Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955410 | XP_003608382.2 | 63.127 | 339 | 81 | 9 | 272 | 573 | 141 | 472 | 1.06e-101 | 328 |
| Msa0955410 | XP_003608382.2 | 68.470 | 536 | 125 | 9 | 1 | 514 | 1 | 514 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955410 | sp|Q9S784|HA22C_ARATH | 40.805 | 174 | 85 | 7 | 7 | 168 | 14 | 181 | 5.45e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955410 | G7JV31 | 63.127 | 339 | 81 | 9 | 272 | 573 | 141 | 472 | 5.07e-102 | 328 |
| Msa0955410 | G7JV31 | 68.470 | 536 | 125 | 9 | 1 | 514 | 1 | 514 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0863930 | Msa0955410 | 0.800279 | 1.552590e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955410 | MtrunA17_Chr4g0049651 | 68.470 | 536 | 125 | 9 | 1 | 514 | 1 | 514 | 0.0 | 694 |
| Msa0955410 | MtrunA17_Chr4g0049651 | 63.127 | 339 | 81 | 9 | 272 | 573 | 141 | 472 | 9.76e-106 | 328 |
| Msa0955410 | MtrunA17_Chr4g0049671 | 54.153 | 602 | 195 | 16 | 1 | 570 | 1 | 553 | 0.0 | 541 |
| Msa0955410 | MtrunA17_Chr4g0049701 | 67.692 | 260 | 77 | 3 | 20 | 274 | 17 | 274 | 2.06e-121 | 361 |
| Msa0955410 | MtrunA17_Chr4g0049701 | 63.399 | 153 | 46 | 4 | 289 | 440 | 153 | 296 | 3.75e-50 | 176 |
| Msa0955410 | MtrunA17_Chr4g0049701 | 66.667 | 75 | 24 | 1 | 449 | 522 | 205 | 279 | 9.13e-21 | 93.6 |
| Msa0955410 | MtrunA17_Chr4g0049681 | 68.398 | 231 | 65 | 5 | 212 | 441 | 20 | 243 | 4.36e-95 | 291 |
| Msa0955410 | MtrunA17_Chr4g0049681 | 48.636 | 220 | 79 | 5 | 342 | 530 | 11 | 227 | 6.23e-45 | 160 |
| Msa0955410 | MtrunA17_Chr4g0049681 | 60.584 | 137 | 44 | 3 | 156 | 286 | 95 | 227 | 2.46e-41 | 150 |
| Msa0955410 | MtrunA17_Chr4g0049681 | 65.556 | 90 | 31 | 0 | 441 | 530 | 3 | 92 | 5.94e-29 | 116 |
| Msa0955410 | MtrunA17_Chr4g0060581 | 40.411 | 146 | 79 | 2 | 6 | 146 | 11 | 153 | 2.05e-31 | 120 |
| Msa0955410 | MtrunA17_Chr5g0416561 | 43.165 | 139 | 69 | 3 | 18 | 146 | 77 | 215 | 1.55e-25 | 105 |
| Msa0955410 | MtrunA17_Chr3g0097141 | 34.074 | 135 | 78 | 2 | 20 | 146 | 17 | 148 | 1.89e-22 | 94.4 |
| Msa0955410 | MtrunA17_Chr4g0049691 | 47.788 | 113 | 15 | 3 | 1 | 69 | 1 | 113 | 3.10e-22 | 92.0 |
| Msa0955410 | MtrunA17_Chr5g0443431 | 33.083 | 133 | 81 | 2 | 20 | 146 | 17 | 147 | 1.04e-20 | 89.4 |
| Msa0955410 | MtrunA17_Chr8g0386221 | 35.000 | 100 | 62 | 1 | 1 | 100 | 1 | 97 | 4.15e-17 | 77.4 |
| Msa0955410 | MtrunA17_Chr5g0427761 | 24.542 | 273 | 167 | 7 | 1 | 270 | 1 | 237 | 4.20e-17 | 84.0 |
| Msa0955410 | MtrunA17_Chr3g0132031 | 37.000 | 100 | 60 | 1 | 1 | 100 | 1 | 97 | 1.35e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955410 | AT1G69700.1 | 40.805 | 174 | 85 | 7 | 7 | 168 | 14 | 181 | 5.54e-31 | 119 |
| Msa0955410 | AT1G74520.1 | 41.958 | 143 | 75 | 3 | 17 | 154 | 19 | 158 | 1.25e-29 | 115 |
| Msa0955410 | AT1G74520.2 | 41.958 | 143 | 75 | 3 | 17 | 154 | 19 | 158 | 1.25e-29 | 115 |
| Msa0955410 | AT5G62490.1 | 35.374 | 147 | 87 | 3 | 11 | 154 | 13 | 154 | 6.69e-22 | 93.2 |
| Msa0955410 | AT2G42820.1 | 36.111 | 108 | 65 | 1 | 6 | 113 | 3 | 106 | 4.84e-19 | 84.7 |
| Msa0955410 | AT5G50720.1 | 36.111 | 108 | 62 | 1 | 7 | 107 | 4 | 111 | 2.73e-18 | 81.3 |
| Msa0955410 | AT4G24960.1 | 34.000 | 100 | 63 | 1 | 1 | 100 | 1 | 97 | 1.84e-16 | 76.6 |
| Msa0955410 | AT4G24960.3 | 33.766 | 77 | 51 | 0 | 24 | 100 | 2 | 78 | 1.50e-12 | 65.5 |
Find 136 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGTGTTTCCTCCCTTTA+AGG | 0.046055 | 6_3:-59559521 | None:intergenic |
| GACTTAATTTCCCACCTTAA+TGG | 0.204603 | 6_3:+59557914 | Msa0955410:CDS |
| ACAGACTTTACATATTAATT+TGG | 0.211897 | 6_3:-59558774 | None:intergenic |
| ACCTTGAATTCCCACCTTAA+AGG | 0.229261 | 6_3:+59559507 | Msa0955410:CDS |
| CCCTGTGTTTCCTTCCATTA+AGG | 0.232179 | 6_3:-59557928 | None:intergenic |
| CTTCTGTTTCTCCTCCTCTT+TGG | 0.235953 | 6_3:-59559610 | None:intergenic |
| TGAATTCGGCTTGTAGGATT+TGG | 0.237722 | 6_3:+59555445 | Msa0955410:five_prime_UTR |
| CGGTGCCCTTGTTCTCTGTT+TGG | 0.263867 | 6_3:-59558210 | None:intergenic |
| GATTCCTTTGGTTTCTACTA+TGG | 0.266454 | 6_3:-59558519 | None:intergenic |
| AGCTTGAATTTGGTAGTAAA+TGG | 0.271198 | 6_3:+59555685 | Msa0955410:exon |
| AGAACCTTTCAGAACCCTTT+AGG | 0.273993 | 6_3:+59558741 | Msa0955410:CDS |
| TTCACTCTCTGCTGTTCCTT+TGG | 0.274660 | 6_3:-59557786 | None:intergenic |
| TCAGAGCTTGAGCTTGAATT+TGG | 0.277480 | 6_3:+59555675 | Msa0955410:five_prime_UTR |
| ACCTTGAATTCCCACATTAA+TGG | 0.284729 | 6_3:+59558656 | Msa0955410:CDS |
| TTCTTCATGGTTTCTCATAC+AGG | 0.292413 | 6_3:+59555709 | Msa0955410:CDS |
| CCCTTTAAGGTGGGAATTCA+AGG | 0.294789 | 6_3:-59559508 | None:intergenic |
| GGCCTTACTTGCTTGGTTGC+AGG | 0.296529 | 6_3:-59557432 | None:intergenic |
| ATCCTTACTTGCTTGGTTGC+AGG | 0.300313 | 6_3:-59558265 | None:intergenic |
