AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0523940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523940 MtrunA17_Chr4g0004781 75.000 64 16 0 1 64 344 407 4.77e-26 103
Msa0523940 MtrunA17_Chr4g0004791 71.429 63 18 0 1 63 344 406 1.11e-23 97.4
Msa0523940 MtrunA17_Chr3g0081681 55.714 70 30 1 1 70 160 228 1.16e-19 84.0
Msa0523940 MtrunA17_Chr1g0172991 57.353 68 27 1 1 68 366 431 9.14e-18 80.9
Msa0523940 MtrunA17_Chr1g0195191 64.179 67 21 2 1 67 332 395 1.31e-17 80.1
Msa0523940 MtrunA17_Chr7g0248561 47.222 72 35 1 1 72 350 418 4.98e-15 72.8
Msa0523940 MtrunA17_Chr7g0248611 42.647 68 39 0 1 68 375 442 3.48e-13 67.8
Msa0523940 MtrunA17_Chr1g0174021 43.939 66 36 1 1 65 199 264 5.97e-12 63.2
Msa0523940 MtrunA17_Chr7g0248001 40.909 66 39 0 2 67 370 435 8.50e-12 63.5
Msa0523940 MtrunA17_Chr7g0247961 37.500 80 44 1 2 81 364 437 1.53e-11 62.8
Msa0523940 MtrunA17_Chr7g0248601 49.180 61 31 0 1 61 224 284 7.02e-11 60.5
Msa0523940 MtrunA17_Chr7g0248641 40.000 70 36 1 14 83 364 427 8.20e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTGTTCTGTGCAATTTC+AGG 0.150585 3_4:+77407989 Msa0523940:five_prime_UTR
TTTGAGAGAGATCGCGATTT+AGG 0.161451 3_4:-77407808 None:intergenic
GAGAGTGAGGGATGGAGTTT+AGG 0.184546 3_4:-77407884 None:intergenic
TATACCTTCAAGTTATTATA+AGG 0.251210 3_4:+77410736 Msa0523940:three_prime_UTR
AGAGTGAGGGATGGAGTTTA+GGG 0.276590 3_4:-77407883 None:intergenic
AGGAAGCAATTATCTATAAT+TGG 0.287974 3_4:+77408508 Msa0523940:CDS
ATATGCACTGCTTGGATTAT+AGG 0.290352 3_4:+77410178 Msa0523940:CDS
TGGTAGTGGGCATGCGTTAT+GGG 0.313102 3_4:+77410138 Msa0523940:CDS
TTGAGAGAGATCGCGATTTA+GGG 0.326219 3_4:-77407807 None:intergenic
TTATTATAAGGTTAACCTAT+TGG 0.340148 3_4:+77410748 Msa0523940:three_prime_UTR
TTGGTAGTGGGCATGCGTTA+TGG 0.344239 3_4:+77410137 Msa0523940:CDS
AGATAGTTATATGTTTCTAA+TGG 0.350766 3_4:+77410799 Msa0523940:three_prime_UTR
GTGGGCATGCGTTATGGGGC+TGG 0.368171 3_4:+77410143 Msa0523940:CDS
TTCTGGAACTGGCATGTGGC+AGG 0.372920 3_4:+77409190 Msa0523940:CDS
GAGTCTGCATTTAGTGTCTT+GGG 0.385421 3_4:+77409425 Msa0523940:CDS
TGAGTCTGCATTTAGTGTCT+TGG 0.394781 3_4:+77409424 Msa0523940:CDS
TGATGGTGATACACTGCTAT+TGG 0.395869 3_4:+77408470 Msa0523940:CDS
GACAGTTATGAAAATGTTGA+AGG 0.401363 3_4:+77409551 Msa0523940:CDS
GGCATGGAATTTATTGGTAG+TGG 0.417211 3_4:+77410124 Msa0523940:CDS
AGTATTATCAATCATCCAAT+AGG 0.418768 3_4:-77410763 None:intergenic
TTAGACAAATCAACAATTGT+TGG 0.426097 3_4:+77410631 Msa0523940:CDS
GTGCAACACATTTCTTTGAC+GGG 0.426110 3_4:-77409232 None:intergenic
CCATTGTTTATTTCAAATGA+TGG 0.439439 3_4:+77408453 Msa0523940:CDS
TAGCGAGCTTGTTTCTCTAC+TGG 0.440208 3_4:+77410088 Msa0523940:intron
