AlfalfaGEDB | Msa0955340

M. sativa cultivar zhongmu-4 / Msa0955340

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955340	sp\|Q6R0C4\|MYB52_ARATH	55.556	243	95	6	1	232	2	242	2.60e-79	241

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955340	G7KJN3	97.863	234	4	1	1	233	1	234	4.82e-170	477

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TFs/TRs:

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Gene ID	Type	Classification
Msa0955340	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0896180	Msa0955340	0.828184	1.035146e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955340	MtrunA17_Chr6g0480581	97.863	234	4	1	1	233	1	234	9.28e-174	477
Msa0955340	MtrunA17_Chr3g0125801	59.551	178	65	5	2	177	14	186	3.65e-61	193
Msa0955340	MtrunA17_Chr5g0417621	66.917	133	43	1	2	134	132	263	3.48e-59	192
Msa0955340	MtrunA17_Chr4g0042501	52.874	174	74	2	1	167	102	274	3.67e-59	192
Msa0955340	MtrunA17_Chr7g0254261	73.214	112	30	0	1	112	86	197	1.25e-56	184
Msa0955340	MtrunA17_Chr6g0460671	70.192	104	31	0	4	107	99	202	7.62e-51	169
Msa0955340	MtrunA17_Chr6g0460661	57.143	112	48	0	3	114	15	126	8.48e-45	147
Msa0955340	MtrunA17_Chr4g0008551	57.000	100	43	0	4	103	38	137	8.53e-39	137
Msa0955340	MtrunA17_Chr6g0454921	54.082	98	45	0	4	101	15	112	1.08e-35	125
Msa0955340	MtrunA17_Chr5g0401731	54.000	100	46	0	4	103	15	114	2.60e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955340	AT1G17950.1	55.556	243	95	6	1	232	2	242	2.65e-80	241
Msa0955340	AT1G73410.1	50.000	254	91	5	1	233	3	241	9.80e-71	216
Msa0955340	AT4G33450.1	46.186	236	116	5	2	231	17	247	7.59e-62	194
Msa0955340	AT1G73410.2	82.727	110	19	0	1	110	3	112	1.19e-61	192
Msa0955340	AT1G69560.1	65.942	138	44	2	3	137	106	243	1.38e-58	188
Msa0955340	AT1G69560.2	65.942	138	44	2	3	137	122	259	1.40e-58	189
Msa0955340	AT1G26780.1	68.254	126	34	1	1	120	95	220	4.79e-57	183
Msa0955340	AT1G26780.2	68.254	126	34	1	1	120	95	220	2.01e-56	184
Msa0955340	AT5G17800.1	72.897	107	29	0	1	107	90	196	4.21e-55	179
Msa0955340	AT3G29020.1	65.789	114	39	0	1	114	62	175	1.44e-53	172

