Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0955410 | XP_003608382.2 | 63.127 | 339 | 81 | 9 | 272 | 573 | 141 | 472 | 1.06e-101 | 328 |
Msa0955410 | XP_003608382.2 | 68.470 | 536 | 125 | 9 | 1 | 514 | 1 | 514 | 0.0 | 694 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0955410 | sp|Q9S784|HA22C_ARATH | 40.805 | 174 | 85 | 7 | 7 | 168 | 14 | 181 | 5.45e-30 | 119 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0955410 | G7JV31 | 63.127 | 339 | 81 | 9 | 272 | 573 | 141 | 472 | 5.07e-102 | 328 |
Msa0955410 | G7JV31 | 68.470 | 536 | 125 | 9 | 1 | 514 | 1 | 514 | 0.0 | 694 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0863930 | Msa0955410 | 0.800279 | 1.552590e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0955410 | MtrunA17_Chr4g0049651 | 68.470 | 536 | 125 | 9 | 1 | 514 | 1 | 514 | 0.0 | 694 |
Msa0955410 | MtrunA17_Chr4g0049651 | 63.127 | 339 | 81 | 9 | 272 | 573 | 141 | 472 | 9.76e-106 | 328 |
Msa0955410 | MtrunA17_Chr4g0049671 | 54.153 | 602 | 195 | 16 | 1 | 570 | 1 | 553 | 0.0 | 541 |
Msa0955410 | MtrunA17_Chr4g0049701 | 67.692 | 260 | 77 | 3 | 20 | 274 | 17 | 274 | 2.06e-121 | 361 |
Msa0955410 | MtrunA17_Chr4g0049701 | 63.399 | 153 | 46 | 4 | 289 | 440 | 153 | 296 | 3.75e-50 | 176 |
Msa0955410 | MtrunA17_Chr4g0049701 | 66.667 | 75 | 24 | 1 | 449 | 522 | 205 | 279 | 9.13e-21 | 93.6 |
Msa0955410 | MtrunA17_Chr4g0049681 | 68.398 | 231 | 65 | 5 | 212 | 441 | 20 | 243 | 4.36e-95 | 291 |
Msa0955410 | MtrunA17_Chr4g0049681 | 48.636 | 220 | 79 | 5 | 342 | 530 | 11 | 227 | 6.23e-45 | 160 |
Msa0955410 | MtrunA17_Chr4g0049681 | 60.584 | 137 | 44 | 3 | 156 | 286 | 95 | 227 | 2.46e-41 | 150 |
Msa0955410 | MtrunA17_Chr4g0049681 | 65.556 | 90 | 31 | 0 | 441 | 530 | 3 | 92 | 5.94e-29 | 116 |
Msa0955410 | MtrunA17_Chr4g0060581 | 40.411 | 146 | 79 | 2 | 6 | 146 | 11 | 153 | 2.05e-31 | 120 |
Msa0955410 | MtrunA17_Chr5g0416561 | 43.165 | 139 | 69 | 3 | 18 | 146 | 77 | 215 | 1.55e-25 | 105 |
Msa0955410 | MtrunA17_Chr3g0097141 | 34.074 | 135 | 78 | 2 | 20 | 146 | 17 | 148 | 1.89e-22 | 94.4 |
Msa0955410 | MtrunA17_Chr4g0049691 | 47.788 | 113 | 15 | 3 | 1 | 69 | 1 | 113 | 3.10e-22 | 92.0 |
Msa0955410 | MtrunA17_Chr5g0443431 | 33.083 | 133 | 81 | 2 | 20 | 146 | 17 | 147 | 1.04e-20 | 89.4 |
Msa0955410 | MtrunA17_Chr8g0386221 | 35.000 | 100 | 62 | 1 | 1 | 100 | 1 | 97 | 4.15e-17 | 77.4 |
Msa0955410 | MtrunA17_Chr5g0427761 | 24.542 | 273 | 167 | 7 | 1 | 270 | 1 | 237 | 4.20e-17 | 84.0 |
Msa0955410 | MtrunA17_Chr3g0132031 | 37.000 | 100 | 60 | 1 | 1 | 100 | 1 | 97 | 1.35e-15 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0955410 | AT1G69700.1 | 40.805 | 174 | 85 | 7 | 7 | 168 | 14 | 181 | 5.54e-31 | 119 |
Msa0955410 | AT1G74520.1 | 41.958 | 143 | 75 | 3 | 17 | 154 | 19 | 158 | 1.25e-29 | 115 |
Msa0955410 | AT1G74520.2 | 41.958 | 143 | 75 | 3 | 17 | 154 | 19 | 158 | 1.25e-29 | 115 |
Msa0955410 | AT5G62490.1 | 35.374 | 147 | 87 | 3 | 11 | 154 | 13 | 154 | 6.69e-22 | 93.2 |
Msa0955410 | AT2G42820.1 | 36.111 | 108 | 65 | 1 | 6 | 113 | 3 | 106 | 4.84e-19 | 84.7 |
Msa0955410 | AT5G50720.1 | 36.111 | 108 | 62 | 1 | 7 | 107 | 4 | 111 | 2.73e-18 | 81.3 |
Msa0955410 | AT4G24960.1 | 34.000 | 100 | 63 | 1 | 1 | 100 | 1 | 97 | 1.84e-16 | 76.6 |
Msa0955410 | AT4G24960.3 | 33.766 | 77 | 51 | 0 | 24 | 100 | 2 | 78 | 1.50e-12 | 65.5 |
Find 136 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTGTGTTTCCTCCCTTTA+AGG | 0.046055 | 6_3:-59559521 | None:intergenic |
GACTTAATTTCCCACCTTAA+TGG | 0.204603 | 6_3:+59557914 | Msa0955410:CDS |
ACAGACTTTACATATTAATT+TGG | 0.211897 | 6_3:-59558774 | None:intergenic |
ACCTTGAATTCCCACCTTAA+AGG | 0.229261 | 6_3:+59559507 | Msa0955410:CDS |
CCCTGTGTTTCCTTCCATTA+AGG | 0.232179 | 6_3:-59557928 | None:intergenic |
CTTCTGTTTCTCCTCCTCTT+TGG | 0.235953 | 6_3:-59559610 | None:intergenic |
TGAATTCGGCTTGTAGGATT+TGG | 0.237722 | 6_3:+59555445 | Msa0955410:five_prime_UTR |
CGGTGCCCTTGTTCTCTGTT+TGG | 0.263867 | 6_3:-59558210 | None:intergenic |
GATTCCTTTGGTTTCTACTA+TGG | 0.266454 | 6_3:-59558519 | None:intergenic |
AGCTTGAATTTGGTAGTAAA+TGG | 0.271198 | 6_3:+59555685 | Msa0955410:exon |
AGAACCTTTCAGAACCCTTT+AGG | 0.273993 | 6_3:+59558741 | Msa0955410:CDS |
TTCACTCTCTGCTGTTCCTT+TGG | 0.274660 | 6_3:-59557786 | None:intergenic |
TCAGAGCTTGAGCTTGAATT+TGG | 0.277480 | 6_3:+59555675 | Msa0955410:five_prime_UTR |
ACCTTGAATTCCCACATTAA+TGG | 0.284729 | 6_3:+59558656 | Msa0955410:CDS |
TTCTTCATGGTTTCTCATAC+AGG | 0.292413 | 6_3:+59555709 | Msa0955410:CDS |
CCCTTTAAGGTGGGAATTCA+AGG | 0.294789 | 6_3:-59559508 | None:intergenic |
GGCCTTACTTGCTTGGTTGC+AGG | 0.296529 | 6_3:-59557432 | None:intergenic |
ATCCTTACTTGCTTGGTTGC+AGG | 0.300313 | 6_3:-59558265 | None:intergenic |
GAATTCGGCTTGTAGGATTT+GGG | 0.303627 | 6_3:+59555446 | Msa0955410:five_prime_UTR |
GAAAGAGCTGGTGGAGAAGT+TGG | 0.315787 | 6_3:+59557806 | Msa0955410:CDS |
CCTTGAATTCCCACATTAAT+GGG | 0.319670 | 6_3:+59558657 | Msa0955410:CDS |
CGATGATAAAGAAATGTTAA+AGG | 0.331489 | 6_3:+59557207 | Msa0955410:CDS |
CCTTGAATTCCCACCTTAAA+GGG | 0.333471 | 6_3:+59559508 | Msa0955410:CDS |
GCTGACTATTTGCGGTTTCA+TGG | 0.335387 | 6_3:-59556859 | None:intergenic |
TTCTAGGCCTCTTGTTGCTC+TGG | 0.337704 | 6_3:+59555872 | Msa0955410:intron |