| GAATTCGGCTTGTAGGATTT+GGG | 0.303627 | 6_3:+59555446 | Msa0955410:five_prime_UTR |
| GAAAGAGCTGGTGGAGAAGT+TGG | 0.315787 | 6_3:+59557806 | Msa0955410:CDS |
| CCTTGAATTCCCACATTAAT+GGG | 0.319670 | 6_3:+59558657 | Msa0955410:CDS |
| CGATGATAAAGAAATGTTAA+AGG | 0.331489 | 6_3:+59557207 | Msa0955410:CDS |
| CCTTGAATTCCCACCTTAAA+GGG | 0.333471 | 6_3:+59559508 | Msa0955410:CDS |
| GCTGACTATTTGCGGTTTCA+TGG | 0.335387 | 6_3:-59556859 | None:intergenic |
| TTCTAGGCCTCTTGTTGCTC+TGG | 0.337704 | 6_3:+59555872 | Msa0955410:intron |
| TGTGGGAATTCAAGGTTATC+TGG | 0.341223 | 6_3:-59558649 | None:intergenic |
| TCATTTGTCACTTCTGCATC+AGG | 0.350141 | 6_3:-59557172 | None:intergenic |
| GCTAGCAATGAGTTTCTCTA+AGG | 0.350536 | 6_3:-59556976 | None:intergenic |
| CTAAGCTAATGATAATCTTC+TGG | 0.358270 | 6_3:+59556781 | Msa0955410:CDS |
| GGTAGTAAATGGCTTCTTCA+TGG | 0.362420 | 6_3:+59555696 | Msa0955410:exon |
| CCCATTAATGTGGGAATTCA+AGG | 0.362628 | 6_3:-59558657 | None:intergenic |
| CTAAGGATTTGATCTCATAT+TGG | 0.368288 | 6_3:+59556068 | Msa0955410:CDS |
| GTCACTGCCATCGATTCCTT+TGG | 0.369658 | 6_3:-59558531 | None:intergenic |
| ATATTCAAAGAGGTAAATTA+AGG | 0.374191 | 6_3:-59556101 | None:intergenic |
| TTGGAATTAATCAACCTAAA+GGG | 0.375665 | 6_3:-59558755 | None:intergenic |
| CCTTTGGTTTCCACTGTGAC+AGG | 0.391417 | 6_3:-59557770 | None:intergenic |
| AAATAATAAAGTAGTTTAGT+TGG | 0.392113 | 6_3:-59555594 | None:intergenic |
| GGAAGGAAACACAGGGTTGC+TGG | 0.399734 | 6_3:+59557935 | Msa0955410:CDS |
| GAAAGGTTCTTCTGCGGAGC+AGG | 0.422036 | 6_3:-59558728 | None:intergenic |
| AACAGTAGTGATGGATGATA+AGG | 0.432339 | 6_3:+59559701 | Msa0955410:CDS |
| TTTGGAATTAATCAACCTAA+AGG | 0.440188 | 6_3:-59558756 | None:intergenic |
| TGAATGAGGCCTTACTTGCT+TGG | 0.443918 | 6_3:-59557439 | None:intergenic |
| TGAATGAATCCTTACTTGCT+TGG | 0.445111 | 6_3:-59558272 | None:intergenic |
| TGGCTCATCATACCGGACTT+TGG | 0.448937 | 6_3:+59556801 | Msa0955410:CDS |
| AATAAAGTAGTTTAGTTGGT+AGG | 0.449509 | 6_3:-59555590 | None:intergenic |
| TGACTCATATGCTGAAACTA+AGG | 0.450349 | 6_3:+59556051 | Msa0955410:CDS |
| ATGTTCACCTTCTGCGAAGC+AGG | 0.458818 | 6_3:-59559579 | None:intergenic |
| CATACCATGCAAAATGATGA+AGG | 0.459168 | 6_3:-59555742 | None:intergenic |
| GTGGACTTGTGCTTTATGTT+TGG | 0.459600 | 6_3:+59558613 | Msa0955410:CDS |
| GGAGCTAATATTCTTAAGAA+AGG | 0.463915 | 6_3:+59559669 | Msa0955410:CDS |
| GTCAGTTTCAATTGCTTGTA+CGG | 0.466858 | 6_3:-59556032 | None:intergenic |
| TATTCTTAAGAAAGGATTGA+AGG | 0.469642 | 6_3:+59559677 | Msa0955410:CDS |
| AGGGTCTTTGTGCAGACAAA+TGG | 0.469962 | 6_3:+59557345 | Msa0955410:intron |
| GAGAGATATATGAAAGAGAA+TGG | 0.473137 | 6_3:+59556945 | Msa0955410:CDS |
| GAACAAGGGCACCGAGGATG+TGG | 0.473925 | 6_3:+59558219 | Msa0955410:CDS |
| AAAGAATTTACCATAGAAGA+AGG | 0.474141 | 6_3:-59556135 | None:intergenic |
| GTGGACTTGTGCTATATGTT+TGG | 0.475777 | 6_3:+59557871 | Msa0955410:CDS |
| AATGGAAAAGGCAAAGGAAA+AGG | 0.477497 | 6_3:-59555653 | None:intergenic |
| ACCTTAAAGGGAGGAAACAC+AGG | 0.478853 | 6_3:+59559520 | Msa0955410:CDS |
| ATTCAAGCTCAAGCTCTGAA+TGG | 0.481661 | 6_3:-59555671 | None:intergenic |
| ACAGCAAAGAGTGACAAATC+TGG | 0.484031 | 6_3:+59559396 | Msa0955410:CDS |
| TGAAACCGCAAATAGTCAGC+TGG | 0.488233 | 6_3:+59556862 | Msa0955410:CDS |
| GTGTTTCCTCCCTTTAAGGT+GGG | 0.490716 | 6_3:-59559517 | None:intergenic |
| GCTCAAGCTCTGAATGGAAA+AGG | 0.492643 | 6_3:-59555665 | None:intergenic |
| TGTGTTTCCTCCCATTAATG+TGG | 0.493651 | 6_3:-59558667 | None:intergenic |
| TAAGAAGCTCGTCCAAAGTC+CGG | 0.504580 | 6_3:-59556813 | None:intergenic |
| ACAGTAGTGATGGATGATAA+GGG | 0.505518 | 6_3:+59559702 | Msa0955410:CDS |
| TGTGTTTCCTCCCTTTAAGG+TGG | 0.506534 | 6_3:-59559518 | None:intergenic |
| ATCAATAGCCTCCACATCCT+CGG | 0.513504 | 6_3:-59558230 | None:intergenic |
| ATTAGCTCCACTCTTAACAT+TGG | 0.515615 | 6_3:-59559655 | None:intergenic |
| CTTTAACATTTCTTTATCAT+CGG | 0.517051 | 6_3:-59557206 | None:intergenic |
| ATTCTTAAGAAAGGATTGAA+GGG | 0.518639 | 6_3:+59559678 | Msa0955410:CDS |
| TTCAATTCCAATGTTAAGAG+TGG | 0.520475 | 6_3:+59559648 | Msa0955410:CDS |
| AATCTTCTGGCTCATCATAC+CGG | 0.523416 | 6_3:+59556794 | Msa0955410:CDS |
| AGAAGGAAGTGCAGAAAGAG+TGG | 0.523749 | 6_3:+59558594 | Msa0955410:CDS |
| GACACGGAGCAAAATGTCAT+TGG | 0.524996 | 6_3:-59555535 | None:intergenic |
| ATTGAAGGGAACAGTAGTGA+TGG | 0.528979 | 6_3:+59559692 | Msa0955410:CDS |
| AATTCGGCTTGTAGGATTTG+GGG | 0.529316 | 6_3:+59555447 | Msa0955410:five_prime_UTR |
| GAAACCGCAAATAGTCAGCT+GGG | 0.529318 | 6_3:+59556863 | Msa0955410:CDS |
| TCCTCGGAGTTCTACACAGA+AGG | 0.530592 | 6_3:+59557835 | Msa0955410:CDS |
| TGTGTTTCCTTCCATTAAGG+TGG | 0.531895 | 6_3:-59557925 | None:intergenic |
