AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896180 MtrunA17_Chr6g0480581 98.340 241 3 1 1 240 1 241 3.39e-180 493
Msa0896180 MtrunA17_Chr3g0125801 60.112 178 64 5 2 177 14 186 1.92e-61 194
Msa0896180 MtrunA17_Chr5g0417621 66.917 133 43 1 2 134 132 263 4.54e-59 192
Msa0896180 MtrunA17_Chr4g0042501 74.107 112 29 0 1 112 102 213 6.81e-59 192
Msa0896180 MtrunA17_Chr7g0254261 73.214 112 30 0 1 112 86 197 1.37e-56 184
Msa0896180 MtrunA17_Chr6g0460671 70.192 104 31 0 4 107 99 202 9.03e-51 169
Msa0896180 MtrunA17_Chr6g0460661 57.143 112 48 0 3 114 15 126 1.21e-44 147
Msa0896180 MtrunA17_Chr4g0008551 57.000 100 43 0 4 103 38 137 9.13e-39 137
Msa0896180 MtrunA17_Chr6g0454921 54.082 98 45 0 4 101 15 112 1.32e-35 125
Msa0896180 MtrunA17_Chr5g0401731 54.000 100 46 0 4 103 15 114 3.70e-35 127
Msa0896180 MtrunA17_Chr3g0133601 54.000 100 46 0 4 103 37 136 7.95e-34 121
Msa0896180 MtrunA17_Chr4g0053431 53.000 100 47 0 4 103 5 104 9.12e-34 122
Msa0896180 MtrunA17_Chr5g0437321 52.041 98 47 0 4 101 19 116 2.73e-33 121
Msa0896180 MtrunA17_Chr7g0238631 53.000 100 47 0 4 103 113 212 7.05e-32 122
Msa0896180 MtrunA17_Chr3g0139671 47.368 114 57 1 4 117 85 195 3.96e-31 120
Msa0896180 MtrunA17_Chr1g0157731 46.491 114 58 1 4 117 91 201 2.06e-30 119
Msa0896180 MtrunA17_Chr5g0429661 49.515 103 52 0 1 103 119 221 5.08e-29 112
Msa0896180 MtrunA17_Chr2g0309911 46.667 120 54 4 4 121 13 124 1.70e-27 107
Msa0896180 MtrunA17_Chr4g0022901 50.495 101 49 1 4 103 15 115 3.88e-27 105
Msa0896180 MtrunA17_Chr3g0117511 44.800 125 67 1 4 126 183 307 6.40e-27 107
Msa0896180 MtrunA17_Chr5g0435101 38.272 162 80 6 4 161 13 158 7.57e-27 103
Msa0896180 MtrunA17_Chr7g0228891 44.628 121 60 3 4 122 14 129 1.06e-26 103
Msa0896180 MtrunA17_Chr4g0058991 42.748 131 73 1 1 129 206 336 1.09e-26 107
Msa0896180 MtrunA17_Chr1g0203441 46.078 102 52 2 4 103 15 115 1.73e-26 103
Msa0896180 MtrunA17_Chr2g0323351 48.039 102 50 2 4 103 14 114 1.93e-26 102
Msa0896180 MtrunA17_Chr4g0022931 49.505 101 50 1 4 103 15 115 1.98e-26 103
Msa0896180 MtrunA17_Chr8g0342521 44.094 127 61 4 4 128 14 132 2.01e-26 104
Msa0896180 MtrunA17_Chr4g0055981 44.554 101 55 1 4 103 57 157 2.42e-26 102
Msa0896180 MtrunA17_Chr5g0397841 52.174 92 44 0 7 98 113 204 2.54e-26 106
Msa0896180 MtrunA17_Chr1g0187761 50.000 102 48 2 4 103 14 114 2.84e-26 102
Msa0896180 MtrunA17_Chr5g0397231 52.632 95 44 1 4 97 14 108 3.30e-26 103
Msa0896180 MtrunA17_Chr2g0311221 50.515 97 47 1 4 99 16 112 3.34e-26 103
Msa0896180 MtrunA17_Chr3g0115821 41.429 140 63 5 4 141 14 136 3.69e-26 103
Msa0896180 MtrunA17_Chr8g0342541 48.039 102 50 2 4 103 14 114 5.37e-26 103
Msa0896180 MtrunA17_Chr7g0274581 31.414 191 114 4 4 185 14 196 7.32e-26 100
Msa0896180 MtrunA17_Chr2g0330041 52.083 96 43 2 4 97 14 108 8.46e-26 103
Msa0896180 MtrunA17_Chr1g0203411 46.667 105 54 2 4 106 14 118 8.75e-26 102
Msa0896180 MtrunA17_Chr4g0022911 48.515 101 51 1 4 103 15 115 9.73e-26 102
Msa0896180 MtrunA17_Chr3g0103281 45.545 101 54 1 4 103 14 114 1.01e-25 102
Msa0896180 MtrunA17_Chr8g0360111 46.154 104 47 2 4 102 27 126 1.14e-25 101
Msa0896180 MtrunA17_Chr8g0387421 46.667 105 55 1 4 107 14 118 1.15e-25 102
Msa0896180 MtrunA17_Chr5g0410961 44.954 109 56 2 4 111 14 119 3.16e-25 101
Msa0896180 MtrunA17_Chr7g0228531 44.167 120 63 2 4 123 220 335 3.37e-25 102
Msa0896180 MtrunA17_Chr6g0452271 42.500 120 64 3 4 122 14 129 3.71e-25 101
Msa0896180 MtrunA17_Chr8g0342481 48.544 103 49 3 4 103 14 115 5.19e-25 101
Msa0896180 MtrunA17_Chr7g0270891 43.396 106 59 1 4 108 14 119 5.19e-25 101
Msa0896180 MtrunA17_Chr1g0167691 47.525 101 52 1 4 103 14 114 5.61e-25 99.4
Msa0896180 MtrunA17_Chr3g0131121 41.085 129 66 4 4 130 14 134 9.59e-25 99.4
Msa0896180 MtrunA17_Chr4g0058631 43.564 101 56 1 4 103 14 114 1.03e-24 100
Msa0896180 MtrunA17_Chr4g0048511 42.975 121 64 2 4 123 15 131 1.12e-24 100
Msa0896180 MtrunA17_Chr2g0281071 42.735 117 62 2 4 119 15 127 1.20e-24 100
Msa0896180 MtrunA17_Chr6g0470971 42.157 102 56 2 4 103 16 116 1.45e-24 98.6
Msa0896180 MtrunA17_Chr5g0395281 46.078 102 52 2 4 103 14 114 1.51e-24 99.0
Msa0896180 MtrunA17_Chr1g0193801 41.379 116 66 2 4 117 14 129 1.62e-24 100
Msa0896180 MtrunA17_Chr8g0349261 44.355 124 61 4 4 124 15 133 1.62e-24 99.0
Msa0896180 MtrunA17_Chr1g0211161 44.118 102 54 2 4 103 15 115 2.10e-24 97.1
Msa0896180 MtrunA17_Chr7g0261281 46.535 101 53 1 4 103 14 114 2.37e-24 98.2
Msa0896180 MtrunA17_Chr3g0117091 45.098 102 53 2 4 103 14 114 2.38e-24 99.4
Msa0896180 MtrunA17_Chr4g0039971 46.078 102 52 2 4 103 15 115 2.69e-24 99.4
Msa0896180 MtrunA17_Chr3g0099131 41.441 111 64 1 4 113 43 153 2.82e-24 100
Msa0896180 MtrunA17_Chr8g0334881 47.619 105 53 2 4 106 12 116 3.95e-24 98.2
Msa0896180 MtrunA17_Chr1g0193371 43.396 106 57 2 4 107 14 118 4.69e-24 98.6
Msa0896180 MtrunA17_Chr5g0434571 31.343 201 117 5 4 188 50 245 5.14e-24 98.6
Msa0896180 MtrunA17_Chr3g0088461 47.525 101 52 1 4 103 24 124 5.69e-24 98.2
Msa0896180 MtrunA17_Chr1g0194951 41.441 111 58 2 4 113 14 118 6.83e-24 98.2
Msa0896180 MtrunA17_Chr6g0453211 46.392 97 51 1 4 99 14 110 7.06e-24 97.4
Msa0896180 MtrunA17_Chr8g0354661 41.593 113 65 1 1 112 36 148 8.27e-24 99.4
Msa0896180 MtrunA17_Chr7g0271241 47.423 97 48 2 4 98 14 109 8.50e-24 98.2
Msa0896180 MtrunA17_Chr2g0323411 42.857 119 65 3 4 119 14 132 9.23e-24 97.4
Msa0896180 MtrunA17_Chr4g0032401 45.545 101 54 1 4 103 19 119 9.93e-24 97.4
Msa0896180 MtrunA17_Chr7g0217221 44.554 101 55 1 4 103 14 114 1.02e-23 96.3
Msa0896180 MtrunA17_Chr3g0080861 43.636 110 61 1 4 112 39 148 1.07e-23 99.0
Msa0896180 MtrunA17_Chr4g0022881 40.385 104 61 1 4 106 14 117 1.18e-23 95.1
Msa0896180 MtrunA17_Chr8g0343831 41.748 103 59 1 2 103 8 110 1.32e-23 95.5
Msa0896180 MtrunA17_Chr1g0192411 37.121 132 75 3 4 134 14 138 1.34e-23 97.8
Msa0896180 MtrunA17_Chr2g0328771 40.336 119 70 1 4 121 22 140 1.44e-23 96.7
Msa0896180 MtrunA17_Chr8g0385321 40.650 123 62 4 4 122 14 129 1.49e-23 96.7
Msa0896180 MtrunA17_Chr4g0044421 37.736 159 72 5 4 160 14 147 1.65e-23 93.6
Msa0896180 MtrunA17_Chr4g0037141 44.118 102 54 2 4 103 14 114 1.91e-23 95.9
Msa0896180 MtrunA17_Chr1g0167661 44.554 101 55 1 4 103 14 114 2.27e-23 94.7
Msa0896180 MtrunA17_Chr5g0434911 36.719 128 75 2 4 125 23 150 2.40e-23 95.1
Msa0896180 MtrunA17_Chr1g0154031 43.636 110 61 1 4 112 78 187 2.70e-23 97.1
Msa0896180 MtrunA17_Chr4g0068061 42.056 107 58 2 4 109 14 117 3.77e-23 95.9
Msa0896180 MtrunA17_Chr1g0180391 44.118 102 54 2 4 103 21 121 3.92e-23 93.6
Msa0896180 MtrunA17_Chr5g0417821 44.330 97 53 1 4 99 9 105 4.28e-23 94.7
Msa0896180 MtrunA17_Chr6g0453471 36.691 139 79 3 4 137 14 148 4.36e-23 95.9
Msa0896180 MtrunA17_Chr8g0346561 40.952 105 60 2 4 106 14 118 4.46e-23 95.1
Msa0896180 MtrunA17_Chr3g0135311 42.157 102 57 2 4 103 14 115 5.53e-23 95.5
Msa0896180 MtrunA17_Chr5g0400821 40.179 112 60 3 4 108 14 125 5.89e-23 94.7
Msa0896180 MtrunA17_Chr5g0440781 39.048 105 62 2 4 106 14 118 7.08e-23 92.0
Msa0896180 MtrunA17_Chr1g0151941 44.118 102 55 2 4 103 14 115 7.22e-23 93.6
