Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953000 | XP_024640113.1 | 64.072 | 334 | 115 | 3 | 37 | 367 | 209 | 540 | 1.52e-134 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0523940 | Msa0953000 | 0.804417 | 2.182364e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953000 | MtrunA17_Chr5g0413371 | 64.072 | 334 | 115 | 3 | 37 | 367 | 209 | 540 | 1.97e-138 | 408 |
| Msa0953000 | MtrunA17_Chr1g0190521 | 35.714 | 154 | 95 | 3 | 210 | 360 | 193 | 345 | 2.01e-21 | 95.9 |
| Msa0953000 | MtrunA17_Chr4g0069321 | 33.987 | 153 | 98 | 2 | 217 | 367 | 190 | 341 | 2.24e-19 | 89.7 |
| Msa0953000 | MtrunA17_Chr1g0193171 | 32.692 | 156 | 102 | 2 | 214 | 367 | 186 | 340 | 1.22e-18 | 87.8 |
| Msa0953000 | MtrunA17_Chr1g0190511 | 33.117 | 154 | 99 | 3 | 210 | 360 | 88 | 240 | 1.18e-17 | 84.7 |
| Msa0953000 | MtrunA17_Chr7g0275141 | 26.752 | 157 | 112 | 2 | 204 | 358 | 13 | 168 | 1.98e-17 | 84.0 |
| Msa0953000 | MtrunA17_Chr4g0049281 | 33.913 | 115 | 74 | 1 | 214 | 326 | 9 | 123 | 2.45e-15 | 77.4 |
| Msa0953000 | MtrunA17_Chr6g0462901 | 29.032 | 186 | 120 | 5 | 167 | 347 | 364 | 542 | 8.58e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953000 | AT3G05850.1 | 34.615 | 156 | 99 | 3 | 214 | 367 | 207 | 361 | 2.14e-19 | 90.5 |
| Msa0953000 | AT1G06740.1 | 28.571 | 154 | 101 | 3 | 196 | 347 | 147 | 293 | 1.87e-15 | 78.2 |
Find 61 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACTAGTTACTATTTC+AGG | 0.183796 | 6_3:+48246028 | None:intergenic |
| TATTAATTGGTATTCTTATA+TGG | 0.197175 | 6_3:+48246149 | None:intergenic |
| ATATCAGAATCTGTATTAAT+TGG | 0.294812 | 6_3:+48246136 | None:intergenic |
| ATACCTCTATCAACATAAAT+AGG | 0.300833 | 6_3:+48245827 | None:intergenic |
| GATGTGGCATTTGAGTTCTT+TGG | 0.306474 | 6_3:+48245533 | None:intergenic |
| ATGCTCGCATATCTCATATT+TGG | 0.311514 | 6_3:+48245467 | None:intergenic |
| CGACGATATTTGTAGATTGT+TGG | 0.314772 | 6_3:-48246239 | Msa0953000:CDS |
| TTAGAACAAGGTTTATTGTT+TGG | 0.341573 | 6_3:-48245761 | Msa0953000:CDS |
| CTTGTATAACAAAATCTCTA+AGG | 0.350314 | 6_3:+48245714 | None:intergenic |
| TGAAAGGGAAGAGGGTGAAT+TGG | 0.351417 | 6_3:-48247752 | Msa0953000:CDS |
| TAAAGCTTAGTTACATTAGT+TGG | 0.399765 | 6_3:+48245410 | None:intergenic |
| GTGCTTCAGATGGTTGTTCT+TGG | 0.401737 | 6_3:-48245637 | Msa0953000:CDS |
| TCCATTTCTTTCTGCCATCC+AGG | 0.413387 | 6_3:-48246175 | Msa0953000:CDS |
| ATCCTCCCATTGTTGACTAC+TGG | 0.420788 | 6_3:+48247780 | None:intergenic |
| GTGCCTATTTATGTTGATAG+AGG | 0.438884 | 6_3:-48245830 | Msa0953000:CDS |
| ACTCAAATGCCACATCTACT+TGG | 0.459803 | 6_3:-48245526 | Msa0953000:CDS |
| TTATTTGACCATGTTTCTGA+TGG | 0.477799 | 6_3:-48245794 | Msa0953000:CDS |
| ACCTGGATGGCAGAAAGAAA+TGG | 0.478172 | 6_3:+48246174 | None:intergenic |
| GATGAGGATGAAAGGGAAGA+GGG | 0.478276 | 6_3:-48247760 | Msa0953000:CDS |
| CTTCAGATGGTTGTTCTTGG+CGG | 0.479204 | 6_3:-48245634 | Msa0953000:CDS |
| AAAATGAGAACAGTGATTAC+GGG | 0.482420 | 6_3:-48245913 | Msa0953000:CDS |
| GGATGAGGATGAAAGGGAAG+AGG | 0.492041 | 6_3:-48247761 | Msa0953000:CDS |
| GCTTGATTTAAACAGTCAAA+GGG | 0.499023 | 6_3:-48247823 | Msa0953000:intron |
| ATGGGAGGATGAGGATGAAA+GGG | 0.500749 | 6_3:-48247767 | Msa0953000:CDS |
| TTCATTTGTATGTTATGTTG+AGG | 0.508411 | 6_3:-48246084 | Msa0953000:CDS |
| TCAAGATACGAGTAACAGTC+AGG | 0.510043 | 6_3:+48246268 | None:intergenic |
| TATGTTGATAGAGGTATGAA+AGG | 0.516364 | 6_3:-48245821 | Msa0953000:CDS |
| CAAGAGTTGTTGGATAGGTA+TGG | 0.516705 | 6_3:-48245440 | Msa0953000:CDS |
| ACAGTCCAGTAGTCAACAAT+GGG | 0.528345 | 6_3:-48247785 | Msa0953000:CDS |
| TAGTCAACAATGGGAGGATG+AGG | 0.528403 | 6_3:-48247776 | Msa0953000:CDS |
| AGGTTTATTGTTTGGCGATG+TGG | 0.533650 | 6_3:-48245753 | Msa0953000:CDS |
| GAGCATGAGTCAAGAGTTGT+TGG | 0.542498 | 6_3:-48245450 | Msa0953000:CDS |
| ATTTAAACAGTCAAAGGGAA+TGG | 0.542902 | 6_3:-48247818 | Msa0953000:intron |
| TTCTTATATGGCTACCTGGA+TGG | 0.543799 | 6_3:+48246161 | None:intergenic |
| AGATTGTTGGATATTCCCAC+TGG | 0.544919 | 6_3:-48246226 | Msa0953000:CDS |
| AATGGGAGGATGAGGATGAA+AGG | 0.551413 | 6_3:-48247768 | Msa0953000:CDS |
| TCTTTCATCGTTGCATCCAG+TGG | 0.552741 | 6_3:+48246210 | None:intergenic |