| AGAAGGGAGTGCAGAGAGAG+TGG | 0.533062 | 6_3:+59557852 | Msa0955410:CDS |
| TTGACATCAGGTTTCAACTC+TGG | 0.534511 | 6_3:+59556751 | Msa0955410:intron |
| TAAATAGCTTCTGGAAGAAG+TGG | 0.534630 | 6_3:+59556889 | Msa0955410:CDS |
| ACCTACCCAGCAGAAGCAAA+AGG | 0.535322 | 6_3:+59557982 | Msa0955410:CDS |
| GTGTTTCCTCCCATTAATGT+GGG | 0.538572 | 6_3:-59558666 | None:intergenic |
| GTTGGTAGGTTGCAAGTGGG+AGG | 0.540862 | 6_3:-59555576 | None:intergenic |
| TAATTTCCCACCTTAATGGA+AGG | 0.543554 | 6_3:+59557918 | Msa0955410:CDS |
| AGAAGGAAGTGCAGAAAGAG+TGG | 0.545798 | 6_3:+59559445 | Msa0955410:CDS |
| TTTAGTTGGTAGGTTGCAAG+TGG | 0.547642 | 6_3:-59555580 | None:intergenic |
| ATTATCATTAGCTTAGTGTA+CGG | 0.553564 | 6_3:-59556774 | None:intergenic |
| TCTTAAGAGTTCTACACAGA+AGG | 0.554349 | 6_3:+59559428 | Msa0955410:CDS |
| GTGTTTCCTTCCATTAAGGT+GGG | 0.556051 | 6_3:-59557924 | None:intergenic |
| GAGTTCTACCGCTACAGAGA+AGG | 0.557049 | 6_3:+59558577 | Msa0955410:CDS |
| ATCGATGGCAGTGACACAGC+TGG | 0.560659 | 6_3:+59558539 | Msa0955410:CDS |
| AAGACTCCAAACAGAGAACA+AGG | 0.564033 | 6_3:+59558204 | Msa0955410:CDS |
| GTGGACTTGTGCTTTGTGCT+CGG | 0.565292 | 6_3:+59559464 | Msa0955410:CDS |
| ACCTTAATGGAAGGAAACAC+AGG | 0.566703 | 6_3:+59557927 | Msa0955410:CDS |
| TTGTGCAGACAAATGGAGAA+AGG | 0.568069 | 6_3:+59557352 | Msa0955410:intron |
| AGAGAAACTCATTGCTAGCA+AGG | 0.570547 | 6_3:+59556980 | Msa0955410:CDS |
| GAAGCAACCTGCTTCGCAGA+AGG | 0.574291 | 6_3:+59559572 | Msa0955410:CDS |
| GCAGAGAGTGAAAGAGCTGG+TGG | 0.576755 | 6_3:+59557797 | Msa0955410:CDS |
| CTGCACTTCCTTCTCTGTAG+CGG | 0.591044 | 6_3:-59558585 | None:intergenic |
| GTAGAAACCAAAGGAATCGA+TGG | 0.600338 | 6_3:+59558524 | Msa0955410:CDS |
| CAAGGGCACCGAGGATGTGG+AGG | 0.603207 | 6_3:+59558222 | Msa0955410:CDS |
| GAGAAGTTGGAGAAGTTCCT+CGG | 0.603517 | 6_3:+59557819 | Msa0955410:CDS |
| TGGGTTGATTCCTGTCACAG+TGG | 0.604211 | 6_3:+59557760 | Msa0955410:CDS |
| ACAGCAGAGAGTGAAAGAGC+TGG | 0.604386 | 6_3:+59557794 | Msa0955410:CDS |
| TCAACCTAAAGGGTTCTGAA+AGG | 0.610088 | 6_3:-59558745 | None:intergenic |
| GATGGCAGTGACACAGCTGG+TGG | 0.610562 | 6_3:+59558542 | Msa0955410:CDS |
| CAGTGACACAGCTGGTGGAG+AGG | 0.620558 | 6_3:+59558547 | Msa0955410:CDS |
| TGATAAAAGCATATTCAAAG+AGG | 0.621411 | 6_3:-59556111 | None:intergenic |
| TTAGTTGGTAGGTTGCAAGT+GGG | 0.625200 | 6_3:-59555579 | None:intergenic |
| GCTCTGAATGGAAAAGGCAA+AGG | 0.636512 | 6_3:-59555659 | None:intergenic |
| TGAATTCCCACATTAATGGG+AGG | 0.637945 | 6_3:+59558660 | Msa0955410:CDS |
| CCTCGGAGTTCTACACAGAA+GGG | 0.638306 | 6_3:+59557836 | Msa0955410:CDS |
| AAACCGCAAATAGTCAGCTG+GGG | 0.642341 | 6_3:+59556864 | Msa0955410:CDS |
| TATTGTAGAACACAATGTGT+AGG | 0.642645 | 6_3:+59557149 | Msa0955410:intron |
| TGAATTCCCACCTTAAAGGG+AGG | 0.644369 | 6_3:+59559511 | Msa0955410:CDS |
| CATCTATCAGTCCAAAGAGG+AGG | 0.649279 | 6_3:+59559599 | Msa0955410:CDS |
| GGTTCTGAAAGGTTCTTCTG+CGG | 0.657548 | 6_3:-59558734 | None:intergenic |
| TGTTCCTTTCGTTTCCACTG+TGG | 0.658741 | 6_3:-59559376 | None:intergenic |
| TCAGCCACAGTGGAAACGAA+AGG | 0.659859 | 6_3:+59559372 | Msa0955410:CDS |
| AAATGCATCATCAGCCACAG+TGG | 0.664078 | 6_3:+59559362 | Msa0955410:CDS |
| CCTGTCACAGTGGAAACCAA+AGG | 0.667906 | 6_3:+59557770 | Msa0955410:CDS |
| GGATACACCAGAGCAACAAG+AGG | 0.670998 | 6_3:-59555879 | None:intergenic |
| TCAACCATAGTAGAAACCAA+AGG | 0.674077 | 6_3:+59558515 | Msa0955410:CDS |
| CCTTAATGGAAGGAAACACA+GGG | 0.683958 | 6_3:+59557928 | Msa0955410:CDS |
| AACCGCAAATAGTCAGCTGG+GGG | 0.687491 | 6_3:+59556865 | Msa0955410:CDS |
| CCTTAAAGGGAGGAAACACA+GGG | 0.688692 | 6_3:+59559521 | Msa0955410:CDS |
| TCTGTAGCGGTAGAACTCTG+AGG | 0.692705 | 6_3:-59558572 | None:intergenic |
| GAACATCTATCAGTCCAAAG+AGG | 0.699297 | 6_3:+59559596 | Msa0955410:CDS |
| AGACTCCAAACAGAGAACAA+GGG | 0.699952 | 6_3:+59558205 | Msa0955410:CDS |
| AACAGAGAACAAGGGCACCG+AGG | 0.716455 | 6_3:+59558213 | Msa0955410:CDS |
| CCCTTCTGTGTAGAACTCCG+AGG | 0.719311 | 6_3:-59557836 | None:intergenic |
| GAAAATAAGATATACCGACA+CGG | 0.734851 | 6_3:-59555551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAAAGTAGTTTAGT+TGG | - | chr6_3:59555597-59555616 | None:intergenic | 15.0% |
| !!! | TAAATTTTTAGTAGAGATTA+AGG | + | chr6_3:59556699-59556718 | Msa0955410:intron | 15.0% |
| !! | TTTATTCTTCCAATTAAATT+GGG | + | chr6_3:59557674-59557693 | Msa0955410:intron | 15.0% |
| !! | TGACAAATAATTATAACAAA+AGG | + | chr6_3:59559026-59559045 | Msa0955410:intron | 15.0% |
| !! | TGTCAAAACAATAATGTAAA+AGG | - | chr6_3:59555952-59555971 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTTTTGCGATTA+TGG | + | chr6_3:59555990-59556009 | Msa0955410:intron | 20.0% |
| !! | ATATTCAAAGAGGTAAATTA+AGG | - | chr6_3:59556104-59556123 | None:intergenic | 20.0% |
