Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872150 | KEH26597.1 | 62.319 | 69 | 26 | 0 | 96 | 164 | 193 | 261 | 1.47e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872150 | A0A072UAC5 | 62.319 | 69 | 26 | 0 | 96 | 164 | 193 | 261 | 7.00e-25 | 107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063040 | Msa0872150 | 0.825437 | 4.690547e-54 | -8.615850e-47 |
| Msa0813850 | Msa0872150 | 0.800446 | 1.435993e-48 | -8.615850e-47 |
| Msa0872150 | Msa0952620 | 0.856032 | 4.231348e-62 | -8.615850e-47 |
| Msa0872150 | Msa0981110 | 0.863442 | 2.482371e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872150 | MtrunA17_Chr8g0365871 | 57.812 | 64 | 27 | 0 | 101 | 164 | 14 | 77 | 1.09e-25 | 94.7 |
| Msa0872150 | MtrunA17_Chr8g0366201 | 59.091 | 66 | 26 | 1 | 99 | 164 | 1 | 65 | 2.08e-23 | 89.4 |
| Msa0872150 | MtrunA17_Chr4g0023021 | 54.688 | 64 | 29 | 0 | 101 | 164 | 5 | 68 | 2.69e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATTGAGTTGGCTTTAA+AGG | 0.220667 | 6_1:+7534669 | Msa0872150:CDS |
| TTATCCCTGGAAATTGCTTA+TGG | 0.275182 | 6_1:+7536990 | Msa0872150:CDS |
| ATTTCAGATTCAGTCATCTT+TGG | 0.283107 | 6_1:-7534637 | None:intergenic |
| CGTATACTCAGAAGCTGAAT+TGG | 0.323199 | 6_1:+7536902 | Msa0872150:intron |
| AAGAGAAACCACACCGGAAC+TGG | 0.370310 | 6_1:+7533473 | Msa0872150:five_prime_UTR |
| GATCAAATGTCTTCCCTGAT+TGG | 0.371930 | 6_1:+7537094 | Msa0872150:CDS |
| ATCCAATCCTCGACTCAATT+CGG | 0.383316 | 6_1:+7533569 | Msa0872150:CDS |
| TCGAGGATTGGATTCGTATT+CGG | 0.383722 | 6_1:-7533559 | None:intergenic |
| GAAATCCATAAGCAATTTCC+AGG | 0.386491 | 6_1:-7536995 | None:intergenic |
| ATCTGCTGCGGTGCCAGTTC+CGG | 0.402583 | 6_1:-7533486 | None:intergenic |
| GCAGGATGAAGGAGAGAGAA+GGG | 0.410575 | 6_1:+7533751 | Msa0872150:intron |
| TTTAACTCAACAAACCAATC+AGG | 0.425280 | 6_1:-7537108 | None:intergenic |
| GAGAGAAGGGTAGGGCAAGA+AGG | 0.440573 | 6_1:+7533764 | Msa0872150:CDS |
| TACCGAATTGAGTCGAGGAT+TGG | 0.448746 | 6_1:-7533571 | None:intergenic |
| TCAGCAGGATTGTTTCGATC+AGG | 0.448982 | 6_1:-7534718 | None:intergenic |
| TTGATTACCTTGGTTATCCC+TGG | 0.452594 | 6_1:+7536977 | Msa0872150:CDS |
| TTAATAGTTGTAGGCAATGC+TGG | 0.461066 | 6_1:+7536784 | Msa0872150:intron |
| ACTCAGAAGCTGAATTGGAT+TGG | 0.478838 | 6_1:+7536907 | Msa0872150:intron |
| TCGAAACAATCCTGCTGAAG+AGG | 0.485044 | 6_1:+7534723 | Msa0872150:CDS |
| TTTATGGTATTGCAGGATGA+AGG | 0.487642 | 6_1:+7533740 | Msa0872150:intron |
| TAATCTATTCAGAGATCAAT+CGG | 0.497849 | 6_1:+7533515 | Msa0872150:CDS |
| ATAACTATCATTGATTACCT+TGG | 0.516834 | 6_1:+7536967 | Msa0872150:CDS |
| TGCAGGATGAAGGAGAGAGA+AGG | 0.521958 | 6_1:+7533750 | Msa0872150:intron |
| CTTATGGATTTCTCTCACGA+TGG | 0.528148 | 6_1:+7537006 | Msa0872150:CDS |
| GATGAAGGAGAGAGAAGGGT+AGG | 0.529746 | 6_1:+7533755 | Msa0872150:CDS |
| TGCTGGCACAGAGGCAATGT+TGG | 0.540489 | 6_1:+7536801 | Msa0872150:CDS |
| TTCGATCAGGAATACTCCAC+AGG | 0.549838 | 6_1:-7534705 | None:intergenic |