Msa0896180 MtrunA17_Chr2g0327351 45.455 99 50 3 4 99 14 111 8.11e-23 94.7
Msa0896180 MtrunA17_Chr4g0022891 40.187 107 61 2 4 108 14 119 9.13e-23 93.2
Msa0896180 MtrunA17_Chr4g0060721 43.564 101 56 1 4 103 15 115 9.86e-23 94.7
Msa0896180 MtrunA17_Chr6g0450101 33.155 187 92 5 4 173 16 186 1.08e-22 92.0
Msa0896180 MtrunA17_Chr7g0275911 41.584 101 58 1 4 103 14 114 1.21e-22 92.8
Msa0896180 MtrunA17_Chr4g0070641 41.748 103 57 2 3 103 13 114 1.33e-22 90.9
Msa0896180 MtrunA17_Chr7g0228401 48.810 84 43 0 15 98 290 373 1.35e-22 95.9
Msa0896180 MtrunA17_Chr1g0168661 43.590 117 55 3 4 118 23 130 1.65e-22 92.8
Msa0896180 MtrunA17_Chr4g0070611 42.157 102 56 2 4 103 14 114 1.84e-22 93.6
Msa0896180 MtrunA17_Chr7g0220341 41.905 105 54 2 4 103 27 129 1.86e-22 92.8
Msa0896180 MtrunA17_Chr7g0228481 46.875 96 50 1 4 99 220 314 1.97e-22 94.7
Msa0896180 MtrunA17_Chr5g0441131 32.484 157 92 4 4 158 11 155 2.58e-22 90.5
Msa0896180 MtrunA17_Chr4g0042671 43.119 109 60 2 4 111 14 121 2.63e-22 94.4
Msa0896180 MtrunA17_Chr5g0434931 42.268 97 55 1 4 99 37 133 2.70e-22 92.4
Msa0896180 MtrunA17_Chr5g0440761 39.048 105 62 2 4 106 14 118 2.76e-22 92.4
Msa0896180 MtrunA17_Chr5g0441141 39.048 105 62 2 4 106 14 118 2.78e-22 92.4
Msa0896180 MtrunA17_Chr5g0434831 42.268 97 55 1 4 99 9 105 3.16e-22 90.5
Msa0896180 MtrunA17_Chr1g0152011 41.176 102 58 2 4 103 14 115 3.52e-22 93.2
Msa0896180 MtrunA17_Chr3g0110351 39.535 129 71 3 4 130 14 137 3.55e-22 92.8
Msa0896180 MtrunA17_Chr1g0186061 44.898 98 51 2 4 99 22 118 3.59e-22 91.7
Msa0896180 MtrunA17_Chr1g0209661 41.905 105 60 1 4 107 29 133 4.51e-22 92.4
Msa0896180 MtrunA17_Chr4g0030881 42.017 119 59 2 1 110 6 123 4.86e-22 91.3
Msa0896180 MtrunA17_Chr3g0121241 41.584 101 58 1 4 103 44 144 5.93e-22 92.0
Msa0896180 MtrunA17_Chr7g0228231 42.574 101 57 1 4 103 16 116 6.31e-22 90.1
Msa0896180 MtrunA17_Chr4g0072751 43.878 98 53 2 4 99 14 111 7.51e-22 92.4
Msa0896180 MtrunA17_Chr4g0013361 44.762 105 56 2 4 106 12 116 8.62e-22 91.7
Msa0896180 MtrunA17_Chr4g0054391 43.299 97 53 2 4 98 14 110 8.86e-22 91.3
Msa0896180 MtrunA17_Chr7g0228991 42.268 97 55 1 4 99 31 127 9.09e-22 90.9
Msa0896180 MtrunA17_Chr3g0092401 40.708 113 63 2 4 115 15 124 9.64e-22 91.7
Msa0896180 MtrunA17_Chr7g0247131 48.454 97 44 2 30 124 5 97 9.90e-22 90.9
Msa0896180 MtrunA17_Chr7g0254411 42.574 101 57 1 4 103 14 114 1.03e-21 92.0
Msa0896180 MtrunA17_Chr4g0057031 41.322 121 64 4 4 122 14 129 1.57e-21 90.5
Msa0896180 MtrunA17_Chr4g0028311 41.748 103 56 3 4 103 14 115 1.66e-21 91.3
Msa0896180 MtrunA17_Chr7g0240821 43.434 99 53 2 7 103 6 103 1.83e-21 89.4
Msa0896180 MtrunA17_Chr7g0264641 41.176 102 58 2 4 103 14 115 2.12e-21 90.1
Msa0896180 MtrunA17_Chr5g0434841 40.594 101 59 1 4 103 22 122 2.20e-21 90.9
Msa0896180 MtrunA17_Chr2g0322521 45.946 111 57 2 4 112 31 140 2.49e-21 91.7
Msa0896180 MtrunA17_Chr7g0217741 36.090 133 77 3 4 132 14 142 4.36e-21 89.7
Msa0896180 MtrunA17_Chr1g0194291 43.137 102 55 2 4 103 23 123 6.34e-21 88.6
Msa0896180 MtrunA17_Chr1g0194301 40.566 106 60 2 4 107 35 139 6.77e-21 88.6
Msa0896180 MtrunA17_Chr7g0238651 35.758 165 90 6 1 158 4 159 7.79e-21 89.7
Msa0896180 MtrunA17_Chr2g0327821 44.444 99 54 1 4 101 8 106 1.57e-20 87.0
Msa0896180 MtrunA17_Chr7g0233061 37.398 123 71 3 4 122 180 300 1.77e-20 89.0
Msa0896180 MtrunA17_Chr4g0068921 40.000 105 62 1 4 107 26 130 3.52e-20 85.1
Msa0896180 MtrunA17_Chr1g0177901 45.783 83 45 0 15 97 5 87 3.71e-20 85.5
Msa0896180 MtrunA17_Chr2g0293911 44.211 95 52 1 4 97 26 120 1.66e-18 82.8
Msa0896180 MtrunA17_Chr7g0269831 43.564 101 56 1 4 103 14 114 4.44e-18 82.0
Msa0896180 MtrunA17_Chr5g0416341 35.185 108 68 1 7 114 29 134 1.01e-17 81.6
Msa0896180 MtrunA17_Chr5g0425591 41.975 81 45 2 4 82 11 91 1.37e-17 75.5
Msa0896180 MtrunA17_Chr6g0487491 40.179 112 53 4 4 103 14 123 1.45e-17 79.3
Msa0896180 MtrunA17_Chr5g0434901 53.226 62 29 0 37 98 9 70 2.05e-17 75.5
Msa0896180 MtrunA17_Chr8g0362231 37.234 94 59 0 7 100 25 118 7.82e-17 79.0
Msa0896180 MtrunA17_Chr7g0229101 50.794 63 31 0 37 99 8 70 5.23e-16 74.3
Msa0896180 MtrunA17_Chr3g0093811 37.755 98 55 1 37 128 18 115 6.88e-16 74.7
Msa0896180 MtrunA17_Chr3g0099141 42.500 80 45 1 4 82 42 121 1.16e-15 71.6
Msa0896180 MtrunA17_Chr8g0342531 44.156 77 40 2 4 78 14 89 1.62e-15 72.0
Msa0896180 MtrunA17_Chr7g0229131 47.619 63 33 0 37 99 8 70 9.57e-15 70.1
Msa0896180 MtrunA17_Chr8g0342461 45.455 77 40 1 4 78 14 90 9.83e-15 68.9
Msa0896180 MtrunA17_Chr8g0342511 44.000 75 39 2 4 76 14 87 2.34e-14 67.0
Msa0896180 MtrunA17_Chr8g0342471 44.156 77 41 1 4 78 14 90 3.12e-14 67.8
Msa0896180 MtrunA17_Chr4g0042611 42.667 75 42 1 4 77 14 88 6.85e-14 65.5
Msa0896180 MtrunA17_Chr5g0395221 42.667 75 42 1 4 77 14 88 1.26e-13 64.7
Msa0896180 MtrunA17_Chr2g0323321 43.750 80 42 2 4 81 13 91 2.82e-13 64.3
Msa0896180 MtrunA17_Chr6g0483051 32.609 92 61 1 6 97 71 161 3.21e-13 68.6
Msa0896180 MtrunA17_Chr6g0483051 34.021 97 63 1 4 100 120 215 8.43e-11 61.6
Msa0896180 MtrunA17_Chr6g0453751 37.079 89 46 3 4 82 22 110 6.10e-13 63.9
Msa0896180 MtrunA17_Chr7g0274481 36.585 82 52 0 1 82 4 85 1.53e-11 63.9
Msa0896180 MtrunA17_Chr3g0104501 52.941 51 24 0 4 54 133 183 7.75e-11 59.7
Msa0896180 MtrunA17_Chr7g0233151 46.000 50 27 0 54 103 1 50 8.28e-11 59.3
Msa0896180 MtrunA17_Chr3g0104491 50.000 50 25 0 54 103 17 66 9.92e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896180 AT1G17950.1 55.466 247 89 8 1 232 2 242 3.06e-79 239
Msa0896180 AT1G73410.1 50.000 252 90 5 1 231 3 239 3.08e-70 216
Msa0896180 AT1G73410.2 82.727 110 19 0 1 110 3 112 1.06e-61 192
Msa0896180 AT4G33450.1 46.058 241 109 7 2 231 17 247 2.83e-60 190
Msa0896180 AT1G69560.1 65.468 139 45 2 2 137 105 243 1.23e-58 189
Msa0896180 AT1G69560.2 65.942 138 44 2 3 137 122 259 1.44e-58 189
Msa0896180 AT1G26780.1 68.254 126 34 1 1 120 95 220 5.12e-57 183
Msa0896180 AT1G26780.2 68.254 126 34 1 1 120 95 220 2.55e-56 184
Msa0896180 AT5G17800.1 72.897 107 29 0 1 107 90 196 3.75e-55 179
Msa0896180 AT3G29020.1 65.789 114 39 0 1 114 62 175 1.91e-53 172
Msa0896180 AT3G29020.2 65.789 114 39 0 1 114 64 177 8.12e-53 173
Msa0896180 AT5G39700.1 56.731 104 45 0 5 108 57 160 2.05e-38 132
Msa0896180 AT2G39880.1 43.030 165 82 2 4 156 50 214 1.29e-37 135
Msa0896180 AT3G50060.1 56.000 100 44 0 4 103 6 105 1.64e-36 130
Msa0896180 AT3G09230.1 53.448 116 52 1 4 117 55 170 4.21e-36 132
Msa0896180 AT3G55730.1 44.697 132 70 1 4 135 56 184 5.45e-36 131
Msa0896180 AT5G67300.1 56.000 100 44 0 4 103 6 105 1.57e-35 128
Msa0896180 AT3G09370.2 51.327 113 54 1 4 116 135 246 3.97e-33 125
Msa0896180 AT3G09370.3 51.327 113 54 1 4 116 143 254 4.26e-33 125
Msa0896180 AT3G09370.1 51.327 113 54 1 4 116 130 241 4.45e-33 125
Msa0896180 AT2G23290.1 52.000 100 48 0 4 103 13 112 6.38e-33 121
Msa0896180 AT4G37260.1 51.000 100 49 0 4 103 13 112 3.14e-32 120
Msa0896180 AT5G11510.5 39.716 141 80 2 4 142 81 218 7.82e-32 123
Msa0896180 AT5G11510.2 39.716 141 80 2 4 142 81 218 8.58e-32 123