| !! | ATAATAGTGCATTTATGTAT+TGG | + | chr6_3:59556176-59556195 | Msa0955410:intron | 20.0% |
| !! | TTTCATAAATGATCAATAGA+TGG | - | chr6_3:59556239-59556258 | None:intergenic | 20.0% |
| !! | TAAGGTTCACTTATTAAAAT+TGG | + | chr6_3:59556282-59556301 | Msa0955410:intron | 20.0% |
| !! | TTAGCAAGTAATAAATAAGT+AGG | - | chr6_3:59556550-59556569 | None:intergenic | 20.0% |
| !! | CTTTAACATTTCTTTATCAT+CGG | - | chr6_3:59557209-59557228 | None:intergenic | 20.0% |
| !!! | ACATTTTCAACATATATCTA+TGG | - | chr6_3:59557645-59557664 | None:intergenic | 20.0% |
| !! | GTTTATTCTTCCAATTAAAT+TGG | + | chr6_3:59557673-59557692 | Msa0955410:intron | 20.0% |
| !!! | TTGCAGGATATAATTTTTAT+TGG | + | chr6_3:59557740-59557759 | Msa0955410:intron | 20.0% |
| !!! | TGCAGGATATAATTTTTATT+GGG | + | chr6_3:59557741-59557760 | Msa0955410:intron | 20.0% |
| !!! | TTTTTTATTATCAGTAGCTA+TGG | - | chr6_3:59558032-59558051 | None:intergenic | 20.0% |
| !! | TGATAATAAAAAAATACCCA+AGG | + | chr6_3:59558039-59558058 | Msa0955410:CDS | 20.0% |
| !!! | TTTAAAATAGAAATCTTCCA+AGG | + | chr6_3:59558303-59558322 | Msa0955410:intron | 20.0% |
| !!! | CTAAAATTTTAATTTGTCCT+TGG | - | chr6_3:59558323-59558342 | None:intergenic | 20.0% |
| !! | ACAGACTTTACATATTAATT+TGG | - | chr6_3:59558777-59558796 | None:intergenic | 20.0% |
| !! | AAAATGCTATCAAAACTAAT+AGG | - | chr6_3:59559188-59559207 | None:intergenic | 20.0% |
| !! | TAGTAAGTCATATATGTAAT+TGG | - | chr6_3:59559247-59559266 | None:intergenic | 20.0% |
| ! | GTTAAATACATACTTCAAGT+AGG | - | chr6_3:59555501-59555520 | None:intergenic | 25.0% |
| ! | AATAAAGTAGTTTAGTTGGT+AGG | - | chr6_3:59555593-59555612 | None:intergenic | 25.0% |
| ! | AAGATGAAGAAAATAAAGGA+GGG | - | chr6_3:59555786-59555805 | None:intergenic | 25.0% |
| ! | AAAGATGAAGAAAATAAAGG+AGG | - | chr6_3:59555787-59555806 | None:intergenic | 25.0% |
| ! | GAGAAAGATGAAGAAAATAA+AGG | - | chr6_3:59555790-59555809 | None:intergenic | 25.0% |
| ! | AAGAGAAGGAAAATAAAGAA+GGG | - | chr6_3:59555852-59555871 | None:intergenic | 25.0% |
| ! | AAAGAGAAGGAAAATAAAGA+AGG | - | chr6_3:59555853-59555872 | None:intergenic | 25.0% |
| !! | TTATTTTCCTTCTCTTTTCT+AGG | + | chr6_3:59555856-59555875 | Msa0955410:intron | 25.0% |
| !!! | TTTTTTGCGATTATGGTTTT+TGG | + | chr6_3:59555997-59556016 | Msa0955410:intron | 25.0% |
| !! | TGATAAAAGCATATTCAAAG+AGG | - | chr6_3:59556114-59556133 | None:intergenic | 25.0% |
| ! | AAAGAATTTACCATAGAAGA+AGG | - | chr6_3:59556138-59556157 | None:intergenic | 25.0% |
| ! | TAAATGCACTATTATACTTG+TGG | - | chr6_3:59556171-59556190 | None:intergenic | 25.0% |
| ! | ATAAATGATCAATAGATGGA+GGG | - | chr6_3:59556235-59556254 | None:intergenic | 25.0% |
| ! | AAACATAAGTGAAAGAAGTA+AGG | + | chr6_3:59556264-59556283 | Msa0955410:intron | 25.0% |
| ! | GATTTACTCCATTTATCTAT+GGG | - | chr6_3:59556508-59556527 | None:intergenic | 25.0% |
| ! | AGATTTACTCCATTTATCTA+TGG | - | chr6_3:59556509-59556528 | None:intergenic | 25.0% |
| ! | ATGATTCATAGAAATATTGC+CGG | - | chr6_3:59556606-59556625 | None:intergenic | 25.0% |
| !! | ATTATCATTAGCTTAGTGTA+CGG | - | chr6_3:59556777-59556796 | None:intergenic | 25.0% |
| !! | TGACATTTTTATCCTATGTT+GGG | - | chr6_3:59557051-59557070 | None:intergenic | 25.0% |
| !! | TTGACATTTTTATCCTATGT+TGG | - | chr6_3:59557052-59557071 | None:intergenic | 25.0% |
| !! | ACAACTCTAGAAAAATTATG+TGG | + | chr6_3:59557078-59557097 | Msa0955410:intron | 25.0% |
| !! | CAACTCTAGAAAAATTATGT+GGG | + | chr6_3:59557079-59557098 | Msa0955410:intron | 25.0% |
| ! | CGATGATAAAGAAATGTTAA+AGG | + | chr6_3:59557207-59557226 | Msa0955410:CDS | 25.0% |
| ! | TTTGAGTGAATATATGAATG+AGG | - | chr6_3:59557456-59557475 | None:intergenic | 25.0% |
| !!! | CTAAAACTTTAATTTGTCCT+TGG | - | chr6_3:59557490-59557509 | None:intergenic | 25.0% |
| ! | TTATTACTCATGCATACAAA+GGG | - | chr6_3:59557619-59557638 | None:intergenic | 25.0% |
| ! | ATTATTACTCATGCATACAA+AGG | - | chr6_3:59557620-59557639 | None:intergenic | 25.0% |
| ! | TACAAACAACCCAATTTAAT+TGG | - | chr6_3:59557686-59557705 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTGAATTGTTGT+TGG | + | chr6_3:59558447-59558466 | Msa0955410:intron | 25.0% |
| ! | TTGGAATTAATCAACCTAAA+GGG | - | chr6_3:59558758-59558777 | None:intergenic | 25.0% |
| !! | TTTGGAATTAATCAACCTAA+AGG | - | chr6_3:59558759-59558778 | None:intergenic | 25.0% |
| !! | ACTTGTCTAAAATTCAAAGT+TGG | + | chr6_3:59558852-59558871 | Msa0955410:intron | 25.0% |
| ! | ATGAAAGTTGAAAAGCAAAT+TGG | + | chr6_3:59558909-59558928 | Msa0955410:intron | 25.0% |
| ! | TGAAAGTTGAAAAGCAAATT+GGG | + | chr6_3:59558910-59558929 | Msa0955410:intron | 25.0% |
| !! | TTTAAGAATCAGCAATGTTT+TGG | - | chr6_3:59558967-59558986 | None:intergenic | 25.0% |