CTGGAACTGGCATGTGGCAG+GGG 0.441810 3_4:+77409192 Msa0523940:CDS
ACTGAGAAGGAGAAAGCAAC+TGG 0.466476 3_4:-77407940 None:intergenic
CTAATAACTTCCTCGAGTCT+TGG 0.470165 3_4:-77410682 None:intergenic
CATAAAACTAGTATTGATGA+TGG 0.477382 3_4:+77408567 Msa0523940:CDS
TTAACCTTATAATAACTTGA+AGG 0.481855 3_4:-77410740 None:intergenic
GGTGCAACACATTTCTTTGA+CGG 0.486278 3_4:-77409233 None:intergenic
TCTGGAACTGGCATGTGGCA+GGG 0.496497 3_4:+77409191 Msa0523940:CDS
GATCATAGAGTTGAGCGAAC+AGG 0.498273 3_4:+77408534 Msa0523940:CDS
AGTATTGATGATGGAAATGC+AGG 0.522172 3_4:+77408576 Msa0523940:CDS
GCATGGAATTTATTGGTAGT+GGG 0.522746 3_4:+77410125 Msa0523940:CDS
TGCGTTATGGGGCTGGTGTG+AGG 0.523738 3_4:+77410150 Msa0523940:CDS
ATTGGTTGAGATATCCTGCC+GGG 0.529002 3_4:+77409258 Msa0523940:CDS
TATGGGGCTGGTGTGAGGCA+TGG 0.529105 3_4:+77410155 Msa0523940:CDS
ATAACTTCCTCGAGTCTTGG+CGG 0.530505 3_4:-77410679 None:intergenic
TTAGATCGATTGAACTGAGA+AGG 0.538981 3_4:-77407953 None:intergenic
TCAACAATTGTTGGTGTACG+TGG 0.543817 3_4:+77410640 Msa0523940:CDS
AGGCATGGATATGCACTGCT+TGG 0.562799 3_4:+77410170 Msa0523940:CDS
CATTGGTTGAGATATCCTGC+CGG 0.570982 3_4:+77409257 Msa0523940:CDS
AGCAATTATCTATAATTGGA+GGG 0.578866 3_4:+77408512 Msa0523940:CDS
AGAAATGTGTTGCACCGCAT+TGG 0.582395 3_4:+77409240 Msa0523940:CDS
GCGTATTATCACTAAAGTCA+CGG 0.596502 3_4:-77408407 None:intergenic
AAGCAATTATCTATAATTGG+AGG 0.599315 3_4:+77408511 Msa0523940:CDS
AGAAAGCAACTGGACTGAGA+AGG 0.601184 3_4:-77407930 None:intergenic
AATTGCTGTAAACACCCGGC+AGG 0.612562 3_4:-77409272 None:intergenic
CCATCATTTGAAATAAACAA+TGG 0.612646 3_4:-77408453 None:intergenic
ATTGGATTGTAGTCAAGAAG+AGG 0.614754 3_4:+77408488 Msa0523940:CDS
TTCAGCACCGCCAAGACTCG+AGG 0.615879 3_4:+77410672 Msa0523940:CDS
GGTAGTGGGCATGCGTTATG+GGG 0.619529 3_4:+77410139 Msa0523940:CDS
ATTTGTCTAAGAAATATCCA+AGG 0.624404 3_4:-77410618 None:intergenic
GTGTTTCTGGAACTGGCATG+TGG 0.636580 3_4:+77409186 Msa0523940:CDS
GAAATTGCACAGAACAGTGA+AGG 0.639054 3_4:-77407986 None:intergenic
GCAGGATATCTCAACCAATG+CGG 0.761727 3_4:-77409254 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTTTTTTTAATGAAAT+GGG + chr3_4:77408307-77408326 Msa0523940:intron 10.0%
!! TTGTTCAAAAAAAAAAATTA+AGG - chr3_4:77408990-77409009 None:intergenic 10.0%
!! AAGTTCATATAATTAAATTA+AGG - chr3_4:77409021-77409040 None:intergenic 10.0%
!!! TTTTGTTTAAAAAATACTAA+AGG - chr3_4:77409084-77409103 None:intergenic 10.0%
!!! ATTTTTTGATTTTGATGAAA+TGG + chr3_4:77408098-77408117 Msa0523940:intron 15.0%
!!! TTTTTTGATTTTGATGAAAT+GGG + chr3_4:77408099-77408118 Msa0523940:intron 15.0%