Msa0896180 AT5G11510.3 39.716 141 80 2 4 142 81 218 8.97e-32 123
Msa0896180 AT5G11510.1 39.716 141 80 2 4 142 81 218 8.97e-32 123
Msa0896180 AT5G11510.4 39.716 141 80 2 4 142 81 218 8.97e-32 123
Msa0896180 AT5G02320.3 52.000 100 48 0 4 103 67 166 1.67e-31 120
Msa0896180 AT5G02320.1 52.000 100 48 0 4 103 127 226 1.73e-31 121
Msa0896180 AT5G02320.2 52.000 100 48 0 4 103 127 226 1.73e-31 121
Msa0896180 AT4G32730.5 45.690 116 60 1 4 119 87 199 2.50e-31 122
Msa0896180 AT4G32730.4 45.690 116 60 1 4 119 87 199 2.50e-31 122
Msa0896180 AT4G32730.3 45.690 116 60 1 4 119 87 199 2.50e-31 122
Msa0896180 AT4G32730.2 45.690 116 60 1 4 119 87 199 2.50e-31 122
Msa0896180 AT4G32730.1 45.690 116 60 1 4 119 87 199 2.79e-31 121
Msa0896180 AT5G40360.1 46.364 110 59 0 1 110 155 264 7.07e-30 114
Msa0896180 AT1G18570.1 41.007 139 72 4 4 138 15 147 3.45e-28 110
Msa0896180 AT3G12720.1 53.608 97 42 2 4 98 24 119 4.62e-28 108
Msa0896180 AT5G54230.1 49.485 97 48 1 4 99 14 110 5.76e-28 108
Msa0896180 AT3G27785.1 48.598 107 55 0 4 110 189 295 6.69e-28 110
Msa0896180 AT5G14750.1 46.535 101 53 1 4 103 18 118 1.09e-27 105
Msa0896180 AT3G23250.1 48.148 108 54 2 4 110 14 120 1.45e-27 107
Msa0896180 AT5G40330.1 46.535 101 53 1 4 103 14 114 1.53e-27 105
Msa0896180 AT4G26930.1 36.364 165 83 4 4 164 21 167 2.57e-27 108
Msa0896180 AT1G74080.1 36.646 161 87 5 4 157 14 166 6.65e-27 106
Msa0896180 AT2G26960.1 44.144 111 61 1 3 112 21 131 1.31e-26 107
Msa0896180 AT2G25230.1 42.308 104 58 2 6 108 28 130 1.34e-26 103
Msa0896180 AT4G25560.1 48.039 102 50 2 4 103 12 112 1.94e-26 103
Msa0896180 AT3G27920.1 45.545 101 54 1 4 103 16 116 3.02e-26 102
Msa0896180 AT3G13890.2 51.579 95 45 1 4 97 14 108 5.95e-26 103
Msa0896180 AT5G58850.1 46.667 105 56 0 4 108 105 209 5.95e-26 105
Msa0896180 AT1G63910.1 45.536 112 60 1 4 114 14 125 6.60e-26 104
Msa0896180 AT4G28110.1 48.454 97 49 1 4 99 14 110 1.13e-25 102
Msa0896180 AT3G11440.2 41.818 110 63 1 4 112 43 152 1.15e-25 104
Msa0896180 AT5G55020.1 42.478 113 64 1 1 112 25 137 1.58e-25 104
Msa0896180 AT5G65230.1 46.078 102 52 2 4 103 14 114 1.67e-25 102
Msa0896180 AT3G48920.1 47.917 96 49 1 4 98 20 115 1.86e-25 100
Msa0896180 AT4G05100.1 44.444 117 60 3 4 119 15 127 2.09e-25 102
Msa0896180 AT1G79180.1 46.535 101 53 1 4 103 16 116 2.17e-25 101
Msa0896180 AT5G06100.1 42.727 110 62 1 4 112 34 143 2.27e-25 103
Msa0896180 AT3G11440.3 41.818 110 63 1 4 112 43 152 2.29e-25 104
Msa0896180 AT3G11440.4 41.818 110 63 1 4 112 43 152 2.29e-25 104
Msa0896180 AT3G11440.1 41.818 110 63 1 4 112 43 152 2.29e-25 104
Msa0896180 AT4G18770.1 48.000 100 52 0 4 103 217 316 2.50e-25 103
Msa0896180 AT5G06100.5 42.727 110 62 1 4 112 34 143 3.91e-25 103
Msa0896180 AT5G06100.2 42.727 110 62 1 4 112 34 143 3.91e-25 103
Msa0896180 AT5G06100.3 42.727 110 62 1 4 112 34 143 3.91e-25 103
Msa0896180 AT5G06100.4 42.727 110 62 1 4 112 34 143 3.91e-25 103
Msa0896180 AT5G62470.1 39.552 134 77 2 4 136 14 144 4.09e-25 101
Msa0896180 AT2G32460.2 45.045 111 58 2 4 112 8 117 5.37e-25 102
Msa0896180 AT2G31180.1 47.525 101 52 1 4 103 14 114 5.46e-25 99.4
Msa0896180 AT2G32460.1 45.045 111 58 2 4 112 20 129 5.46e-25 102
Msa0896180 AT3G53200.1 46.939 98 49 2 4 99 11 107 6.02e-25 99.0
Msa0896180 AT5G11050.1 44.762 105 58 0 4 108 105 209 6.70e-25 102
Msa0896180 AT5G52600.1 47.959 98 48 2 4 99 14 110 6.95e-25 97.8
Msa0896180 AT2G26950.1 38.261 115 62 2 3 112 17 127 7.03e-25 101
Msa0896180 AT3G13890.1 48.077 104 44 2 4 97 14 117 7.24e-25 101
Msa0896180 AT4G01680.3 43.396 106 59 1 4 108 14 119 9.24e-25 98.6
Msa0896180 AT3G01140.2 45.545 101 54 1 4 103 14 114 1.40e-24 100
Msa0896180 AT3G30210.1 46.392 97 51 1 2 97 27 123 1.75e-24 98.6
Msa0896180 AT3G01140.1 45.545 101 54 1 4 103 57 157 1.84e-24 100
Msa0896180 AT3G61250.1 48.039 102 50 2 4 103 14 114 1.89e-24 99.0
Msa0896180 AT3G02940.2 47.423 97 50 1 4 99 14 110 2.05e-24 99.4
Msa0896180 AT1G57560.1 37.908 153 75 6 4 143 14 159 2.14e-24 99.4
Msa0896180 AT5G23000.1 46.602 103 51 3 4 103 14 115 2.17e-24 99.4
Msa0896180 AT5G10280.1 45.098 102 53 2 4 103 14 114 2.22e-24 99.4
Msa0896180 AT4G00540.2 45.631 103 53 1 4 103 103 205 2.46e-24 100
Msa0896180 AT3G13540.1 35.252 139 88 2 4 140 25 163 2.54e-24 97.8
Msa0896180 AT4G01680.1 43.396 106 59 1 4 108 14 119 2.55e-24 99.4
Msa0896180 AT1G57560.2 35.220 159 91 5 4 158 14 164 2.65e-24 98.2
Msa0896180 AT2G16720.1 38.000 150 79 5 4 146 14 156 2.75e-24 98.2
Msa0896180 AT4G38620.1 35.758 165 82 6 4 151 14 171 3.17e-24 98.2
Msa0896180 AT5G61420.2 35.714 154 92 3 4 154 14 163 3.44e-24 99.4
Msa0896180 AT3G02940.1 47.423 97 50 1 4 99 14 110 3.47e-24 98.6
Msa0896180 AT3G02940.3 47.423 97 50 1 4 99 14 110 3.47e-24 98.6
Msa0896180 AT1G74430.1 44.554 101 55 1 4 103 14 114 3.62e-24 97.8
Msa0896180 AT5G60890.1 40.152 132 70 4 4 133 14 138 4.07e-24 98.2
Msa0896180 AT5G07690.1 44.118 102 56 1 4 104 14 115 4.52e-24 98.6
Msa0896180 AT5G56110.1 45.545 101 54 1 4 103 14 114 4.85e-24 98.2
Msa0896180 AT4G00540.1 45.631 103 53 1 4 103 101 203 5.02e-24 99.8
Msa0896180 AT5G15310.4 44.554 101 55 1 4 103 14 114 5.12e-24 96.7
Msa0896180 AT5G07700.1 41.935 124 67 2 4 126 14 133 5.36e-24 98.6
Msa0896180 AT5G07700.2 41.935 124 67 2 4 126 14 133 5.36e-24 98.6
Msa0896180 AT1G35515.1 36.800 125 70 3 4 125 14 132 6.08e-24 95.9
Msa0896180 AT5G62470.2 40.441 136 74 4 4 136 14 145 6.29e-24 98.6
Msa0896180 AT5G12870.1 45.545 101 54 1 4 103 20 120 6.79e-24 97.1
Msa0896180 AT2G47460.1 30.144 209 135 4 4 201 14 222 7.26e-24 98.6
Msa0896180 AT1G22640.1 37.143 140 73 4 4 135 14 146 7.49e-24 96.7
Msa0896180 AT4G17785.2 46.000 100 51 2 4 101 15 113 7.89e-24 98.2
Msa0896180 AT5G15310.1 44.554 101 55 1 4 103 14 114 8.82e-24 97.8
Msa0896180 AT5G15310.2 44.554 101 55 1 4 103 14 114 9.04e-24 97.4
Msa0896180 AT4G17785.1 46.000 100 51 2 4 101 15 113 9.98e-24 98.2
Msa0896180 AT3G12820.1 46.078 102 52 2 4 103 16 116 1.01e-23 95.9
Msa0896180 AT5G14340.1 47.059 102 51 2 4 103 26 126 1.05e-23 96.7
Msa0896180 AT5G16770.4 41.026 117 64 2 4 119 14 126 1.07e-23 97.4
Msa0896180 AT5G16770.3 41.026 117 64 2 4 119 14 126 1.07e-23 97.4
Msa0896180 AT5G16770.1 41.026 117 64 2 4 119 14 126 1.70e-23 97.1
Msa0896180 AT5G16770.2 41.026 117 64 2 4 119 14 126 1.70e-23 97.1
Msa0896180 AT5G57620.1 41.284 109 62 2 4 110 14 122 1.74e-23 97.1
Msa0896180 AT3G49690.1 41.071 112 62 3 4 111 14 125 1.74e-23 96.7
Msa0896180 AT4G21440.1 34.810 158 95 4 4 153 14 171 2.08e-23 97.1
Msa0896180 AT5G35550.1 43.478 115 59 3 4 116 16 126 2.55e-23 95.1
Msa0896180 AT5G26660.1 41.880 117 64 3 4 117 14 129 2.71e-23 96.7
Msa0896180 AT5G49330.1 42.342 111 57 2 4 113 14 118 3.00e-23 96.7
Msa0896180 AT1G06180.1 46.078 102 52 2 4 103 14 114 3.41e-23 94.7
Msa0896180 AT1G09540.1 42.991 107 58 2 4 108 14 119 3.52e-23 96.7
Msa0896180 AT3G28470.1 47.423 97 50 1 4 99 14 110 3.67e-23 95.9
Msa0896180 AT5G52260.1 47.059 102 51 2 4 103 14 114 3.69e-23 95.1
Msa0896180 AT1G18710.1 38.843 121 69 2 4 123 14 130 3.90e-23 94.7
Msa0896180 AT3G28910.1 44.554 101 55 1 4 103 14 114 5.11e-23 95.5