| !!! | AAACATTGCTGATTCTTAAA+TGG | + | chr6_3:59558967-59558986 | Msa0955410:intron | 25.0% |
| !! | TTAGTTTGAGTATTGCTATT+TGG | + | chr6_3:59559001-59559020 | Msa0955410:intron | 25.0% |
| ! | TATCAAAACTAATAGGAGAA+TGG | - | chr6_3:59559181-59559200 | None:intergenic | 25.0% |
| ! | CAATATATACACACAAATAC+AGG | - | chr6_3:59559285-59559304 | None:intergenic | 25.0% |
| ! | TATTCTTAAGAAAGGATTGA+AGG | + | chr6_3:59559677-59559696 | Msa0955410:CDS | 25.0% |
| ! | ATTCTTAAGAAAGGATTGAA+GGG | + | chr6_3:59559678-59559697 | Msa0955410:CDS | 25.0% |
| GAAAATAAGATATACCGACA+CGG | - | chr6_3:59555554-59555573 | None:intergenic | 30.0% | |
| ! | AGCTTGAATTTGGTAGTAAA+TGG | + | chr6_3:59555685-59555704 | Msa0955410:exon | 30.0% |
| CTAAGGATTTGATCTCATAT+TGG | + | chr6_3:59556068-59556087 | Msa0955410:CDS | 30.0% | |
| ! | CTTTTATCAACCTTCTTCTA+TGG | + | chr6_3:59556125-59556144 | Msa0955410:CDS | 30.0% |
| ATAGTGCATTTATGTATTGG+TGG | + | chr6_3:59556179-59556198 | Msa0955410:intron | 30.0% | |
| CATAAATGATCAATAGATGG+AGG | - | chr6_3:59556236-59556255 | None:intergenic | 30.0% | |
| GGTTCACTTATTAAAATTGG+CGG | + | chr6_3:59556285-59556304 | Msa0955410:intron | 30.0% | |
| TCTCGTAAATGGATAATTAC+CGG | + | chr6_3:59556335-59556354 | Msa0955410:intron | 30.0% | |
| ! | TTTATTACTTGCTAAAGCCA+CGG | + | chr6_3:59556555-59556574 | Msa0955410:intron | 30.0% |
| !! | TGTTATTTCGCCAAATTAAC+CGG | + | chr6_3:59556584-59556603 | Msa0955410:intron | 30.0% |
| ! | AGAAATATTGCCGGTTAATT+TGG | - | chr6_3:59556597-59556616 | None:intergenic | 30.0% |
| TCAGAGTAAAAAAACGAACT+TGG | - | chr6_3:59556629-59556648 | None:intergenic | 30.0% | |
| GATTAAGATCAAGTTCAATC+AGG | - | chr6_3:59556661-59556680 | None:intergenic | 30.0% | |
| AAGTTCAATCAGGTACTAAA+AGG | - | chr6_3:59556733-59556752 | None:intergenic | 30.0% | |
| CTAAGCTAATGATAATCTTC+TGG | + | chr6_3:59556781-59556800 | Msa0955410:CDS | 30.0% | |
| GAGAGATATATGAAAGAGAA+TGG | + | chr6_3:59556945-59556964 | Msa0955410:CDS | 30.0% | |
| GCATTATGCTGCATAAAAAT+TGG | + | chr6_3:59557017-59557036 | Msa0955410:intron | 30.0% | |
| TATTGTAGAACACAATGTGT+AGG | + | chr6_3:59557149-59557168 | Msa0955410:intron | 30.0% | |
| ! | TGATATCTTTTTGCTCTGTT+TGG | - | chr6_3:59557380-59557399 | None:intergenic | 30.0% |
| ACAGAGCAAAAAGATATCAA+AGG | + | chr6_3:59557381-59557400 | Msa0955410:CDS | 30.0% | |
| GCAAAAAGATATCAAAGGTT+TGG | + | chr6_3:59557386-59557405 | Msa0955410:CDS | 30.0% | |
| !! | AAACTTTAATTTGTCCTTGG+AGG | - | chr6_3:59557487-59557506 | None:intergenic | 30.0% |
| ACGTCATTTGTGAAATGTTT+AGG | + | chr6_3:59557527-59557546 | Msa0955410:intron | 30.0% | |
| TTAGTCTCTATGCGTATATT+TGG | + | chr6_3:59557714-59557733 | Msa0955410:intron | 30.0% | |
| TCACATCAAAACTTTACCTT+GGG | - | chr6_3:59558058-59558077 | None:intergenic | 30.0% | |
| TTCACATCAAAACTTTACCT+TGG | - | chr6_3:59558059-59558078 | None:intergenic | 30.0% | |
| ! | AAAATTTTAGACCAGAGTTG+AGG | + | chr6_3:59558333-59558352 | Msa0955410:intron | 30.0% |
| ! | AGGTCATTTGTGAAAGTTTT+AGG | + | chr6_3:59558365-59558384 | Msa0955410:intron | 30.0% |
| ATATGGCATCTCACATAAAT+CGG | + | chr6_3:59558822-59558841 | Msa0955410:intron | 30.0% | |
| GAAAGTTGAAAAGCAAATTG+GGG | + | chr6_3:59558911-59558930 | Msa0955410:intron | 30.0% | |
| ! | CACTTCGTGTAAATGTTTTA+AGG | + | chr6_3:59559056-59559075 | Msa0955410:intron | 30.0% |
| TTAATACAAACACGCAAGAT+TGG | - | chr6_3:59559130-59559149 | None:intergenic | 30.0% | |
| !!! | ATCCTATTTTTACCATTTGC+AGG | + | chr6_3:59559305-59559324 | Msa0955410:intron | 30.0% |
| ATCCTGCAAATGGTAAAAAT+AGG | - | chr6_3:59559310-59559329 | None:intergenic | 30.0% | |
| !!! | TTTTGACTTGGTGCAATTTT+AGG | - | chr6_3:59559345-59559364 | None:intergenic | 30.0% |
| TTCAATTCCAATGTTAAGAG+TGG | + | chr6_3:59559648-59559667 | Msa0955410:CDS | 30.0% | |
| GGAGCTAATATTCTTAAGAA+AGG | + | chr6_3:59559669-59559688 | Msa0955410:CDS | 30.0% | |
| AGAAGCAGAAAAAACAAGAG+AGG | + | chr6_3:59555473-59555492 | Msa0955410:five_prime_UTR | 35.0% | |
| GAAGCAGAAAAAACAAGAGA+GGG | + | chr6_3:59555474-59555493 | Msa0955410:five_prime_UTR | 35.0% | |
| ATGTATTTAACATGCGAACG+AGG | + | chr6_3:59555510-59555529 | Msa0955410:intron | 35.0% | |
| TGTATTTAACATGCGAACGA+GGG | + | chr6_3:59555511-59555530 | Msa0955410:intron | 35.0% | |
| AATGGAAAAGGCAAAGGAAA+AGG | - | chr6_3:59555656-59555675 | None:intergenic | 35.0% | |
| TTCTTCATGGTTTCTCATAC+AGG | + | chr6_3:59555709-59555728 | Msa0955410:CDS | 35.0% | |
| ! | AATGCCTTCATCATTTTGCA+TGG | + | chr6_3:59555738-59555757 | Msa0955410:CDS | 35.0% |
| CATACCATGCAAAATGATGA+AGG | - | chr6_3:59555745-59555764 | None:intergenic | 35.0% | |
| TCCTATGTAAGTTCTTGATC+TGG | + | chr6_3:59555899-59555918 | Msa0955410:intron | 35.0% | |