| GTTATCTCAGATGGCTCAGT+AGG | 0.557480 | 6_1:-7536949 | None:intergenic |
| ATTCAGAGATCAATCGGAAG+AGG | 0.569947 | 6_1:+7533521 | Msa0872150:CDS |
| TCAATGATAGTTATCTCAGA+TGG | 0.571641 | 6_1:-7536958 | None:intergenic |
| TGAAGGCTACCCTCTTCAGC+AGG | 0.572156 | 6_1:-7534733 | None:intergenic |
| GAAGAAGAAGTAGAGAGTGA+AGG | 0.574931 | 6_1:+7533806 | Msa0872150:CDS |
| CGAAACAATCCTGCTGAAGA+GGG | 0.578664 | 6_1:+7534724 | Msa0872150:CDS |
| ATGAAGGAGAGAGAAGGGTA+GGG | 0.580265 | 6_1:+7533756 | Msa0872150:CDS |
| AGGGTAGGGCAAGAAGGTGA+AGG | 0.585834 | 6_1:+7533770 | Msa0872150:CDS |
| TTAACTCAACAAACCAATCA+GGG | 0.600339 | 6_1:-7537107 | None:intergenic |
| GGGCAAGAAGGTGAAGGACA+AGG | 0.613410 | 6_1:+7533776 | Msa0872150:CDS |
| GATGTGCAAAGCACGTATGC+TGG | 0.618089 | 6_1:+7537065 | Msa0872150:CDS |
| AAAGCACGTATGCTGGTGGA+AGG | 0.622821 | 6_1:+7537072 | Msa0872150:CDS |
| CAAGTGTGGGAAGATTGAGT+TGG | 0.630943 | 6_1:+7534660 | Msa0872150:CDS |
| ACTGAATCTGAAATCAAGTG+TGG | 0.640389 | 6_1:+7534646 | Msa0872150:CDS |
| GTGCAAAGCACGTATGCTGG+TGG | 0.648399 | 6_1:+7537068 | Msa0872150:CDS |
| CTGAATCTGAAATCAAGTGT+GGG | 0.650456 | 6_1:+7534647 | Msa0872150:CDS |
| AATCTTACCGAATTGAGTCG+AGG | 0.654505 | 6_1:-7533576 | None:intergenic |
| CTGCGGTGCCAGTTCCGGTG+TGG | 0.658353 | 6_1:-7533481 | None:intergenic |
| AGATTATGCATCATCTGCTG+CGG | 0.660899 | 6_1:-7533498 | None:intergenic |
| AAATCCATAAGCAATTTCCA+GGG | 0.661455 | 6_1:-7536994 | None:intergenic |
| AGGCTAGAGTCATTCACCTG+TGG | 0.673172 | 6_1:+7534689 | Msa0872150:CDS |
| GCAATTTCCAGGGATAACCA+AGG | 0.691658 | 6_1:-7536984 | None:intergenic |
| TGTAGGCAATGCTGGCACAG+AGG | 0.724086 | 6_1:+7536792 | Msa0872150:intron |
| GGGGAGAAGAGAAACCACAC+CGG | 0.748418 | 6_1:+7533467 | Msa0872150:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAACAAAATTTTATC+AGG | - | chr6_1:7533903-7533922 | None:intergenic | 10.0% |
| !! | TTTCATTATTGAAATAAAAA+GGG | - | chr6_1:7534813-7534832 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATCTAATTCAAA+AGG | + | chr6_1:7534889-7534908 | Msa0872150:intron | 10.0% |
| !! | TCAATTACAAATAAAATAAT+TGG | - | chr6_1:7536611-7536630 | None:intergenic | 10.0% |
| !!! | ATCATATTTGAAATTTGAAA+TGG | + | chr6_1:7533713-7533732 | Msa0872150:intron | 15.0% |
| !! | AATTAACCAAAATTTGTAAA+TGG | - | chr6_1:7534041-7534060 | None:intergenic | 15.0% |
| !! | AATAGAATAGATATGAAATT+AGG | - | chr6_1:7534783-7534802 | None:intergenic | 15.0% |
| !! | GTTTCATTATTGAAATAAAA+AGG | - | chr6_1:7534814-7534833 | None:intergenic | 15.0% |
| !! | TAAATATGTGAATCTTTAAA+TGG | + | chr6_1:7534834-7534853 | Msa0872150:intron | 15.0% |
| !! | CAAAATATAAACACAAAAAA+AGG | - | chr6_1:7534956-7534975 | None:intergenic | 15.0% |
| !!! | TACATGAATTAATTTAACTT+TGG | + | chr6_1:7535038-7535057 | Msa0872150:intron | 15.0% |
| !! | CATTACAAAATTTAACTAAA+AGG | - | chr6_1:7535085-7535104 | None:intergenic | 15.0% |