Msa0896180 AT4G01680.2 40.678 118 57 2 4 108 14 131 6.84e-23 95.5
Msa0896180 AT1G74650.1 43.564 101 56 1 4 103 14 114 7.39e-23 95.1
Msa0896180 AT4G34990.1 39.344 122 65 3 4 122 14 129 8.55e-23 94.0
Msa0896180 AT3G60460.1 45.714 105 55 2 4 106 13 117 8.63e-23 94.7
Msa0896180 AT1G34670.1 43.564 101 56 1 4 103 14 114 9.74e-23 95.5
Msa0896180 AT3G08500.1 45.545 101 54 1 4 103 32 132 1.88e-22 94.4
Msa0896180 AT1G56160.1 43.137 102 55 2 4 103 16 116 1.94e-22 93.6
Msa0896180 AT5G16600.1 40.496 121 65 3 4 122 14 129 2.09e-22 94.0
Msa0896180 AT2G36890.1 41.935 124 65 4 4 124 14 133 2.29e-22 93.6
Msa0896180 AT5G65790.1 43.689 103 54 3 4 103 14 115 2.72e-22 94.4
Msa0896180 AT3G01530.1 45.098 102 53 2 4 103 27 127 2.72e-22 91.3
Msa0896180 AT4G09460.1 39.604 101 60 1 4 103 14 114 3.04e-22 92.0
Msa0896180 AT3G47600.1 44.118 102 54 2 4 103 14 114 3.19e-22 93.6
Msa0896180 AT5G14750.3 53.623 69 32 0 35 103 16 84 3.83e-22 89.7
Msa0896180 AT2G36890.2 41.935 124 65 4 4 124 55 174 3.83e-22 93.6
Msa0896180 AT1G16490.1 43.564 101 56 1 4 103 16 116 9.44e-22 91.3
Msa0896180 AT4G12350.1 42.857 105 57 2 1 103 11 114 9.81e-22 91.7
Msa0896180 AT1G66230.1 39.669 121 66 3 4 122 14 129 1.81e-21 90.9
Msa0896180 AT5G40350.1 41.284 109 58 2 4 111 19 122 2.50e-21 89.0
Msa0896180 AT5G40430.1 31.944 144 92 3 2 140 52 194 2.91e-21 89.7
Msa0896180 AT3G62610.1 41.584 101 58 1 4 103 14 114 3.59e-21 90.9
Msa0896180 AT3G27810.1 42.056 107 56 2 4 109 22 123 4.01e-21 88.6
Msa0896180 AT3G24310.1 46.875 96 48 2 4 97 20 114 4.55e-21 89.4
Msa0896180 AT3G46130.1 42.453 106 60 1 4 108 11 116 5.71e-21 89.0
Msa0896180 AT1G08810.1 42.574 101 57 1 4 103 14 114 5.77e-21 89.4
Msa0896180 AT5G59780.3 41.509 106 61 1 4 108 10 115 5.88e-21 88.6
Msa0896180 AT4G13480.1 46.875 96 48 2 4 97 8 102 6.01e-21 89.0
Msa0896180 AT1G79180.2 36.296 135 50 2 4 103 16 149 6.82e-21 89.7
Msa0896180 AT1G48000.1 44.211 95 52 1 4 97 34 128 8.05e-21 88.2
Msa0896180 AT2G47190.1 43.137 102 55 2 4 103 22 122 1.31e-20 88.2
Msa0896180 AT1G66370.1 39.815 108 60 2 4 108 10 115 2.36e-20 87.0
Msa0896180 AT1G25340.2 39.423 104 59 1 4 107 20 119 3.09e-20 87.4
Msa0896180 AT1G68320.1 41.509 106 59 2 4 107 21 125 3.55e-20 87.4
Msa0896180 AT1G25340.1 39.048 105 63 1 4 107 20 124 3.58e-20 87.4
Msa0896180 AT1G25340.3 39.423 104 59 1 4 107 20 119 4.46e-20 87.4
Msa0896180 AT4G37780.1 38.235 102 61 2 4 103 14 115 5.05e-20 87.0
Msa0896180 AT4G22680.1 38.843 121 67 4 4 122 14 129 1.81e-19 85.1
Msa0896180 AT1G66380.1 41.748 103 55 2 4 103 10 110 1.91e-19 82.0
Msa0896180 AT3G53200.2 53.968 63 29 0 37 99 12 74 3.00e-19 83.2
Msa0896180 AT5G49620.1 45.263 95 51 1 4 97 28 122 4.36e-19 84.7
Msa0896180 AT3G12820.2 52.239 67 32 0 37 103 2 68 1.04e-18 81.3
Msa0896180 AT3G06490.1 42.157 102 56 2 4 103 21 121 1.54e-18 83.2
Msa0896180 AT5G35550.2 48.750 80 38 1 37 116 53 129 2.02e-18 82.0
Msa0896180 AT2G02820.3 37.037 108 66 1 7 114 33 138 2.39e-18 82.8
Msa0896180 AT2G02820.1 37.037 108 66 1 7 114 33 138 3.87e-18 83.2
Msa0896180 AT1G56650.1 39.286 112 67 1 4 114 10 121 4.34e-18 80.9
Msa0896180 AT2G02820.2 37.037 108 66 1 7 114 33 138 5.68e-18 82.8
Msa0896180 AT5G62320.1 42.202 109 53 3 4 103 15 122 7.79e-18 80.1
Msa0896180 AT5G40350.2 48.000 75 34 1 37 111 8 77 1.35e-17 77.8
Msa0896180 AT1G66390.1 40.777 103 56 2 4 103 10 110 1.56e-17 79.3
Msa0896180 AT5G59780.2 48.611 72 37 0 37 108 23 94 1.94e-17 78.6
Msa0896180 AT3G27810.2 49.315 73 32 1 37 109 7 74 2.36e-17 77.4
Msa0896180 AT5G26660.2 45.122 82 44 1 37 117 17 98 2.58e-17 80.1
Msa0896180 AT3G46130.3 48.611 72 37 0 37 108 13 84 2.66e-17 78.6
Msa0896180 AT3G18100.1 38.298 94 58 0 4 97 546 639 3.64e-17 80.9
Msa0896180 AT3G18100.3 38.298 94 58 0 4 97 498 591 3.73e-17 80.9
Msa0896180 AT3G46130.4 48.611 72 37 0 37 108 23 94 3.74e-17 78.2
Msa0896180 AT3G18100.4 38.298 94 58 0 4 97 385 478 4.48e-17 80.5
Msa0896180 AT3G18100.2 37.113 97 61 0 4 100 333 429 4.57e-17 80.5
Msa0896180 AT1G14350.2 39.362 94 57 0 7 100 28 121 5.96e-17 79.7
Msa0896180 AT1G14350.1 39.362 94 57 0 7 100 28 121 5.96e-17 79.7
Msa0896180 AT2G37630.1 33.333 147 85 4 1 144 1 137 3.55e-16 77.0
Msa0896180 AT5G49620.2 39.450 109 51 2 4 97 28 136 1.24e-15 75.1
Msa0896180 AT3G47600.2 49.254 67 34 0 37 103 42 108 1.40e-15 75.1
Msa0896180 AT3G23250.2 50.000 64 31 1 47 110 1 63 1.68e-14 70.9
Msa0896180 AT1G66380.3 47.761 67 35 0 37 103 11 77 2.08e-14 67.8
Msa0896180 AT5G14750.4 47.368 57 30 0 47 103 1 57 2.83e-14 68.2
Msa0896180 AT5G14750.2 47.368 57 30 0 47 103 1 57 2.83e-14 68.2
Msa0896180 AT1G22640.3 35.789 95 49 2 47 135 1 89 6.01e-13 65.9
Msa0896180 AT1G71030.2 40.625 64 38 0 40 103 5 68 7.34e-12 62.8
Msa0896180 AT1G71030.1 40.625 64 38 0 40 103 19 82 9.30e-12 62.8
Msa0896180 AT1G09770.1 36.585 82 52 0 1 82 4 85 2.16e-11 63.9

Find 76 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTCCTATTCTTGAATT+AGG 0.083132 6_1:-85898883 Msa0896180:five_prime_UTR
GAAAGTGAAACTTGGGAAAT+TGG 0.209450 6_1:+85896459 None:intergenic
ACACACATATAACGTATTTA+AGG 0.231961 6_1:-85894167 Msa0896180:three_prime_UTR
AGCATTGTGGAACAAGAATT+TGG 0.234542 6_1:+85896431 None:intergenic
TTTCCCAAGTTTCACTTTCA+TGG 0.262907 6_1:-85896455 Msa0896180:CDS
TAATTCCTATTCTTGAATTA+GGG 0.290578 6_1:-85898882 Msa0896180:five_prime_UTR
AATGGATTTCTGTTTATTCT+TGG 0.293651 6_1:+85896779 None:intergenic
ATAACTTCTCATCGAATTCA+TGG 0.315936 6_1:-85896731 Msa0896180:CDS
ATCGAATTCATGGTAATAGA+TGG 0.326916 6_1:-85896721 Msa0896180:CDS
AATCATAGAACTCAATTGAT+TGG 0.354461 6_1:+85894449 None:intergenic
AAAGCTATGGACCTCATAAT+TGG 0.364887 6_1:-85898728 Msa0896180:CDS
GTTGAGATGGTTCAATCAAT+TGG 0.365948 6_1:-85896804 Msa0896180:CDS
AGACATGGGAAGAGAATATA+TGG 0.367108 6_1:+85899087 None:intergenic
GCAGCTATGTTGGCAACTTC+CGG 0.382606 6_1:+85894297 None:intergenic
AAGAAAAGTGGAAGATGAAA+AGG 0.387802 6_1:+85899003 None:intergenic
TCTTCTTCTTCCTCCGTGAA+TGG 0.390044 6_1:+85896761 None:intergenic
GGAAGTCAATCAAGATGTTA+TGG 0.394645 6_1:-85894368 Msa0896180:CDS
AAGTTTGTTTGATGATCATT+TGG 0.397165 6_1:+85896560 None:intergenic
TCTTGTTCCACAATGCTTCA+AGG 0.407745 6_1:-85896425 Msa0896180:intron
CATCTGAGGATGAGAAGCTT+AGG 0.415499 6_1:-85898761 Msa0896180:CDS
TTAGAACAATATCTCGATAT+AGG 0.417059 6_1:-85894227 Msa0896180:three_prime_UTR
AGAAACCCTAATTCAAGAAT+AGG 0.419756 6_1:+85898877 None:intergenic
TACAGCATTATCAGTCCGTC+CGG 0.437863 6_1:+85896676 None:intergenic
ATAATGCTGTAAAGAATCAT+TGG 0.449918 6_1:-85896664 Msa0896180:CDS
TGAGAAGCTTAGGGAGTTGG+TGG 0.459888 6_1:-85898751 Msa0896180:CDS
TGGACCATGAAAGTGAAACT+TGG 0.467936 6_1:+85896451 None:intergenic
AAACTATAGGTGAAGAGGAT+AGG 0.470701 6_1:-85898916 Msa0896180:five_prime_UTR
GAAAATCTCCGAGGAAGATC+AGG 0.471533 6_1:-85898693 Msa0896180:intron
GGAAAAGTTGTAGGTTGAGA+TGG 0.483490 6_1:-85896817 Msa0896180:CDS
GGAGAAAACTATAGGTGAAG+AGG 0.485091 6_1:-85898921 Msa0896180:five_prime_UTR
GGATGAGAAGCTTAGGGAGT+TGG 0.485907 6_1:-85898754 Msa0896180:CDS
GCTATGGCGTTCCAATTATG+AGG 0.499293 6_1:+85898717 None:intergenic