| GTCAGTTTCAATTGCTTGTA+CGG | - | chr6_3:59556035-59556054 | None:intergenic | 35.0% | |
| TGACTCATATGCTGAAACTA+AGG | + | chr6_3:59556051-59556070 | Msa0955410:CDS | 35.0% | |
| AAATGGATAATTACCGGAAG+AGG | + | chr6_3:59556341-59556360 | Msa0955410:intron | 35.0% | |
| AATGGATAATTACCGGAAGA+GGG | + | chr6_3:59556342-59556361 | Msa0955410:intron | 35.0% | |
| ATCATTTATCTACCCTCTTC+CGG | - | chr6_3:59556357-59556376 | None:intergenic | 35.0% | |
| TGATAGCACTTGTGTAATTG+AGG | + | chr6_3:59556373-59556392 | Msa0955410:intron | 35.0% | |
| ! | AACTGATACGTGTCACATTT+TGG | - | chr6_3:59556425-59556444 | None:intergenic | 35.0% |
| ATCAGTTGTCACATTGTAGT+CGG | + | chr6_3:59556438-59556457 | Msa0955410:intron | 35.0% | |
| AAGTGCTACCCATAGATAAA+TGG | + | chr6_3:59556497-59556516 | Msa0955410:intron | 35.0% | |
| ! | TAAATAGCTTCTGGAAGAAG+TGG | + | chr6_3:59556889-59556908 | Msa0955410:CDS | 35.0% |
| !! | GGGTGTTTTTACATCTACAT+CGG | + | chr6_3:59557099-59557118 | Msa0955410:intron | 35.0% |
| TTGACTCATAGAAGAACTAG+TGG | - | chr6_3:59557278-59557297 | None:intergenic | 35.0% | |
| TTCTACCTTTCTTAGTCTCA+TGG | + | chr6_3:59557298-59557317 | Msa0955410:intron | 35.0% | |
| ! | ATTTAGAGTACTAACGAGAG+AGG | + | chr6_3:59557325-59557344 | Msa0955410:intron | 35.0% |
| ! | TTTAGAGTACTAACGAGAGA+GGG | + | chr6_3:59557326-59557345 | Msa0955410:intron | 35.0% |
| CTCAAAATAGAAATCCTCCA+AGG | + | chr6_3:59557470-59557489 | Msa0955410:intron | 35.0% | |
| GACTTAATTTCCCACCTTAA+TGG | + | chr6_3:59557914-59557933 | Msa0955410:CDS | 35.0% | |
| TAATTTCCCACCTTAATGGA+AGG | + | chr6_3:59557918-59557937 | Msa0955410:CDS | 35.0% | |
| TGAATGAATCCTTACTTGCT+TGG | - | chr6_3:59558275-59558294 | None:intergenic | 35.0% | |
| GTGTGTGTGTGTAAATTGTA+TGG | + | chr6_3:59558415-59558434 | Msa0955410:intron | 35.0% | |
| GTGTGTAAATTGTATGGATG+TGG | + | chr6_3:59558421-59558440 | Msa0955410:intron | 35.0% | |
| TCAACCATAGTAGAAACCAA+AGG | + | chr6_3:59558515-59558534 | Msa0955410:CDS | 35.0% | |
| ! | GATTCCTTTGGTTTCTACTA+TGG | - | chr6_3:59558522-59558541 | None:intergenic | 35.0% |
| ACCTTGAATTCCCACATTAA+TGG | + | chr6_3:59558656-59558675 | Msa0955410:CDS | 35.0% | |
| CCTTGAATTCCCACATTAAT+GGG | + | chr6_3:59558657-59558676 | Msa0955410:CDS | 35.0% | |
| TAATGTTATGCTTCCAAGTG+AGG | + | chr6_3:59558796-59558815 | Msa0955410:intron | 35.0% | |
| !! | AGTTTTGATAACCATAGCGT+AGG | + | chr6_3:59558876-59558895 | Msa0955410:intron | 35.0% |
| !! | GTTTTGATAACCATAGCGTA+GGG | + | chr6_3:59558877-59558896 | Msa0955410:intron | 35.0% |
| !!! | TGCTATTTTGCAGAAAACAC+AGG | + | chr6_3:59559098-59559117 | Msa0955410:intron | 35.0% |
| TCTTAAGAGTTCTACACAGA+AGG | + | chr6_3:59559428-59559447 | Msa0955410:CDS | 35.0% | |
| ATTAGCTCCACTCTTAACAT+TGG | - | chr6_3:59559658-59559677 | None:intergenic | 35.0% | |
| !! | AACAGTAGTGATGGATGATA+AGG | + | chr6_3:59559701-59559720 | Msa0955410:CDS | 35.0% |
| !! | ACAGTAGTGATGGATGATAA+GGG | + | chr6_3:59559702-59559721 | Msa0955410:CDS | 35.0% |
| ! | TGAATTCGGCTTGTAGGATT+TGG | + | chr6_3:59555445-59555464 | Msa0955410:five_prime_UTR | 40.0% |
| ! | GAATTCGGCTTGTAGGATTT+GGG | + | chr6_3:59555446-59555465 | Msa0955410:five_prime_UTR | 40.0% |
| ! | AATTCGGCTTGTAGGATTTG+GGG | + | chr6_3:59555447-59555466 | Msa0955410:five_prime_UTR | 40.0% |
| ! | AATGACATTTTGCTCCGTGT+CGG | + | chr6_3:59555537-59555556 | Msa0955410:five_prime_UTR | 40.0% |
| !! | TTAGTTGGTAGGTTGCAAGT+GGG | - | chr6_3:59555582-59555601 | None:intergenic | 40.0% |
| !! | TTTAGTTGGTAGGTTGCAAG+TGG | - | chr6_3:59555583-59555602 | None:intergenic | 40.0% |
| !! | ATTCAAGCTCAAGCTCTGAA+TGG | - | chr6_3:59555674-59555693 | None:intergenic | 40.0% |
| TCAGAGCTTGAGCTTGAATT+TGG | + | chr6_3:59555675-59555694 | Msa0955410:five_prime_UTR | 40.0% | |
| GGTAGTAAATGGCTTCTTCA+TGG | + | chr6_3:59555696-59555715 | Msa0955410:exon | 40.0% | |
| GCCAGATCAAGAACTTACAT+AGG | - | chr6_3:59555903-59555922 | None:intergenic | 40.0% | |
| AAGTTCTTGATCTGGCTGTT+TGG | + | chr6_3:59555907-59555926 | Msa0955410:intron | 40.0% | |
| !! | TGCGATTATGGTTTTTGGAC+AGG | + | chr6_3:59556002-59556021 | Msa0955410:intron | 40.0% |
| !! | TTATGTATTGGTGGCGTGTT+TGG | + | chr6_3:59556188-59556207 | Msa0955410:intron | 40.0% |
| GTGTCTATGTCTCTCGTAAA+TGG | + | chr6_3:59556324-59556343 | Msa0955410:intron | 40.0% | |
| GTGCCAATGTCATGTGATAT+TGG | + | chr6_3:59556395-59556414 | Msa0955410:intron | 40.0% | |
| TGGCCAATATCACATGACAT+TGG | - | chr6_3:59556401-59556420 | None:intergenic | 40.0% | |
| !! | GATACGTGTCACATTTTGGT+TGG | - | chr6_3:59556421-59556440 | None:intergenic | 40.0% |
| ACCTGATTGAACTTGACATC+AGG | + | chr6_3:59556739-59556758 | Msa0955410:intron | 40.0% | |
| ACCTGATGTCAAGTTCAATC+AGG | - | chr6_3:59556743-59556762 | None:intergenic | 40.0% | |