!!! TTTGTTGAAATTTTGATATT+TGG + chr3_4:77408122-77408141 Msa0523940:intron 15.0%
!!! GTATGTTTTTTTTAATGAAA+TGG + chr3_4:77408306-77408325 Msa0523940:intron 15.0%
!! TATAATTTATAACCAATACT+AGG + chr3_4:77408920-77408939 Msa0523940:intron 15.0%
!! ATTATGTTATCATATCAATT+AGG + chr3_4:77409152-77409171 Msa0523940:intron 15.0%
!!! ATCAATTTTGTTTGAAATTA+TGG + chr3_4:77409709-77409728 Msa0523940:intron 15.0%
!! CATAAAAATTGTTTAGTTAA+TGG - chr3_4:77410397-77410416 None:intergenic 15.0%
!!! TTTGTTTTTTTTGTTACAGA+TGG - chr3_4:77407779-77407798 None:intergenic 20.0%
!! CTTTAATGAAAATTTGTGTA+TGG + chr3_4:77408207-77408226 Msa0523940:intron 20.0%
!!! GTTTGTTGAAATTATGAAAT+GGG + chr3_4:77408229-77408248 Msa0523940:intron 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG + chr3_4:77408369-77408388 Msa0523940:intron 20.0%
!! AAATTCAAACAAGTAAATCA+AGG - chr3_4:77408682-77408701 None:intergenic 20.0%
!!! GTTTTTAAATGACTAACTAT+TGG + chr3_4:77408781-77408800 Msa0523940:intron 20.0%
!!! TTTTTTTTTGAACAACTTAC+TGG + chr3_4:77408995-77409014 Msa0523940:intron 20.0%
!! AAAATAAACAATTCCCTTTA+AGG - chr3_4:77409056-77409075 None:intergenic 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG + chr3_4:77408369-77408388 Msa0523940:intron 20.0%
!!! TTCTTTGTTAACAATTTTGA+TGG + chr3_4:77409599-77409618 Msa0523940:intron 20.0%
!!! TCTTTGTTAACAATTTTGAT+GGG + chr3_4:77409600-77409619 Msa0523940:intron 20.0%
!! CAGAAGATATAATATTAACA+AGG - chr3_4:77409744-77409763 None:intergenic 20.0%
!!! TTGTAGACTTAATTGTTTTT+TGG + chr3_4:77409904-77409923 Msa0523940:intron 20.0%
!!! TGTAGACTTAATTGTTTTTT+GGG + chr3_4:77409905-77409924 Msa0523940:intron 20.0%
!!! TAGATTTCTAAAGAATGTAA+AGG - chr3_4:77410492-77410511 None:intergenic 20.0%
!!! AATTTTCTGATGTATAATGA+GGG + chr3_4:77410518-77410537 Msa0523940:intron 20.0%
!!! TATACCTTCAAGTTATTATA+AGG + chr3_4:77410736-77410755 Msa0523940:three_prime_UTR 20.0%
!! TTAACCTTATAATAACTTGA+AGG - chr3_4:77410743-77410762 None:intergenic 20.0%
!! TTATTATAAGGTTAACCTAT+TGG + chr3_4:77410748-77410767 Msa0523940:three_prime_UTR 20.0%
!!! AGATAGTTATATGTTTCTAA+TGG + chr3_4:77410799-77410818 Msa0523940:three_prime_UTR 20.0%
! AAAGAATATCACCTATATTG+AGG - chr3_4:77408046-77408065 None:intergenic 25.0%
!! GACTCAAATTTTCATTAAAG+AGG - chr3_4:77408284-77408303 None:intergenic 25.0%
! CTTTAATGAAAATTTGAGTC+TGG + chr3_4:77408284-77408303 Msa0523940:intron 25.0%
!!! GGTTTGTTGAAATTATGAAA+TGG + chr3_4:77408228-77408247 Msa0523940:intron 25.0%
!! CCATCATTTGAAATAAACAA+TGG - chr3_4:77408456-77408475 None:intergenic 25.0%
! CCATTGTTTATTTCAAATGA+TGG + chr3_4:77408453-77408472 Msa0523940:CDS 25.0%
! AGGAAGCAATTATCTATAAT+TGG + chr3_4:77408508-77408527 Msa0523940:CDS 25.0%