TCAAGCTCAACTCATACAAA+TGG 0.503360 6_1:+85894254 None:intergenic
AGAAAAGTGGAAGATGAAAA+GGG 0.508852 6_1:+85899004 None:intergenic
AAAGGGATATATATAAGAAA+AGG 0.512562 6_1:+85899021 None:intergenic
TGGCGAGGATTCGTCGAGAA+AGG 0.513383 6_1:-85896631 Msa0896180:CDS
ACAATATTGAAGACAAGAAG+TGG 0.516684 6_1:+85899060 None:intergenic
AGCAAGAGGGAGAAAACTAT+AGG 0.521411 6_1:-85898929 Msa0896180:five_prime_UTR
AGGGAGTTGGTGGAAAGCTA+TGG 0.521525 6_1:-85898741 Msa0896180:CDS
CAATATATATCAAAGAAAAG+TGG 0.524444 6_1:+85898991 None:intergenic
AGGTATAAGATCTATGCAAA+AGG 0.527507 6_1:-85896611 Msa0896180:CDS
ATCTGAGGATGAGAAGCTTA+GGG 0.530955 6_1:-85898760 Msa0896180:CDS
CTAAGCTTCTCATCCTCAGA+TGG 0.534492 6_1:+85898762 None:intergenic
ACAGCATTATCAGTCCGTCC+GGG 0.534922 6_1:+85896677 None:intergenic
GGACCATGAAAGTGAAACTT+GGG 0.536416 6_1:+85896452 None:intergenic
AAAATTGTGTGATGATCAAG+AGG 0.537064 6_1:+85896587 None:intergenic
GCTCAACTCATACAAATGGT+TGG 0.544485 6_1:+85894258 None:intergenic
CATCCTCAGATGGTCTCCAA+TGG 0.553569 6_1:+85898772 None:intergenic
GAATCATTGGCATGTGATGA+TGG 0.556027 6_1:-85896651 Msa0896180:CDS
AATAAACAGAAATCCATTCA+CGG 0.562387 6_1:-85896774 Msa0896180:CDS
TATATTAATATGTGTAGTAG+AGG 0.574832 6_1:-85898795 Msa0896180:exon
TCGAATTCATGGTAATAGAT+GGG 0.576280 6_1:-85896720 Msa0896180:CDS
ATATGTGTAGTAGAGGCCAT+TGG 0.582916 6_1:-85898788 Msa0896180:CDS
AGATGTACCTTGAAGCATTG+TGG 0.585558 6_1:+85896418 None:intergenic
GGGAAGAGAATATATGGTGG+GGG 0.588730 6_1:+85899093 None:intergenic
ATGGGAAGAGAATATATGGT+GGG 0.590124 6_1:+85899091 None:intergenic
GTCATTGCAAGACACTTCCC+CGG 0.595561 6_1:-85896695 Msa0896180:CDS
GATACTTCTCAACAAAAGAG+TGG 0.604960 6_1:+85896522 None:intergenic
ATCATATAGATCAAAGCAAG+AGG 0.608293 6_1:-85898943 Msa0896180:five_prime_UTR
ACAAGAAGTGGAAAGAGACA+TGG 0.608601 6_1:+85899072 None:intergenic
TGATCTATATGATCAACTCA+AGG 0.608924 6_1:+85898953 None:intergenic
CAAGAAGTGGAAAGAGACAT+GGG 0.611099 6_1:+85899073 None:intergenic
TTGCAAGACACTTCCCCGGA+CGG 0.616706 6_1:-85896691 Msa0896180:CDS
CAGCATTATCAGTCCGTCCG+GGG 0.621205 6_1:+85896678 None:intergenic
AGGCCATTGGAGACCATCTG+AGG 0.626741 6_1:-85898775 Msa0896180:CDS
TAATGCTAGAAGAGATGATG+AGG 0.631566 6_1:-85894389 Msa0896180:CDS
TGGGAAGAGAATATATGGTG+GGG 0.636808 6_1:+85899092 None:intergenic
AAAGAGCTATTTGAGACACG+AGG 0.653504 6_1:+85896482 None:intergenic
TGTTATGGAACTGAAGAACA+AGG 0.658552 6_1:-85894353 Msa0896180:CDS
CATGGGAAGAGAATATATGG+TGG 0.663893 6_1:+85899090 None:intergenic
TCATATAGATCAAAGCAAGA+GGG 0.678055 6_1:-85898942 Msa0896180:five_prime_UTR
AAGAGCTATTTGAGACACGA+GGG 0.684888 6_1:+85896483 None:intergenic
ATTGGCATGTGATGATGGCG+AGG 0.687951 6_1:-85896646 Msa0896180:CDS
AATTCATGGTAATAGATGGG+CGG 0.709335 6_1:-85896717 Msa0896180:CDS
AAACAGAAATCCATTCACGG+AGG 0.757168 6_1:-85896771 Msa0896180:CDS
GCCATAGCTGAAAATCTCCG+AGG 0.757333 6_1:-85898702 Msa0896180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTTATTAAAAAAAT+TGG + chr6_1:85895429-85895448 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr6_1:85897506-85897525 Msa0896180:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr6_1:85897507-85897526 Msa0896180:intron 0.0%
!! TATATATATATATATATATA+GGG + chr6_1:85897506-85897525 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr6_1:85897507-85897526 None:intergenic 0.0%
!!! TTATTGTAATTTTTTTATCT+AGG - chr6_1:85894382-85894401 Msa0896180:CDS 10.0%
!! ATAAATAAGAATAATTGATA+TGG + chr6_1:85895133-85895152 None:intergenic 10.0%
!! TTTAATCAATATTATATTTG+GGG - chr6_1:85895508-85895527 Msa0896180:intron 10.0%
!!! AATTGATTAAATATTTTTCT+AGG - chr6_1:85895827-85895846 Msa0896180:intron 10.0%
!! AAATGTAAAAAAAAATTGTA+GGG - chr6_1:85895894-85895913 Msa0896180:intron 10.0%
!!! TTTTTTTACTAATAATCTTA+GGG + chr6_1:85897116-85897135 None:intergenic 10.0%
!!! TTTTTTTTACTAATAATCTT+AGG + chr6_1:85897117-85897136 None:intergenic 10.0%
!!! AATAGAATAATTTTTTAAGA+GGG + chr6_1:85897208-85897227 None:intergenic 10.0%
!!! AAATAGAATAATTTTTTAAG+AGG + chr6_1:85897209-85897228 None:intergenic 10.0%
!!! ATTTTATTTTGGTTTTTTAA+CGG + chr6_1:85898028-85898047 None:intergenic 10.0%
!! AAAACCAAAATAAAATATTA+TGG - chr6_1:85898032-85898051 Msa0896180:intron 10.0%
!! CAAAATTAATAAATAAGGAT+TGG + chr6_1:85894934-85894953 None:intergenic 15.0%
!! CGTAACAAAATTAATAAATA+AGG + chr6_1:85894939-85894958 None:intergenic 15.0%
!!! AATTTAGATCCAAAATTTTA+GGG + chr6_1:85895282-85895301 None:intergenic 15.0%
!!! AAATTTAGATCCAAAATTTT+AGG + chr6_1:85895283-85895302 None:intergenic 15.0%
!! AAAAAAAGAGGAAAATATTA+GGG + chr6_1:85895347-85895366 None:intergenic 15.0%
!! AAAAAAAAGAGGAAAATATT+AGG + chr6_1:85895348-85895367 None:intergenic 15.0%
!! TAGTTTATTTGATAAATTGT+GGG - chr6_1:85895646-85895665 Msa0896180:intron 15.0%
!! CATATATAATATTTCTCTTT+GGG + chr6_1:85895741-85895760 None:intergenic 15.0%
!! TCTAGTTAATTGATTAAATT+TGG - chr6_1:85895787-85895806 Msa0896180:intron 15.0%
!! CAAATGTAAAAAAAAATTGT+AGG - chr6_1:85895893-85895912 Msa0896180:intron 15.0%
!! AAATAAATGATTTATTGAGA+TGG - chr6_1:85896035-85896054 Msa0896180:intron 15.0%
!! TTATTTAATCCAACATTATA+AGG - chr6_1:85896160-85896179 Msa0896180:intron 15.0%
!! CAAATTAAACTTATAAATCA+AGG + chr6_1:85896321-85896340 None:intergenic 15.0%
!!! ATTTTGTCTTGAATTTTATT+AGG - chr6_1:85896365-85896384 Msa0896180:intron 15.0%
!!! TTTTGTCTTGAATTTTATTA+GGG - chr6_1:85896366-85896385 Msa0896180:intron 15.0%
!! TTATATTGAAGTCATATATA+GGG + chr6_1:85896823-85896842 None:intergenic 15.0%
!! TTTATATTGAAGTCATATAT+AGG + chr6_1:85896824-85896843 None:intergenic 15.0%
!!! TGATGTTATAGTATTAATTT+TGG + chr6_1:85896917-85896936 None:intergenic 15.0%
!! AAATTAATACTATAACATCA+AGG - chr6_1:85896917-85896936 Msa0896180:intron 15.0%
!! TAAATTAAAGAAAGTTCAAT+AGG - chr6_1:85896978-85896997 Msa0896180:intron 15.0%
!! TCAACAAAAATTAATGTATT+TGG + chr6_1:85897940-85897959 None:intergenic 15.0%
!!! TCAATTTTTACTTACATTTT+AGG - chr6_1:85897960-85897979 Msa0896180:intron 15.0%
!!! ACAACCATAATATTTTATTT+TGG + chr6_1:85898039-85898058 None:intergenic 15.0%
!! AAGTATATGAAGAAAAAAAA+GGG + chr6_1:85898347-85898366 None:intergenic 15.0%
!!! TATATATACCAATTTTCTAA+TGG - chr6_1:85898681-85898700 Msa0896180:intron 15.0%
!! AAAGGGATATATATAAGAAA+AGG + chr6_1:85894186-85894205 None:intergenic 20.0%
!! CAATATATATCAAAGAAAAG+TGG + chr6_1:85894216-85894235 None:intergenic 20.0%
!! ATAATTCCTATTCTTGAATT+AGG - chr6_1:85894321-85894340 Msa0896180:CDS 20.0%
!! TAATTCCTATTCTTGAATTA+GGG - chr6_1:85894322-85894341 Msa0896180:CDS 20.0%
!! TATATTAATATGTGTAGTAG+AGG - chr6_1:85894409-85894428 Msa0896180:CDS 20.0%
!!! TTTTTTAGATGAAATTTGCT+AGG + chr6_1:85895026-85895045 None:intergenic 20.0%
!!! TTTTCTTAAAAAAAAGCAAG+AGG + chr6_1:85895077-85895096 None:intergenic 20.0%
!! GTAGTTTATTTGATAAATTG+TGG - chr6_1:85895645-85895664 Msa0896180:intron 20.0%
!! GCATATATAATATTTCTCTT+TGG + chr6_1:85895742-85895761 None:intergenic 20.0%
!! AATTAACTAGATTATTTACC+CGG + chr6_1:85895778-85895797 None:intergenic 20.0%
!! TTATTTGATGTGTTCAATAA+AGG + chr6_1:85896021-85896040 None:intergenic 20.0%