| TTGACATCAGGTTTCAACTC+TGG | + | chr6_3:59556751-59556770 | Msa0955410:intron | 40.0% | |
| !! | AATCTTCTGGCTCATCATAC+CGG | + | chr6_3:59556794-59556813 | Msa0955410:CDS | 40.0% |
| GCTAGCAATGAGTTTCTCTA+AGG | - | chr6_3:59556979-59556998 | None:intergenic | 40.0% | |
| AGAGAAACTCATTGCTAGCA+AGG | + | chr6_3:59556980-59556999 | Msa0955410:CDS | 40.0% | |
| TTGGAGTACAAACCCAACAT+AGG | + | chr6_3:59557036-59557055 | Msa0955410:intron | 40.0% | |
| ! | TCATTTGTCACTTCTGCATC+AGG | - | chr6_3:59557175-59557194 | None:intergenic | 40.0% |
| TGTCACCATGAGACTAAGAA+AGG | - | chr6_3:59557306-59557325 | None:intergenic | 40.0% | |
| TTGTGCAGACAAATGGAGAA+AGG | + | chr6_3:59557352-59557371 | Msa0955410:intron | 40.0% | |
| TGCGTATATTTGGATGTTGC+AGG | + | chr6_3:59557724-59557743 | Msa0955410:intron | 40.0% | |
| GTGGACTTGTGCTATATGTT+TGG | + | chr6_3:59557871-59557890 | Msa0955410:CDS | 40.0% | |
| GTGTTTCCTTCCATTAAGGT+GGG | - | chr6_3:59557927-59557946 | None:intergenic | 40.0% | |
| TGTGTTTCCTTCCATTAAGG+TGG | - | chr6_3:59557928-59557947 | None:intergenic | 40.0% | |
| ACCTTAATGGAAGGAAACAC+AGG | + | chr6_3:59557927-59557946 | Msa0955410:CDS | 40.0% | |
| CCTTAATGGAAGGAAACACA+GGG | + | chr6_3:59557928-59557947 | Msa0955410:CDS | 40.0% | |
| CTCATACAAGAACTTGTAGC+AGG | - | chr6_3:59558106-59558125 | None:intergenic | 40.0% | |
| GTACTCTAAATGTCACCATG+AGG | - | chr6_3:59557316-59557335 | None:intergenic | 40.0% | |
| GAGCTTCTTGTGCAGAAAAA+TGG | + | chr6_3:59558178-59558197 | Msa0955410:intron | 40.0% | |
| AAGACTCCAAACAGAGAACA+AGG | + | chr6_3:59558204-59558223 | Msa0955410:CDS | 40.0% | |
| AGACTCCAAACAGAGAACAA+GGG | + | chr6_3:59558205-59558224 | Msa0955410:CDS | 40.0% | |
| GTAGAAACCAAAGGAATCGA+TGG | + | chr6_3:59558524-59558543 | Msa0955410:CDS | 40.0% | |
| GTGGACTTGTGCTTTATGTT+TGG | + | chr6_3:59558613-59558632 | Msa0955410:CDS | 40.0% | |
| TGTGGGAATTCAAGGTTATC+TGG | - | chr6_3:59558652-59558671 | None:intergenic | 40.0% | |
| CCCATTAATGTGGGAATTCA+AGG | - | chr6_3:59558660-59558679 | None:intergenic | 40.0% | |
| TGAATTCCCACATTAATGGG+AGG | + | chr6_3:59558660-59558679 | Msa0955410:CDS | 40.0% | |
| GTGTTTCCTCCCATTAATGT+GGG | - | chr6_3:59558669-59558688 | None:intergenic | 40.0% | |
| TGTGTTTCCTCCCATTAATG+TGG | - | chr6_3:59558670-59558689 | None:intergenic | 40.0% | |
| AGAACCTTTCAGAACCCTTT+AGG | + | chr6_3:59558741-59558760 | Msa0955410:CDS | 40.0% | |
| !! | TCAACCTAAAGGGTTCTGAA+AGG | - | chr6_3:59558748-59558767 | None:intergenic | 40.0% |
| TGACAGGAATATCCTGCAAA+TGG | - | chr6_3:59559320-59559339 | None:intergenic | 40.0% | |
| !!! | GCTGATGATGCATTTTGACT+TGG | - | chr6_3:59559357-59559376 | None:intergenic | 40.0% |
| ACAGCAAAGAGTGACAAATC+TGG | + | chr6_3:59559396-59559415 | Msa0955410:CDS | 40.0% | |
| ACCTTGAATTCCCACCTTAA+AGG | + | chr6_3:59559507-59559526 | Msa0955410:CDS | 40.0% | |
| CCTTGAATTCCCACCTTAAA+GGG | + | chr6_3:59559508-59559527 | Msa0955410:CDS | 40.0% | |
| GAACATCTATCAGTCCAAAG+AGG | + | chr6_3:59559596-59559615 | Msa0955410:CDS | 40.0% | |
| ATTGAAGGGAACAGTAGTGA+TGG | + | chr6_3:59559692-59559711 | Msa0955410:CDS | 40.0% | |
| GACACGGAGCAAAATGTCAT+TGG | - | chr6_3:59555538-59555557 | None:intergenic | 45.0% | |
| ! | GCTCTGAATGGAAAAGGCAA+AGG | - | chr6_3:59555662-59555681 | None:intergenic | 45.0% |
| !! | GCTCAAGCTCTGAATGGAAA+AGG | - | chr6_3:59555668-59555687 | None:intergenic | 45.0% |
| CAAGAGGCCTAGAAAAGAGA+AGG | - | chr6_3:59555866-59555885 | None:intergenic | 45.0% | |
| GTAGCACTTGTGAGACATTG+TGG | - | chr6_3:59556486-59556505 | None:intergenic | 45.0% | |
| GCGAAATAACATTGTCACCG+TGG | - | chr6_3:59556575-59556594 | None:intergenic | 45.0% | |
| TAAGAAGCTCGTCCAAAGTC+CGG | - | chr6_3:59556816-59556835 | None:intergenic | 45.0% | |
| GCTGACTATTTGCGGTTTCA+TGG | - | chr6_3:59556862-59556881 | None:intergenic | 45.0% | |
| TGAAACCGCAAATAGTCAGC+TGG | + | chr6_3:59556862-59556881 | Msa0955410:CDS | 45.0% | |
| GAAACCGCAAATAGTCAGCT+GGG | + | chr6_3:59556863-59556882 | Msa0955410:CDS | 45.0% | |
| AAACCGCAAATAGTCAGCTG+GGG | + | chr6_3:59556864-59556883 | Msa0955410:CDS | 45.0% | |
| AGGGTCTTTGTGCAGACAAA+TGG | + | chr6_3:59557345-59557364 | Msa0955410:intron | 45.0% | |
| TTCCTGCAACCAAGCAAGTA+AGG | + | chr6_3:59557430-59557449 | Msa0955410:intron | 45.0% | |
| TGAATGAGGCCTTACTTGCT+TGG | - | chr6_3:59557442-59557461 | None:intergenic | 45.0% | |
| TTCACTCTCTGCTGTTCCTT+TGG | - | chr6_3:59557789-59557808 | None:intergenic | 45.0% | |
| GAGAAGTTGGAGAAGTTCCT+CGG | + | chr6_3:59557819-59557838 | Msa0955410:CDS | 45.0% | |
| CCCTGTGTTTCCTTCCATTA+AGG | - | chr6_3:59557931-59557950 | None:intergenic | 45.0% | |
| ! | TGCATCCTTTTGCTTCTGCT+GGG | - | chr6_3:59557990-59558009 | None:intergenic | 45.0% |