! AAGCAATTATCTATAATTGG+AGG + chr3_4:77408511-77408530 Msa0523940:CDS 25.0%
! AGCAATTATCTATAATTGGA+GGG + chr3_4:77408512-77408531 Msa0523940:CDS 25.0%
!!! CATAAAACTAGTATTGATGA+TGG + chr3_4:77408567-77408586 Msa0523940:CDS 25.0%
! TTTATAACCAATACTAGGTT+TGG + chr3_4:77408925-77408944 Msa0523940:intron 25.0%
! AGTAAGTAAATGCATTCAAA+AGG - chr3_4:77409490-77409509 None:intergenic 25.0%
!! ATTGAAGATTGTTATTAGTG+TGG + chr3_4:77409931-77409950 Msa0523940:intron 25.0%
!! TTGAAGATTGTTATTAGTGT+GGG + chr3_4:77409932-77409951 Msa0523940:intron 25.0%
! TAGTTTAGATGAAAGTTTGA+TGG + chr3_4:77409977-77409996 Msa0523940:intron 25.0%
! AGTTTAGATGAAAGTTTGAT+GGG + chr3_4:77409978-77409997 Msa0523940:intron 25.0%
! TGATGCTAACATATACAAAA+AGG - chr3_4:77410248-77410267 None:intergenic 25.0%
! AGAAGTTAATGACCAAATTA+AGG + chr3_4:77410337-77410356 Msa0523940:intron 25.0%
! GAAGTTAATGACCAAATTAA+GGG + chr3_4:77410338-77410357 Msa0523940:intron 25.0%
! TAAAGTTGTTACCCTTAATT+TGG - chr3_4:77410352-77410371 None:intergenic 25.0%
! TGAATGATGGTTTAAAAGAA+TGG + chr3_4:77410442-77410461 Msa0523940:intron 25.0%
!! TTTCTAAAGAATGTAAAGGA+GGG - chr3_4:77410488-77410507 None:intergenic 25.0%
!! ATTTCTAAAGAATGTAAAGG+AGG - chr3_4:77410489-77410508 None:intergenic 25.0%
!! GAATTTTCTGATGTATAATG+AGG + chr3_4:77410517-77410536 Msa0523940:intron 25.0%
! TGATTCTGTACAAAAATACA+AGG - chr3_4:77410596-77410615 None:intergenic 25.0%
! ATTTGTCTAAGAAATATCCA+AGG - chr3_4:77410621-77410640 None:intergenic 25.0%
! TTAGACAAATCAACAATTGT+TGG + chr3_4:77410631-77410650 Msa0523940:CDS 25.0%
! AGTATTATCAATCATCCAAT+AGG - chr3_4:77410766-77410785 None:intergenic 25.0%
! GTTTGTTGAAAATTTGAGTC+TGG + chr3_4:77408152-77408171 Msa0523940:intron 30.0%
!!! TTTTGACTTCTGCTGAAATT+AGG + chr3_4:77408179-77408198 Msa0523940:intron 30.0%
GAAATGCAGGTTATTTATGT+TGG + chr3_4:77408589-77408608 Msa0523940:intron 30.0%
!! TCGATTTGTTGAAACTTGAA+TGG + chr3_4:77408645-77408664 Msa0523940:intron 30.0%
TAATGATTCGACAATTCTCA+TGG + chr3_4:77408811-77408830 Msa0523940:intron 30.0%
AAAAAATTAAGGCCAGTAAG+AGG - chr3_4:77408979-77408998 None:intergenic 30.0%
TTGAACTTGATTCTCCTTAA+AGG + chr3_4:77409039-77409058 Msa0523940:intron 30.0%
TGAACTTGATTCTCCTTAAA+GGG + chr3_4:77409040-77409059 Msa0523940:intron 30.0%
TGTAAAACAGTCCTTGATTT+GGG + chr3_4:77409110-77409129 Msa0523940:intron 30.0%
!! GGAGAATATTTTTGTGTTTC+TGG + chr3_4:77409173-77409192 Msa0523940:intron 30.0%
!!! TATTTTTGTGTTTCTGGAAC+TGG + chr3_4:77409179-77409198 Msa0523940:CDS 30.0%
GACAGTTATGAAAATGTTGA+AGG + chr3_4:77409551-77409570 Msa0523940:CDS 30.0%