TGTGGGAATTCAAGGTTATC+TGG | 0.341223 | 6_3:-59558649 | None:intergenic |
TCATTTGTCACTTCTGCATC+AGG | 0.350141 | 6_3:-59557172 | None:intergenic |
GCTAGCAATGAGTTTCTCTA+AGG | 0.350536 | 6_3:-59556976 | None:intergenic |
CTAAGCTAATGATAATCTTC+TGG | 0.358270 | 6_3:+59556781 | Msa0955410:CDS |
GGTAGTAAATGGCTTCTTCA+TGG | 0.362420 | 6_3:+59555696 | Msa0955410:exon |
CCCATTAATGTGGGAATTCA+AGG | 0.362628 | 6_3:-59558657 | None:intergenic |
CTAAGGATTTGATCTCATAT+TGG | 0.368288 | 6_3:+59556068 | Msa0955410:CDS |
GTCACTGCCATCGATTCCTT+TGG | 0.369658 | 6_3:-59558531 | None:intergenic |
ATATTCAAAGAGGTAAATTA+AGG | 0.374191 | 6_3:-59556101 | None:intergenic |
TTGGAATTAATCAACCTAAA+GGG | 0.375665 | 6_3:-59558755 | None:intergenic |
CCTTTGGTTTCCACTGTGAC+AGG | 0.391417 | 6_3:-59557770 | None:intergenic |
AAATAATAAAGTAGTTTAGT+TGG | 0.392113 | 6_3:-59555594 | None:intergenic |
GGAAGGAAACACAGGGTTGC+TGG | 0.399734 | 6_3:+59557935 | Msa0955410:CDS |
GAAAGGTTCTTCTGCGGAGC+AGG | 0.422036 | 6_3:-59558728 | None:intergenic |
AACAGTAGTGATGGATGATA+AGG | 0.432339 | 6_3:+59559701 | Msa0955410:CDS |
TTTGGAATTAATCAACCTAA+AGG | 0.440188 | 6_3:-59558756 | None:intergenic |
TGAATGAGGCCTTACTTGCT+TGG | 0.443918 | 6_3:-59557439 | None:intergenic |
TGAATGAATCCTTACTTGCT+TGG | 0.445111 | 6_3:-59558272 | None:intergenic |
TGGCTCATCATACCGGACTT+TGG | 0.448937 | 6_3:+59556801 | Msa0955410:CDS |
AATAAAGTAGTTTAGTTGGT+AGG | 0.449509 | 6_3:-59555590 | None:intergenic |
TGACTCATATGCTGAAACTA+AGG | 0.450349 | 6_3:+59556051 | Msa0955410:CDS |
ATGTTCACCTTCTGCGAAGC+AGG | 0.458818 | 6_3:-59559579 | None:intergenic |
CATACCATGCAAAATGATGA+AGG | 0.459168 | 6_3:-59555742 | None:intergenic |
GTGGACTTGTGCTTTATGTT+TGG | 0.459600 | 6_3:+59558613 | Msa0955410:CDS |
GGAGCTAATATTCTTAAGAA+AGG | 0.463915 | 6_3:+59559669 | Msa0955410:CDS |
GTCAGTTTCAATTGCTTGTA+CGG | 0.466858 | 6_3:-59556032 | None:intergenic |
TATTCTTAAGAAAGGATTGA+AGG | 0.469642 | 6_3:+59559677 | Msa0955410:CDS |
AGGGTCTTTGTGCAGACAAA+TGG | 0.469962 | 6_3:+59557345 | Msa0955410:intron |
GAGAGATATATGAAAGAGAA+TGG | 0.473137 | 6_3:+59556945 | Msa0955410:CDS |
GAACAAGGGCACCGAGGATG+TGG | 0.473925 | 6_3:+59558219 | Msa0955410:CDS |
AAAGAATTTACCATAGAAGA+AGG | 0.474141 | 6_3:-59556135 | None:intergenic |
GTGGACTTGTGCTATATGTT+TGG | 0.475777 | 6_3:+59557871 | Msa0955410:CDS |
AATGGAAAAGGCAAAGGAAA+AGG | 0.477497 | 6_3:-59555653 | None:intergenic |
ACCTTAAAGGGAGGAAACAC+AGG | 0.478853 | 6_3:+59559520 | Msa0955410:CDS |
ATTCAAGCTCAAGCTCTGAA+TGG | 0.481661 | 6_3:-59555671 | None:intergenic |
ACAGCAAAGAGTGACAAATC+TGG | 0.484031 | 6_3:+59559396 | Msa0955410:CDS |
TGAAACCGCAAATAGTCAGC+TGG | 0.488233 | 6_3:+59556862 | Msa0955410:CDS |
GTGTTTCCTCCCTTTAAGGT+GGG | 0.490716 | 6_3:-59559517 | None:intergenic |
GCTCAAGCTCTGAATGGAAA+AGG | 0.492643 | 6_3:-59555665 | None:intergenic |
TGTGTTTCCTCCCATTAATG+TGG | 0.493651 | 6_3:-59558667 | None:intergenic |
TAAGAAGCTCGTCCAAAGTC+CGG | 0.504580 | 6_3:-59556813 | None:intergenic |
ACAGTAGTGATGGATGATAA+GGG | 0.505518 | 6_3:+59559702 | Msa0955410:CDS |
TGTGTTTCCTCCCTTTAAGG+TGG | 0.506534 | 6_3:-59559518 | None:intergenic |
ATCAATAGCCTCCACATCCT+CGG | 0.513504 | 6_3:-59558230 | None:intergenic |
ATTAGCTCCACTCTTAACAT+TGG | 0.515615 | 6_3:-59559655 | None:intergenic |
CTTTAACATTTCTTTATCAT+CGG | 0.517051 | 6_3:-59557206 | None:intergenic |
ATTCTTAAGAAAGGATTGAA+GGG | 0.518639 | 6_3:+59559678 | Msa0955410:CDS |
TTCAATTCCAATGTTAAGAG+TGG | 0.520475 | 6_3:+59559648 | Msa0955410:CDS |
AATCTTCTGGCTCATCATAC+CGG | 0.523416 | 6_3:+59556794 | Msa0955410:CDS |
AGAAGGAAGTGCAGAAAGAG+TGG | 0.523749 | 6_3:+59558594 | Msa0955410:CDS |
GACACGGAGCAAAATGTCAT+TGG | 0.524996 | 6_3:-59555535 | None:intergenic |
ATTGAAGGGAACAGTAGTGA+TGG | 0.528979 | 6_3:+59559692 | Msa0955410:CDS |
AATTCGGCTTGTAGGATTTG+GGG | 0.529316 | 6_3:+59555447 | Msa0955410:five_prime_UTR |
GAAACCGCAAATAGTCAGCT+GGG | 0.529318 | 6_3:+59556863 | Msa0955410:CDS |
TCCTCGGAGTTCTACACAGA+AGG | 0.530592 | 6_3:+59557835 | Msa0955410:CDS |
TGTGTTTCCTTCCATTAAGG+TGG | 0.531895 | 6_3:-59557925 | None:intergenic |
AGAAGGGAGTGCAGAGAGAG+TGG | 0.533062 | 6_3:+59557852 | Msa0955410:CDS |
TTGACATCAGGTTTCAACTC+TGG | 0.534511 | 6_3:+59556751 | Msa0955410:intron |
TAAATAGCTTCTGGAAGAAG+TGG | 0.534630 | 6_3:+59556889 | Msa0955410:CDS |
ACCTACCCAGCAGAAGCAAA+AGG | 0.535322 | 6_3:+59557982 | Msa0955410:CDS |
GTGTTTCCTCCCATTAATGT+GGG | 0.538572 | 6_3:-59558666 | None:intergenic |
GTTGGTAGGTTGCAAGTGGG+AGG | 0.540862 | 6_3:-59555576 | None:intergenic |
TAATTTCCCACCTTAATGGA+AGG | 0.543554 | 6_3:+59557918 | Msa0955410:CDS |
AGAAGGAAGTGCAGAAAGAG+TGG | 0.545798 | 6_3:+59559445 | Msa0955410:CDS |
TTTAGTTGGTAGGTTGCAAG+TGG | 0.547642 | 6_3:-59555580 | None:intergenic |
ATTATCATTAGCTTAGTGTA+CGG | 0.553564 | 6_3:-59556774 | None:intergenic |
TCTTAAGAGTTCTACACAGA+AGG | 0.554349 | 6_3:+59559428 | Msa0955410:CDS |
GTGTTTCCTTCCATTAAGGT+GGG | 0.556051 | 6_3:-59557924 | None:intergenic |
GAGTTCTACCGCTACAGAGA+AGG | 0.557049 | 6_3:+59558577 | Msa0955410:CDS |
ATCGATGGCAGTGACACAGC+TGG | 0.560659 | 6_3:+59558539 | Msa0955410:CDS |
AAGACTCCAAACAGAGAACA+AGG | 0.564033 | 6_3:+59558204 | Msa0955410:CDS |