| !! | TAAAATTCATCTTATACTTA+TGG | - | chr6_1:7535422-7535441 | None:intergenic | 15.0% |
| !!! | TAAGTATAAGATGAATTTTA+TGG | + | chr6_1:7535422-7535441 | Msa0872150:intron | 15.0% |
| !!! | AAGTATAAGATGAATTTTAT+GGG | + | chr6_1:7535423-7535442 | Msa0872150:intron | 15.0% |
| !! | AACTATTAACATGATATTTA+AGG | - | chr6_1:7536773-7536792 | None:intergenic | 15.0% |
| !!! | AATTTGAAATGGTGAATTTA+TGG | + | chr6_1:7533724-7533743 | Msa0872150:intron | 20.0% |
| !! | GAACAAAACAATTATAGAAT+GGG | - | chr6_1:7533932-7533951 | None:intergenic | 20.0% |
| !! | AGAACAAAACAATTATAGAA+TGG | - | chr6_1:7533933-7533952 | None:intergenic | 20.0% |
| !! | TTCAAAAAATATGAAACTGT+AGG | + | chr6_1:7534083-7534102 | Msa0872150:intron | 20.0% |
| !! | AAATAAATGCATAAAGAAGA+AGG | - | chr6_1:7534229-7534248 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGAATTTAGATTT+AGG | + | chr6_1:7534369-7534388 | Msa0872150:intron | 20.0% |
| !! | AATAATGTAGAATTTCCATA+AGG | - | chr6_1:7534553-7534572 | None:intergenic | 20.0% |
| !! | TATAAAATGCAAGGATTTAT+AGG | + | chr6_1:7534862-7534881 | Msa0872150:intron | 20.0% |
| !!! | TGAATTAATTTAACTTTGGT+AGG | + | chr6_1:7535042-7535061 | Msa0872150:intron | 20.0% |
| !!! | TGTTTCTATCATTGTTATTT+AGG | + | chr6_1:7536202-7536221 | Msa0872150:intron | 20.0% |
| !!! | TTGGTCATTTTACAAATAAA+TGG | - | chr6_1:7536592-7536611 | None:intergenic | 20.0% |
| !! | ACATGTAAATGAAACATAAT+TGG | - | chr6_1:7536653-7536672 | None:intergenic | 20.0% |
| !! | AATATCATGTTAATAGTTGT+AGG | + | chr6_1:7536775-7536794 | Msa0872150:intron | 20.0% |
| !!! | ACACATTTTTTCTGTTCAAT+AGG | + | chr6_1:7533446-7533465 | Msa0872150:five_prime_UTR | 25.0% |
| !!! | CACATTTTTTCTGTTCAATA+GGG | + | chr6_1:7533447-7533466 | Msa0872150:five_prime_UTR | 25.0% |
| !!! | ACATTTTTTCTGTTCAATAG+GGG | + | chr6_1:7533448-7533467 | Msa0872150:five_prime_UTR | 25.0% |
| ! | TAATCTATTCAGAGATCAAT+CGG | + | chr6_1:7533515-7533534 | Msa0872150:CDS | 25.0% |
| ! | ACAAAATTTGAATGAAGCTA+GGG | - | chr6_1:7533642-7533661 | None:intergenic | 25.0% |
| ! | TATTCGTTTGTTTATGCATT+TGG | + | chr6_1:7533687-7533706 | Msa0872150:intron | 25.0% |
| ! | ATATAGAAGTAGCTTCAAAA+TGG | + | chr6_1:7533990-7534009 | Msa0872150:intron | 25.0% |
| !! | GCTTAACCATTTACAAATTT+TGG | + | chr6_1:7534032-7534051 | Msa0872150:intron | 25.0% |
| ! | TATGTCTTATATGTGTTGAA+AGG | + | chr6_1:7534519-7534538 | Msa0872150:intron | 25.0% |
| ! | GTGTATTAGTTAGATGATAT+AGG | + | chr6_1:7534999-7535018 | Msa0872150:intron | 25.0% |
| !! | TGTATGCCTGTAATTTATTT+TGG | + | chr6_1:7535143-7535162 | Msa0872150:intron | 25.0% |
| ! | AAAAAATCCATGCATTCATA+AGG | + | chr6_1:7535300-7535319 | Msa0872150:intron | 25.0% |
| !!! | TTATGTCTTTGAGAGTTTTA+TGG | + | chr6_1:7535362-7535381 | Msa0872150:intron | 25.0% |
| !! | TATAAGATGAATTTTATGGG+TGG | + | chr6_1:7535426-7535445 | Msa0872150:intron | 25.0% |
| !!! | TTTCAAATTTGTGCCATTTA+CGG | + | chr6_1:7535494-7535513 | Msa0872150:intron | 25.0% |