| GGTATTCTTATATGGCTACC+TGG | 0.554745 | 6_3:+48246157 | None:intergenic |
| CATGCCTCTCCTACACCAGA+TGG | 0.554937 | 6_3:-48245608 | Msa0953000:CDS |
| ATGTTGATAGAGGTATGAAA+GGG | 0.555067 | 6_3:-48245820 | Msa0953000:CDS |
| TTGTATAACAAAATCTCTAA+GGG | 0.567899 | 6_3:+48245715 | None:intergenic |
| CTAGTGAGTCTGATGATGAA+TGG | 0.574075 | 6_3:-48246015 | Msa0953000:CDS |
| AAGGTCAGACAAGATAGTAA+AGG | 0.575927 | 6_3:-48245374 | Msa0953000:CDS |
| TGGCAGAAAGAAATGGAGAA+AGG | 0.584446 | 6_3:+48246181 | None:intergenic |
| TGAGTCAAGAGTTGTTGGAT+AGG | 0.585121 | 6_3:-48245445 | Msa0953000:CDS |
| GCCGAACCTCAACAAAATGA+AGG | 0.589637 | 6_3:-48245983 | Msa0953000:CDS |
| GACAGTCCAGTAGTCAACAA+TGG | 0.591391 | 6_3:-48247786 | Msa0953000:CDS |
| ACTGGATGCAACGATGAAAG+AGG | 0.593364 | 6_3:-48246208 | Msa0953000:CDS |
| ATGCCTCTCCTACACCAGAT+GGG | 0.593906 | 6_3:-48245607 | Msa0953000:CDS |
| CTTTCATCGTTGCATCCAGT+GGG | 0.594081 | 6_3:+48246211 | None:intergenic |
| TGTTGACTACTGGACTGTCA+TGG | 0.606282 | 6_3:+48247790 | None:intergenic |
| TGTTGCAATCCAAGTAGATG+TGG | 0.606717 | 6_3:+48245517 | None:intergenic |
| TTTCCCATCTGGTGTAGGAG+AGG | 0.620987 | 6_3:+48245604 | None:intergenic |
| ACTACTAAATGTGCTTCAGA+TGG | 0.626648 | 6_3:-48245647 | Msa0953000:CDS |
| GCTTTATCGTGCAAGAAACA+AGG | 0.627764 | 6_3:-48245393 | Msa0953000:CDS |
| ATCTTATACAAGAATGCACA+TGG | 0.636608 | 6_3:+48245558 | None:intergenic |
| GGAAAAGTGAAATTAGAACA+AGG | 0.637748 | 6_3:-48245773 | Msa0953000:CDS |
| TCAGGATCAACATCTTGTAG+TGG | 0.650620 | 6_3:+48246286 | None:intergenic |
| GTAGTAGTGTGAAAATGAGG+AGG | 0.658231 | 6_3:-48249146 | None:intergenic |
| GAACCTCAACAAAATGAAGG+AGG | 0.669152 | 6_3:-48245980 | Msa0953000:CDS |
| GTCCAGTAGTCAACAATGGG+AGG | 0.678277 | 6_3:-48247782 | Msa0953000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTATTTTTGGAAT+AGG | - | chr6_3:48247300-48247319 | Msa0953000:intron | 10.0% |
| !! | ATTAAACCAACATTATAAAA+GGG | + | chr6_3:48246261-48246280 | None:intergenic | 15.0% |
| !!! | TTTTATAATGTTGGTTTAAT+GGG | - | chr6_3:48246261-48246280 | Msa0953000:CDS | 15.0% |
| !! | ATTTCTCATATAAAAAATGT+TGG | + | chr6_3:48246905-48246924 | None:intergenic | 15.0% |
| !! | TATAAAAACAAAAATTAGTG+AGG | - | chr6_3:48247018-48247037 | Msa0953000:intron | 15.0% |
| !! | ATAAAAACAAAAATTAGTGA+GGG | - | chr6_3:48247019-48247038 | Msa0953000:intron | 15.0% |
| !! | TATTAATTGGTATTCTTATA+TGG | + | chr6_3:48248293-48248312 | None:intergenic | 15.0% |
| !! | CAAAAGAATTAAAAATGAAA+AGG | - | chr6_3:48248761-48248780 | Msa0953000:intron | 15.0% |
| !! | TCTAACTAATGTTTATAACT+CGG | - | chr6_3:48245450-48245469 | Msa0953000:CDS | 20.0% |
| !!! | TTTTATAGTGTTGGTTTAAT+GGG | + | chr6_3:48245988-48246007 | None:intergenic | 20.0% |
| !! | ATTAAACCAACACTATAAAA+GGG | - | chr6_3:48245988-48246007 | Msa0953000:CDS | 20.0% |
| !! | TTAAACCAACATTATAAAAG+GGG | + | chr6_3:48246260-48246279 | None:intergenic | 20.0% |
| !! | CATTAAACCAACATTATAAA+AGG | + | chr6_3:48246262-48246281 | None:intergenic | 20.0% |
| !!! | CTTTTATAATGTTGGTTTAA+TGG | - | chr6_3:48246260-48246279 | Msa0953000:CDS | 20.0% |
| !!! | TTTTTATAGCAGTAGTAATA+CGG | + | chr6_3:48247006-48247025 | None:intergenic | 20.0% |
| !! | ATACTAGGAAAAACAAAATT+AGG | + | chr6_3:48247150-48247169 | None:intergenic | 20.0% |
| !!! | AAAACTAAAAGTACAATACT+AGG | + | chr6_3:48247165-48247184 | None:intergenic | 20.0% |
| !! | AAAATGTTATAAAGAAAACG+AGG | + | chr6_3:48247197-48247216 | None:intergenic | 20.0% |
| !! | AAAAACCATTTGTAGAAATA+TGG | + | chr6_3:48247394-48247413 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTCAAAACTAGA+GGG | + | chr6_3:48247670-48247689 | None:intergenic | 20.0% |
| !! | TACAAATTAGGGTTTAAATT+TGG | + | chr6_3:48247752-48247771 | None:intergenic | 20.0% |
| !! | TTAACTCATAAACAACAATT+AGG | - | chr6_3:48247900-48247919 | Msa0953000:intron | 20.0% |
| !! | TAACTCATAAACAACAATTA+GGG | - | chr6_3:48247901-48247920 | Msa0953000:intron | 20.0% |
| !!! | TATCAACTTTTAATCACTTT+TGG | - | chr6_3:48248026-48248045 | Msa0953000:intron | 20.0% |
| !!! | ACAAAATATGTGAGAATTTT+GGG | + | chr6_3:48248052-48248071 | None:intergenic | 20.0% |
| !!! | AACAAAATATGTGAGAATTT+TGG | + | chr6_3:48248053-48248072 | None:intergenic | 20.0% |