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Find 74 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGTGATGATCAAG+AGG	0.537064	6_3:-59359514	None:intergenic
AAACAGAAATCCATTCACGG+AGG	0.757168	6_3:+59359330	Msa0955340:CDS
AAACTATAGGTGAAGAGGAT+AGG	0.470701	6_3:+59357196	Msa0955340:five_prime_UTR
AAAGAGCTATGAGAGACACG+AGG	0.719727	6_3:-59359619	None:intergenic
AAAGCTATGGACCTCATAAT+TGG	0.364887	6_3:+59357377	Msa0955340:CDS
AAAGGGATATATATAAGAAA+AGG	0.512562	6_3:-59357091	None:intergenic
AACATTGTGGAACAAGAGTT+TGG	0.324759	6_3:-59359670	None:intergenic
AAGAAAAGTGGAAGATGAAA+AGG	0.387802	6_3:-59357109	None:intergenic
AAGAGCTATGAGAGACACGA+GGG	0.698198	6_3:-59359618	None:intergenic
AAGTTTGTTTGATGATCATT+TGG	0.397165	6_3:-59359541	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAATTGAAGACAAGAAG+TGG	-	chr6_3:59357055-59357074	None:intergenic	30.0%
AGAAAAGTGGAAGATGAAAA+GGG	-	chr6_3:59357111-59357130	None:intergenic	30.0%
AAGAAAAGTGGAAGATGAAA+AGG	-	chr6_3:59357112-59357131	None:intergenic	30.0%
TGATCTATATGATCAACTCA+AGG	-	chr6_3:59357162-59357181	None:intergenic	30.0%
ATCATATAGATCAAAGCAAG+AGG	+	chr6_3:59357169-59357188	Msa0955340:five_prime_UTR	30.0%
TCATATAGATCAAAGCAAGA+GGG	+	chr6_3:59357170-59357189	Msa0955340:five_prime_UTR	30.0%
TTTCTTGTATACATACTCGA+TGG	-	chr6_3:59357521-59357540	None:intergenic	30.0%
ATGATAGCATACTTAACTCT+TGG	+	chr6_3:59357541-59357560	Msa0955340:intron	30.0%
TGATAGCATACTTAACTCTT+GGG	+	chr6_3:59357542-59357561	Msa0955340:intron	30.0%
AACCTAATAAAGCAAATGAG+CGG	-	chr6_3:59357892-59357911	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	59357002	59361864	59357002	ID=Msa0955340;Name=Msa0955340
chr6_3	mRNA	59357002	59361864	59357002	ID=Msa0955340-mRNA-1;Parent=Msa0955340;Name=Msa0955340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=317\|1\|1\|1\|1\|1\|3\|212\|233
chr6_3	exon	59357002	59357433	59357002	ID=Msa0955340-mRNA-1:exon:11693;Parent=Msa0955340-mRNA-1
chr6_3	exon	59359284	59359697	59359284	ID=Msa0955340-mRNA-1:exon:11694;Parent=Msa0955340-mRNA-1
chr6_3	exon	59361480	59361864	59361480	ID=Msa0955340-mRNA-1:exon:11695;Parent=Msa0955340-mRNA-1
chr6_3	five_prime_UTR	59357002	59357318	59357002	ID=Msa0955340-mRNA-1:five_prime_utr;Parent=Msa0955340-mRNA-1
chr6_3	CDS	59357319	59357433	59357319	ID=Msa0955340-mRNA-1:cds;Parent=Msa0955340-mRNA-1
chr6_3	CDS	59359284	59359697	59359284	ID=Msa0955340-mRNA-1:cds;Parent=Msa0955340-mRNA-1
chr6_3	CDS	59361480	59361652	59361480	ID=Msa0955340-mRNA-1:cds;Parent=Msa0955340-mRNA-1
chr6_3	three_prime_UTR	59361653	59361864	59361653	ID=Msa0955340-mRNA-1:three_prime_utr;Parent=Msa0955340-mRNA-1

Gene Sequence

>Msa0955340

ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGAGAAGCTTAGGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTCCGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGATCCAAGAATAAACAGAAATCCATTCACGGAGGAAGAAGAAGAGCGTCTTATAACTTCTCATCGAATTCATGGTAATAGATGGGCGGTCATTGCAAGACACTTCCCCGGACGGACTGATAATGCTGTAAAGAATCATTGGCATGTGATGATGGCGAGGATTCGTCGAGAAAGGTATAAGATCTATGCAAAAGGTCCTCTTGATCATCACACAATTTTCTCTCCAAATGATCATCAAACAAACTTTGAGAGAACAAATCTCCACTCTTTTGTTGAGAAGTATCATGAAAAGCATAATCACCCTCGTGTCTCTCATAGCTCTTTCCAATTTCCTAAGTTTCACTTTCATGGTCCAAACTCTTGTTCCACAATGTTTCAAGATAAAAGTCAATCAATTGAGTTCTATGATTTTCTTCAAGTAGATTCCAATAAAAGTGAAGTAACTGATAATGCTAGAAGAGATGATGAGGAAGTCAATCAAGATGTTATGGCACTGAAGAACAAGGAAAACAATGTTCAATTCATTGATTTTTTGTCTACCGGAAATTGCTAA

Protein sequence

>Msa0955340

MCSRGHWRPSEDEKLRELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKIYAKGPLDHHTIFSPNDHQTNFERTNLHSFVEKYHEKHNHPRVSHSSFQFPKFHFHGPNSCSTMFQDKSQSIEFYDFLQVDSNKSEVTDNARRDDEEVNQDVMALKNKENNVQFIDFLSTGNC*