| ! | ATAACACACAATGTTAGATT+AGG | - | chr6_1:7535618-7535637 | None:intergenic | 25.0% |
| ! | ATGACTATTAACTAAAGTCA+AGG | + | chr6_1:7535788-7535807 | Msa0872150:intron | 25.0% |
| !!! | ATTCTGAAATAGTTTTCCAA+GGG | - | chr6_1:7536177-7536196 | None:intergenic | 25.0% |
| ! | AACTACCAAAACACATATTT+AGG | - | chr6_1:7536538-7536557 | None:intergenic | 25.0% |
| ! | ATACACACATAACATTCATT+GGG | - | chr6_1:7536695-7536714 | None:intergenic | 25.0% |
| ! | GAATTGAAAAAACATAAGCA+TGG | - | chr6_1:7536720-7536739 | None:intergenic | 25.0% |
| ! | CAATTAGAGCTTAAGAATAT+AGG | - | chr6_1:7536837-7536856 | None:intergenic | 25.0% |
| ! | ATACGAAGAAAAAAAAGGTT+CGG | - | chr6_1:7536887-7536906 | None:intergenic | 25.0% |
| ! | TGAGTATACGAAGAAAAAAA+AGG | - | chr6_1:7536892-7536911 | None:intergenic | 25.0% |
| !! | ATAACTATCATTGATTACCT+TGG | + | chr6_1:7536967-7536986 | Msa0872150:CDS | 25.0% |
| CACAAAATTTGAATGAAGCT+AGG | - | chr6_1:7533643-7533662 | None:intergenic | 30.0% | |
| !! | AGCTTTAGAAACATCAATTG+CGG | + | chr6_1:7534114-7534133 | Msa0872150:intron | 30.0% |
| ACACATTTGTAACGCAAAAA+GGG | - | chr6_1:7534351-7534370 | None:intergenic | 30.0% | |
| TAGGCATTCAAGAATGTAAT+AGG | - | chr6_1:7534413-7534432 | None:intergenic | 30.0% | |
| TGTTACTAAAACACACATGT+AGG | - | chr6_1:7534432-7534451 | None:intergenic | 30.0% | |
| ATTTCAGATTCAGTCATCTT+TGG | - | chr6_1:7534640-7534659 | None:intergenic | 30.0% | |
| ATGGCAATGTATAAAATGCA+AGG | + | chr6_1:7534853-7534872 | Msa0872150:intron | 30.0% | |
| TGCAGACCAAAATAAATTAC+AGG | - | chr6_1:7535152-7535171 | None:intergenic | 30.0% | |
| AGCTCAGTAAGTAATAACAA+TGG | - | chr6_1:7535226-7535245 | None:intergenic | 30.0% | |
| ! | AGCTCAATTTTCTAAGTGTT+TGG | + | chr6_1:7535242-7535261 | Msa0872150:intron | 30.0% |
| ! | TGATTTTATATCGTGAAGTG+TGG | + | chr6_1:7535277-7535296 | Msa0872150:intron | 30.0% |
| ! | AGTCTTGTAAACATGATCAT+TGG | - | chr6_1:7535394-7535413 | None:intergenic | 30.0% |
| ! | ACAAATTTGAAATGAGTAGC+AGG | - | chr6_1:7535486-7535505 | None:intergenic | 30.0% |
| TTGTGTGTTATAGATGTCAT+TGG | + | chr6_1:7535627-7535646 | Msa0872150:intron | 30.0% | |
| ! | ACCATAAGAAAATACTGACT+GGG | - | chr6_1:7535846-7535865 | None:intergenic | 30.0% |
| ! | TCTAGAGTTACTTCAAGAAA+AGG | + | chr6_1:7535884-7535903 | Msa0872150:intron | 30.0% |
| ! | AAGAAAAGGCCTAAAGATTT+TGG | + | chr6_1:7535898-7535917 | Msa0872150:intron | 30.0% |
| CGTTAATCACCAAAATCTTT+AGG | - | chr6_1:7535910-7535929 | None:intergenic | 30.0% | |
| ! | TCCTACATGAGTAATTTTCT+CGG | + | chr6_1:7536121-7536140 | Msa0872150:intron | 30.0% |
| !!! | TTCTGAAATAGTTTTCCAAG+GGG | - | chr6_1:7536176-7536195 | None:intergenic | 30.0% |
| !!! | CATTCTGAAATAGTTTTCCA+AGG | - | chr6_1:7536178-7536197 | None:intergenic | 30.0% |
| GGAATTGTCAATCTCAAAAA+TGG | + | chr6_1:7536223-7536242 | Msa0872150:intron | 30.0% | |
| TCTAATGACATCATGTATGA+AGG | + | chr6_1:7536277-7536296 | Msa0872150:intron | 30.0% | |