| !! | ATATCAGAATCTGTATTAAT+TGG | + | chr6_3:48248306-48248325 | None:intergenic | 20.0% |
| !! | TTGTATAACAAAATCTCTAA+GGG | + | chr6_3:48248727-48248746 | None:intergenic | 20.0% |
| ! | AGGTAAAAGCTAGTATATAT+GGG | - | chr6_3:48245313-48245332 | Msa0953000:CDS | 25.0% |
| ! | ACATGCTAAATGATATAAGT+TGG | - | chr6_3:48245425-48245444 | Msa0953000:CDS | 25.0% |
| ! | ATTAATTGTTCAAGTCAAGA+CGG | - | chr6_3:48245791-48245810 | Msa0953000:CDS | 25.0% |
| !!! | CTTTTATAGTGTTGGTTTAA+TGG | + | chr6_3:48245989-48246008 | None:intergenic | 25.0% |
| ! | CATTAAACCAACACTATAAA+AGG | - | chr6_3:48245987-48246006 | Msa0953000:CDS | 25.0% |
| ! | TTAAACCAACACTATAAAAG+GGG | - | chr6_3:48245989-48246008 | Msa0953000:CDS | 25.0% |
| !!! | AACACAAGTTTTATTACAAC+AGG | + | chr6_3:48246128-48246147 | None:intergenic | 25.0% |
| ! | ATTGATTATTCAAGTCAAGA+CGG | + | chr6_3:48246458-48246477 | None:intergenic | 25.0% |
| !!! | TACATGGTTTTTTTTTCTTG+TGG | + | chr6_3:48246868-48246887 | None:intergenic | 25.0% |
| ! | AGGAAAAACAAAATTAGGAA+GGG | + | chr6_3:48247145-48247164 | None:intergenic | 25.0% |
| ! | TAGGAAAAACAAAATTAGGA+AGG | + | chr6_3:48247146-48247165 | None:intergenic | 25.0% |
| ! | CTCAAAAGTTGTCATATAAA+TGG | - | chr6_3:48247223-48247242 | Msa0953000:intron | 25.0% |
| !!! | TGTATATGTTTTCGTTTTTG+TGG | - | chr6_3:48247353-48247372 | Msa0953000:intron | 25.0% |
| !! | TGTTTCCATATTTCTACAAA+TGG | - | chr6_3:48247386-48247405 | Msa0953000:intron | 25.0% |
| ! | GTTATGAAATAATGACTTAG+TGG | - | chr6_3:48247419-48247438 | Msa0953000:intron | 25.0% |
| ! | GTTATGAAATAATGACTTAG+TGG | + | chr6_3:48247419-48247438 | None:intergenic | 25.0% |
| ! | GTCATTATTTCATAACATGA+AGG | - | chr6_3:48247583-48247602 | Msa0953000:intron | 25.0% |
| !!! | ATGTTTTTTCAAAACTAGAG+GGG | + | chr6_3:48247669-48247688 | None:intergenic | 25.0% |
| !!! | GAATGTTTTTTCAAAACTAG+AGG | + | chr6_3:48247671-48247690 | None:intergenic | 25.0% |
| ! | GGTTAACAGTGTTAAAAAAA+GGG | + | chr6_3:48247698-48247717 | None:intergenic | 25.0% |
| ! | AGGTTAACAGTGTTAAAAAA+AGG | + | chr6_3:48247699-48247718 | None:intergenic | 25.0% |
| ! | TTGGGAGAAAATACAAATTA+GGG | + | chr6_3:48247763-48247782 | None:intergenic | 25.0% |
| ! | TTTGGGAGAAAATACAAATT+AGG | + | chr6_3:48247764-48247783 | None:intergenic | 25.0% |
| !! | GTTTCATATTCTTGACTTTT+GGG | + | chr6_3:48247781-48247800 | None:intergenic | 25.0% |
| !!! | TTCTCACATATTTTGTTGTT+TGG | - | chr6_3:48248056-48248075 | Msa0953000:intron | 25.0% |
| !!! | TTGTTGTTTGGATATGTTTA+AGG | - | chr6_3:48248068-48248087 | Msa0953000:intron | 25.0% |
| ! | TTATGTATATGGAGAATAAC+AGG | - | chr6_3:48248095-48248114 | Msa0953000:intron | 25.0% |
| ! | TTCATTTGTATGTTATGTTG+AGG | - | chr6_3:48248355-48248374 | Msa0953000:intron | 25.0% |
| ! | AAAAATGAGAACAGTGATTA+CGG | - | chr6_3:48248525-48248544 | Msa0953000:intron | 25.0% |
| ! | ATACCTCTATCAACATAAAT+AGG | + | chr6_3:48248615-48248634 | None:intergenic | 25.0% |
| ! | TTAGAACAAGGTTTATTGTT+TGG | - | chr6_3:48248678-48248697 | Msa0953000:intron | 25.0% |
| ! | CTTGTATAACAAAATCTCTA+AGG | + | chr6_3:48248728-48248747 | None:intergenic | 25.0% |
| !!! | TAGAGATTTTGTTATACAAG+AGG | - | chr6_3:48248728-48248747 | Msa0953000:intron | 25.0% |
| !!! | AGAGATTTTGTTATACAAGA+GGG | - | chr6_3:48248729-48248748 | Msa0953000:intron | 25.0% |
| ! | TAAAGCTTAGTTACATTAGT+TGG | + | chr6_3:48249032-48249051 | None:intergenic | 25.0% |
| GAGGTAAAAGCTAGTATATA+TGG | - | chr6_3:48245312-48245331 | Msa0953000:CDS | 30.0% | |
| GGTAAAAGCTAGTATATATG+GGG | - | chr6_3:48245314-48245333 | Msa0953000:CDS | 30.0% | |
| TTTCCATCATAATTGTTCAG+CGG | + | chr6_3:48245368-48245387 | None:intergenic | 30.0% | |
| ATTTAAACAGTCAAAGGGAA+TGG | + | chr6_3:48246621-48246640 | None:intergenic | 30.0% | |
| GCTTGATTTAAACAGTCAAA+GGG | + | chr6_3:48246616-48246635 | None:intergenic | 30.0% | |
| ! | CTTGACTTGAACAATTAATC+TGG | + | chr6_3:48245790-48245809 | None:intergenic | 30.0% |
| ! | GATACACTATTTTCACTCTA+TGG | - | chr6_3:48246206-48246225 | Msa0953000:CDS | 30.0% |
| CATTATAAAAGGGGAACATT+TGG | + | chr6_3:48246251-48246270 | None:intergenic | 30.0% | |
| ! | ATGTTCCCCTTTTATAATGT+TGG | - | chr6_3:48246252-48246271 | Msa0953000:CDS | 30.0% |