!!! ATTTTCTTGTGTGTATATAA+GGG - chr6_1:85896105-85896124 Msa0896180:intron 20.0%
!! ATATAAGAATGATAATTTGG+TGG + chr6_1:85896297-85896316 None:intergenic 20.0%
!! GGAATATAAGAATGATAATT+TGG + chr6_1:85896300-85896319 None:intergenic 20.0%
!! AACTCATTAAATCAATTACA+TGG - chr6_1:85897007-85897026 Msa0896180:intron 20.0%
!!! GTTAATTGTTTTTAGTCTTA+GGG + chr6_1:85897147-85897166 None:intergenic 20.0%
!!! AGTTAATTGTTTTTAGTCTT+AGG + chr6_1:85897148-85897167 None:intergenic 20.0%
!!! TTAGAAAGTTAGATAAGTTT+TGG + chr6_1:85897265-85897284 None:intergenic 20.0%
!!! CATTTTGACTAAAACAAATA+CGG - chr6_1:85897441-85897460 Msa0896180:intron 20.0%
!!! CATTTTTCAGAGAATATAAT+CGG + chr6_1:85897852-85897871 None:intergenic 20.0%
!!! TTTTTACTTACATTTTAGGA+CGG - chr6_1:85897964-85897983 Msa0896180:intron 20.0%
!!! TTTTTAACGGTACAAATAAT+TGG + chr6_1:85898015-85898034 None:intergenic 20.0%
!!! ACGGTTTAATTTCTTTTTTT+TGG - chr6_1:85898176-85898195 Msa0896180:intron 20.0%
!! CAAGTATATGAAGAAAAAAA+AGG + chr6_1:85898348-85898367 None:intergenic 20.0%
! GATCATAATTTGAGGAAATT+AGG - chr6_1:85894815-85894834 Msa0896180:intron 25.0%
! TTAAAAAAAAGCAAGAGGAT+AGG + chr6_1:85895072-85895091 None:intergenic 25.0%
!! AAATTTAGAGCCAAAAGTTT+AGG + chr6_1:85895235-85895254 None:intergenic 25.0%
!! AAATATTAGGGTTTTTGTTG+AGG + chr6_1:85895335-85895354 None:intergenic 25.0%
! ATGGGTAAAGAAAAAAAAAG+AGG + chr6_1:85895359-85895378 None:intergenic 25.0%
!! GTGTTTAGAATAGATAAAGA+GGG + chr6_1:85895558-85895577 None:intergenic 25.0%
!! TGTGTTTAGAATAGATAAAG+AGG + chr6_1:85895559-85895578 None:intergenic 25.0%
! GAAATATTATATATGCAACC+CGG - chr6_1:85895746-85895765 Msa0896180:intron 25.0%
! AAATATTATATATGCAACCC+GGG - chr6_1:85895747-85895766 Msa0896180:intron 25.0%
! CATAACAAGTGAAAGTAAAA+TGG - chr6_1:85895919-85895938 Msa0896180:intron 25.0%
!!! TTTTTTTTTCCACATGCTTT+TGG - chr6_1:85895946-85895965 Msa0896180:intron 25.0%
!! GATTTTCTTGTGTGTATATA+AGG - chr6_1:85896104-85896123 Msa0896180:intron 25.0%
! AAAAGACAACCTTATAATGT+TGG + chr6_1:85896172-85896191 None:intergenic 25.0%
! GTATTGTTAATTTCATGTCT+AGG - chr6_1:85896215-85896234 Msa0896180:intron 25.0%
!! TTTTATTAGGGAAAAGTTGT+AGG - chr6_1:85896378-85896397 Msa0896180:intron 25.0%
!! AATGGATTTCTGTTTATTCT+TGG + chr6_1:85896428-85896447 None:intergenic 25.0%
! AATAAACAGAAATCCATTCA+CGG - chr6_1:85896430-85896449 Msa0896180:CDS 25.0%
! ATAATGCTGTAAAGAATCAT+TGG - chr6_1:85896540-85896559 Msa0896180:CDS 25.0%
!! AAGTTTGTTTGATGATCATT+TGG + chr6_1:85896647-85896666 None:intergenic 25.0%
! TGATTATAGAATTACCATCA+TGG - chr6_1:85896848-85896867 Msa0896180:intron 25.0%
!! TTTGAAATTGTGATACATCA+TGG - chr6_1:85896871-85896890 Msa0896180:intron 25.0%
!!! TAATTTTTTAAGAGGGTATG+AGG + chr6_1:85897201-85897220 None:intergenic 25.0%
!! CAGGTTTTACTTTAGTTAAA+AGG + chr6_1:85897296-85897315 None:intergenic 25.0%
! TTCATTCTCTAATAAATGTG+TGG + chr6_1:85897393-85897412 None:intergenic 25.0%
! ATTTATTAGAGAATGAACGT+GGG - chr6_1:85897396-85897415 Msa0896180:intron 25.0%
!! GTTGACTAATTTTTGCTTAA+CGG + chr6_1:85897886-85897905 None:intergenic 25.0%
! GAAAAAAAAGGGAAATAATC+TGG + chr6_1:85898336-85898355 None:intergenic 25.0%
! CTTTAAACAGTATAGCAAAA+TGG + chr6_1:85898484-85898503 None:intergenic 25.0%
!! TATACTGTTTAAAGTGTCAA+AGG - chr6_1:85898490-85898509 Msa0896180:intron 25.0%
! ATCAATGACCATTAGAAAAT+TGG + chr6_1:85898692-85898711 None:intergenic 25.0%
! AATCATAGAACTCAATTGAT+TGG + chr6_1:85898758-85898777 None:intergenic 25.0%
!!! ATCAGTTACTTCACTTTTAT+TGG + chr6_1:85898796-85898815 None:intergenic 25.0%
!!! TTCATTGATTTTTTGTCTAC+CGG - chr6_1:85898888-85898907 Msa0896180:five_prime_UTR 25.0%
! TTAGAACAATATCTCGATAT+AGG - chr6_1:85898977-85898996 Msa0896180:five_prime_UTR 25.0%
! ACACACATATAACGTATTTA+AGG - chr6_1:85899037-85899056 Msa0896180:five_prime_UTR 25.0%
!! TCACAGTTTTTGCAATATAA+TGG + chr6_1:85899106-85899125 None:intergenic 25.0%
ACAATATTGAAGACAAGAAG+TGG + chr6_1:85894147-85894166 None:intergenic 30.0%
AGAAAAGTGGAAGATGAAAA+GGG + chr6_1:85894203-85894222 None:intergenic 30.0%
AAGAAAAGTGGAAGATGAAA+AGG + chr6_1:85894204-85894223 None:intergenic 30.0%
TGATCTATATGATCAACTCA+AGG + chr6_1:85894254-85894273 None:intergenic 30.0%
ATCATATAGATCAAAGCAAG+AGG - chr6_1:85894261-85894280 Msa0896180:three_prime_UTR 30.0%
TCATATAGATCAAAGCAAGA+GGG - chr6_1:85894262-85894281 Msa0896180:three_prime_UTR 30.0%
AGAAACCCTAATTCAAGAAT+AGG + chr6_1:85894330-85894349 None:intergenic 30.0%
! TAATTTTACCTGATCTTCCT+CGG + chr6_1:85894522-85894541 None:intergenic 30.0%
TTTCTTGTATACATACTCGA+TGG + chr6_1:85894620-85894639 None:intergenic 30.0%
TGATAGCATACTTAACTCTT+TGG - chr6_1:85894641-85894660 Msa0896180:intron 30.0%
AACCTAATAAAGCAAATGAG+CGG + chr6_1:85894990-85895009 None:intergenic 30.0%
TTAGTGGAGGGAAAAAAATT+AGG + chr6_1:85895184-85895203 None:intergenic 30.0%
CAAACCTAATAAAGGATTAG+TGG + chr6_1:85895200-85895219 None:intergenic 30.0%
AGTTGTTGCAAACCTAATAA+AGG + chr6_1:85895208-85895227 None:intergenic 30.0%
! ACAACTCAATCCTAAACTTT+TGG - chr6_1:85895222-85895241 Msa0896180:intron 30.0%
! AATCCTCAACCCTAAAATTT+TGG - chr6_1:85895270-85895289 Msa0896180:intron 30.0%
! TTGTGGGTTATAATGAGTAA+TGG - chr6_1:85895662-85895681 Msa0896180:intron 30.0%
TGTGTTCAATAAAGGTAGAA+GGG + chr6_1:85896013-85896032 None:intergenic 30.0%
ATGTGTTCAATAAAGGTAGA+AGG + chr6_1:85896014-85896033 None:intergenic 30.0%
! TTGTGTGTATATAAGGGTTT+TGG - chr6_1:85896111-85896130 Msa0896180:intron 30.0%
TGTTAATTTCATGTCTAGGA+TGG - chr6_1:85896219-85896238 Msa0896180:intron 30.0%
! GTTAATTTCATGTCTAGGAT+GGG - chr6_1:85896220-85896239 Msa0896180:intron 30.0%
! AGAATGATAATTTGGTGGTA+GGG + chr6_1:85896292-85896311 None:intergenic 30.0%
! AAGAATGATAATTTGGTGGT+AGG + chr6_1:85896293-85896312 None:intergenic 30.0%
ATAACTTCTCATCGAATTCA+TGG - chr6_1:85896473-85896492 Msa0896180:CDS 30.0%
ATCGAATTCATGGTAATAGA+TGG - chr6_1:85896483-85896502 Msa0896180:CDS 30.0%
TCGAATTCATGGTAATAGAT+GGG - chr6_1:85896484-85896503 Msa0896180:CDS 30.0%
AGGTATAAGATCTATGCAAA+AGG - chr6_1:85896593-85896612 Msa0896180:CDS 30.0%
AAAATTGTGTGATGATCAAG+AGG + chr6_1:85896620-85896639 None:intergenic 30.0%
ATCACAATTTCAAACCATGA+TGG + chr6_1:85896865-85896884 None:intergenic 30.0%
AGTTGTTAATTAAGTAGGGA+GGG + chr6_1:85897091-85897110 None:intergenic 30.0%
TAGTTGTTAATTAAGTAGGG+AGG + chr6_1:85897092-85897111 None:intergenic 30.0%
! GGCTAGTTGTTAATTAAGTA+GGG + chr6_1:85897095-85897114 None:intergenic 30.0%
GATGAAATGTATCATAGTAG+TGG + chr6_1:85897343-85897362 None:intergenic 30.0%
! TGAATAGTTTAGAGTTGGTT+GGG + chr6_1:85897370-85897389 None:intergenic 30.0%
CATTTATTAGAGAATGAACG+TGG - chr6_1:85897395-85897414 Msa0896180:intron 30.0%
TTTGACTAAAACAAATACGG+AGG - chr6_1:85897444-85897463 Msa0896180:intron 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr6_1:85897586-85897605 None:intergenic 30.0%
!! AAAGACACCAACTTACTTTT+AGG - chr6_1:85897631-85897650 Msa0896180:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr6_1:85897683-85897702 Msa0896180:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr6_1:85897701-85897720 None:intergenic 30.0%
