Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952620 | KEH26596.1 | 70.455 | 44 | 13 | 0 | 59 | 102 | 3 | 46 | 2.69e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0872150 | Msa0952620 | 0.856032 | 4.231348e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952620 | MtrunA17_Chr1g0206481 | 45.614 | 57 | 30 | 1 | 55 | 110 | 2 | 58 | 1.46e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATTGAGTTGGCTTTAA+AGG | 0.220667 | 6_3:+47446604 | Msa0952620:CDS |
| ATTTCAGATTCAGTCATCTT+TGG | 0.283107 | 6_3:-47446572 | None:intergenic |
| AAGAGAAACCACACCGGAAC+TGG | 0.370310 | 6_3:+47445409 | Msa0952620:five_prime_UTR |
| TAGCCTTCATATGCTCTTGC+TGG | 0.377920 | 6_3:+47446682 | Msa0952620:CDS |
| ATCCAATCCTCGACTCAATT+CGG | 0.383316 | 6_3:+47445505 | Msa0952620:CDS |
| TCGAGGATTGGATTCGTATT+CGG | 0.383722 | 6_3:-47445495 | None:intergenic |
| ACAGGATGAAGGAGAGAGAA+GGG | 0.401546 | 6_3:+47445687 | Msa0952620:intron |
| ATCTGCTGCGGTGCCAGTTC+CGG | 0.402583 | 6_3:-47445422 | None:intergenic |
| TCATCAGGATTGTTTCGATC+AGG | 0.419506 | 6_3:-47446653 | None:intergenic |
| GAGAGAAGGGTAGGGCAAGA+AGG | 0.440573 | 6_3:+47445700 | Msa0952620:CDS |
| TACCGAATTGAGTCGAGGAT+TGG | 0.448746 | 6_3:-47445507 | None:intergenic |
| TATGCTCTTGCTGGATGAAA+AGG | 0.453941 | 6_3:+47446691 | Msa0952620:CDS |
| TTTATGGTATTACAGGATGA+AGG | 0.496278 | 6_3:+47445676 | Msa0952620:intron |
| TGAAGGCTACCCTCTTCATC+AGG | 0.497260 | 6_3:-47446668 | None:intergenic |
| TCGAAACAATCCTGATGAAG+AGG | 0.497596 | 6_3:+47446658 | Msa0952620:CDS |
| TAATCTATTCAGAGATCAAT+CGG | 0.497849 | 6_3:+47445451 | Msa0952620:CDS |
| TACAGGATGAAGGAGAGAGA+AGG | 0.512929 | 6_3:+47445686 | Msa0952620:intron |
| GATGAAGGAGAGAGAAGGGT+AGG | 0.529746 | 6_3:+47445691 | Msa0952620:CDS |
| CATCCAGCAAGAGCATATGA+AGG | 0.543735 | 6_3:-47446685 | None:intergenic |
| TTCGATCAGGAATACTCCAC+AGG | 0.549838 | 6_3:-47446640 | None:intergenic |
| ATTCAGAGATCAATCGGAAG+AGG | 0.569947 | 6_3:+47445457 | Msa0952620:CDS |
| GAAGAAGAAGTAGAGAGTGA+AGG | 0.574931 | 6_3:+47445742 | Msa0952620:CDS |
| ATGAAGGAGAGAGAAGGGTA+GGG | 0.580265 | 6_3:+47445692 | Msa0952620:CDS |
| AGCATAAAAGAGCAGCGGAT+GGG | 0.582214 | 6_3:+47447799 | Msa0952620:CDS |
| AGGGTAGGGCAAGAAGGTGA+AGG | 0.585834 | 6_3:+47445706 | Msa0952620:CDS |
| CGAAACAATCCTGATGAAGA+GGG | 0.594893 | 6_3:+47446659 | Msa0952620:CDS |
| GAGCATAAAAGAGCAGCGGA+TGG | 0.604432 | 6_3:+47447798 | Msa0952620:CDS |
| GGGCAAGAAGGTGAAGGACA+AGG | 0.613410 | 6_3:+47445712 | Msa0952620:CDS |