GTGGACTTGTGCTTTGTGCT+CGG | 0.565292 | 6_3:+59559464 | Msa0955410:CDS |
ACCTTAATGGAAGGAAACAC+AGG | 0.566703 | 6_3:+59557927 | Msa0955410:CDS |
TTGTGCAGACAAATGGAGAA+AGG | 0.568069 | 6_3:+59557352 | Msa0955410:intron |
AGAGAAACTCATTGCTAGCA+AGG | 0.570547 | 6_3:+59556980 | Msa0955410:CDS |
GAAGCAACCTGCTTCGCAGA+AGG | 0.574291 | 6_3:+59559572 | Msa0955410:CDS |
GCAGAGAGTGAAAGAGCTGG+TGG | 0.576755 | 6_3:+59557797 | Msa0955410:CDS |
CTGCACTTCCTTCTCTGTAG+CGG | 0.591044 | 6_3:-59558585 | None:intergenic |
GTAGAAACCAAAGGAATCGA+TGG | 0.600338 | 6_3:+59558524 | Msa0955410:CDS |
CAAGGGCACCGAGGATGTGG+AGG | 0.603207 | 6_3:+59558222 | Msa0955410:CDS |
GAGAAGTTGGAGAAGTTCCT+CGG | 0.603517 | 6_3:+59557819 | Msa0955410:CDS |
TGGGTTGATTCCTGTCACAG+TGG | 0.604211 | 6_3:+59557760 | Msa0955410:CDS |
ACAGCAGAGAGTGAAAGAGC+TGG | 0.604386 | 6_3:+59557794 | Msa0955410:CDS |
TCAACCTAAAGGGTTCTGAA+AGG | 0.610088 | 6_3:-59558745 | None:intergenic |
GATGGCAGTGACACAGCTGG+TGG | 0.610562 | 6_3:+59558542 | Msa0955410:CDS |
CAGTGACACAGCTGGTGGAG+AGG | 0.620558 | 6_3:+59558547 | Msa0955410:CDS |
TGATAAAAGCATATTCAAAG+AGG | 0.621411 | 6_3:-59556111 | None:intergenic |
TTAGTTGGTAGGTTGCAAGT+GGG | 0.625200 | 6_3:-59555579 | None:intergenic |
GCTCTGAATGGAAAAGGCAA+AGG | 0.636512 | 6_3:-59555659 | None:intergenic |
TGAATTCCCACATTAATGGG+AGG | 0.637945 | 6_3:+59558660 | Msa0955410:CDS |
CCTCGGAGTTCTACACAGAA+GGG | 0.638306 | 6_3:+59557836 | Msa0955410:CDS |
AAACCGCAAATAGTCAGCTG+GGG | 0.642341 | 6_3:+59556864 | Msa0955410:CDS |
TATTGTAGAACACAATGTGT+AGG | 0.642645 | 6_3:+59557149 | Msa0955410:intron |
TGAATTCCCACCTTAAAGGG+AGG | 0.644369 | 6_3:+59559511 | Msa0955410:CDS |
CATCTATCAGTCCAAAGAGG+AGG | 0.649279 | 6_3:+59559599 | Msa0955410:CDS |
GGTTCTGAAAGGTTCTTCTG+CGG | 0.657548 | 6_3:-59558734 | None:intergenic |
TGTTCCTTTCGTTTCCACTG+TGG | 0.658741 | 6_3:-59559376 | None:intergenic |
TCAGCCACAGTGGAAACGAA+AGG | 0.659859 | 6_3:+59559372 | Msa0955410:CDS |
AAATGCATCATCAGCCACAG+TGG | 0.664078 | 6_3:+59559362 | Msa0955410:CDS |
CCTGTCACAGTGGAAACCAA+AGG | 0.667906 | 6_3:+59557770 | Msa0955410:CDS |
GGATACACCAGAGCAACAAG+AGG | 0.670998 | 6_3:-59555879 | None:intergenic |
TCAACCATAGTAGAAACCAA+AGG | 0.674077 | 6_3:+59558515 | Msa0955410:CDS |
CCTTAATGGAAGGAAACACA+GGG | 0.683958 | 6_3:+59557928 | Msa0955410:CDS |
AACCGCAAATAGTCAGCTGG+GGG | 0.687491 | 6_3:+59556865 | Msa0955410:CDS |
CCTTAAAGGGAGGAAACACA+GGG | 0.688692 | 6_3:+59559521 | Msa0955410:CDS |
TCTGTAGCGGTAGAACTCTG+AGG | 0.692705 | 6_3:-59558572 | None:intergenic |
GAACATCTATCAGTCCAAAG+AGG | 0.699297 | 6_3:+59559596 | Msa0955410:CDS |
AGACTCCAAACAGAGAACAA+GGG | 0.699952 | 6_3:+59558205 | Msa0955410:CDS |
AACAGAGAACAAGGGCACCG+AGG | 0.716455 | 6_3:+59558213 | Msa0955410:CDS |
CCCTTCTGTGTAGAACTCCG+AGG | 0.719311 | 6_3:-59557836 | None:intergenic |
GAAAATAAGATATACCGACA+CGG | 0.734851 | 6_3:-59555551 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAATAAAGTAGTTTAGT+TGG | - | chr6_3:59555597-59555616 | None:intergenic | 15.0% |
!!! | TAAATTTTTAGTAGAGATTA+AGG | + | chr6_3:59556699-59556718 | Msa0955410:intron | 15.0% |
!! | TTTATTCTTCCAATTAAATT+GGG | + | chr6_3:59557674-59557693 | Msa0955410:intron | 15.0% |
!! | TGACAAATAATTATAACAAA+AGG | + | chr6_3:59559026-59559045 | Msa0955410:intron | 15.0% |
!! | TGTCAAAACAATAATGTAAA+AGG | - | chr6_3:59555952-59555971 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTTTTGCGATTA+TGG | + | chr6_3:59555990-59556009 | Msa0955410:intron | 20.0% |
!! | ATATTCAAAGAGGTAAATTA+AGG | - | chr6_3:59556104-59556123 | None:intergenic | 20.0% |
!! | ATAATAGTGCATTTATGTAT+TGG | + | chr6_3:59556176-59556195 | Msa0955410:intron | 20.0% |
!! | TTTCATAAATGATCAATAGA+TGG | - | chr6_3:59556239-59556258 | None:intergenic | 20.0% |
!! | TAAGGTTCACTTATTAAAAT+TGG | + | chr6_3:59556282-59556301 | Msa0955410:intron | 20.0% |
!! | TTAGCAAGTAATAAATAAGT+AGG | - | chr6_3:59556550-59556569 | None:intergenic | 20.0% |
!! | CTTTAACATTTCTTTATCAT+CGG | - | chr6_3:59557209-59557228 | None:intergenic | 20.0% |
!!! | ACATTTTCAACATATATCTA+TGG | - | chr6_3:59557645-59557664 | None:intergenic | 20.0% |
!! | GTTTATTCTTCCAATTAAAT+TGG | + | chr6_3:59557673-59557692 | Msa0955410:intron | 20.0% |
!!! | TTGCAGGATATAATTTTTAT+TGG | + | chr6_3:59557740-59557759 | Msa0955410:intron | 20.0% |
!!! | TGCAGGATATAATTTTTATT+GGG | + | chr6_3:59557741-59557760 | Msa0955410:intron | 20.0% |
!!! | TTTTTTATTATCAGTAGCTA+TGG | - | chr6_3:59558032-59558051 | None:intergenic | 20.0% |
!! | TGATAATAAAAAAATACCCA+AGG | + | chr6_3:59558039-59558058 | Msa0955410:CDS | 20.0% |
!!! | TTTAAAATAGAAATCTTCCA+AGG | + | chr6_3:59558303-59558322 | Msa0955410:intron | 20.0% |
!!! | CTAAAATTTTAATTTGTCCT+TGG | - | chr6_3:59558323-59558342 | None:intergenic | 20.0% |
!! | ACAGACTTTACATATTAATT+TGG | - | chr6_3:59558777-59558796 | None:intergenic | 20.0% |
!! | AAAATGCTATCAAAACTAAT+AGG | - | chr6_3:59559188-59559207 | None:intergenic | 20.0% |
!! | TAGTAAGTCATATATGTAAT+TGG | - | chr6_3:59559247-59559266 | None:intergenic | 20.0% |
! | GTTAAATACATACTTCAAGT+AGG | - | chr6_3:59555501-59555520 | None:intergenic | 25.0% |
! | AATAAAGTAGTTTAGTTGGT+AGG | - | chr6_3:59555593-59555612 | None:intergenic | 25.0% |
