAG+AGG | - | chr6_3:47140717-47140736 | Msa0952560:five_prime_UTR | 40.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | - | chr6_3:47139932-47139951 | Msa0952560:CDS | 40.0% | |
| ACATGTCGACATTACCTGAA+AGG | + | chr6_3:47139958-47139977 | None:intergenic | 40.0% | |
| ATTATTTGCAGGGGTAGAGT+CGG | - | chr6_3:47140305-47140324 | Msa0952560:intron | 40.0% | |
| ATCTAAGCCTGATGTGAAGA+AGG | - | chr6_3:47140467-47140486 | Msa0952560:intron | 40.0% | |
| ATTTGGTCCTTCTTCACATC+AGG | + | chr6_3:47140477-47140496 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | - | chr6_3:47140570-47140589 | Msa0952560:intron | 40.0% | |
| GTGTTCAATTGTGCAAACAG+AGG | - | chr6_3:47140717-47140736 | Msa0952560:five_prime_UTR | 40.0% | |
| GAGGGAATTCACAAGGATCT+AGG | + | chr6_3:47139806-47139825 | None:intergenic | 45.0% | |
| TGGATCTGTGTCTCCAGTTA+AGG | + | chr6_3:47140361-47140380 | None:intergenic | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | + | chr6_3:47140588-47140607 | None:intergenic | 45.0% | |
| GAGGGAATTCACAAGGATCT+AGG | + | chr6_3:47139806-47139825 | None:intergenic | 45.0% | |
| TGGATCTGTGTCTCCAGTTA+AGG | + | chr6_3:47140361-47140380 | None:intergenic | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | + | chr6_3:47140588-47140607 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTAAATTGAAAAA+TGG | + | chr6_3:47140185-47140204 | None:intergenic | 5.0% |
| !!! | TTTATTTTTAAATTGAAAAA+TGG | + | chr6_3:47140185-47140204 | None:intergenic | 5.0% |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | - | chr6_3:47139941-47139960 | Msa0952560:CDS | 50.0% |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | - | chr6_3:47139941-47139960 | Msa0952560:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 47139657 | 47140794 | 47139657 | ID=Msa0952560;Name=Msa0952560 |
| chr6_3 | mRNA | 47139657 | 47140794 | 47139657 | ID=Msa0952560-mRNA-1;Parent=Msa0952560;Name=Msa0952560-mRNA-1;_AED=0.34;_eAED=0.34;_QI=134|1|1|1|1|1|3|186|124 |
| chr6_3 | exon | 47139657 | 47140135 | 47139657 | ID=Msa0952560-mRNA-1:exon:10404;Parent=Msa0952560-mRNA-1 |
| chr6_3 | exon | 47140489 | 47140564 | 47140489 | ID=Msa0952560-mRNA-1:exon:10403;Parent=Msa0952560-mRNA-1 |
| chr6_3 | exon | 47140655 | 47140794 | 47140655 | ID=Msa0952560-mRNA-1:exon:10402;Parent=Msa0952560-mRNA-1 |
| chr6_3 | five_prime_UTR | 47140661 | 47140794 | 47140661 | ID=Msa0952560-mRNA-1:five_prime_utr;Parent=Msa0952560-mRNA-1 |
| chr6_3 | CDS | 47140655 | 47140660 | 47140655 | ID=Msa0952560-mRNA-1:cds;Parent=Msa0952560-mRNA-1 |
| chr6_3 | CDS | 47140489 | 47140564 | 47140489 | ID=Msa0952560-mRNA-1:cds;Parent=Msa0952560-mRNA-1 |
| chr6_3 | CDS | 47139843 | 47140135 | 47139843 | ID=Msa0952560-mRNA-1:cds;Parent=Msa0952560-mRNA-1 |
| chr6_3 | three_prime_UTR | 47139657 | 47139842 | 47139657 | ID=Msa0952560-mRNA-1:three_prime_utr;Parent=Msa0952560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