| ATTGATTGTTCAAGTCAAGA+CGG | + | chr6_3:48246511-48246530 | None:intergenic | 30.0% | |
| GCTTGATTTAAACAGTCAAA+GGG | - | chr6_3:48246616-48246635 | Msa0953000:intron | 30.0% | |
| ATTTAAACAGTCAAAGGGAA+TGG | - | chr6_3:48246621-48246640 | Msa0953000:intron | 30.0% | |
| ATCTGTGTCATACATAAGAA+AGG | + | chr6_3:48246828-48246847 | None:intergenic | 30.0% | |
| TTATGTATGACACAGATAAC+TGG | - | chr6_3:48246831-48246850 | Msa0953000:intron | 30.0% | |
| TTTAGTGAAGGAATTAGAGA+GGG | + | chr6_3:48247071-48247090 | None:intergenic | 30.0% | |
| AAAATCCTTCACAAATTCCT+TGG | + | chr6_3:48247102-48247121 | None:intergenic | 30.0% | |
| ! | TTTTATTAAAACCTCAGAGG+AGG | + | chr6_3:48247635-48247654 | None:intergenic | 30.0% |
| ! | GTCTTTTATTAAAACCTCAG+AGG | + | chr6_3:48247638-48247657 | None:intergenic | 30.0% |
| TAACAGTGTTAAAAAAAGGG+AGG | + | chr6_3:48247695-48247714 | None:intergenic | 30.0% | |
| ! | CGTTTCATATTCTTGACTTT+TGG | + | chr6_3:48247782-48247801 | None:intergenic | 30.0% |
| ! | CAGAGTGAAATGAATTTTGA+TGG | + | chr6_3:48247808-48247827 | None:intergenic | 30.0% |
| TTGTTTGGATATGTTTAAGG+TGG | - | chr6_3:48248071-48248090 | Msa0953000:intron | 30.0% | |
| ! | TGTTTGGATATGTTTAAGGT+GGG | - | chr6_3:48248072-48248091 | Msa0953000:intron | 30.0% |
| !! | TTTAAGGTGGGTTATGTATA+TGG | - | chr6_3:48248084-48248103 | Msa0953000:intron | 30.0% |
| AAAATGAGAACAGTGATTAC+GGG | - | chr6_3:48248526-48248545 | Msa0953000:intron | 30.0% | |
| ! | TATGTTGATAGAGGTATGAA+AGG | - | chr6_3:48248618-48248637 | Msa0953000:intron | 30.0% |
| ! | ATGTTGATAGAGGTATGAAA+GGG | - | chr6_3:48248619-48248638 | Msa0953000:intron | 30.0% |
| ! | TTATTTGACCATGTTTCTGA+TGG | - | chr6_3:48248645-48248664 | Msa0953000:intron | 30.0% |
| GGAAAAGTGAAATTAGAACA+AGG | - | chr6_3:48248666-48248685 | Msa0953000:intron | 30.0% | |
| ATCTTATACAAGAATGCACA+TGG | + | chr6_3:48248884-48248903 | None:intergenic | 30.0% | |
| AAAAGCTAGTATATATGGGG+AGG | - | chr6_3:48245317-48245336 | Msa0953000:CDS | 35.0% | |
| TATGGGGAGGAAAATAACAA+AGG | - | chr6_3:48245330-48245349 | Msa0953000:CDS | 35.0% | |
| ATGGGGAGGAAAATAACAAA+GGG | - | chr6_3:48245331-48245350 | Msa0953000:CDS | 35.0% | |
| ! | AAAATAACAAAGGGTGTGGT+GGG | - | chr6_3:48245340-48245359 | Msa0953000:CDS | 35.0% |
| TCGGTCAAGAATTAGTTACT+TGG | - | chr6_3:48245469-48245488 | Msa0953000:CDS | 35.0% | |
| GTCAAGAATTAGTTACTTGG+TGG | - | chr6_3:48245472-48245491 | Msa0953000:CDS | 35.0% | |
| TATGAGTCGATTGAGAAAAG+TGG | - | chr6_3:48245507-48245526 | Msa0953000:CDS | 35.0% | |
| GGCTTGATTTAAACAGTCAA+AGG | + | chr6_3:48246615-48246634 | None:intergenic | 35.0% | |
| CTGTTTAAATCAAGCCAAGA+CGG | - | chr6_3:48245691-48245710 | Msa0953000:CDS | 35.0% | |
| ACTGATTGTTCAAGTCAAGA+CGG | - | chr6_3:48245744-48245763 | Msa0953000:CDS | 35.0% | |
| ACTTGAACAATTAATCTGGC+TGG | + | chr6_3:48245786-48245805 | None:intergenic | 35.0% | |
| ! | TTGGTTGTCTGTTTTCTGTA+CGG | + | chr6_3:48246334-48246353 | None:intergenic | 35.0% |
| GAAAACAGACAACCAATAGA+AGG | - | chr6_3:48245919-48245938 | Msa0953000:CDS | 35.0% | |
| ! | ATGTTCCCCTTTTATAGTGT+TGG | + | chr6_3:48245997-48246016 | None:intergenic | 35.0% |
| CACTATAAAAGGGGAACATT+TGG | - | chr6_3:48245998-48246017 | Msa0953000:CDS | 35.0% | |
| GGAACATTTGGATGTTTGAT+GGG | - | chr6_3:48246010-48246029 | Msa0953000:CDS | 35.0% | |
| ! | GATACACTGTTTTCACTCTA+TGG | + | chr6_3:48246171-48246190 | None:intergenic | 35.0% |
| GGAACATTTGGATGTTTGAT+GGG | + | chr6_3:48246010-48246029 | None:intergenic | 35.0% | |
| ! | GCTCTGGATCACAATTTAAT+GGG | + | chr6_3:48246308-48246327 | None:intergenic | 35.0% |
| GAAAACAGACAACCAATAGA+AGG | + | chr6_3:48245919-48245938 | None:intergenic | 35.0% | |
| ! | TTGGTTGTCTGTTTTCTGTA+CGG | - | chr6_3:48246334-48246353 | Msa0953000:intron | 35.0% |
| ! | CTTGACTTGAACAATCAATC+TGG | - | chr6_3:48246512-48246531 | Msa0953000:intron | 35.0% |
| CTGTTTAAATCAAGCCAAGA+CGG | + | chr6_3:48245691-48245710 | None:intergenic | 35.0% | |
| GGCTTGATTTAAACAGTCAA+AGG | - | chr6_3:48246615-48246634 | Msa0953000:intron | 35.0% | |
| TGAATTGGATAAGTTGTTGG+TGG | - | chr6_3:48246702-48246721 | Msa0953000:intron | 35.0% | |