!!! TTTTTAGGTTAGTTCCTATG+TGG - chr3_4:77409663-77409682 None:intergenic 30.0%
GGAACTAACCTAAAAAATTC+CGG + chr3_4:77409667-77409686 Msa0523940:intron 30.0%
GAACTAACCTAAAAAATTCC+GGG + chr3_4:77409668-77409687 Msa0523940:intron 30.0%
AACTAACCTAAAAAATTCCG+GGG + chr3_4:77409669-77409688 Msa0523940:intron 30.0%
TGTCTGTTCAATTAGCAAAT+GGG - chr3_4:77409768-77409787 None:intergenic 30.0%
! CAGTTACGACATATTTGTTA+TGG - chr3_4:77409791-77409810 None:intergenic 30.0%
TTCATCTAAACTATGAAGCA+GGG - chr3_4:77409970-77409989 None:intergenic 30.0%
TTTCATCTAAACTATGAAGC+AGG - chr3_4:77409971-77409990 None:intergenic 30.0%
! AGTTGGTTTCAATGTAACAA+AGG - chr3_4:77410026-77410045 None:intergenic 30.0%
TAGCAACCAAGAATAACAAT+AGG - chr3_4:77410061-77410080 None:intergenic 30.0%
!! TTTTTGGGCATGGAATTTAT+TGG + chr3_4:77410118-77410137 Msa0523940:CDS 30.0%
! ATCATATCTAGTTGTCCTTT+TGG + chr3_4:77410264-77410283 Msa0523940:intron 30.0%
! AAGCTCTTTATCATCTCTTT+TGG + chr3_4:77410543-77410562 Msa0523940:intron 30.0%
! AGCTCTTTATCATCTCTTTT+GGG + chr3_4:77410544-77410563 Msa0523940:intron 30.0%
! TTTTGTACAGAATCAAACCT+TGG + chr3_4:77410601-77410620 Msa0523940:intron 30.0%
TTAGATCGATTGAACTGAGA+AGG - chr3_4:77407956-77407975 None:intergenic 35.0%
TCAGTTTCGTTCCTCAATAT+AGG + chr3_4:77408032-77408051 Msa0523940:intron 35.0%
GCGTATTATCACTAAAGTCA+CGG - chr3_4:77408410-77408429 None:intergenic 35.0%
ATTGGATTGTAGTCAAGAAG+AGG + chr3_4:77408488-77408507 Msa0523940:CDS 35.0%
!! AGTATTGATGATGGAAATGC+AGG + chr3_4:77408576-77408595 Msa0523940:CDS 35.0%
TAAGCTTTCAACAAAACCCT+TGG - chr3_4:77408622-77408641 None:intergenic 35.0%
TCAACCAAAAAAGCAGTCAT+AGG - chr3_4:77408757-77408776 None:intergenic 35.0%
AAAATCGCCAAACCTAGTAT+TGG - chr3_4:77408935-77408954 None:intergenic 35.0%
GTGTAAAACAGTCCTTGATT+TGG + chr3_4:77409109-77409128 Msa0523940:intron 35.0%
! GTAAAACAGTCCTTGATTTG+GGG + chr3_4:77409111-77409130 Msa0523940:intron 35.0%
!! TAAAACAGTCCTTGATTTGG+GGG + chr3_4:77409112-77409131 Msa0523940:intron 35.0%
!! CAGGTTTGTTTTCTATGTTC+AGG + chr3_4:77409372-77409391 Msa0523940:intron 35.0%
TACTGAGTTTGTGAATTTGC+AGG + chr3_4:77409506-77409525 Msa0523940:intron 35.0%
!!! GATTTACCCCGGAATTTTTT+AGG - chr3_4:77409678-77409697 None:intergenic 35.0%
AACAGAAACTAGATTTACCC+CGG - chr3_4:77409689-77409708 None:intergenic 35.0%
GTGTCTGTTCAATTAGCAAA+TGG - chr3_4:77409769-77409788 None:intergenic 35.0%
! TGAGTGCCTATTGTTATTCT+TGG + chr3_4:77410052-77410071 Msa0523940:intron 35.0%
!!! TCTACTGGTAGCTACTTTTT+GGG + chr3_4:77410103-77410122 Msa0523940:CDS 35.0%
! GCATGGAATTTATTGGTAGT+GGG + chr3_4:77410125-77410144 Msa0523940:CDS 35.0%