| ! | CAATGCCTAAATATGTGTTT+TGG | + | chr6_1:7536530-7536549 | Msa0872150:intron | 30.0% |
| CATACACACATAACATTCAT+TGG | - | chr6_1:7536696-7536715 | None:intergenic | 30.0% | |
| TCAATGATAGTTATCTCAGA+TGG | - | chr6_1:7536961-7536980 | None:intergenic | 30.0% | |
| AAATCCATAAGCAATTTCCA+GGG | - | chr6_1:7536997-7537016 | None:intergenic | 30.0% | |
| TTAACTCAACAAACCAATCA+GGG | - | chr6_1:7537110-7537129 | None:intergenic | 30.0% | |
| TTTAACTCAACAAACCAATC+AGG | - | chr6_1:7537111-7537130 | None:intergenic | 30.0% | |
| TGGTGAATTTATGGTATTGC+AGG | + | chr6_1:7533733-7533752 | Msa0872150:intron | 35.0% | |
| TTTATGGTATTGCAGGATGA+AGG | + | chr6_1:7533740-7533759 | Msa0872150:intron | 35.0% | |
| ! | TTGCAGCTCATTACAGATTT+TGG | + | chr6_1:7534059-7534078 | Msa0872150:intron | 35.0% |
| TTTAGAAACATCAATTGCGG+TGG | + | chr6_1:7534117-7534136 | Msa0872150:intron | 35.0% | |
| GTTGAAAGTGAAACTCAATG+AGG | - | chr6_1:7534321-7534340 | None:intergenic | 35.0% | |
| CACACATTTGTAACGCAAAA+AGG | - | chr6_1:7534352-7534371 | None:intergenic | 35.0% | |
| !! | TCTTAGCCTTTTTGTATGGT+GGG | - | chr6_1:7534487-7534506 | None:intergenic | 35.0% |
| ! | ACTGAATCTGAAATCAAGTG+TGG | + | chr6_1:7534646-7534665 | Msa0872150:CDS | 35.0% |
| ! | CTGAATCTGAAATCAAGTGT+GGG | + | chr6_1:7534647-7534666 | Msa0872150:CDS | 35.0% |
| !! | GAAGATTGAGTTGGCTTTAA+AGG | + | chr6_1:7534669-7534688 | Msa0872150:CDS | 35.0% |
| GATTCTTCCTTATGAATGCA+TGG | - | chr6_1:7535310-7535329 | None:intergenic | 35.0% | |
| !! | GTCTTTGAGAGTTTTATGGT+TGG | + | chr6_1:7535366-7535385 | Msa0872150:intron | 35.0% |
| AAACCGAGAAGAATGGTAAA+AGG | + | chr6_1:7535679-7535698 | Msa0872150:intron | 35.0% | |
| GGATAATGTTCTTGAAGACT+TGG | + | chr6_1:7535713-7535732 | Msa0872150:intron | 35.0% | |
| !! | TAAGTTGGTTATTTCGACGA+TGG | + | chr6_1:7535738-7535757 | Msa0872150:intron | 35.0% |
| ATAGCAAAAGAAAGAGCCAA+CGG | - | chr6_1:7535770-7535789 | None:intergenic | 35.0% | |
| ! | CCATAAGAAAATACTGACTG+GGG | - | chr6_1:7535845-7535864 | None:intergenic | 35.0% |
| GACCATAAGAAAATACTGAC+TGG | - | chr6_1:7535847-7535866 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGATTAACGACGA+AGG | + | chr6_1:7535914-7535933 | Msa0872150:intron | 35.0% |
| AAGAGTTGTTCCAGAATGTT+CGG | + | chr6_1:7535972-7535991 | Msa0872150:intron | 35.0% | |
| ACATTAACTACCGAACATTC+TGG | - | chr6_1:7535985-7536004 | None:intergenic | 35.0% | |
| TTTGCTTCTATGCTTCTCAT+TGG | + | chr6_1:7536089-7536108 | Msa0872150:intron | 35.0% | |
| ACCGAGAAAATTACTCATGT+AGG | - | chr6_1:7536125-7536144 | None:intergenic | 35.0% | |
| ATTGAAGAATGTAACAGGAG+TGG | - | chr6_1:7536514-7536533 | None:intergenic | 35.0% | |
| !! | TAGGCATTGAAGAATGTAAC+AGG | - | chr6_1:7536519-7536538 | None:intergenic | 35.0% |
| TTAATAGTTGTAGGCAATGC+TGG | + | chr6_1:7536784-7536803 | Msa0872150:intron | 35.0% | |
| TTATCCCTGGAAATTGCTTA+TGG | + | chr6_1:7536990-7537009 | Msa0872150:CDS | 35.0% | |