| TTGCAAGAAACAAAACTAGC+AGG | - | chr6_3:48246790-48246809 | Msa0953000:intron | 35.0% | |
| TGCAAGAAACAAAACTAGCA+GGG | - | chr6_3:48246791-48246810 | Msa0953000:intron | 35.0% | |
| GGATGTGTTAAAGAACTACA+TGG | + | chr6_3:48246884-48246903 | None:intergenic | 35.0% | |
| TTAGTGAGGGAAATTTAGAG+AGG | - | chr6_3:48247032-48247051 | Msa0953000:intron | 35.0% | |
| TAGTGAGGGAAATTTAGAGA+GGG | - | chr6_3:48247033-48247052 | Msa0953000:intron | 35.0% | |
| CTTTAGTGAAGGAATTAGAG+AGG | + | chr6_3:48247072-48247091 | None:intergenic | 35.0% | |
| TTAGGAAGGGAAATTAGTGA+CGG | + | chr6_3:48247132-48247151 | None:intergenic | 35.0% | |
| ATAGGAAGGTGAAAGACTTA+AGG | + | chr6_3:48247453-48247472 | None:intergenic | 35.0% | |
| TTAAGGATGGACATCTAATG+AGG | - | chr6_3:48247519-48247538 | Msa0953000:intron | 35.0% | |
| TAAGGATGGACATCTAATGA+GGG | - | chr6_3:48247520-48247539 | Msa0953000:intron | 35.0% | |
| ATCTAATGAGGGTTATAGGA+AGG | - | chr6_3:48247531-48247550 | Msa0953000:intron | 35.0% | |
| AAACAAGAAGCAAGAGACAA+GGG | + | chr6_3:48247875-48247894 | None:intergenic | 35.0% | |
| ! | TTTTTCCATCGTTTGTCATC+TGG | - | chr6_3:48247983-48248002 | Msa0953000:intron | 35.0% |
| CACATATTCTACATTGTGCA+GGG | - | chr6_3:48248118-48248137 | Msa0953000:intron | 35.0% | |
| ACATATTCTACATTGTGCAG+GGG | - | chr6_3:48248119-48248138 | Msa0953000:intron | 35.0% | |
| CGACGATATTTGTAGATTGT+TGG | - | chr6_3:48248200-48248219 | Msa0953000:intron | 35.0% | |
| GACTCACTAGTTACTATTTC+AGG | + | chr6_3:48248414-48248433 | None:intergenic | 35.0% | |
| ! | TCCTTCATTTTGTTGAGGTT+CGG | + | chr6_3:48248460-48248479 | None:intergenic | 35.0% |
| ! | GTGCCTATTTATGTTGATAG+AGG | - | chr6_3:48248609-48248628 | Msa0953000:intron | 35.0% |
| !! | TCACTTTTCCATCAGAAACA+TGG | + | chr6_3:48248656-48248675 | None:intergenic | 35.0% |
| ACTACTAAATGTGCTTCAGA+TGG | - | chr6_3:48248792-48248811 | Msa0953000:intron | 35.0% | |
| ! | ATCTTGTATGTTTTCCCATC+TGG | + | chr6_3:48248849-48248868 | None:intergenic | 35.0% |
| ATGCTCGCATATCTCATATT+TGG | + | chr6_3:48248975-48248994 | None:intergenic | 35.0% | |
| AAGGTCAGACAAGATAGTAA+AGG | - | chr6_3:48249065-48249084 | Msa0953000:intron | 35.0% | |
| GAGGAAAATAACAAAGGGTG+TGG | - | chr6_3:48245336-48245355 | Msa0953000:CDS | 40.0% | |
| ! | GAAAATAACAAAGGGTGTGG+TGG | - | chr6_3:48245339-48245358 | Msa0953000:CDS | 40.0% |
| ! | AAATAACAAAGGGTGTGGTG+GGG | - | chr6_3:48245341-48245360 | Msa0953000:CDS | 40.0% |
| ! | ATTAGTTACTTGGTGGACGA+CGG | - | chr6_3:48245479-48245498 | Msa0953000:CDS | 40.0% |
| ATTGAGAAAAGTGGACCGAT+CGG | - | chr6_3:48245516-48245535 | Msa0953000:CDS | 40.0% | |
| AAGATCAACTCATCCGTATC+AGG | + | chr6_3:48245878-48245897 | None:intergenic | 40.0% | |
| ! | GCTCTGGATCACAACTTAAT+GGG | - | chr6_3:48245941-48245960 | Msa0953000:CDS | 40.0% |
| GGGAACATTTGGATGTTTGA+TGG | - | chr6_3:48246009-48246028 | Msa0953000:CDS | 40.0% | |
| GGGAACATTTGGATGTTTGA+TGG | + | chr6_3:48246009-48246028 | None:intergenic | 40.0% | |
| !! | GGCTCTGGATCACAATTTAA+TGG | + | chr6_3:48246309-48246328 | None:intergenic | 40.0% |
| ACTTGAACAATCAATCTGGC+TGG | - | chr6_3:48246516-48246535 | Msa0953000:intron | 40.0% | |
| ACAGACTGATTGTTCAAGTC+AGG | + | chr6_3:48246562-48246581 | None:intergenic | 40.0% | |
| ACAGTCCAGTAGTCAACAAT+GGG | - | chr6_3:48246654-48246673 | Msa0953000:intron | 40.0% | |
| GGGTGAATTGGATAAGTTGT+TGG | - | chr6_3:48246699-48246718 | Msa0953000:intron | 40.0% | |
| TTGGTCGCAAACTTTAGTGA+AGG | + | chr6_3:48247083-48247102 | None:intergenic | 40.0% | |
| TTCACTAAAGTTTGCGACCA+AGG | - | chr6_3:48247082-48247101 | Msa0953000:intron | 40.0% | |
| TAGGAAGGGAAATTAGTGAC+GGG | + | chr6_3:48247131-48247150 | None:intergenic | 40.0% | |
| GAAGGTGAAAGACTTAAGGA+TGG | + | chr6_3:48247449-48247468 | None:intergenic | 40.0% | |
| CACTAATGGAGGTTATAGGA+AGG | + | chr6_3:48247467-48247486 | None:intergenic | 40.0% | |
| GTCTCACTAATGGAGGTTAT+AGG | + | chr6_3:48247471-48247490 | None:intergenic | 40.0% | |
| ACCTCCATTAGTGAGACTAA+TGG | - | chr6_3:48247474-48247493 | Msa0953000:intron | 40.0% | |
| CCTCCATTAGTGAGACTAAT+GGG | - | chr6_3:48247475-48247494 | Msa0953000:intron | 40.0% | |
| CTCCATTAGTGAGACTAATG+GGG | - | chr6_3:48247476-48247495 | Msa0953000:intron | 40.0% | |