| CAAGTGTGGGAAGATTGAGT+TGG | 0.630943 | 6_3:+47446595 | Msa0952620:CDS |
| ACTGAATCTGAAATCAAGTG+TGG | 0.640389 | 6_3:+47446581 | Msa0952620:CDS |
| CTGAATCTGAAATCAAGTGT+GGG | 0.650456 | 6_3:+47446582 | Msa0952620:CDS |
| AATCTTACCGAATTGAGTCG+AGG | 0.654505 | 6_3:-47445512 | None:intergenic |
| CTGCGGTGCCAGTTCCGGTG+TGG | 0.658353 | 6_3:-47445417 | None:intergenic |
| GATCAGGAATACTCCACAGG+TGG | 0.658943 | 6_3:-47446637 | None:intergenic |
| AGATTATGCATCATCTGCTG+CGG | 0.660899 | 6_3:-47445434 | None:intergenic |
| AGGCTAGAGTCATCCACCTG+TGG | 0.673172 | 6_3:+47446624 | Msa0952620:CDS |
| GAAGGAGCATAAAAGAGCAG+CGG | 0.692231 | 6_3:+47447794 | Msa0952620:intron |
| CGGGAGAAGAGAAACCACAC+CGG | 0.722759 | 6_3:+47445403 | Msa0952620:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATCAAAATCTATAAA+TGG | - | chr6_3:47445976-47445995 | None:intergenic | 10.0% |
| !! | TTTCATTATTGAAATAAAAA+GGG | - | chr6_3:47446748-47446767 | None:intergenic | 10.0% |
| !!! | ATCATATTTGAAATTTGAAA+TGG | + | chr6_3:47445649-47445668 | Msa0952620:intron | 15.0% |
| !!! | AACTAAAACATAATTTTATC+AGG | - | chr6_3:47445837-47445856 | None:intergenic | 15.0% |
| !! | AATAGAATAGATATGAAATT+AGG | - | chr6_3:47446718-47446737 | None:intergenic | 15.0% |
| !! | GTTTCATTATTGAAATAAAA+AGG | - | chr6_3:47446749-47446768 | None:intergenic | 15.0% |
| !! | TAAATATGTGAATCTTTAAA+TGG | + | chr6_3:47446769-47446788 | Msa0952620:intron | 15.0% |
| !! | TATAAATAATTGTTGAGATT+TGG | + | chr6_3:47446973-47446992 | Msa0952620:intron | 15.0% |
| !!! | TGTTTTTTTTTTGTCAATTT+AGG | + | chr6_3:47446997-47447016 | Msa0952620:intron | 15.0% |
| !!! | GTTTTTTTTTTGTCAATTTA+GGG | + | chr6_3:47446998-47447017 | Msa0952620:intron | 15.0% |
| !!! | TTTTTTTTTTGTCAATTTAG+GGG | + | chr6_3:47446999-47447018 | Msa0952620:intron | 15.0% |
| !! | AAAACTAACAAAGTAAAAAA+TGG | - | chr6_3:47447031-47447050 | None:intergenic | 15.0% |
| !! | TCATAACATTATACAATATA+TGG | + | chr6_3:47447435-47447454 | Msa0952620:intron | 15.0% |
| !! | CTATTAAAAAGTGATTAAAT+TGG | - | chr6_3:47447481-47447500 | None:intergenic | 15.0% |
| !! | AAAGACATTTAGAAATTAAT+TGG | - | chr6_3:47447526-47447545 | None:intergenic | 15.0% |
| !!! | AATTTCTAAATGTCTTTTTA+AGG | + | chr6_3:47447529-47447548 | Msa0952620:intron | 15.0% |
| !! | TGAAAACAAAAATTATCAAA+AGG | - | chr6_3:47447568-47447587 | None:intergenic | 15.0% |
| !!! | ATATAATTTATGTTTGCTTT+TGG | + | chr6_3:47447765-47447784 | Msa0952620:intron | 15.0% |