! | AAGATGAAGAAAATAAAGGA+GGG | - | chr6_3:59555786-59555805 | None:intergenic | 25.0% |
! | AAAGATGAAGAAAATAAAGG+AGG | - | chr6_3:59555787-59555806 | None:intergenic | 25.0% |
! | GAGAAAGATGAAGAAAATAA+AGG | - | chr6_3:59555790-59555809 | None:intergenic | 25.0% |
! | AAGAGAAGGAAAATAAAGAA+GGG | - | chr6_3:59555852-59555871 | None:intergenic | 25.0% |
! | AAAGAGAAGGAAAATAAAGA+AGG | - | chr6_3:59555853-59555872 | None:intergenic | 25.0% |
!! | TTATTTTCCTTCTCTTTTCT+AGG | + | chr6_3:59555856-59555875 | Msa0955410:intron | 25.0% |
!!! | TTTTTTGCGATTATGGTTTT+TGG | + | chr6_3:59555997-59556016 | Msa0955410:intron | 25.0% |
!! | TGATAAAAGCATATTCAAAG+AGG | - | chr6_3:59556114-59556133 | None:intergenic | 25.0% |
! | AAAGAATTTACCATAGAAGA+AGG | - | chr6_3:59556138-59556157 | None:intergenic | 25.0% |
! | TAAATGCACTATTATACTTG+TGG | - | chr6_3:59556171-59556190 | None:intergenic | 25.0% |
! | ATAAATGATCAATAGATGGA+GGG | - | chr6_3:59556235-59556254 | None:intergenic | 25.0% |
! | AAACATAAGTGAAAGAAGTA+AGG | + | chr6_3:59556264-59556283 | Msa0955410:intron | 25.0% |
! | GATTTACTCCATTTATCTAT+GGG | - | chr6_3:59556508-59556527 | None:intergenic | 25.0% |
! | AGATTTACTCCATTTATCTA+TGG | - | chr6_3:59556509-59556528 | None:intergenic | 25.0% |
! | ATGATTCATAGAAATATTGC+CGG | - | chr6_3:59556606-59556625 | None:intergenic | 25.0% |
!! | ATTATCATTAGCTTAGTGTA+CGG | - | chr6_3:59556777-59556796 | None:intergenic | 25.0% |
!! | TGACATTTTTATCCTATGTT+GGG | - | chr6_3:59557051-59557070 | None:intergenic | 25.0% |
!! | TTGACATTTTTATCCTATGT+TGG | - | chr6_3:59557052-59557071 | None:intergenic | 25.0% |
!! | ACAACTCTAGAAAAATTATG+TGG | + | chr6_3:59557078-59557097 | Msa0955410:intron | 25.0% |
!! | CAACTCTAGAAAAATTATGT+GGG | + | chr6_3:59557079-59557098 | Msa0955410:intron | 25.0% |
! | CGATGATAAAGAAATGTTAA+AGG | + | chr6_3:59557207-59557226 | Msa0955410:CDS | 25.0% |
! | TTTGAGTGAATATATGAATG+AGG | - | chr6_3:59557456-59557475 | None:intergenic | 25.0% |
!!! | CTAAAACTTTAATTTGTCCT+TGG | - | chr6_3:59557490-59557509 | None:intergenic | 25.0% |
! | TTATTACTCATGCATACAAA+GGG | - | chr6_3:59557619-59557638 | None:intergenic | 25.0% |
! | ATTATTACTCATGCATACAA+AGG | - | chr6_3:59557620-59557639 | None:intergenic | 25.0% |
! | TACAAACAACCCAATTTAAT+TGG | - | chr6_3:59557686-59557705 | None:intergenic | 25.0% |
!!! | TGAATTTGTTGAATTGTTGT+TGG | + | chr6_3:59558447-59558466 | Msa0955410:intron | 25.0% |
! | TTGGAATTAATCAACCTAAA+GGG | - | chr6_3:59558758-59558777 | None:intergenic | 25.0% |
!! | TTTGGAATTAATCAACCTAA+AGG | - | chr6_3:59558759-59558778 | None:intergenic | 25.0% |
!! | ACTTGTCTAAAATTCAAAGT+TGG | + | chr6_3:59558852-59558871 | Msa0955410:intron | 25.0% |
! | ATGAAAGTTGAAAAGCAAAT+TGG | + | chr6_3:59558909-59558928 | Msa0955410:intron | 25.0% |
! | TGAAAGTTGAAAAGCAAATT+GGG | + | chr6_3:59558910-59558929 | Msa0955410:intron | 25.0% |
!! | TTTAAGAATCAGCAATGTTT+TGG | - | chr6_3:59558967-59558986 | None:intergenic | 25.0% |
!!! | AAACATTGCTGATTCTTAAA+TGG | + | chr6_3:59558967-59558986 | Msa0955410:intron | 25.0% |
!! | TTAGTTTGAGTATTGCTATT+TGG | + | chr6_3:59559001-59559020 | Msa0955410:intron | 25.0% |
! | TATCAAAACTAATAGGAGAA+TGG | - | chr6_3:59559181-59559200 | None:intergenic | 25.0% |
! | CAATATATACACACAAATAC+AGG | - | chr6_3:59559285-59559304 | None:intergenic | 25.0% |
! | TATTCTTAAGAAAGGATTGA+AGG | + | chr6_3:59559677-59559696 | Msa0955410:CDS | 25.0% |
! | ATTCTTAAGAAAGGATTGAA+GGG | + | chr6_3:59559678-59559697 | Msa0955410:CDS | 25.0% |
GAAAATAAGATATACCGACA+CGG | - | chr6_3:59555554-59555573 | None:intergenic | 30.0% | |
! | AGCTTGAATTTGGTAGTAAA+TGG | + | chr6_3:59555685-59555704 | Msa0955410:exon | 30.0% |
CTAAGGATTTGATCTCATAT+TGG | + | chr6_3:59556068-59556087 | Msa0955410:CDS | 30.0% | |
! | CTTTTATCAACCTTCTTCTA+TGG | + | chr6_3:59556125-59556144 | Msa0955410:CDS | 30.0% |
ATAGTGCATTTATGTATTGG+TGG | + | chr6_3:59556179-59556198 | Msa0955410:intron | 30.0% | |
CATAAATGATCAATAGATGG+AGG | - | chr6_3:59556236-59556255 | None:intergenic | 30.0% | |
GGTTCACTTATTAAAATTGG+CGG | + | chr6_3:59556285-59556304 | Msa0955410:intron | 30.0% | |
TCTCGTAAATGGATAATTAC+CGG | + | chr6_3:59556335-59556354 | Msa0955410:intron | 30.0% | |
! | TTTATTACTTGCTAAAGCCA+CGG | + | chr6_3:59556555-59556574 | Msa0955410:intron | 30.0% |
!! | TGTTATTTCGCCAAATTAAC+CGG | + | chr6_3:59556584-59556603 | Msa0955410:intron | 30.0% |
! | AGAAATATTGCCGGTTAATT+TGG | - | chr6_3:59556597-59556616 | None:intergenic | 30.0% |
TCAGAGTAAAAAAACGAACT+TGG | - | chr6_3:59556629-59556648 | None:intergenic | 30.0% | |
GATTAAGATCAAGTTCAATC+AGG | - | chr6_3:59556661-59556680 | None:intergenic | 30.0% | |
AAGTTCAATCAGGTACTAAA+AGG | - | chr6_3:59556733-59556752 | None:intergenic | 30.0% | |
CTAAGCTAATGATAATCTTC+TGG | + | chr6_3:59556781-59556800 | Msa0955410:CDS | 30.0% | |
GAGAGATATATGAAAGAGAA+TGG | + | chr6_3:59556945-59556964 | Msa0955410:CDS | 30.0% | |
GCATTATGCTGCATAAAAAT+TGG | + | chr6_3:59557017-59557036 | Msa0955410:intron | 30.0% | |
TATTGTAGAACACAATGTGT+AGG | + | chr6_3:59557149-59557168 | Msa0955410:intron | 30.0% | |
! | TGATATCTTTTTGCTCTGTT+TGG | - | chr6_3:59557380-59557399 | None:intergenic | 30.0% |