ATATGCACTGCTTGGATTAT+AGG + chr3_4:77410178-77410197 Msa0523940:CDS 35.0%
TATAGGTCATCACAGTAACA+TGG + chr3_4:77410195-77410214 Msa0523940:intron 35.0%
! AAAGCATCTGCATTGAATGA+TGG + chr3_4:77410429-77410448 Msa0523940:intron 35.0%
! GCTCTTTATCATCTCTTTTG+GGG + chr3_4:77410545-77410564 Msa0523940:intron 35.0%
TTGAGAGAGATCGCGATTTA+GGG - chr3_4:77407810-77407829 None:intergenic 40.0%
TTTGAGAGAGATCGCGATTT+AGG - chr3_4:77407811-77407830 None:intergenic 40.0%
GAAATTGCACAGAACAGTGA+AGG - chr3_4:77407989-77408008 None:intergenic 40.0%
TCACTGTTCTGTGCAATTTC+AGG + chr3_4:77407989-77408008 Msa0523940:five_prime_UTR 40.0%
GGAACGAAACTGAGAAAGAA+AGG - chr3_4:77408025-77408044 None:intergenic 40.0%
! TGATGGTGATACACTGCTAT+TGG + chr3_4:77408470-77408489 Msa0523940:CDS 40.0%
TTTATGTTGGAGCTTTGCCA+AGG + chr3_4:77408602-77408621 Msa0523940:intron 40.0%
TTATGTTGGAGCTTTGCCAA+GGG + chr3_4:77408603-77408622 Msa0523940:intron 40.0%
!!! CGTTCCTATGACTGCTTTTT+TGG + chr3_4:77408750-77408769 Msa0523940:intron 40.0%
!! AAAACAGTCCTTGATTTGGG+GGG + chr3_4:77409113-77409132 Msa0523940:intron 40.0%
GTGCAACACATTTCTTTGAC+GGG - chr3_4:77409235-77409254 None:intergenic 40.0%
GGTGCAACACATTTCTTTGA+CGG - chr3_4:77409236-77409255 None:intergenic 40.0%
AACGAATTGCTGTAAACACC+CGG - chr3_4:77409279-77409298 None:intergenic 40.0%
TGAGTCTGCATTTAGTGTCT+TGG + chr3_4:77409424-77409443 Msa0523940:CDS 40.0%
GAGTCTGCATTTAGTGTCTT+GGG + chr3_4:77409425-77409444 Msa0523940:CDS 40.0%
!! GGTTTTATCGCTCTTCAAGA+CGG + chr3_4:77409621-77409640 Msa0523940:intron 40.0%
! AAGACGAGGATTTTCCACAT+AGG + chr3_4:77409646-77409665 Msa0523940:intron 40.0%
TAACTGCCTGTCATGCTTTA+AGG + chr3_4:77409805-77409824 Msa0523940:intron 40.0%
GTTCTTCCTTAAAGCATGAC+AGG - chr3_4:77409814-77409833 None:intergenic 40.0%
AACACATGAGCAATTACCAG+CGG - chr3_4:77409849-77409868 None:intergenic 40.0%
! TAGATGAAAGTTTGATGGGC+TGG + chr3_4:77409982-77410001 Msa0523940:intron 40.0%
!!! CTCTACTGGTAGCTACTTTT+TGG + chr3_4:77410102-77410121 Msa0523940:CDS 40.0%
GGCATGGAATTTATTGGTAG+TGG + chr3_4:77410124-77410143 Msa0523940:CDS 40.0%
GCAGATGCTTTCACGATTAA+TGG - chr3_4:77410420-77410439 None:intergenic 40.0%
TCAACAATTGTTGGTGTACG+TGG + chr3_4:77410640-77410659 Msa0523940:CDS 40.0%
CTAATAACTTCCTCGAGTCT+TGG - chr3_4:77410685-77410704 None:intergenic 40.0%
AGAGTGAGGGATGGAGTTTA+GGG - chr3_4:77407886-77407905 None:intergenic 45.0%
AGAAAGCAACTGGACTGAGA+AGG - chr3_4:77407933-77407952 None:intergenic 45.0%
ACTGAGAAGGAGAAAGCAAC+TGG - chr3_4:77407943-77407962 None:intergenic 45.0%
GATCATAGAGTTGAGCGAAC+AGG + chr3_4:77408534-77408553 Msa0523940:CDS 45.0%
AATTAAGGCCAGTAAGAGGC+AGG - chr3_4:77408975-77408994 None:intergenic 45.0%