| !!! | TATTAGTTTGTTTATGCATT+TGG | + | chr6_3:47445623-47445642 | Msa0952620:intron | 20.0% |
| !!! | AATTTGAAATGGTGAATTTA+TGG | + | chr6_3:47445660-47445679 | Msa0952620:intron | 20.0% |
| !! | GAACAAAACAATTATAGAAT+GGG | - | chr6_3:47445866-47445885 | None:intergenic | 20.0% |
| !! | AGAACAAAACAATTATAGAA+TGG | - | chr6_3:47445867-47445886 | None:intergenic | 20.0% |
| !!! | TACAGTTTCATATTTTTTGA+AGG | - | chr6_3:47446019-47446038 | None:intergenic | 20.0% |
| !! | AAATAAATGCATAAAGAAGA+AGG | - | chr6_3:47446164-47446183 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGAATTTAGATTT+AGG | + | chr6_3:47446304-47446323 | Msa0952620:intron | 20.0% |
| !! | AATAATGTAGAATTTCCATA+AGG | - | chr6_3:47446488-47446507 | None:intergenic | 20.0% |
| !! | AAATGTAAGAATGTATAACA+TGG | - | chr6_3:47446914-47446933 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTCAATTTAGG+GGG | + | chr6_3:47447000-47447019 | Msa0952620:intron | 20.0% |
| !! | ATTGTTACATCTTACATTAT+AGG | + | chr6_3:47447075-47447094 | Msa0952620:intron | 20.0% |
| !! | TTGTTACATCTTACATTATA+GGG | + | chr6_3:47447076-47447095 | Msa0952620:intron | 20.0% |
| !! | TAATGTTATGAAAGATCTAA+TGG | - | chr6_3:47447426-47447445 | None:intergenic | 20.0% |
| !! | GAAAGAGAAATTTAATAAAG+GGG | - | chr6_3:47447504-47447523 | None:intergenic | 20.0% |
| !! | GGAAAGAGAAATTTAATAAA+GGG | - | chr6_3:47447505-47447524 | None:intergenic | 20.0% |
| !! | TGGAAAGAGAAATTTAATAA+AGG | - | chr6_3:47447506-47447525 | None:intergenic | 20.0% |
| !! | ATATGAATTAGAAATTGACA+AGG | + | chr6_3:47447666-47447685 | Msa0952620:intron | 20.0% |
| !!! | ACACATTTTTTCAGTTCAAT+CGG | + | chr6_3:47445383-47445402 | Msa0952620:five_prime_UTR | 25.0% |
| ! | TAATCTATTCAGAGATCAAT+CGG | + | chr6_3:47445451-47445470 | Msa0952620:CDS | 25.0% |
| ! | ACAAAATTTGAATGAAGCTA+GGG | - | chr6_3:47445578-47445597 | None:intergenic | 25.0% |
| !!! | TCTCTTCTTCTGTTTTTTTT+TGG | + | chr6_3:47445896-47445915 | Msa0952620:intron | 25.0% |
| !!! | CTCTTCTTCTGTTTTTTTTT+GGG | + | chr6_3:47445897-47445916 | Msa0952620:intron | 25.0% |
| ! | ATATAGAAGTAGCTTCAAAA+TGG | + | chr6_3:47445925-47445944 | Msa0952620:intron | 25.0% |
| ! | TATGTCTTATATGTGTTGAA+AGG | + | chr6_3:47446454-47446473 | Msa0952620:intron | 25.0% |
| !!! | CGTTTCAATTTTTTCATCAA+TGG | + | chr6_3:47446824-47446843 | Msa0952620:intron | 25.0% |
| ! | TCTTACATTATAGGGTTATT+TGG | + | chr6_3:47447084-47447103 | Msa0952620:intron | 25.0% |