| GAAATCCATAAGCAATTTCC+AGG | - | chr6_1:7536998-7537017 | None:intergenic | 35.0% | |
| AGATTATGCATCATCTGCTG+CGG | - | chr6_1:7533501-7533520 | None:intergenic | 40.0% | |
| ATTCAGAGATCAATCGGAAG+AGG | + | chr6_1:7533521-7533540 | Msa0872150:CDS | 40.0% | |
| TCGAGGATTGGATTCGTATT+CGG | - | chr6_1:7533562-7533581 | None:intergenic | 40.0% | |
| ATCCAATCCTCGACTCAATT+CGG | + | chr6_1:7533569-7533588 | Msa0872150:CDS | 40.0% | |
| AATCTTACCGAATTGAGTCG+AGG | - | chr6_1:7533579-7533598 | None:intergenic | 40.0% | |
| GAAGAAGAAGTAGAGAGTGA+AGG | + | chr6_1:7533806-7533825 | Msa0872150:CDS | 40.0% | |
| AGTGGCTCGAATCTTAATCA+AGG | + | chr6_1:7534192-7534211 | Msa0872150:intron | 40.0% | |
| GTGGCTCGAATCTTAATCAA+GGG | + | chr6_1:7534193-7534212 | Msa0872150:intron | 40.0% | |
| TCTACTCCCACCATACAAAA+AGG | + | chr6_1:7534478-7534497 | Msa0872150:intron | 40.0% | |
| !! | CTCTTAGCCTTTTTGTATGG+TGG | - | chr6_1:7534488-7534507 | None:intergenic | 40.0% |
| !! | CCTCTCTTAGCCTTTTTGTA+TGG | - | chr6_1:7534491-7534510 | None:intergenic | 40.0% |
| CCATACAAAAAGGCTAAGAG+AGG | + | chr6_1:7534488-7534507 | Msa0872150:intron | 40.0% | |
| TGAAAGGAGATGCTTCCTTA+TGG | + | chr6_1:7534535-7534554 | Msa0872150:intron | 40.0% | |
| TATGCTCTTGCTGGATGAAA+AGG | + | chr6_1:7534756-7534775 | Msa0872150:intron | 40.0% | |
| GAATCTGATCTCACTCTTCA+AGG | + | chr6_1:7535325-7535344 | Msa0872150:intron | 40.0% | |
| ! | GAATTTTATGGGTGGCACAA+AGG | + | chr6_1:7535434-7535453 | Msa0872150:intron | 40.0% |
| GCAGACACAATTTCCGTAAA+TGG | - | chr6_1:7535510-7535529 | None:intergenic | 40.0% | |
| AGATGTCATTGGTCATGTAG+AGG | + | chr6_1:7535638-7535657 | Msa0872150:intron | 40.0% | |
| AGAGGAGAAAGATGTTGTCA+AGG | + | chr6_1:7535656-7535675 | Msa0872150:intron | 40.0% | |
| ! | GCTCCTTTTACCATTCTTCT+CGG | - | chr6_1:7535685-7535704 | None:intergenic | 40.0% |
| GAAGAATGGTAAAAGGAGCA+AGG | + | chr6_1:7535686-7535705 | Msa0872150:intron | 40.0% | |
| TGGTAAAAGGAGCAAGGTTA+TGG | + | chr6_1:7535692-7535711 | Msa0872150:intron | 40.0% | |
| CTTGAAGACTTGGAGTAAGT+TGG | + | chr6_1:7535723-7535742 | Msa0872150:intron | 40.0% | |
| GGTCAGTTGCTTAATCAAGT+CGG | + | chr6_1:7535809-7535828 | Msa0872150:intron | 40.0% | |
| ! | CCCCAGTCAGTATTTTCTTA+TGG | + | chr6_1:7535842-7535861 | Msa0872150:intron | 40.0% |
| GAAAGAAGCCATCTGATAGA+AGG | - | chr6_1:7536151-7536170 | None:intergenic | 40.0% | |
| ! | TGAAATAGTTTTCCAAGGGG+TGG | - | chr6_1:7536173-7536192 | None:intergenic | 40.0% |
| CGTATACTCAGAAGCTGAAT+TGG | + | chr6_1:7536902-7536921 | Msa0872150:intron | 40.0% | |
| ACTCAGAAGCTGAATTGGAT+TGG | + | chr6_1:7536907-7536926 | Msa0872150:intron | 40.0% | |
| TTGATTACCTTGGTTATCCC+TGG | + | chr6_1:7536977-7536996 | Msa0872150:CDS | 40.0% | |
| CTTATGGATTTCTCTCACGA+TGG | + | chr6_1:7537006-7537025 | Msa0872150:CDS | 40.0% | |
| GATCAAATGTCTTCCCTGAT+TGG | + | chr6_1:7537094-7537113 | Msa0872150:CDS | 40.0% | |
| TACCGAATTGAGTCGAGGAT+TGG | - | chr6_1:7533574-7533593 | None:intergenic | 45.0% | |