| TCCATTAGTGAGACTAATGG+GGG | - | chr6_3:48247477-48247496 | Msa0953000:intron | 40.0% | |
| GGACATCTAATGAGGGTTAT+AGG | - | chr6_3:48247527-48247546 | Msa0953000:intron | 40.0% | |
| TAATGAGGGTTATAGGAAGG+TGG | - | chr6_3:48247534-48247553 | Msa0953000:intron | 40.0% | |
| AATGAGGGTTATAGGAAGGT+GGG | - | chr6_3:48247535-48247554 | Msa0953000:intron | 40.0% | |
| GAAACAAGAAGCAAGAGACA+AGG | + | chr6_3:48247876-48247895 | None:intergenic | 40.0% | |
| ACAAACCAGATGACAAACGA+TGG | + | chr6_3:48247991-48248010 | None:intergenic | 40.0% | |
| GCACATATTCTACATTGTGC+AGG | - | chr6_3:48248117-48248136 | Msa0953000:intron | 40.0% | |
| TCAGGATCAACATCTTGTAG+TGG | + | chr6_3:48248156-48248175 | None:intergenic | 40.0% | |
| TCAAGATACGAGTAACAGTC+AGG | + | chr6_3:48248174-48248193 | None:intergenic | 40.0% | |
| AGATTGTTGGATATTCCCAC+TGG | - | chr6_3:48248213-48248232 | Msa0953000:intron | 40.0% | |
| TGGCAGAAAGAAATGGAGAA+AGG | + | chr6_3:48248261-48248280 | None:intergenic | 40.0% | |
| TTCTTATATGGCTACCTGGA+TGG | + | chr6_3:48248281-48248300 | None:intergenic | 40.0% | |
| GGTATTCTTATATGGCTACC+TGG | + | chr6_3:48248285-48248304 | None:intergenic | 40.0% | |
| ! | CTAGTGAGTCTGATGATGAA+TGG | - | chr6_3:48248424-48248443 | Msa0953000:intron | 40.0% |
| ! | TTCATTTTGTTGAGGTTCGG+CGG | + | chr6_3:48248457-48248476 | None:intergenic | 40.0% |
| GAACCTCAACAAAATGAAGG+AGG | - | chr6_3:48248459-48248478 | Msa0953000:intron | 40.0% | |
| AGGTTTATTGTTTGGCGATG+TGG | - | chr6_3:48248686-48248705 | Msa0953000:intron | 40.0% | |
| ! | TATGTTTTCCCATCTGGTGT+AGG | + | chr6_3:48248843-48248862 | None:intergenic | 40.0% |
| ! | GATGTGGCATTTGAGTTCTT+TGG | + | chr6_3:48248909-48248928 | None:intergenic | 40.0% |
| ACTCAAATGCCACATCTACT+TGG | - | chr6_3:48248913-48248932 | Msa0953000:intron | 40.0% | |
| TGTTGCAATCCAAGTAGATG+TGG | + | chr6_3:48248925-48248944 | None:intergenic | 40.0% | |
| TGAGTCAAGAGTTGTTGGAT+AGG | - | chr6_3:48248994-48249013 | Msa0953000:intron | 40.0% | |
| CAAGAGTTGTTGGATAGGTA+TGG | - | chr6_3:48248999-48249018 | Msa0953000:intron | 40.0% | |
| GCTTTATCGTGCAAGAAACA+AGG | - | chr6_3:48249046-48249065 | Msa0953000:intron | 40.0% | |
| ! | AATAACAAAGGGTGTGGTGG+GGG | - | chr6_3:48245342-48245361 | Msa0953000:CDS | 45.0% |
| TTGAGAAAAGTGGACCGATC+GGG | - | chr6_3:48245517-48245536 | Msa0953000:CDS | 45.0% | |
| CGGTTGTTCTTTAACCCGAT+CGG | + | chr6_3:48245534-48245553 | None:intergenic | 45.0% | |
| ACAAACGTCTACGCCTTAAC+AGG | - | chr6_3:48245618-48245637 | Msa0953000:CDS | 45.0% | |
| ! | AGCACGTTTTCAGTCAACGA+CGG | - | chr6_3:48245721-48245740 | Msa0953000:CDS | 45.0% |
| AGACAACCAATAGAAGGCTC+TGG | - | chr6_3:48245925-48245944 | Msa0953000:CDS | 45.0% | |
| TGTGATCCAGAGCCTTCTAT+TGG | + | chr6_3:48246315-48246334 | None:intergenic | 45.0% | |
| !! | GGCTCTGGATCACAACTTAA+TGG | - | chr6_3:48245940-48245959 | Msa0953000:CDS | 45.0% |
| GGCCTTGAATGATCAGAGAA+AGG | - | chr6_3:48245962-48245981 | Msa0953000:CDS | 45.0% | |
| GGCCTTTCTCTGATCATTCA+AGG | + | chr6_3:48246282-48246301 | None:intergenic | 45.0% | |
| GGCCTTTCTCTGATCATTCA+AGG | - | chr6_3:48246282-48246301 | Msa0953000:CDS | 45.0% | |
| GGCCTTGAATGATCAGAGAA+AGG | + | chr6_3:48245962-48245981 | None:intergenic | 45.0% | |
| TGTGATCCAGAGCCTTCTAT+TGG | - | chr6_3:48246315-48246334 | Msa0953000:intron | 45.0% | |
| AGACAACCAATAGAAGGCTC+TGG | + | chr6_3:48245925-48245944 | None:intergenic | 45.0% | |
| AAGATCAACTCATCCGTACC+AGG | - | chr6_3:48246371-48246390 | Msa0953000:intron | 45.0% | |
| ! | TGTTGACTACTGGACTGTCA+TGG | + | chr6_3:48246652-48246671 | None:intergenic | 45.0% |
| GACAGTCCAGTAGTCAACAA+TGG | - | chr6_3:48246653-48246672 | Msa0953000:intron | 45.0% | |
| ! | ATCCTCCCATTGTTGACTAC+TGG | + | chr6_3:48246662-48246681 | None:intergenic | 45.0% |
| TAGTCAACAATGGGAGGATG+AGG | - | chr6_3:48246663-48246682 | Msa0953000:intron | 45.0% | |
| AATGGGAGGATGAGGATGAA+AGG | - | chr6_3:48246671-48246690 | Msa0953000:intron | 45.0% | |
| ATGGGAGGATGAGGATGAAA+GGG | - | chr6_3:48246672-48246691 | Msa0953000:intron | 45.0% | |
| GATGAGGATGAAAGGGAAGA+GGG | - | chr6_3:48246679-48246698 | Msa0953000:intron | 45.0% | |