| ! | AGAAATAAAAACTCATGTCA+TGG | - | chr6_3:47447259-47447278 | None:intergenic | 25.0% |
| ! | AGTTAATATCATATATGGTC+AGG | - | chr6_3:47447311-47447330 | None:intergenic | 25.0% |
| ! | GACAGAGTTAATATCATATA+TGG | - | chr6_3:47447316-47447335 | None:intergenic | 25.0% |
| ! | TGATATATAGCAACATTGAT+TGG | + | chr6_3:47447347-47447366 | Msa0952620:intron | 25.0% |
| !! | GATATATAGCAACATTGATT+GGG | + | chr6_3:47447348-47447367 | Msa0952620:intron | 25.0% |
| ! | TATGTCTCACAAGTAAATTA+TGG | + | chr6_3:47447622-47447641 | Msa0952620:intron | 25.0% |
| ! | AAGGAAGTAAACACAAAAAA+AGG | + | chr6_3:47447685-47447704 | Msa0952620:intron | 25.0% |
| !! | AAGGATTAAGTTCTTTCTTT+TGG | + | chr6_3:47447704-47447723 | Msa0952620:intron | 25.0% |
| ! | GAGTGCAATGATTAAAATTT+AGG | + | chr6_3:47447734-47447753 | Msa0952620:intron | 25.0% |
| !!! | CACATTTTTTCAGTTCAATC+GGG | + | chr6_3:47445384-47445403 | Msa0952620:five_prime_UTR | 30.0% |
| CACAAAATTTGAATGAAGCT+AGG | - | chr6_3:47445579-47445598 | None:intergenic | 30.0% | |
| TGGTGAATTTATGGTATTAC+AGG | + | chr6_3:47445669-47445688 | Msa0952620:intron | 30.0% | |
| TTTATGGTATTACAGGATGA+AGG | + | chr6_3:47445676-47445695 | Msa0952620:intron | 30.0% | |
| !! | AGCTTTAGAAACATCATTTG+CGG | + | chr6_3:47446049-47446068 | Msa0952620:intron | 30.0% |
| GTTGAAAGTGAAAATCAATG+AGG | - | chr6_3:47446256-47446275 | None:intergenic | 30.0% | |
| ACACATTTGTAACGCAAAAA+GGG | - | chr6_3:47446286-47446305 | None:intergenic | 30.0% | |
| TAGGCATTCAAGAATGTAAT+AGG | - | chr6_3:47446348-47446367 | None:intergenic | 30.0% | |
| ATTTCAGATTCAGTCATCTT+TGG | - | chr6_3:47446575-47446594 | None:intergenic | 30.0% | |
| ATGGCAATGTATAAAATGCA+AGG | + | chr6_3:47446788-47446807 | Msa0952620:intron | 30.0% | |
| !! | TCTCAACAATGATGTTTTTG+TGG | + | chr6_3:47446858-47446877 | Msa0952620:intron | 30.0% |
| ATTAACTCTGTCTTAACTCT+AGG | + | chr6_3:47447324-47447343 | Msa0952620:intron | 30.0% | |
| !! | TAGATAGACTCTAAAATTGG+AGG | - | chr6_3:47447377-47447396 | None:intergenic | 30.0% |
| !!! | TCCAATTTTAGAGTCTATCT+AGG | + | chr6_3:47447376-47447395 | Msa0952620:intron | 30.0% |
| !! | TCCTAGATAGACTCTAAAAT+TGG | - | chr6_3:47447380-47447399 | None:intergenic | 30.0% |
| TTTAGAAACATCATTTGCGG+TGG | + | chr6_3:47446052-47446071 | Msa0952620:intron | 35.0% | |
| CACACATTTGTAACGCAAAA+AGG | - | chr6_3:47446287-47446306 | None:intergenic | 35.0% | |
| TACATTCTTGAATGCCTACA+TGG | + | chr6_3:47446350-47446369 | Msa0952620:intron | 35.0% | |