| ATGAAGGAGAGAGAAGGGTA+GGG | + | chr6_1:7533756-7533775 | Msa0872150:CDS | 45.0% | |
| AAGTAGAGAGTGAAGGTGAG+AGG | + | chr6_1:7533813-7533832 | Msa0872150:intron | 45.0% | |
| AGTAGAGAGTGAAGGTGAGA+GGG | + | chr6_1:7533814-7533833 | Msa0872150:intron | 45.0% | |
| TGATTTCATGTAGCAGCTCG+CGG | + | chr6_1:7534140-7534159 | Msa0872150:intron | 45.0% | |
| CAAGTGTGGGAAGATTGAGT+TGG | + | chr6_1:7534660-7534679 | Msa0872150:CDS | 45.0% | |
| TTCGATCAGGAATACTCCAC+AGG | - | chr6_1:7534708-7534727 | None:intergenic | 45.0% | |
| TCAGCAGGATTGTTTCGATC+AGG | - | chr6_1:7534721-7534740 | None:intergenic | 45.0% | |
| TCGAAACAATCCTGCTGAAG+AGG | + | chr6_1:7534723-7534742 | Msa0872150:CDS | 45.0% | |
| CGAAACAATCCTGCTGAAGA+GGG | + | chr6_1:7534724-7534743 | Msa0872150:CDS | 45.0% | |
| TAGCCTTCATATGCTCTTGC+TGG | + | chr6_1:7534747-7534766 | Msa0872150:intron | 45.0% | |
| ! | CATCCAGCAAGAGCATATGA+AGG | - | chr6_1:7534753-7534772 | None:intergenic | 45.0% |
| ATCTCACTCTTCAAGGATCG+AGG | + | chr6_1:7535332-7535351 | Msa0872150:intron | 45.0% | |
| TCTCACTCTTCAAGGATCGA+GGG | + | chr6_1:7535333-7535352 | Msa0872150:intron | 45.0% | |
| GGAAATTGTGTCTGCACCTA+GGG | + | chr6_1:7535515-7535534 | Msa0872150:intron | 45.0% | |
| GTCAAGGAAACCGAGAAGAA+TGG | + | chr6_1:7535672-7535691 | Msa0872150:intron | 45.0% | |
| GCTTCTATGCTTCTCATTGG+TGG | + | chr6_1:7536092-7536111 | Msa0872150:intron | 45.0% | |
| TCGGTCATCCTTCTATCAGA+TGG | + | chr6_1:7536140-7536159 | Msa0872150:intron | 45.0% | |
| GTTATCTCAGATGGCTCAGT+AGG | - | chr6_1:7536952-7536971 | None:intergenic | 45.0% | |
| GCAATTTCCAGGGATAACCA+AGG | - | chr6_1:7536987-7537006 | None:intergenic | 45.0% | |
| ! | GATGTGTCGTGCATGTTTTC+TGG | + | chr6_1:7537030-7537049 | Msa0872150:CDS | 45.0% |
| AAGAGAAACCACACCGGAAC+TGG | + | chr6_1:7533473-7533492 | Msa0872150:five_prime_UTR | 50.0% | |
| TGCAGGATGAAGGAGAGAGA+AGG | + | chr6_1:7533750-7533769 | Msa0872150:intron | 50.0% | |
| GCAGGATGAAGGAGAGAGAA+GGG | + | chr6_1:7533751-7533770 | Msa0872150:intron | 50.0% | |
| GATGAAGGAGAGAGAAGGGT+AGG | + | chr6_1:7533755-7533774 | Msa0872150:CDS | 50.0% | |
| GCGGTGGTAATTGCATGTAG+TGG | + | chr6_1:7534174-7534193 | Msa0872150:intron | 50.0% | |
| AGGCTAGAGTCATTCACCTG+TGG | + | chr6_1:7534689-7534708 | Msa0872150:CDS | 50.0% | |
| CGGAAATTGTGTCTGCACCT+AGG | + | chr6_1:7535514-7535533 | Msa0872150:intron | 50.0% | |
| TGTCTGCACCTAGGGAAGAT+AGG | + | chr6_1:7535523-7535542 | Msa0872150:intron | 50.0% | |
| CCAAGCAACCTATCTTCCCT+AGG | - | chr6_1:7535534-7535553 | None:intergenic | 50.0% | |
| CCTAGGGAAGATAGGTTGCT+TGG | + | chr6_1:7535531-7535550 | Msa0872150:intron | 50.0% | |
| !! | CGTGCATGTTTTCTGGTGAG+TGG | + | chr6_1:7537037-7537056 | Msa0872150:CDS | 50.0% |
| !! | CATGTTTTCTGGTGAGTGGC+AGG | + | chr6_1:7537041-7537060 | Msa0872150:CDS | 50.0% |
| GATGTGCAAAGCACGTATGC+TGG | + | chr6_1:7537065-7537084 | Msa0872150:CDS | 50.0% | |