| TGAAAGGGAAGAGGGTGAAT+TGG | - | chr6_3:48246687-48246706 | Msa0953000:intron | 45.0% | |
| ATGCGCAGACAAATAGTGCA+TGG | + | chr6_3:48246740-48246759 | None:intergenic | 45.0% | |
| TGCGACCAAGGAATTTGTGA+AGG | - | chr6_3:48247094-48247113 | Msa0953000:intron | 45.0% | |
| ! | CCCATTAGTCTCACTAATGG+AGG | + | chr6_3:48247478-48247497 | None:intergenic | 45.0% |
| ! | ACCCCCATTAGTCTCACTAA+TGG | + | chr6_3:48247481-48247500 | None:intergenic | 45.0% |
| GTGAGACTAATGGGGGTTAT+AGG | - | chr6_3:48247484-48247503 | Msa0953000:intron | 45.0% | |
| GACTAATGGGGGTTATAGGA+AGG | - | chr6_3:48247488-48247507 | Msa0953000:intron | 45.0% | |
| TAATGGGGGTTATAGGAAGG+TGG | - | chr6_3:48247491-48247510 | Msa0953000:intron | 45.0% | |
| AATGGGGGTTATAGGAAGGT+GGG | - | chr6_3:48247492-48247511 | Msa0953000:intron | 45.0% | |
| ATAGGAAGGTGGGAGACTTA+AGG | - | chr6_3:48247502-48247521 | Msa0953000:intron | 45.0% | |
| ATAGGAAGGTGGGAGACTTA+AGG | - | chr6_3:48247502-48247521 | Msa0953000:intron | 45.0% | |
| GTAGCAAGAAAACGTCAGTC+AGG | + | chr6_3:48247719-48247738 | None:intergenic | 45.0% | |
| GAGATGATGTCTATGATGGC+TGG | + | chr6_3:48247955-48247974 | None:intergenic | 45.0% | |
| GTGCGAGATGATGTCTATGA+TGG | + | chr6_3:48247959-48247978 | None:intergenic | 45.0% | |
| CTTTCATCGTTGCATCCAGT+GGG | + | chr6_3:48248231-48248250 | None:intergenic | 45.0% | |
| TCTTTCATCGTTGCATCCAG+TGG | + | chr6_3:48248232-48248251 | None:intergenic | 45.0% | |
| ACTGGATGCAACGATGAAAG+AGG | - | chr6_3:48248231-48248250 | Msa0953000:intron | 45.0% | |
| TCCATTTCTTTCTGCCATCC+AGG | - | chr6_3:48248264-48248283 | Msa0953000:intron | 45.0% | |
| ACCTGGATGGCAGAAAGAAA+TGG | + | chr6_3:48248268-48248287 | None:intergenic | 45.0% | |
| GCCGAACCTCAACAAAATGA+AGG | - | chr6_3:48248456-48248475 | Msa0953000:intron | 45.0% | |
| ! | TCGCCTCCTTCATTTTGTTG+AGG | + | chr6_3:48248465-48248484 | None:intergenic | 45.0% |
| GTGCTTCAGATGGTTGTTCT+TGG | - | chr6_3:48248802-48248821 | Msa0953000:intron | 45.0% | |
| CTTCAGATGGTTGTTCTTGG+CGG | - | chr6_3:48248805-48248824 | Msa0953000:intron | 45.0% | |
| GAGCATGAGTCAAGAGTTGT+TGG | - | chr6_3:48248989-48249008 | Msa0953000:intron | 45.0% | |
| ! | AAAGCAGAAAAAGCGCAAGC+TGG | + | chr6_3:48249119-48249138 | None:intergenic | 45.0% |
| !! | AAAATAAAAATAAACATAAA+AGG | + | chr6_3:48247294-48247313 | None:intergenic | 5.0% |
| !!! | TTTATGTTTATTTTTATTTT+TGG | - | chr6_3:48247294-48247313 | Msa0953000:intron | 5.0% |
| GGGCCGCTGAACAATTATGA+TGG | - | chr6_3:48245362-48245381 | Msa0953000:CDS | 50.0% | |
| ! | TTACTTGGTGGACGACGGAT+TGG | - | chr6_3:48245484-48245503 | Msa0953000:CDS | 50.0% |
| ACAACCGTCTACGCCTTAAC+AGG | - | chr6_3:48245547-48245566 | Msa0953000:CDS | 50.0% | |
| ACCAAGCGTCAAGCCTGTTA+AGG | + | chr6_3:48245634-48245653 | None:intergenic | 50.0% | |
| TTAACAGGCTTGACGCTTGG+TGG | - | chr6_3:48245633-48245652 | Msa0953000:CDS | 50.0% | |
| TGACTGAAAACGTGCTGAGC+TGG | + | chr6_3:48246585-48246604 | None:intergenic | 50.0% | |
| TCGATTCCATGCGCCTGATA+CGG | - | chr6_3:48245862-48245881 | Msa0953000:CDS | 50.0% | |
| GTTGATCTTTAGTCCACGCG+CGG | - | chr6_3:48245889-48245908 | Msa0953000:CDS | 50.0% | |
| GTTGATCTTAAGTCCACGCG+CGG | + | chr6_3:48246360-48246379 | None:intergenic | 50.0% | |
| TGACTGAAGACATGCTGAGC+TGG | - | chr6_3:48246485-48246504 | Msa0953000:intron | 50.0% | |
| TGACTGAAAACGTGCTGAGC+TGG | - | chr6_3:48246585-48246604 | Msa0953000:intron | 50.0% | |
| GTCCAGTAGTCAACAATGGG+AGG | - | chr6_3:48246657-48246676 | Msa0953000:intron | 50.0% | |
| GGATGAGGATGAAAGGGAAG+AGG | - | chr6_3:48246678-48246697 | Msa0953000:intron | 50.0% | |
| GAAGGTGGGAGACTTAAGGA+TGG | - | chr6_3:48247506-48247525 | Msa0953000:intron | 50.0% | |
| GAAGGTGGGAGACTTAAGGA+TGG | - | chr6_3:48247506-48247525 | Msa0953000:intron | 50.0% | |
| AATTGCACTCACCTCCTCTG+AGG | - | chr6_3:48247621-48247640 | Msa0953000:intron | 50.0% | |
| !!! | GGTGTGTTTTGGTGGAAAGC+TGG | + | chr6_3:48247842-48247861 | None:intergenic | 50.0% |
| !! | AGAGGCAAGGTGTGTTTTGG+TGG | + | chr6_3:48247850-48247869 | None:intergenic | 50.0% |
| ATGCCTCTCCTACACCAGAT+GGG | - | chr6_3:48248832-48248851 | Msa0953000:intron | 50.0% | |
| TTTCCCATCTGGTGTAGGAG+AGG | + | chr6_3:48248838-48248857 | None:intergenic | 50.0% | |