| ACATTCTTGAATGCCTACAT+GGG | + | chr6_3:47446351-47446370 | Msa0952620:intron | 35.0% | |
| TGTTACTAAAACACCCATGT+AGG | - | chr6_3:47446367-47446386 | None:intergenic | 35.0% | |
| !! | TCTTAGCCTTTTTGTATGGT+GGG | - | chr6_3:47446422-47446441 | None:intergenic | 35.0% |
| ! | ACTGAATCTGAAATCAAGTG+TGG | + | chr6_3:47446581-47446600 | Msa0952620:CDS | 35.0% |
| ! | CTGAATCTGAAATCAAGTGT+GGG | + | chr6_3:47446582-47446601 | Msa0952620:CDS | 35.0% |
| !! | GAAGATTGAGTTGGCTTTAA+AGG | + | chr6_3:47446604-47446623 | Msa0952620:CDS | 35.0% |
| !! | CAACAATGATGTTTTTGTGG+TGG | + | chr6_3:47446861-47446880 | Msa0952620:intron | 35.0% |
| !! | TTTGATTTGTGAAAGAAGCG+TGG | - | chr6_3:47446942-47446961 | None:intergenic | 35.0% |
| TCTACTTTGCTGAGCTTAAA+AGG | + | chr6_3:47447208-47447227 | Msa0952620:intron | 35.0% | |
| AGATTATGCATCATCTGCTG+CGG | - | chr6_3:47445437-47445456 | None:intergenic | 40.0% | |
| ATTCAGAGATCAATCGGAAG+AGG | + | chr6_3:47445457-47445476 | Msa0952620:CDS | 40.0% | |
| TCGAGGATTGGATTCGTATT+CGG | - | chr6_3:47445498-47445517 | None:intergenic | 40.0% | |
| ATCCAATCCTCGACTCAATT+CGG | + | chr6_3:47445505-47445524 | Msa0952620:CDS | 40.0% | |
| AATCTTACCGAATTGAGTCG+AGG | - | chr6_3:47445515-47445534 | None:intergenic | 40.0% | |
| GAAGAAGAAGTAGAGAGTGA+AGG | + | chr6_3:47445742-47445761 | Msa0952620:CDS | 40.0% | |
| AGTGGCTCGAATCTTAATCA+AGG | + | chr6_3:47446127-47446146 | Msa0952620:intron | 40.0% | |
| GTGGCTCGAATCTTAATCAA+GGG | + | chr6_3:47446128-47446147 | Msa0952620:intron | 40.0% | |
| TCTACTCCCACCATACAAAA+AGG | + | chr6_3:47446413-47446432 | Msa0952620:intron | 40.0% | |
| !! | CTCTTAGCCTTTTTGTATGG+TGG | - | chr6_3:47446423-47446442 | None:intergenic | 40.0% |
| !! | CCTCTCTTAGCCTTTTTGTA+TGG | - | chr6_3:47446426-47446445 | None:intergenic | 40.0% |
| CCATACAAAAAGGCTAAGAG+AGG | + | chr6_3:47446423-47446442 | Msa0952620:intron | 40.0% | |
| TGAAAGGAGAAGCTTCCTTA+TGG | + | chr6_3:47446470-47446489 | Msa0952620:intron | 40.0% | |
| TCATCAGGATTGTTTCGATC+AGG | - | chr6_3:47446656-47446675 | None:intergenic | 40.0% | |
| TCGAAACAATCCTGATGAAG+AGG | + | chr6_3:47446658-47446677 | Msa0952620:CDS | 40.0% | |
| CGAAACAATCCTGATGAAGA+GGG | + | chr6_3:47446659-47446678 | Msa0952620:CDS | 40.0% | |
| TATGCTCTTGCTGGATGAAA+AGG | + | chr6_3:47446691-47446710 | Msa0952620:CDS | 40.0% | |
| !! | CAATGATGTTTTTGTGGTGG+TGG | + | chr6_3:47446864-47446883 | Msa0952620:intron | 40.0% |