ACAGAGCAAAAAGATATCAA+AGG | + | chr6_3:59557381-59557400 | Msa0955410:CDS | 30.0% | |
GCAAAAAGATATCAAAGGTT+TGG | + | chr6_3:59557386-59557405 | Msa0955410:CDS | 30.0% | |
!! | AAACTTTAATTTGTCCTTGG+AGG | - | chr6_3:59557487-59557506 | None:intergenic | 30.0% |
ACGTCATTTGTGAAATGTTT+AGG | + | chr6_3:59557527-59557546 | Msa0955410:intron | 30.0% | |
TTAGTCTCTATGCGTATATT+TGG | + | chr6_3:59557714-59557733 | Msa0955410:intron | 30.0% | |
TCACATCAAAACTTTACCTT+GGG | - | chr6_3:59558058-59558077 | None:intergenic | 30.0% | |
TTCACATCAAAACTTTACCT+TGG | - | chr6_3:59558059-59558078 | None:intergenic | 30.0% | |
! | AAAATTTTAGACCAGAGTTG+AGG | + | chr6_3:59558333-59558352 | Msa0955410:intron | 30.0% |
! | AGGTCATTTGTGAAAGTTTT+AGG | + | chr6_3:59558365-59558384 | Msa0955410:intron | 30.0% |
ATATGGCATCTCACATAAAT+CGG | + | chr6_3:59558822-59558841 | Msa0955410:intron | 30.0% | |
GAAAGTTGAAAAGCAAATTG+GGG | + | chr6_3:59558911-59558930 | Msa0955410:intron | 30.0% | |
! | CACTTCGTGTAAATGTTTTA+AGG | + | chr6_3:59559056-59559075 | Msa0955410:intron | 30.0% |
TTAATACAAACACGCAAGAT+TGG | - | chr6_3:59559130-59559149 | None:intergenic | 30.0% | |
!!! | ATCCTATTTTTACCATTTGC+AGG | + | chr6_3:59559305-59559324 | Msa0955410:intron | 30.0% |
ATCCTGCAAATGGTAAAAAT+AGG | - | chr6_3:59559310-59559329 | None:intergenic | 30.0% | |
!!! | TTTTGACTTGGTGCAATTTT+AGG | - | chr6_3:59559345-59559364 | None:intergenic | 30.0% |
TTCAATTCCAATGTTAAGAG+TGG | + | chr6_3:59559648-59559667 | Msa0955410:CDS | 30.0% | |
GGAGCTAATATTCTTAAGAA+AGG | + | chr6_3:59559669-59559688 | Msa0955410:CDS | 30.0% | |
AGAAGCAGAAAAAACAAGAG+AGG | + | chr6_3:59555473-59555492 | Msa0955410:five_prime_UTR | 35.0% | |
GAAGCAGAAAAAACAAGAGA+GGG | + | chr6_3:59555474-59555493 | Msa0955410:five_prime_UTR | 35.0% | |
ATGTATTTAACATGCGAACG+AGG | + | chr6_3:59555510-59555529 | Msa0955410:intron | 35.0% | |
TGTATTTAACATGCGAACGA+GGG | + | chr6_3:59555511-59555530 | Msa0955410:intron | 35.0% | |
AATGGAAAAGGCAAAGGAAA+AGG | - | chr6_3:59555656-59555675 | None:intergenic | 35.0% | |
TTCTTCATGGTTTCTCATAC+AGG | + | chr6_3:59555709-59555728 | Msa0955410:CDS | 35.0% | |
! | AATGCCTTCATCATTTTGCA+TGG | + | chr6_3:59555738-59555757 | Msa0955410:CDS | 35.0% |
CATACCATGCAAAATGATGA+AGG | - | chr6_3:59555745-59555764 | None:intergenic | 35.0% | |
TCCTATGTAAGTTCTTGATC+TGG | + | chr6_3:59555899-59555918 | Msa0955410:intron | 35.0% | |
GTCAGTTTCAATTGCTTGTA+CGG | - | chr6_3:59556035-59556054 | None:intergenic | 35.0% | |
TGACTCATATGCTGAAACTA+AGG | + | chr6_3:59556051-59556070 | Msa0955410:CDS | 35.0% | |
AAATGGATAATTACCGGAAG+AGG | + | chr6_3:59556341-59556360 | Msa0955410:intron | 35.0% | |
AATGGATAATTACCGGAAGA+GGG | + | chr6_3:59556342-59556361 | Msa0955410:intron | 35.0% | |
ATCATTTATCTACCCTCTTC+CGG | - | chr6_3:59556357-59556376 | None:intergenic | 35.0% | |
TGATAGCACTTGTGTAATTG+AGG | + | chr6_3:59556373-59556392 | Msa0955410:intron | 35.0% | |
! | AACTGATACGTGTCACATTT+TGG | - | chr6_3:59556425-59556444 | None:intergenic | 35.0% |
ATCAGTTGTCACATTGTAGT+CGG | + | chr6_3:59556438-59556457 | Msa0955410:intron | 35.0% | |
AAGTGCTACCCATAGATAAA+TGG | + | chr6_3:59556497-59556516 | Msa0955410:intron | 35.0% | |
! | TAAATAGCTTCTGGAAGAAG+TGG | + | chr6_3:59556889-59556908 | Msa0955410:CDS | 35.0% |
!! | GGGTGTTTTTACATCTACAT+CGG | + | chr6_3:59557099-59557118 | Msa0955410:intron | 35.0% |
TTGACTCATAGAAGAACTAG+TGG | - | chr6_3:59557278-59557297 | None:intergenic | 35.0% | |
TTCTACCTTTCTTAGTCTCA+TGG | + | chr6_3:59557298-59557317 | Msa0955410:intron | 35.0% | |
! | ATTTAGAGTACTAACGAGAG+AGG | + | chr6_3:59557325-59557344 | Msa0955410:intron | 35.0% |
! | TTTAGAGTACTAACGAGAGA+GGG | + | chr6_3:59557326-59557345 | Msa0955410:intron | 35.0% |
CTCAAAATAGAAATCCTCCA+AGG | + | chr6_3:59557470-59557489 | Msa0955410:intron | 35.0% | |
GACTTAATTTCCCACCTTAA+TGG | + | chr6_3:59557914-59557933 | Msa0955410:CDS | 35.0% | |
TAATTTCCCACCTTAATGGA+AGG | + | chr6_3:59557918-59557937 | Msa0955410:CDS | 35.0% | |
TGAATGAATCCTTACTTGCT+TGG | - | chr6_3:59558275-59558294 | None:intergenic | 35.0% | |
GTGTGTGTGTGTAAATTGTA+TGG | + | chr6_3:59558415-59558434 | Msa0955410:intron | 35.0% | |
GTGTGTAAATTGTATGGATG+TGG | + | chr6_3:59558421-59558440 | Msa0955410:intron | 35.0% | |
TCAACCATAGTAGAAACCAA+AGG | + | chr6_3:59558515-59558534 | Msa0955410:CDS | 35.0% | |
! | GATTCCTTTGGTTTCTACTA+TGG | - | chr6_3:59558522-59558541 | None:intergenic | 35.0% |
ACCTTGAATTCCCACATTAA+TGG | + | chr6_3:59558656-59558675 | Msa0955410:CDS | 35.0% | |
CCTTGAATTCCCACATTAAT+GGG | + | chr6_3:59558657-59558676 | Msa0955410:CDS | 35.0% | |
TAATGTTATGCTTCCAAGTG+AGG | + | chr6_3:59558796-59558815 | Msa0955410:intron | 35.0% | |
!! | AGTTTTGATAACCATAGCGT+AGG | + | chr6_3:59558876-59558895 | Msa0955410:intron | 35.0% |
!! | GTTTTGATAACCATAGCGTA+GGG | + | chr6_3:59558877-59558896 | Msa0955410:intron | 35.0% |
!!! | TGCTATTTTGCAGAAAACAC+AGG | + | chr6_3:59559098-59559117 | Msa0955410:intron | 35.0% |
TCTTAAGAGTTCTACACAGA+AGG | + | chr6_3:59559428-59559447 | Msa0955410:CDS | 35.0% | |
ATTAGCTCCACTCTTAACAT+TGG | - | chr6_3:59559658-59559677 | None:intergenic | 35.0% | |
!! | AACAGTAGTGATGGATGATA+AGG | + | chr6_3:59559701-59559720 | Msa0955410:CDS | 35.0% |