! ACTAATTTTTGCTTAACGGA+GGG + chr6_1:85897882-85897901 None:intergenic 30.0%
CTAAAAAGTTCGTGAATTGT+CGG - chr6_1:85898151-85898170 Msa0896180:intron 30.0%
!!! CTTTTTTTTGGTTCTGTCTT+TGG - chr6_1:85898188-85898207 Msa0896180:intron 30.0%
ATAAGTCGCTAACATATCAT+AGG - chr6_1:85898391-85898410 Msa0896180:intron 30.0%
ACAGTATAGCAAAATGGTTT+GGG + chr6_1:85898478-85898497 None:intergenic 30.0%
AACAGTATAGCAAAATGGTT+TGG + chr6_1:85898479-85898498 None:intergenic 30.0%
AGGATCTAGACATTTGATAT+TGG + chr6_1:85898560-85898579 None:intergenic 30.0%
! ACTTAATTTTGCAGCTATGT+TGG + chr6_1:85898920-85898939 None:intergenic 30.0%
ATGGGAAGAGAATATATGGT+GGG + chr6_1:85894116-85894135 None:intergenic 35.0%
AGACATGGGAAGAGAATATA+TGG + chr6_1:85894120-85894139 None:intergenic 35.0%
AAACTATAGGTGAAGAGGAT+AGG - chr6_1:85894288-85894307 Msa0896180:CDS 35.0%
AAAGCTATGGACCTCATAAT+TGG - chr6_1:85894476-85894495 Msa0896180:intron 35.0%
CACAGCTAGATCATAATTTG+AGG - chr6_1:85894807-85894826 Msa0896180:intron 35.0%
ACCAATACACAGCTAAAATC+TGG + chr6_1:85894902-85894921 None:intergenic 35.0%
AAATGAGCGGGGAAAAAATT+AGG + chr6_1:85894977-85894996 None:intergenic 35.0%
ACCTAATAAAGCAAATGAGC+GGG + chr6_1:85894989-85895008 None:intergenic 35.0%
CAAGAGGATAGGAATGAAAT+TGG + chr6_1:85895061-85895080 None:intergenic 35.0%
! CCTAATAAAGGATTAGTGGA+GGG + chr6_1:85895196-85895215 None:intergenic 35.0%
! ACCTAATAAAGGATTAGTGG+AGG + chr6_1:85895197-85895216 None:intergenic 35.0%
!!! GATCCAAAATTTTAGGGTTG+AGG + chr6_1:85895276-85895295 None:intergenic 35.0%
CAAAAAGTTTAGTTGAGCTC+AGG + chr6_1:85895403-85895422 None:intergenic 35.0%
GAAACTCAAATTGTGTGCAT+GGG + chr6_1:85895989-85896008 None:intergenic 35.0%
AGAAACTCAAATTGTGTGCA+TGG + chr6_1:85895990-85896009 None:intergenic 35.0%
GAAAATCTCTTTCACTATGC+TGG + chr6_1:85896091-85896110 None:intergenic 35.0%
TAAAGACTGTAGTGATAGGA+AGG + chr6_1:85896259-85896278 None:intergenic 35.0%
GAGTTAAAGACTGTAGTGAT+AGG + chr6_1:85896263-85896282 None:intergenic 35.0%
GTTGAGATGGTTCAATCAAT+TGG - chr6_1:85896400-85896419 Msa0896180:intron 35.0%
AATTCATGGTAATAGATGGG+CGG - chr6_1:85896487-85896506 Msa0896180:CDS 35.0%
GATACTTCTCAACAAAAGAG+TGG + chr6_1:85896685-85896704 None:intergenic 35.0%
GAAAGTGAAACTTGGGAAAT+TGG + chr6_1:85896748-85896767 None:intergenic 35.0%
TTTCCCAAGTTTCACTTTCA+TGG - chr6_1:85896749-85896768 Msa0896180:CDS 35.0%
AGCATTGTGGAACAAGAATT+TGG + chr6_1:85896776-85896795 None:intergenic 35.0%
ATGGACCAAAGTTATTCACA+GGG - chr6_1:85897026-85897045 Msa0896180:intron 35.0%
!! GGGCTAGTTGTTAATTAAGT+AGG + chr6_1:85897096-85897115 None:intergenic 35.0%
! GTGAATAGTTTAGAGTTGGT+TGG + chr6_1:85897371-85897390 None:intergenic 35.0%
! TGTGGTGAATAGTTTAGAGT+TGG + chr6_1:85897375-85897394 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr6_1:85897573-85897592 Msa0896180:intron 35.0%
!! ACACCAACTTACTTTTAGGA+AGG - chr6_1:85897635-85897654 Msa0896180:intron 35.0%
ACACCTTCCTAAAAGTAAGT+TGG + chr6_1:85897641-85897660 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - chr6_1:85897712-85897731 Msa0896180:intron 35.0%
TGATAAAAGACACCACCAAA+GGG - chr6_1:85897713-85897732 Msa0896180:intron 35.0%
! CGGTTCAAAAAAGTACAACT+CGG + chr6_1:85897832-85897851 None:intergenic 35.0%
! GACTAATTTTTGCTTAACGG+AGG + chr6_1:85897883-85897902 None:intergenic 35.0%
!!! TACTTACATTTTAGGACGGA+AGG - chr6_1:85897968-85897987 Msa0896180:intron 35.0%
! CGTCACAGTTCATTTCTTTT+CGG + chr6_1:85898098-85898117 None:intergenic 35.0%
CGAAAAGAAATGAACTGTGA+CGG - chr6_1:85898096-85898115 Msa0896180:intron 35.0%
! TTTTTCTAAACAGCCCTAAG+TGG - chr6_1:85898211-85898230 Msa0896180:intron 35.0%
AAAAGGGAAATAATCTGGTG+TGG + chr6_1:85898331-85898350 None:intergenic 35.0%
CATATCATAGGTTTCTCTCT+TGG - chr6_1:85898403-85898422 Msa0896180:intron 35.0%
CTAGACATTTGATATTGGTG+TGG + chr6_1:85898555-85898574 None:intergenic 35.0%
TAATGCTAGAAGAGATGATG+AGG - chr6_1:85898815-85898834 Msa0896180:five_prime_UTR 35.0%
GGAAGTCAATCAAGATGTTA+TGG - chr6_1:85898836-85898855 Msa0896180:five_prime_UTR 35.0%
TGTTATGGAACTGAAGAACA+AGG - chr6_1:85898851-85898870 Msa0896180:five_prime_UTR 35.0%
TCAAGCTCAACTCATACAAA+TGG + chr6_1:85898953-85898972 None:intergenic 35.0%
! AATATATGGTGGGGGAAGAT+GGG + chr6_1:85894106-85894125 None:intergenic 40.0%
TGGGAAGAGAATATATGGTG+GGG + chr6_1:85894115-85894134 None:intergenic 40.0%
CATGGGAAGAGAATATATGG+TGG + chr6_1:85894117-85894136 None:intergenic 40.0%
CAAGAAGTGGAAAGAGACAT+GGG + chr6_1:85894134-85894153 None:intergenic 40.0%
ACAAGAAGTGGAAAGAGACA+TGG + chr6_1:85894135-85894154 None:intergenic 40.0%
AGCAAGAGGGAGAAAACTAT+AGG - chr6_1:85894275-85894294 Msa0896180:exon 40.0%
GGAGAAAACTATAGGTGAAG+AGG - chr6_1:85894283-85894302 Msa0896180:exon 40.0%
ATATGTGTAGTAGAGGCCAT+TGG - chr6_1:85894416-85894435 Msa0896180:CDS 40.0%
ATCTGAGGATGAGAAGCTTA+GGG - chr6_1:85894444-85894463 Msa0896180:CDS 40.0%
!!! GCCAGATTTTAGCTGTGTAT+TGG - chr6_1:85894898-85894917 Msa0896180:intron 40.0%
CCTAATAAAGCAAATGAGCG+GGG + chr6_1:85894988-85895007 None:intergenic 40.0%
CCCTCCACTAATCCTTTATT+AGG - chr6_1:85895193-85895212 Msa0896180:intron 40.0%
!! GGGTTTTTGTTGAGGTATCA+TGG + chr6_1:85895327-85895346 None:intergenic 40.0%
! ATTATTTACCCGGTTTTGCC+CGG + chr6_1:85895768-85895787 None:intergenic 40.0%
! TAAGTGCAACCAAAAGCATG+TGG + chr6_1:85895958-85895977 None:intergenic 40.0%
AAATTGTGTGCATGGGTGTA+GGG + chr6_1:85895982-85896001 None:intergenic 40.0%
! TGATAATTTGGTGGTAGGGA+TGG + chr6_1:85896288-85896307 None:intergenic 40.0%
! GGAAAAGTTGTAGGTTGAGA+TGG - chr6_1:85896387-85896406 Msa0896180:intron 40.0%
AAACAGAAATCCATTCACGG+AGG - chr6_1:85896433-85896452 Msa0896180:CDS 40.0%
GAATCATTGGCATGTGATGA+TGG - chr6_1:85896553-85896572 Msa0896180:CDS 40.0%
! AAGAGCTATTTGAGACACGA+GGG + chr6_1:85896724-85896743 None:intergenic 40.0%
! AAAGAGCTATTTGAGACACG+AGG + chr6_1:85896725-85896744 None:intergenic 40.0%
GGACCATGAAAGTGAAACTT+GGG + chr6_1:85896755-85896774 None:intergenic 40.0%
TGGACCATGAAAGTGAAACT+TGG + chr6_1:85896756-85896775 None:intergenic 40.0%
TCTTGTTCCACAATGCTTCA+AGG - chr6_1:85896779-85896798 Msa0896180:CDS 40.0%
!! AGATGTACCTTGAAGCATTG+TGG + chr6_1:85896789-85896808 None:intergenic 40.0%
CATGGACCAAAGTTATTCAC+AGG - chr6_1:85897025-85897044 Msa0896180:intron 40.0%
!! GATCATTTTTCGCAACATGC+AGG + chr6_1:85897315-85897334 None:intergenic 40.0%
TTATGTTACAAGCCACCCTT+TGG + chr6_1:85897731-85897750 None:intergenic 40.0%
! CAGTTCATTTCTTTTCGGTG+TGG + chr6_1:85898093-85898112 None:intergenic 40.0%
CTTGGATACTCATTCATGAG+AGG + chr6_1:85898244-85898263 None:intergenic 40.0%
CCAAGCTAACACAAAGACTT+CGG - chr6_1:85898259-85898278 Msa0896180:intron 40.0%
GACACTAAGTAGGTATGAGT+TGG + chr6_1:85898645-85898664 None:intergenic 40.0%
GCTCAACTCATACAAATGGT+TGG + chr6_1:85898949-85898968 None:intergenic 40.0%
! GAATATATGGTGGGGGAAGA+TGG + chr6_1:85894107-85894126 None:intergenic 45.0%
GGGAAGAGAATATATGGTGG+GGG + chr6_1:85894114-85894133 None:intergenic 45.0%