| AAAGCACGTATGCTGGTGGA+AGG | + | chr6_1:7537072-7537091 | Msa0872150:CDS | 50.0% | |
| GGGGAGAAGAGAAACCACAC+CGG | + | chr6_1:7533467-7533486 | Msa0872150:five_prime_UTR | 55.0% | |
| GAGAGAAGGGTAGGGCAAGA+AGG | + | chr6_1:7533764-7533783 | Msa0872150:CDS | 55.0% | |
| AGGGTAGGGCAAGAAGGTGA+AGG | + | chr6_1:7533770-7533789 | Msa0872150:CDS | 55.0% | |
| GGGCAAGAAGGTGAAGGACA+AGG | + | chr6_1:7533776-7533795 | Msa0872150:CDS | 55.0% | |
| AGAGAGTGAAGGTGAGAGGG+AGG | + | chr6_1:7533817-7533836 | Msa0872150:intron | 55.0% | |
| !! | GCTCGCGGTGATGGTTTTTG+CGG | + | chr6_1:7534155-7534174 | Msa0872150:intron | 55.0% |
| TGAAGGCTACCCTCTTCAGC+AGG | - | chr6_1:7534736-7534755 | None:intergenic | 55.0% | |
| TCGACGATGGCAGTTTCCGT+TGG | + | chr6_1:7535751-7535770 | Msa0872150:intron | 55.0% | |
| GATGGCTTCTTTCCACCCCT+TGG | + | chr6_1:7536158-7536177 | Msa0872150:intron | 55.0% | |
| TGTAGGCAATGCTGGCACAG+AGG | + | chr6_1:7536792-7536811 | Msa0872150:intron | 55.0% | |
| TGCTGGCACAGAGGCAATGT+TGG | + | chr6_1:7536801-7536820 | Msa0872150:CDS | 55.0% | |
| GTGCAAAGCACGTATGCTGG+TGG | + | chr6_1:7537068-7537087 | Msa0872150:CDS | 55.0% | |
| ! | ATCTGCTGCGGTGCCAGTTC+CGG | - | chr6_1:7533489-7533508 | None:intergenic | 60.0% |
| CATGTAGCAGCTCGCGGTGA+TGG | + | chr6_1:7534146-7534165 | Msa0872150:intron | 60.0% | |
| !! | CGCGGTGATGGTTTTTGCGG+TGG | + | chr6_1:7534158-7534177 | Msa0872150:intron | 60.0% |
| ! | CTGCGGTGCCAGTTCCGGTG+TGG | - | chr6_1:7533484-7533503 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 7533437 | 7537137 | 7533437 | ID=Msa0872150;Name=Msa0872150 |
| chr6_1 | mRNA | 7533437 | 7537137 | 7533437 | ID=Msa0872150-mRNA-1;Parent=Msa0872150;Name=Msa0872150-mRNA-1;_AED=0.27;_eAED=0.27;_QI=70|0.25|0.4|0.8|1|1|5|0|174 |
| chr6_1 | exon | 7533437 | 7533590 | 7533437 | ID=Msa0872150-mRNA-1:exon:2248;Parent=Msa0872150-mRNA-1 |
| chr6_1 | exon | 7533755 | 7533827 | 7533755 | ID=Msa0872150-mRNA-1:exon:2249;Parent=Msa0872150-mRNA-1 |
| chr6_1 | exon | 7534629 | 7534745 | 7534629 | ID=Msa0872150-mRNA-1:exon:2250;Parent=Msa0872150-mRNA-1 |
| chr6_1 | exon | 7536797 | 7536822 | 7536797 | ID=Msa0872150-mRNA-1:exon:2251;Parent=Msa0872150-mRNA-1 |
| chr6_1 | exon | 7536913 | 7537137 | 7536913 | ID=Msa0872150-mRNA-1:exon:2252;Parent=Msa0872150-mRNA-1 |
| chr6_1 | five_prime_UTR | 7533437 | 7533506 | 7533437 | ID=Msa0872150-mRNA-1:five_prime_utr;Parent=Msa0872150-mRNA-1 |
| chr6_1 | CDS | 7533507 | 7533590 | 7533507 | ID=Msa0872150-mRNA-1:cds;Parent=Msa0872150-mRNA-1 |
| chr6_1 | CDS | 7533755 | 7533827 | 7533755 | ID=Msa0872150-mRNA-1:cds;Parent=Msa0872150-mRNA-1 |
| chr6_1 | CDS | 7534629 | 7534745 | 7534629 | ID=Msa0872150-mRNA-1:cds;Parent=Msa0872150-mRNA-1 |
| chr6_1 | CDS | 7536797 | 7536822 | 7536797 | ID=Msa0872150-mRNA-1:cds;Parent=Msa0872150-mRNA-1 |
| chr6_1 | CDS | 7536913 | 7537137 | 7536913 | ID=Msa0872150-mRNA-1:cds;Parent=Msa0872150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