!! | ACAGTAGTGATGGATGATAA+GGG | + | chr6_3:59559702-59559721 | Msa0955410:CDS | 35.0% |
! | TGAATTCGGCTTGTAGGATT+TGG | + | chr6_3:59555445-59555464 | Msa0955410:five_prime_UTR | 40.0% |
! | GAATTCGGCTTGTAGGATTT+GGG | + | chr6_3:59555446-59555465 | Msa0955410:five_prime_UTR | 40.0% |
! | AATTCGGCTTGTAGGATTTG+GGG | + | chr6_3:59555447-59555466 | Msa0955410:five_prime_UTR | 40.0% |
! | AATGACATTTTGCTCCGTGT+CGG | + | chr6_3:59555537-59555556 | Msa0955410:five_prime_UTR | 40.0% |
!! | TTAGTTGGTAGGTTGCAAGT+GGG | - | chr6_3:59555582-59555601 | None:intergenic | 40.0% |
!! | TTTAGTTGGTAGGTTGCAAG+TGG | - | chr6_3:59555583-59555602 | None:intergenic | 40.0% |
!! | ATTCAAGCTCAAGCTCTGAA+TGG | - | chr6_3:59555674-59555693 | None:intergenic | 40.0% |
TCAGAGCTTGAGCTTGAATT+TGG | + | chr6_3:59555675-59555694 | Msa0955410:five_prime_UTR | 40.0% | |
GGTAGTAAATGGCTTCTTCA+TGG | + | chr6_3:59555696-59555715 | Msa0955410:exon | 40.0% | |
GCCAGATCAAGAACTTACAT+AGG | - | chr6_3:59555903-59555922 | None:intergenic | 40.0% | |
AAGTTCTTGATCTGGCTGTT+TGG | + | chr6_3:59555907-59555926 | Msa0955410:intron | 40.0% | |
!! | TGCGATTATGGTTTTTGGAC+AGG | + | chr6_3:59556002-59556021 | Msa0955410:intron | 40.0% |
!! | TTATGTATTGGTGGCGTGTT+TGG | + | chr6_3:59556188-59556207 | Msa0955410:intron | 40.0% |
GTGTCTATGTCTCTCGTAAA+TGG | + | chr6_3:59556324-59556343 | Msa0955410:intron | 40.0% | |
GTGCCAATGTCATGTGATAT+TGG | + | chr6_3:59556395-59556414 | Msa0955410:intron | 40.0% | |
TGGCCAATATCACATGACAT+TGG | - | chr6_3:59556401-59556420 | None:intergenic | 40.0% | |
!! | GATACGTGTCACATTTTGGT+TGG | - | chr6_3:59556421-59556440 | None:intergenic | 40.0% |
ACCTGATTGAACTTGACATC+AGG | + | chr6_3:59556739-59556758 | Msa0955410:intron | 40.0% | |
ACCTGATGTCAAGTTCAATC+AGG | - | chr6_3:59556743-59556762 | None:intergenic | 40.0% | |
TTGACATCAGGTTTCAACTC+TGG | + | chr6_3:59556751-59556770 | Msa0955410:intron | 40.0% | |
!! | AATCTTCTGGCTCATCATAC+CGG | + | chr6_3:59556794-59556813 | Msa0955410:CDS | 40.0% |
GCTAGCAATGAGTTTCTCTA+AGG | - | chr6_3:59556979-59556998 | None:intergenic | 40.0% | |
AGAGAAACTCATTGCTAGCA+AGG | + | chr6_3:59556980-59556999 | Msa0955410:CDS | 40.0% | |
TTGGAGTACAAACCCAACAT+AGG | + | chr6_3:59557036-59557055 | Msa0955410:intron | 40.0% | |
! | TCATTTGTCACTTCTGCATC+AGG | - | chr6_3:59557175-59557194 | None:intergenic | 40.0% |
TGTCACCATGAGACTAAGAA+AGG | - | chr6_3:59557306-59557325 | None:intergenic | 40.0% | |
TTGTGCAGACAAATGGAGAA+AGG | + | chr6_3:59557352-59557371 | Msa0955410:intron | 40.0% | |
TGCGTATATTTGGATGTTGC+AGG | + | chr6_3:59557724-59557743 | Msa0955410:intron | 40.0% | |
GTGGACTTGTGCTATATGTT+TGG | + | chr6_3:59557871-59557890 | Msa0955410:CDS | 40.0% | |
GTGTTTCCTTCCATTAAGGT+GGG | - | chr6_3:59557927-59557946 | None:intergenic | 40.0% | |
TGTGTTTCCTTCCATTAAGG+TGG | - | chr6_3:59557928-59557947 | None:intergenic | 40.0% | |
ACCTTAATGGAAGGAAACAC+AGG | + | chr6_3:59557927-59557946 | Msa0955410:CDS | 40.0% | |
CCTTAATGGAAGGAAACACA+GGG | + | chr6_3:59557928-59557947 | Msa0955410:CDS | 40.0% | |
CTCATACAAGAACTTGTAGC+AGG | - | chr6_3:59558106-59558125 | None:intergenic | 40.0% | |
GTACTCTAAATGTCACCATG+AGG | - | chr6_3:59557316-59557335 | None:intergenic | 40.0% | |
GAGCTTCTTGTGCAGAAAAA+TGG | + | chr6_3:59558178-59558197 | Msa0955410:intron | 40.0% | |
AAGACTCCAAACAGAGAACA+AGG | + | chr6_3:59558204-59558223 | Msa0955410:CDS | 40.0% | |
AGACTCCAAACAGAGAACAA+GGG | + | chr6_3:59558205-59558224 | Msa0955410:CDS | 40.0% | |
GTAGAAACCAAAGGAATCGA+TGG | + | chr6_3:59558524-59558543 | Msa0955410:CDS | 40.0% | |
GTGGACTTGTGCTTTATGTT+TGG | + | chr6_3:59558613-59558632 | Msa0955410:CDS | 40.0% | |
TGTGGGAATTCAAGGTTATC+TGG | - | chr6_3:59558652-59558671 | None:intergenic | 40.0% | |
CCCATTAATGTGGGAATTCA+AGG | - | chr6_3:59558660-59558679 | None:intergenic | 40.0% | |
TGAATTCCCACATTAATGGG+AGG | + | chr6_3:59558660-59558679 | Msa0955410:CDS | 40.0% | |
GTGTTTCCTCCCATTAATGT+GGG | - | chr6_3:59558669-59558688 | None:intergenic | 40.0% | |
TGTGTTTCCTCCCATTAATG+TGG | - | chr6_3:59558670-59558689 | None:intergenic | 40.0% | |
AGAACCTTTCAGAACCCTTT+AGG | + | chr6_3:59558741-59558760 | Msa0955410:CDS | 40.0% | |
!! | TCAACCTAAAGGGTTCTGAA+AGG | - | chr6_3:59558748-59558767 | None:intergenic | 40.0% |
TGACAGGAATATCCTGCAAA+TGG | - | chr6_3:59559320-59559339 | None:intergenic | 40.0% | |
!!! | GCTGATGATGCATTTTGACT+TGG | - | chr6_3:59559357-59559376 | None:intergenic | 40.0% |
ACAGCAAAGAGTGACAAATC+TGG | + | chr6_3:59559396-59559415 | Msa0955410:CDS | 40.0% | |
ACCTTGAATTCCCACCTTAA+AGG | + | chr6_3:59559507-59559526 | Msa0955410:CDS | 40.0% | |
CCTTGAATTCCCACCTTAAA+GGG | + | chr6_3:59559508-59559527 | Msa0955410:CDS | 40.0% | |
GAACATCTATCAGTCCAAAG+AGG | + | chr6_3:59559596-59559615 | Msa0955410:CDS | 40.0% | |
ATTGAAGGGAACAGTAGTGA+TGG | + | chr6_3:59559692-59559711 | Msa0955410:CDS | 40.0% | |
GACACGGAGCAAAATGTCAT+TGG | - | chr6_3:59555538-59555557 | None:intergenic | 45.0% | |
! | GCTCTGAATGGAAAAGGCAA+AGG | - | chr6_3:59555662-59555681 | None:intergenic | 45.0% |
!! | GCTCAAGCTCTGAATGGAAA+AGG | - | chr6_3:59555668-59555687 | None:intergenic | 45.0% |