| ACCAATTGCAACCTTTGCAA+TGG | + | chr6_3:47447132-47447151 | Msa0952620:intron | 40.0% | |
| TCCATTGCAAAGGTTGCAAT+TGG | - | chr6_3:47447136-47447155 | None:intergenic | 40.0% | |
| CTCGCAATGATGAATTCTAC+AGG | - | chr6_3:47447169-47447188 | None:intergenic | 40.0% | |
| CTGTAGAATTCATCATTGCG+AGG | + | chr6_3:47447167-47447186 | Msa0952620:intron | 40.0% | |
| ATCATTGCGAGGAACAATTG+AGG | + | chr6_3:47447178-47447197 | Msa0952620:intron | 40.0% | |
| CTTTGCTGAGCTTAAAAGGT+TGG | + | chr6_3:47447212-47447231 | Msa0952620:intron | 40.0% | |
| !!! | GTTTGCTTTTGGTTTGTCGA+AGG | + | chr6_3:47447776-47447795 | Msa0952620:intron | 40.0% |
| TACCGAATTGAGTCGAGGAT+TGG | - | chr6_3:47445510-47445529 | None:intergenic | 45.0% | |
| TACAGGATGAAGGAGAGAGA+AGG | + | chr6_3:47445686-47445705 | Msa0952620:intron | 45.0% | |
| ACAGGATGAAGGAGAGAGAA+GGG | + | chr6_3:47445687-47445706 | Msa0952620:intron | 45.0% | |
| ATGAAGGAGAGAGAAGGGTA+GGG | + | chr6_3:47445692-47445711 | Msa0952620:CDS | 45.0% | |
| AAGTAGAGAGTGAAGGTGAG+AGG | + | chr6_3:47445749-47445768 | Msa0952620:intron | 45.0% | |
| AGTAGAGAGTGAAGGTGAGA+GGG | + | chr6_3:47445750-47445769 | Msa0952620:intron | 45.0% | |
| TGATTTCATGTCACAGCTCG+CGG | + | chr6_3:47446075-47446094 | Msa0952620:intron | 45.0% | |
| CAAGTGTGGGAAGATTGAGT+TGG | + | chr6_3:47446595-47446614 | Msa0952620:CDS | 45.0% | |
| TTCGATCAGGAATACTCCAC+AGG | - | chr6_3:47446643-47446662 | None:intergenic | 45.0% | |
| TAGCCTTCATATGCTCTTGC+TGG | + | chr6_3:47446682-47446701 | Msa0952620:CDS | 45.0% | |
| ! | CATCCAGCAAGAGCATATGA+AGG | - | chr6_3:47446688-47446707 | None:intergenic | 45.0% |
| !!! | GTTTTTGTGGTGGTGGTTGT+TGG | + | chr6_3:47446871-47446890 | Msa0952620:intron | 45.0% |
| ATTCCTCGAGTCCATTGCAA+AGG | - | chr6_3:47447146-47447165 | None:intergenic | 45.0% | |
| ! | GAAGGAGCATAAAAGAGCAG+CGG | + | chr6_3:47447794-47447813 | Msa0952620:intron | 45.0% |
| AGCATAAAAGAGCAGCGGAT+GGG | + | chr6_3:47447799-47447818 | Msa0952620:CDS | 45.0% | |
| AAGAGAAACCACACCGGAAC+TGG | + | chr6_3:47445409-47445428 | Msa0952620:five_prime_UTR | 50.0% | |
| GATGAAGGAGAGAGAAGGGT+AGG | + | chr6_3:47445691-47445710 | Msa0952620:CDS | 50.0% | |
| GCGGTGGTAATTGCATGTAG+TGG | + | chr6_3:47446109-47446128 | Msa0952620:intron | 50.0% | |
| GATCAGGAATACTCCACAGG+TGG | - | chr6_3:47446640-47446659 | None:intergenic | 50.0% | |
| TGAAGGCTACCCTCTTCATC+AGG | - | chr6_3:47446671-47446690 | None:intergenic | 50.0% | |