TGTATTGTCCCCCCAAATCA+AGG - chr3_4:77409124-77409143 None:intergenic 45.0%
AGAAATGTGTTGCACCGCAT+TGG + chr3_4:77409240-77409259 Msa0523940:CDS 45.0%
GCAGGATATCTCAACCAATG+CGG - chr3_4:77409257-77409276 None:intergenic 45.0%
! CATTGGTTGAGATATCCTGC+CGG + chr3_4:77409257-77409276 Msa0523940:CDS 45.0%
ATTGGTTGAGATATCCTGCC+GGG + chr3_4:77409258-77409277 Msa0523940:CDS 45.0%
ATAGGCACTCACACACTAGT+TGG - chr3_4:77410043-77410062 None:intergenic 45.0%
! TAGCGAGCTTGTTTCTCTAC+TGG + chr3_4:77410088-77410107 Msa0523940:intron 45.0%
!!! TGGTAGCTACTTTTTGGGCA+TGG + chr3_4:77410108-77410127 Msa0523940:CDS 45.0%
!! CTAGTTGTCCTTTTGGTGAC+AGG + chr3_4:77410271-77410290 Msa0523940:intron 45.0%
ACAGGAGCTGAAGTAGAGAA+AGG + chr3_4:77410289-77410308 Msa0523940:intron 45.0%
ATAACTTCCTCGAGTCTTGG+CGG - chr3_4:77410682-77410701 None:intergenic 45.0%
GAGAGTGAGGGATGGAGTTT+AGG - chr3_4:77407887-77407906 None:intergenic 50.0%
GAACGAGAGAGAGAGAGTGA+GGG - chr3_4:77407899-77407918 None:intergenic 50.0%
TGAACGAGAGAGAGAGAGTG+AGG - chr3_4:77407900-77407919 None:intergenic 50.0%
ACAAACAGCCTGCCTCTTAC+TGG + chr3_4:77408964-77408983 Msa0523940:intron 50.0%
!! GTGTTTCTGGAACTGGCATG+TGG + chr3_4:77409186-77409205 Msa0523940:CDS 50.0%
AATTGCTGTAAACACCCGGC+AGG - chr3_4:77409275-77409294 None:intergenic 50.0%
TCTTCAAGACGGAGAAGACG+AGG + chr3_4:77409632-77409651 Msa0523940:intron 50.0%
!! TTGGTAGTGGGCATGCGTTA+TGG + chr3_4:77410137-77410156 Msa0523940:CDS 50.0%
!! TGGTAGTGGGCATGCGTTAT+GGG + chr3_4:77410138-77410157 Msa0523940:CDS 50.0%
AGGCATGGATATGCACTGCT+TGG + chr3_4:77410170-77410189 Msa0523940:CDS 50.0%
CTTCAGCTCCTGTCACCAAA+AGG - chr3_4:77410282-77410301 None:intergenic 50.0%
GAGAGAGAGAGAGTGAGGGA+TGG - chr3_4:77407895-77407914 None:intergenic 55.0%
!! TTCTGGAACTGGCATGTGGC+AGG + chr3_4:77409190-77409209 Msa0523940:CDS 55.0%
! TCTGGAACTGGCATGTGGCA+GGG + chr3_4:77409191-77409210 Msa0523940:CDS 55.0%
GAACTATCCTCATGCTCCGC+TGG + chr3_4:77409830-77409849 Msa0523940:intron 55.0%
GCAATTACCAGCGGAGCATG+AGG - chr3_4:77409840-77409859 None:intergenic 55.0%
!! GGTAGTGGGCATGCGTTATG+GGG + chr3_4:77410139-77410158 Msa0523940:CDS 55.0%
CTGGAACTGGCATGTGGCAG+GGG + chr3_4:77409192-77409211 Msa0523940:CDS 60.0%
! TGCGTTATGGGGCTGGTGTG+AGG + chr3_4:77410150-77410169 Msa0523940:CDS 60.0%
! TATGGGGCTGGTGTGAGGCA+TGG + chr3_4:77410155-77410174 Msa0523940:CDS 60.0%
TTCAGCACCGCCAAGACTCG+AGG + chr3_4:77410672-77410691 Msa0523940:CDS 60.0%
GTGGGCATGCGTTATGGGGC+TGG + chr3_4:77410143-77410162 Msa0523940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77407772 77410938 77407772 ID=Msa0523940;Name=Msa0523940