CTAAGCTTCTCATCCTCAGA+TGG + chr6_1:85894445-85894464 None:intergenic 45.0%
CATCTGAGGATGAGAAGCTT+AGG - chr6_1:85894443-85894462 Msa0896180:CDS 45.0%
GCTATGGCGTTCCAATTATG+AGG + chr6_1:85894490-85894509 None:intergenic 45.0%
! TCCTCGGAGATTTTCAGCTA+TGG + chr6_1:85894506-85894525 None:intergenic 45.0%
GAAAATCTCCGAGGAAGATC+AGG - chr6_1:85894511-85894530 Msa0896180:intron 45.0%
! CCCCGCTCATTTGCTTTATT+AGG - chr6_1:85894985-85895004 Msa0896180:intron 45.0%
! TTATTTACCCGGTTTTGCCC+GGG + chr6_1:85895767-85895786 None:intergenic 45.0%
AATTGTGTGCATGGGTGTAG+GGG + chr6_1:85895981-85896000 None:intergenic 45.0%
CAAATTGTGTGCATGGGTGT+AGG + chr6_1:85895983-85896002 None:intergenic 45.0%
! TAATTTGGTGGTAGGGATGG+AGG + chr6_1:85896285-85896304 None:intergenic 45.0%
TCTTCTTCTTCCTCCGTGAA+TGG + chr6_1:85896446-85896465 None:intergenic 45.0%
TACAGCATTATCAGTCCGTC+CGG + chr6_1:85896531-85896550 None:intergenic 45.0%
GCTGACCCTGTGAATAACTT+TGG + chr6_1:85897034-85897053 None:intergenic 45.0%
!! TTGGCTTGTTGTAGCTAGCT+TGG + chr6_1:85897246-85897265 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr6_1:85897716-85897735 Msa0896180:intron 45.0%
!!! ATTTTAGGACGGAAGGACTG+AGG - chr6_1:85897975-85897994 Msa0896180:intron 45.0%
!!! TTTTAGGACGGAAGGACTGA+GGG - chr6_1:85897976-85897995 Msa0896180:intron 45.0%
AGTTCGTGAATTGTCGGTCA+CGG - chr6_1:85898157-85898176 Msa0896180:intron 45.0%
TTCTAAACAGCCCTAAGTGG+TGG - chr6_1:85898214-85898233 Msa0896180:intron 45.0%
CCGAAGTCTTTGTGTTAGCT+TGG + chr6_1:85898262-85898281 None:intergenic 45.0%
AAGACTTCGGATTGTACCCA+TGG - chr6_1:85898272-85898291 Msa0896180:intron 45.0%
AGACTTCGGATTGTACCCAT+GGG - chr6_1:85898273-85898292 Msa0896180:intron 45.0%
TCCATCAAGCATAAACCGCT+AGG + chr6_1:85898429-85898448 None:intergenic 45.0%
GAGAGAGAGAGACACTAAGT+AGG + chr6_1:85898655-85898674 None:intergenic 45.0%
!!! TTTTTTATTTGAAAAATATT+TGG - chr6_1:85894858-85894877 Msa0896180:intron 5.0%
!!! TTTTTATTTGAAAAATATTT+GGG - chr6_1:85894859-85894878 Msa0896180:intron 5.0%
!!! GAAAATTTTAAATAATTATT+TGG - chr6_1:85895477-85895496 Msa0896180:intron 5.0%
!!! ATTTTAATCAATATTATATT+TGG - chr6_1:85895506-85895525 Msa0896180:intron 5.0%
!!! TTTTAATCAATATTATATTT+GGG - chr6_1:85895507-85895526 Msa0896180:intron 5.0%
!! ATCAATTAAAAAAAAAAAAT+TGG + chr6_1:85895814-85895833 None:intergenic 5.0%
CATCCTCAGATGGTCTCCAA+TGG + chr6_1:85894435-85894454 None:intergenic 50.0%
GGATGAGAAGCTTAGGGAGT+TGG - chr6_1:85894450-85894469 Msa0896180:CDS 50.0%
TGAGAAGCTTAGGGAGTTGG+TGG - chr6_1:85894453-85894472 Msa0896180:CDS 50.0%
!! AGGGAGTTGGTGGAAAGCTA+TGG - chr6_1:85894463-85894482 Msa0896180:intron 50.0%
GCCATAGCTGAAAATCTCCG+AGG - chr6_1:85894502-85894521 Msa0896180:intron 50.0%
TCTTTACCCATCCATGACCC+TGG - chr6_1:85895368-85895387 Msa0896180:intron 50.0%
AGCTCAGGATATGCTCACCA+GGG + chr6_1:85895388-85895407 None:intergenic 50.0%
ATATGCAACCCGGGCAAAAC+CGG - chr6_1:85895756-85895775 Msa0896180:intron 50.0%
GTCATTGCAAGACACTTCCC+CGG - chr6_1:85896509-85896528 Msa0896180:CDS 50.0%
ACAGCATTATCAGTCCGTCC+GGG + chr6_1:85896530-85896549 None:intergenic 50.0%
!! ATTGGCATGTGATGATGGCG+AGG - chr6_1:85896558-85896577 Msa0896180:CDS 50.0%
! TGTTGTAGCTAGCTTGGTCG+TGG + chr6_1:85897240-85897259 None:intergenic 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr6_1:85897728-85897747 None:intergenic 50.0%
! GAGAGGTTAGCCACCACTTA+GGG + chr6_1:85898227-85898246 None:intergenic 50.0%
! TGAGAGGTTAGCCACCACTT+AGG + chr6_1:85898228-85898247 None:intergenic 50.0%
CTAACAGTGGATCCACCCAT+GGG + chr6_1:85898291-85898310 None:intergenic 50.0%
ATCCACTGTTAGGCATGGTG+TGG - chr6_1:85898299-85898318 Msa0896180:intron 50.0%
AGGTTTCTCTCTTGGCCTAG+CGG - chr6_1:85898411-85898430 Msa0896180:intron 50.0%
GCCTAGCGGTTTATGCTTGA+TGG - chr6_1:85898425-85898444 Msa0896180:intron 50.0%
GCAGCTATGTTGGCAACTTC+CGG + chr6_1:85898910-85898929 None:intergenic 50.0%
AGGCCATTGGAGACCATCTG+AGG - chr6_1:85894429-85894448 Msa0896180:CDS 55.0%
TGCTCACCAGGGTCATGGAT+GGG + chr6_1:85895377-85895396 None:intergenic 55.0%
ATGCTCACCAGGGTCATGGA+TGG + chr6_1:85895378-85895397 None:intergenic 55.0%
GGATATGCTCACCAGGGTCA+TGG + chr6_1:85895382-85895401 None:intergenic 55.0%
GAGCTCAGGATATGCTCACC+AGG + chr6_1:85895389-85895408 None:intergenic 55.0%
TATGCAACCCGGGCAAAACC+GGG - chr6_1:85895757-85895776 Msa0896180:intron 55.0%
TTGCAAGACACTTCCCCGGA+CGG - chr6_1:85896513-85896532 Msa0896180:CDS 55.0%
CAGCATTATCAGTCCGTCCG+GGG + chr6_1:85896529-85896548 None:intergenic 55.0%
TGGCGAGGATTCGTCGAGAA+AGG - chr6_1:85896573-85896592 Msa0896180:CDS 55.0%
CTTCGGATTGTACCCATGGG+TGG - chr6_1:85898276-85898295 Msa0896180:intron 55.0%
CCTAACAGTGGATCCACCCA+TGG + chr6_1:85898292-85898311 None:intergenic 55.0%
CCATGGGTGGATCCACTGTT+AGG - chr6_1:85898289-85898308 Msa0896180:intron 55.0%
GGTGGATCCACTGTTAGGCA+TGG - chr6_1:85898294-85898313 Msa0896180:intron 55.0%
TGCCACACCATGCCTAACAG+TGG + chr6_1:85898304-85898323 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 85894094 85899132 85894094 ID=Msa0896180;Name=Msa0896180
chr6_1 mRNA 85894094 85899132 85894094 ID=Msa0896180-mRNA-1;Parent=Msa0896180;Name=Msa0896180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=324|1|1|1|1|1|3|191|240
chr6_1 exon 85894094 85894478 85894094 ID=Msa0896180-mRNA-1:exon:14476;Parent=Msa0896180-mRNA-1
chr6_1 exon 85896426 85896839 85896426 ID=Msa0896180-mRNA-1:exon:14475;Parent=Msa0896180-mRNA-1
chr6_1 exon 85898694 85899132 85898694 ID=Msa0896180-mRNA-1:exon:14474;Parent=Msa0896180-mRNA-1
chr6_1 five_prime_UTR 85898809 85899132 85898809 ID=Msa0896180-mRNA-1:five_prime_utr;Parent=Msa0896180-mRNA-1
chr6_1 CDS 85898694 85898808 85898694 ID=Msa0896180-mRNA-1:cds;Parent=Msa0896180-mRNA-1
chr6_1 CDS 85896426 85896839 85896426 ID=Msa0896180-mRNA-1:cds;Parent=Msa0896180-mRNA-1
chr6_1 CDS 85894285 85894478 85894285 ID=Msa0896180-mRNA-1:cds;Parent=Msa0896180-mRNA-1
chr6_1 three_prime_UTR 85894094 85894284 85894094 ID=Msa0896180-mRNA-1:three_prime_utr;Parent=Msa0896180-mRNA-1
Gene Sequence

>Msa0896180

ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGAGAAGCTTAGGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTCCGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGATCCAAGAATAAACAGAAATCCATTCACGGAGGAAGAAGAAGAGCGTCTTATAACTTCTCATCGAATTCATGGTAATAGATGGGCGGTCATTGCAAGACACTTCCCCGGACGGACTGATAATGCTGTAAAGAATCATTGGCATGTGATGATGGCGAGGATTCGTCGAGAAAGGTATAAGATCTATGCAAAAGGTCCTCTTGATCATCACACAATTTTCTCTCCAAATGATCATCAAACAAACTTTGAGAGAACAAATCTCCACTCTTTTGTTGAGAAGTATCATGAAAAGCATAATCACCCTCGTGTCTCAAATAGCTCTTTCCAATTTCCCAAGTTTCACTTTCATGGTCCAAATTCTTGTTCCACAATGCTTCAAGATAAAAGCCAATCAATTGAGTTCTATGATTTTCTTCAAGTAGATTCCAATAAAAGTGAAGTAACTGATAATGCTAGAAGAGATGATGAGGAAGTCAATCAAGATGTTATGGAACTGAAGAACAAGGAAAACAATGTTCAATTCATTGATTTTTTGTCTACCGGAAGTTGCCAACATAGCTGCAAAATTAAGTGA
Protein sequence

>Msa0896180

MCSRGHWRPSEDEKLRELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKIYAKGPLDHHTIFSPNDHQTNFERTNLHSFVEKYHEKHNHPRVSNSSFQFPKFHFHGPNSCSTMLQDKSQSIEFYDFLQVDSNKSEVTDNARRDDEEVNQDVMELKNKENNVQFIDFLSTGSCQHSCKIK*