| ! | CAACCTTTGCAATGGACTCG+AGG | + | chr6_3:47447140-47447159 | Msa0952620:intron | 50.0% |
| GAGCATAAAAGAGCAGCGGA+TGG | + | chr6_3:47447798-47447817 | Msa0952620:CDS | 50.0% | |
| CGGGAGAAGAGAAACCACAC+CGG | + | chr6_3:47445403-47445422 | Msa0952620:five_prime_UTR | 55.0% | |
| GAGAGAAGGGTAGGGCAAGA+AGG | + | chr6_3:47445700-47445719 | Msa0952620:CDS | 55.0% | |
| AGGGTAGGGCAAGAAGGTGA+AGG | + | chr6_3:47445706-47445725 | Msa0952620:CDS | 55.0% | |
| GGGCAAGAAGGTGAAGGACA+AGG | + | chr6_3:47445712-47445731 | Msa0952620:CDS | 55.0% | |
| AGAGAGTGAAGGTGAGAGGG+AGG | + | chr6_3:47445753-47445772 | Msa0952620:intron | 55.0% | |
| !! | GCTCGCGGTGATGGTTTTTG+CGG | + | chr6_3:47446090-47446109 | Msa0952620:intron | 55.0% |
| AGGCTAGAGTCATCCACCTG+TGG | + | chr6_3:47446624-47446643 | Msa0952620:CDS | 55.0% | |
| ! | ATCTGCTGCGGTGCCAGTTC+CGG | - | chr6_3:47445425-47445444 | None:intergenic | 60.0% |
| CATGTCACAGCTCGCGGTGA+TGG | + | chr6_3:47446081-47446100 | Msa0952620:intron | 60.0% | |
| !! | CGCGGTGATGGTTTTTGCGG+TGG | + | chr6_3:47446093-47446112 | Msa0952620:intron | 60.0% |
| ! | CTGCGGTGCCAGTTCCGGTG+TGG | - | chr6_3:47445420-47445439 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 47445374 | 47447830 | 47445374 | ID=Msa0952620;Name=Msa0952620 |
| chr6_3 | mRNA | 47445374 | 47447830 | 47445374 | ID=Msa0952620-mRNA-1;Parent=Msa0952620;Name=Msa0952620-mRNA-1;_AED=0.14;_eAED=0.14;_QI=69|0.33|0.5|0.75|1|1|4|0|112 |
| chr6_3 | exon | 47445374 | 47445526 | 47445374 | ID=Msa0952620-mRNA-1:exon:10425;Parent=Msa0952620-mRNA-1 |
| chr6_3 | exon | 47445691 | 47445763 | 47445691 | ID=Msa0952620-mRNA-1:exon:10426;Parent=Msa0952620-mRNA-1 |
| chr6_3 | exon | 47446564 | 47446712 | 47446564 | ID=Msa0952620-mRNA-1:exon:10427;Parent=Msa0952620-mRNA-1 |
| chr6_3 | exon | 47447798 | 47447830 | 47447798 | ID=Msa0952620-mRNA-1:exon:10428;Parent=Msa0952620-mRNA-1 |
| chr6_3 | five_prime_UTR | 47445374 | 47445442 | 47445374 | ID=Msa0952620-mRNA-1:five_prime_utr;Parent=Msa0952620-mRNA-1 |
| chr6_3 | CDS | 47445443 | 47445526 | 47445443 | ID=Msa0952620-mRNA-1:cds;Parent=Msa0952620-mRNA-1 |
| chr6_3 | CDS | 47445691 | 47445763 | 47445691 | ID=Msa0952620-mRNA-1:cds;Parent=Msa0952620-mRNA-1 |
| chr6_3 | CDS | 47446564 | 47446712 | 47446564 | ID=Msa0952620-mRNA-1:cds;Parent=Msa0952620-mRNA-1 |
| chr6_3 | CDS | 47447798 | 47447830 | 47447798 | ID=Msa0952620-mRNA-1:cds;Parent=Msa0952620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