| CGAGCCTGTTAAGGCGTAGA+CGG | + | chr6_3:48245554-48245573 | None:intergenic | 55.0% | |
| !! | ACCAAGCGTCGAGCCTGTTA+AGG | + | chr6_3:48245563-48245582 | None:intergenic | 55.0% |
| TTAACAGGCTCGACGCTTGG+TGG | - | chr6_3:48245562-48245581 | Msa0953000:CDS | 55.0% | |
| GCCTTAACAGGCTTGACGCT+TGG | - | chr6_3:48245630-48245649 | Msa0953000:CDS | 55.0% | |
| CGTCTTCAGCCAGCTCAGTA+CGG | - | chr6_3:48245825-48245844 | Msa0953000:CDS | 55.0% | |
| GTCAGTCATCCGTACTGAGC+TGG | + | chr6_3:48245837-48245856 | None:intergenic | 55.0% | |
| ACTCATCCGTATCAGGCGCA+TGG | + | chr6_3:48245871-48245890 | None:intergenic | 55.0% | |
| GTGCTCTTGAGACTCCACCT+AGG | - | chr6_3:48246082-48246101 | Msa0953000:CDS | 55.0% | |
| GTTGCTCAGTGAGACGTCCT+AGG | + | chr6_3:48246102-48246121 | None:intergenic | 55.0% | |
| CGTCTTCAGCCAGCTCAGTA+CGG | + | chr6_3:48245825-48245844 | None:intergenic | 55.0% | |
| ! | GCGAGAGGCAAGGTGTGTTT+TGG | + | chr6_3:48247853-48247872 | None:intergenic | 55.0% |
| AAGCAAGAGACAAGGGCGAG+AGG | + | chr6_3:48247868-48247887 | None:intergenic | 55.0% | |
| CATGCCTCTCCTACACCAGA+TGG | - | chr6_3:48248831-48248850 | Msa0953000:intron | 55.0% | |
| ! | CAGAAAAAGCGCAAGCTGGC+AGG | + | chr6_3:48249115-48249134 | None:intergenic | 55.0% |
| GCCTTAACAGGCTCGACGCT+TGG | - | chr6_3:48245559-48245578 | Msa0953000:CDS | 60.0% | |
| !! | ACGCTTGGTGGACTGTGGAC+TGG | - | chr6_3:48245574-48245593 | Msa0953000:CDS | 60.0% |
| !! | TGGTGGACTGTGGACTGGCA+TGG | - | chr6_3:48245579-48245598 | Msa0953000:CDS | 60.0% |
| !! | GCTTGACGCTTGGTGGACTG+TGG | - | chr6_3:48245640-48245659 | Msa0953000:CDS | 60.0% |
| !! | ACGCTTGGTGGACTGTGGAC+TGG | - | chr6_3:48245574-48245593 | Msa0953000:CDS | 60.0% |
| !! | TGGTGGACTGTGGACTGGCA+TGG | - | chr6_3:48245579-48245598 | Msa0953000:CDS | 60.0% |
| TGGCTGAAGACGTGCTGAGC+TGG | + | chr6_3:48246432-48246451 | None:intergenic | 60.0% | |
| GCTCAGTGAGACGTCCTAGG+TGG | + | chr6_3:48246099-48246118 | None:intergenic | 60.0% | |
| TCGATTCCACGCGCCTGGTA+CGG | + | chr6_3:48246387-48246406 | None:intergenic | 60.0% | |
| CGCGTGGAATCGAGATGCGT+CGG | - | chr6_3:48246394-48246413 | Msa0953000:intron | 60.0% | |
| GTCGGTCATCCGTACTGAGC+TGG | - | chr6_3:48246412-48246431 | Msa0953000:intron | 60.0% | |
| TGGCTGAAGACGTGCTGAGC+TGG | - | chr6_3:48246432-48246451 | Msa0953000:intron | 60.0% | |
| AGAGACAAGGGCGAGAGGCA+AGG | + | chr6_3:48247863-48247882 | None:intergenic | 60.0% | |
| !! | GCTCGACGCTTGGTGGACTG+TGG | - | chr6_3:48245569-48245588 | Msa0953000:CDS | 65.0% |
| ACGTGCTGAGCTGGCCGTCT+TGG | + | chr6_3:48246441-48246460 | None:intergenic | 65.0% | |
| TGGCTGGAGTCGTGCTGAGC+TGG | + | chr6_3:48246532-48246551 | None:intergenic | 65.0% | |
| ! | GTTTTCTGTACGGCCGCGCG+TGG | + | chr6_3:48246344-48246363 | None:intergenic | 65.0% |
| ! | GTTTTCTGTACGGCCGCGCG+TGG | - | chr6_3:48246344-48246363 | Msa0953000:intron | 65.0% |
| ACTCATCCGTACCAGGCGCG+TGG | - | chr6_3:48246378-48246397 | Msa0953000:intron | 65.0% | |
| GCATCTCGATTCCACGCGCC+TGG | + | chr6_3:48246392-48246411 | None:intergenic | 65.0% | |
| TGGCTGGAGTCGTGCTGAGC+TGG | - | chr6_3:48246532-48246551 | Msa0953000:intron | 65.0% | |
| ACGTGCTGAGCTGGCCGTCT+TGG | - | chr6_3:48246441-48246460 | Msa0953000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 48245307 | 48249154 | 48245307 | ID=Msa0953000;Name=Msa0953000 |
| chr6_3 | mRNA | 48245307 | 48249154 | 48245307 | ID=Msa0953000-mRNA-1;Parent=Msa0953000;Name=Msa0953000-mRNA-1;_AED=0.65;_eAED=0.65;_QI=0|0|0|0.33|0|0.66|3|0|368 |
| chr6_3 | exon | 48249147 | 48249154 | 48249147 | ID=Msa0953000-mRNA-1:exon:10650;Parent=Msa0953000-mRNA-1 |
| chr6_3 | exon | 48247748 | 48247830 | 48247748 | ID=Msa0953000-mRNA-1:exon:10649;Parent=Msa0953000-mRNA-1 |
| chr6_3 | exon | 48245307 | 48246322 | 48245307 | ID=Msa0953000-mRNA-1:exon:10648;Parent=Msa0953000-mRNA-1 |
| chr6_3 | CDS | 48249147 | 48249154 | 48249147 | ID=Msa0953000-mRNA-1:cds;Parent=Msa0953000-mRNA-1 |
| chr6_3 | CDS | 48247748 | 48247830 | 48247748 | ID=Msa0953000-mRNA-1:cds;Parent=Msa0953000-mRNA-1 |
| chr6_3 | CDS | 48245307 | 48246322 | 48245307 | ID=Msa0953000-mRNA-1:cds;Parent=Msa0953000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