chr3_4 mRNA 77407772 77410938 77407772 ID=Msa0523940-mRNA-1;Parent=Msa0523940;Name=Msa0523940-mRNA-1;_AED=0.32;_eAED=0.32;_QI=250|0.16|0.57|1|0.83|0.71|7|227|211
chr3_4 exon 77407772 77408010 77407772 ID=Msa0523940-mRNA-1:exon:22691;Parent=Msa0523940-mRNA-1
chr3_4 exon 77408391 77408597 77408391 ID=Msa0523940-mRNA-1:exon:22692;Parent=Msa0523940-mRNA-1
chr3_4 exon 77409174 77409279 77409174 ID=Msa0523940-mRNA-1:exon:22693;Parent=Msa0523940-mRNA-1
chr3_4 exon 77409394 77409454 77409394 ID=Msa0523940-mRNA-1:exon:22694;Parent=Msa0523940-mRNA-1
chr3_4 exon 77409528 77409590 77409528 ID=Msa0523940-mRNA-1:exon:22695;Parent=Msa0523940-mRNA-1
chr3_4 exon 77410091 77410199 77410091 ID=Msa0523940-mRNA-1:exon:22696;Parent=Msa0523940-mRNA-1
chr3_4 exon 77410611 77410938 77410611 ID=Msa0523940-mRNA-1:exon:22697;Parent=Msa0523940-mRNA-1
chr3_4 five_prime_UTR 77407772 77408010 77407772 ID=Msa0523940-mRNA-1:five_prime_utr;Parent=Msa0523940-mRNA-1
chr3_4 five_prime_UTR 77408391 77408401 77408391 ID=Msa0523940-mRNA-1:five_prime_utr;Parent=Msa0523940-mRNA-1
chr3_4 CDS 77408402 77408597 77408402 ID=Msa0523940-mRNA-1:cds;Parent=Msa0523940-mRNA-1
chr3_4 CDS 77409174 77409279 77409174 ID=Msa0523940-mRNA-1:cds;Parent=Msa0523940-mRNA-1
chr3_4 CDS 77409394 77409454 77409394 ID=Msa0523940-mRNA-1:cds;Parent=Msa0523940-mRNA-1
chr3_4 CDS 77409528 77409590 77409528 ID=Msa0523940-mRNA-1:cds;Parent=Msa0523940-mRNA-1
chr3_4 CDS 77410091 77410199 77410091 ID=Msa0523940-mRNA-1:cds;Parent=Msa0523940-mRNA-1
chr3_4 CDS 77410611 77410711 77410611 ID=Msa0523940-mRNA-1:cds;Parent=Msa0523940-mRNA-1
chr3_4 three_prime_UTR 77410712 77410938 77410712 ID=Msa0523940-mRNA-1:three_prime_utr;Parent=Msa0523940-mRNA-1
Gene Sequence

>Msa0523940

ATGAACCGTGACTTTAGTGATAATACGCTGAAGTATGATCTTCAATTCTTGCCATTGTTTATTTCAAATGATGGTGATACACTGCTATTGGATTGTAGTCAAGAAGAGGAAGCAATTATCTATAATTGGAGGGATCATAGAGTTGAGCGAACAGGAGTTAGCGTGCATAAAACTAGTATTGATGATGGAAATGCAGGAGAATATTTTTGTGTTTCTGGAACTGGCATGTGGCAGGGGAGTAAGAATTTTGATGTCCCGTCAAAGAAATGTGTTGCACCGCATTGGTTGAGATATCCTGCCGGGTTTCTTTTCTTTGTTGAAATTATGAAATTTGAGTCTGCATTTAGTGTCTTGGGTATTTTAGAGTTAACGTTTAATGCGTCTTTGACAGTTATGAAAATGTTGAAGGATTTAGAGAGAACTGAACGAGCTTGTTTCTCTACTGGTAGCTACTTTTTGGGCATGGAATTTATTGGTAGTGGGCATGCGTTATGGGGCTGGTGTGAGGCATGGATATGCACTGCTTGGATTATAGAATCAAACCTTGGATATTTCTTAGACAAATCAACAATTGTTGGTGTACGTGGTTTTTGTGTTTCAGCACCGCCAAGACTCGAGGAAGTTATTAGAACTTAA

Protein sequence

>Msa0523940

MNRDFSDNTLKYDLQFLPLFISNDGDTLLLDCSQEEEAIIYNWRDHRVERTGVSVHKTSIDDGNAGEYFCVSGTGMWQGSKNFDVPSKKCVAPHWLRYPAGFLFFVEIMKFESAFSVLGILELTFNASLTVMKMLKDLERTERACFSTGSYFLGMEFIGSGHALWGWCEAWICTAWIIESNLGYFLDKSTIVGVRGFCVSAPPRLEEVIRT*