CAAGAGGCCTAGAAAAGAGA+AGG | - | chr6_3:59555866-59555885 | None:intergenic | 45.0% | |
GTAGCACTTGTGAGACATTG+TGG | - | chr6_3:59556486-59556505 | None:intergenic | 45.0% | |
GCGAAATAACATTGTCACCG+TGG | - | chr6_3:59556575-59556594 | None:intergenic | 45.0% | |
TAAGAAGCTCGTCCAAAGTC+CGG | - | chr6_3:59556816-59556835 | None:intergenic | 45.0% | |
GCTGACTATTTGCGGTTTCA+TGG | - | chr6_3:59556862-59556881 | None:intergenic | 45.0% | |
TGAAACCGCAAATAGTCAGC+TGG | + | chr6_3:59556862-59556881 | Msa0955410:CDS | 45.0% | |
GAAACCGCAAATAGTCAGCT+GGG | + | chr6_3:59556863-59556882 | Msa0955410:CDS | 45.0% | |
AAACCGCAAATAGTCAGCTG+GGG | + | chr6_3:59556864-59556883 | Msa0955410:CDS | 45.0% | |
AGGGTCTTTGTGCAGACAAA+TGG | + | chr6_3:59557345-59557364 | Msa0955410:intron | 45.0% | |
TTCCTGCAACCAAGCAAGTA+AGG | + | chr6_3:59557430-59557449 | Msa0955410:intron | 45.0% | |
TGAATGAGGCCTTACTTGCT+TGG | - | chr6_3:59557442-59557461 | None:intergenic | 45.0% | |
TTCACTCTCTGCTGTTCCTT+TGG | - | chr6_3:59557789-59557808 | None:intergenic | 45.0% | |
GAGAAGTTGGAGAAGTTCCT+CGG | + | chr6_3:59557819-59557838 | Msa0955410:CDS | 45.0% | |
CCCTGTGTTTCCTTCCATTA+AGG | - | chr6_3:59557931-59557950 | None:intergenic | 45.0% | |
! | TGCATCCTTTTGCTTCTGCT+GGG | - | chr6_3:59557990-59558009 | None:intergenic | 45.0% |
CTAAATGTCACCATGAGGCT+GGG | - | chr6_3:59558144-59558163 | None:intergenic | 45.0% | |
TCTAAATGTCACCATGAGGC+TGG | - | chr6_3:59558145-59558164 | None:intergenic | 45.0% | |
ATCAATAGCCTCCACATCCT+CGG | - | chr6_3:59558233-59558252 | None:intergenic | 45.0% | |
TTCCTGCAACCAAGCAAGTA+AGG | + | chr6_3:59557430-59557449 | Msa0955410:intron | 45.0% | |
ATCCTTACTTGCTTGGTTGC+AGG | - | chr6_3:59558268-59558287 | None:intergenic | 45.0% | |
! | CTTTTAGCATGCCTCAACTC+TGG | - | chr6_3:59558347-59558366 | None:intergenic | 45.0% |
CAGAGTTGAGGCATGCTAAA+AGG | + | chr6_3:59558345-59558364 | Msa0955410:intron | 45.0% | |
! | AGAAGGAAGTGCAGAAAGAG+TGG | + | chr6_3:59558594-59558613 | Msa0955410:CDS | 45.0% |
!! | GGTTCTGAAAGGTTCTTCTG+CGG | - | chr6_3:59558737-59558756 | None:intergenic | 45.0% |
! | GCTTCCAAGTGAGGAGTATA+TGG | + | chr6_3:59558805-59558824 | Msa0955410:intron | 45.0% |
GATGCCATATACTCCTCACT+TGG | - | chr6_3:59558812-59558831 | None:intergenic | 45.0% | |
TGGCATCTCACATAAATCGG+TGG | + | chr6_3:59558825-59558844 | Msa0955410:intron | 45.0% | |
TGCAAAATGTCCCTACGCTA+TGG | - | chr6_3:59558890-59558909 | None:intergenic | 45.0% | |
CACACAAATACAGGACGTGT+GGG | - | chr6_3:59559276-59559295 | None:intergenic | 45.0% | |
ACACACAAATACAGGACGTG+TGG | - | chr6_3:59559277-59559296 | None:intergenic | 45.0% | |
!! | GGTGCAATTTTAGGTGTGAC+AGG | - | chr6_3:59559336-59559355 | None:intergenic | 45.0% |
AAATGCATCATCAGCCACAG+TGG | + | chr6_3:59559362-59559381 | Msa0955410:CDS | 45.0% | |
TGTTCCTTTCGTTTCCACTG+TGG | - | chr6_3:59559379-59559398 | None:intergenic | 45.0% | |
! | AGAAGGAAGTGCAGAAAGAG+TGG | + | chr6_3:59558594-59558613 | Msa0955410:CDS | 45.0% |
!! | CCCTTTAAGGTGGGAATTCA+AGG | - | chr6_3:59559511-59559530 | None:intergenic | 45.0% |
TGAATTCCCACCTTAAAGGG+AGG | + | chr6_3:59559511-59559530 | Msa0955410:CDS | 45.0% | |
!! | GTGTTTCCTCCCTTTAAGGT+GGG | - | chr6_3:59559520-59559539 | None:intergenic | 45.0% |
! | TGTGTTTCCTCCCTTTAAGG+TGG | - | chr6_3:59559521-59559540 | None:intergenic | 45.0% |
ACCTTAAAGGGAGGAAACAC+AGG | + | chr6_3:59559520-59559539 | Msa0955410:CDS | 45.0% | |
CCTTAAAGGGAGGAAACACA+GGG | + | chr6_3:59559521-59559540 | Msa0955410:CDS | 45.0% | |
CATCTATCAGTCCAAAGAGG+AGG | + | chr6_3:59559599-59559618 | Msa0955410:CDS | 45.0% | |
! | CTTCTGTTTCTCCTCCTCTT+TGG | - | chr6_3:59559613-59559632 | None:intergenic | 45.0% |
TTCTAGGCCTCTTGTTGCTC+TGG | + | chr6_3:59555872-59555891 | Msa0955410:intron | 50.0% | |
GGATACACCAGAGCAACAAG+AGG | - | chr6_3:59555882-59555901 | None:intergenic | 50.0% | |
TGTAGTCGGCCAATGTCACA+TGG | + | chr6_3:59556452-59556471 | Msa0955410:intron | 50.0% | |
GGCCAATGTCACATGGCATT+GGG | + | chr6_3:59556459-59556478 | Msa0955410:intron | 50.0% | |
GTCCCAATGCCATGTGACAT+TGG | - | chr6_3:59556464-59556483 | None:intergenic | 50.0% | |
TGGCTCATCATACCGGACTT+TGG | + | chr6_3:59556801-59556820 | Msa0955410:CDS | 50.0% | |
AACCGCAAATAGTCAGCTGG+GGG | + | chr6_3:59556865-59556884 | Msa0955410:CDS | 50.0% | |
AACCCCCAGCTGACTATTTG+CGG | - | chr6_3:59556870-59556889 | None:intergenic | 50.0% | |
GCTGGGGGTTAAATAGCTTC+TGG | + | chr6_3:59556880-59556899 | Msa0955410:CDS | 50.0% | |
!! | TGGGTTGATTCCTGTCACAG+TGG | + | chr6_3:59557760-59557779 | Msa0955410:CDS | 50.0% |
! | CCTTTGGTTTCCACTGTGAC+AGG | - | chr6_3:59557773-59557792 | None:intergenic | 50.0% |
CCTGTCACAGTGGAAACCAA+AGG | + | chr6_3:59557770-59557789 | Msa0955410:CDS | 50.0% | |
ACAGCAGAGAGTGAAAGAGC+TGG | + | chr6_3:59557794-59557813 | Msa0955410:CDS | 50.0% | |
GAAAGAGCTGGTGGAGAAGT+TGG | + | chr6_3:59557806-59557825 | Msa0955410:CDS | 50.0% | |
TCCTCGGAGTTCTACACAGA+AGG | + | chr6_3:59557835-59557854 | Msa0955410:CDS | 50.0% | |
CCTCGGAGTTCTACACAGAA+GGG | + | chr6_3:59557836-59557855 | Msa0955410:CDS | 50.0% | |
ACCTACCCAGCAGAAGCAAA+AGG | + | chr6_3:59557982-59558001 | Msa0955410:CDS | 50.0% | |
! | TCCTTTTGCTTCTGCTGGGT+AGG | - | chr6_3:59557986-59558005 | None:intergenic | 50.0% |
! | CTGCATCCTTTTGCTTCTGC+TGG | - | chr6_3:59557991-59558010 | None:intergenic | 50.0% |
!! | GTCACTGCCATCGATTCCTT+TGG | - | chr6_3:59558534-59558553 | None:intergenic | 50.0% |
TCTGTAGCGGTAGAACTCTG+AGG | - | chr6_3:59558575-59558594 | None:intergenic | 50.0% | |
GAGTTCTACCGCTACAGAGA+AGG | + | chr6_3:59558577-59558596 | Msa0955410:CDS | 50.0% | |
CTGCACTTCCTTCTCTGTAG+CGG | - | chr6_3:59558588-59558607 | None:intergenic | 50.0% | |
TCAGCCACAGTGGAAACGAA+AGG | + | chr6_3:59559372-59559391 | Msa0955410:CDS | 50.0% | |
GTGGACTTGTGCTTTGTGCT+CGG | + | chr6_3:59559464-59559483 | Msa0955410:CDS | 50.0% | |
CCCTGTGTTTCCTCCCTTTA+AGG | - | chr6_3:59559524-59559543 | None:intergenic | 50.0% | |
ATGTTCACCTTCTGCGAAGC+AGG | - | chr6_3:59559582-59559601 | None:intergenic | 50.0% | |
! | GTTGGTAGGTTGCAAGTGGG+AGG | - | chr6_3:59555579-59555598 | None:intergenic | 55.0% |
CGGCCAATGTCACATGGCAT+TGG | + | chr6_3:59556458-59556477 | Msa0955410:intron | 55.0% | |
GGCCTTACTTGCTTGGTTGC+AGG | - | chr6_3:59557435-59557454 | None:intergenic | 55.0% | |
GCAGAGAGTGAAAGAGCTGG+TGG | + | chr6_3:59557797-59557816 | Msa0955410:CDS | 55.0% | |
CCCTTCTGTGTAGAACTCCG+AGG | - | chr6_3:59557839-59557858 | None:intergenic | 55.0% | |
! | AGAAGGGAGTGCAGAGAGAG+TGG | + | chr6_3:59557852-59557871 | Msa0955410:CDS | 55.0% |
GGAAGGAAACACAGGGTTGC+TGG | + | chr6_3:59557935-59557954 | Msa0955410:CDS | 55.0% | |
CGGTGCCCTTGTTCTCTGTT+TGG | - | chr6_3:59558213-59558232 | None:intergenic | 55.0% | |
!! | AACAGAGAACAAGGGCACCG+AGG | + | chr6_3:59558213-59558232 | Msa0955410:CDS | 55.0% |
ATCGATGGCAGTGACACAGC+TGG | + | chr6_3:59558539-59558558 | Msa0955410:CDS | 55.0% | |
GAAAGGTTCTTCTGCGGAGC+AGG | - | chr6_3:59558731-59558750 | None:intergenic | 55.0% | |
GAAGCAACCTGCTTCGCAGA+AGG | + | chr6_3:59559572-59559591 | Msa0955410:CDS | 55.0% | |
GAGGCTGGGACGTGCAGAAT+TGG | - | chr6_3:59558130-59558149 | None:intergenic | 60.0% | |
TTCTGCACGTCCCAGCCTCA+TGG | + | chr6_3:59558131-59558150 | Msa0955410:intron | 60.0% | |
!! | GAACAAGGGCACCGAGGATG+TGG | + | chr6_3:59558219-59558238 | Msa0955410:CDS | 60.0% |
GATGGCAGTGACACAGCTGG+TGG | + | chr6_3:59558542-59558561 | Msa0955410:CDS | 60.0% | |
CAGTGACACAGCTGGTGGAG+AGG | + | chr6_3:59558547-59558566 | Msa0955410:CDS | 60.0% | |
!! | CAAGGGCACCGAGGATGTGG+AGG | + | chr6_3:59558222-59558241 | Msa0955410:CDS | 65.0% |
! | CACTCGCGCGCGCGCGCACT+TGG | - | chr6_3:59558394-59558413 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 59555444 | 59559737 | 59555444 | ID=Msa0955410;Name=Msa0955410 |
chr6_3 | mRNA | 59555444 | 59559737 | 59555444 | ID=Msa0955410-mRNA-1;Parent=Msa0955410;Name=Msa0955410-mRNA-1;_AED=0.31;_eAED=0.32;_QI=223|0.6|0.54|0.90|0.9|0.81|11|0|577 |
chr6_3 | exon | 59555444 | 59555494 | 59555444 | ID=Msa0955410-mRNA-1:exon:11767;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59555532 | 59555759 | 59555532 | ID=Msa0955410-mRNA-1:exon:11768;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59555878 | 59555904 | 59555878 | ID=Msa0955410-mRNA-1:exon:11769;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59556024 | 59556146 | 59556024 | ID=Msa0955410-mRNA-1:exon:11770;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59556761 | 59557001 | 59556761 | ID=Msa0955410-mRNA-1:exon:11771;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59557157 | 59557228 | 59557157 | ID=Msa0955410-mRNA-1:exon:11772;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59557360 | 59557446 | 59557360 | ID=Msa0955410-mRNA-1:exon:11773;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59557746 | 59558060 | 59557746 | ID=Msa0955410-mRNA-1:exon:11774;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59558193 | 59558279 | 59558193 | ID=Msa0955410-mRNA-1:exon:11775;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59558476 | 59558790 | 59558476 | ID=Msa0955410-mRNA-1:exon:11776;Parent=Msa0955410-mRNA-1 |
chr6_3 | exon | 59559327 | 59559737 | 59559327 | ID=Msa0955410-mRNA-1:exon:11777;Parent=Msa0955410-mRNA-1 |
chr6_3 | five_prime_UTR | 59555444 | 59555494 | 59555444 | ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1 |
chr6_3 | five_prime_UTR | 59555532 | 59555703 | 59555532 | ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59555704 | 59555759 | 59555704 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59555878 | 59555904 | 59555878 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59556024 | 59556146 | 59556024 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59556761 | 59557001 | 59556761 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59557157 | 59557228 | 59557157 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59557360 | 59557446 | 59557360 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59557746 | 59558060 | 59557746 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59558193 | 59558279 | 59558193 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59558476 | 59558790 | 59558476 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
chr6_3 | CDS | 59559327 | 59559737 | 59559327 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
Gene Sequence |
Protein sequence |