| CTAAATGTCACCATGAGGCT+GGG | - | chr6_3:59558144-59558163 | None:intergenic | 45.0% | |
| TCTAAATGTCACCATGAGGC+TGG | - | chr6_3:59558145-59558164 | None:intergenic | 45.0% | |
| ATCAATAGCCTCCACATCCT+CGG | - | chr6_3:59558233-59558252 | None:intergenic | 45.0% | |
| TTCCTGCAACCAAGCAAGTA+AGG | + | chr6_3:59557430-59557449 | Msa0955410:intron | 45.0% | |
| ATCCTTACTTGCTTGGTTGC+AGG | - | chr6_3:59558268-59558287 | None:intergenic | 45.0% | |
| ! | CTTTTAGCATGCCTCAACTC+TGG | - | chr6_3:59558347-59558366 | None:intergenic | 45.0% |
| CAGAGTTGAGGCATGCTAAA+AGG | + | chr6_3:59558345-59558364 | Msa0955410:intron | 45.0% | |
| ! | AGAAGGAAGTGCAGAAAGAG+TGG | + | chr6_3:59558594-59558613 | Msa0955410:CDS | 45.0% |
| !! | GGTTCTGAAAGGTTCTTCTG+CGG | - | chr6_3:59558737-59558756 | None:intergenic | 45.0% |
| ! | GCTTCCAAGTGAGGAGTATA+TGG | + | chr6_3:59558805-59558824 | Msa0955410:intron | 45.0% |
| GATGCCATATACTCCTCACT+TGG | - | chr6_3:59558812-59558831 | None:intergenic | 45.0% | |
| TGGCATCTCACATAAATCGG+TGG | + | chr6_3:59558825-59558844 | Msa0955410:intron | 45.0% | |
| TGCAAAATGTCCCTACGCTA+TGG | - | chr6_3:59558890-59558909 | None:intergenic | 45.0% | |
| CACACAAATACAGGACGTGT+GGG | - | chr6_3:59559276-59559295 | None:intergenic | 45.0% | |
| ACACACAAATACAGGACGTG+TGG | - | chr6_3:59559277-59559296 | None:intergenic | 45.0% | |
| !! | GGTGCAATTTTAGGTGTGAC+AGG | - | chr6_3:59559336-59559355 | None:intergenic | 45.0% |
| AAATGCATCATCAGCCACAG+TGG | + | chr6_3:59559362-59559381 | Msa0955410:CDS | 45.0% | |
| TGTTCCTTTCGTTTCCACTG+TGG | - | chr6_3:59559379-59559398 | None:intergenic | 45.0% | |
| ! | AGAAGGAAGTGCAGAAAGAG+TGG | + | chr6_3:59558594-59558613 | Msa0955410:CDS | 45.0% |
| !! | CCCTTTAAGGTGGGAATTCA+AGG | - | chr6_3:59559511-59559530 | None:intergenic | 45.0% |
| TGAATTCCCACCTTAAAGGG+AGG | + | chr6_3:59559511-59559530 | Msa0955410:CDS | 45.0% | |
| !! | GTGTTTCCTCCCTTTAAGGT+GGG | - | chr6_3:59559520-59559539 | None:intergenic | 45.0% |
| ! | TGTGTTTCCTCCCTTTAAGG+TGG | - | chr6_3:59559521-59559540 | None:intergenic | 45.0% |
| ACCTTAAAGGGAGGAAACAC+AGG | + | chr6_3:59559520-59559539 | Msa0955410:CDS | 45.0% | |
| CCTTAAAGGGAGGAAACACA+GGG | + | chr6_3:59559521-59559540 | Msa0955410:CDS | 45.0% | |
| CATCTATCAGTCCAAAGAGG+AGG | + | chr6_3:59559599-59559618 | Msa0955410:CDS | 45.0% | |
| ! | CTTCTGTTTCTCCTCCTCTT+TGG | - | chr6_3:59559613-59559632 | None:intergenic | 45.0% |
| TTCTAGGCCTCTTGTTGCTC+TGG | + | chr6_3:59555872-59555891 | Msa0955410:intron | 50.0% | |
| GGATACACCAGAGCAACAAG+AGG | - | chr6_3:59555882-59555901 | None:intergenic | 50.0% | |
| TGTAGTCGGCCAATGTCACA+TGG | + | chr6_3:59556452-59556471 | Msa0955410:intron | 50.0% | |
| GGCCAATGTCACATGGCATT+GGG | + | chr6_3:59556459-59556478 | Msa0955410:intron | 50.0% | |
| GTCCCAATGCCATGTGACAT+TGG | - | chr6_3:59556464-59556483 | None:intergenic | 50.0% | |
| TGGCTCATCATACCGGACTT+TGG | + | chr6_3:59556801-59556820 | Msa0955410:CDS | 50.0% | |
| AACCGCAAATAGTCAGCTGG+GGG | + | chr6_3:59556865-59556884 | Msa0955410:CDS | 50.0% | |
| AACCCCCAGCTGACTATTTG+CGG | - | chr6_3:59556870-59556889 | None:intergenic | 50.0% | |
| GCTGGGGGTTAAATAGCTTC+TGG | + | chr6_3:59556880-59556899 | Msa0955410:CDS | 50.0% | |
| !! | TGGGTTGATTCCTGTCACAG+TGG | + | chr6_3:59557760-59557779 | Msa0955410:CDS | 50.0% |
| ! | CCTTTGGTTTCCACTGTGAC+AGG | - | chr6_3:59557773-59557792 | None:intergenic | 50.0% |
| CCTGTCACAGTGGAAACCAA+AGG | + | chr6_3:59557770-59557789 | Msa0955410:CDS | 50.0% | |
| ACAGCAGAGAGTGAAAGAGC+TGG | + | chr6_3:59557794-59557813 | Msa0955410:CDS | 50.0% | |
| GAAAGAGCTGGTGGAGAAGT+TGG | + | chr6_3:59557806-59557825 | Msa0955410:CDS | 50.0% | |
| TCCTCGGAGTTCTACACAGA+AGG | + | chr6_3:59557835-59557854 | Msa0955410:CDS | 50.0% | |
| CCTCGGAGTTCTACACAGAA+GGG | + | chr6_3:59557836-59557855 | Msa0955410:CDS | 50.0% | |
| ACCTACCCAGCAGAAGCAAA+AGG | + | chr6_3:59557982-59558001 | Msa0955410:CDS | 50.0% | |
| ! | TCCTTTTGCTTCTGCTGGGT+AGG | - | chr6_3:59557986-59558005 | None:intergenic | 50.0% |
| ! | CTGCATCCTTTTGCTTCTGC+TGG | - | chr6_3:59557991-59558010 | None:intergenic | 50.0% |
| !! | GTCACTGCCATCGATTCCTT+TGG | - | chr6_3:59558534-59558553 | None:intergenic | 50.0% |
| TCTGTAGCGGTAGAACTCTG+AGG | - | chr6_3:59558575-59558594 | None:intergenic | 50.0% | |
| GAGTTCTACCGCTACAGAGA+AGG | + | chr6_3:59558577-59558596 | Msa0955410:CDS | 50.0% | |
| CTGCACTTCCTTCTCTGTAG+CGG | - | chr6_3:59558588-59558607 | None:intergenic | 50.0% | |
| TCAGCCACAGTGGAAACGAA+AGG | + | chr6_3:59559372-59559391 | Msa0955410:CDS | 50.0% | |
| GTGGACTTGTGCTTTGTGCT+CGG | + | chr6_3:59559464-59559483 | Msa0955410:CDS | 50.0% | |
| CCCTGTGTTTCCTCCCTTTA+AGG | - | chr6_3:59559524-59559543 | None:intergenic | 50.0% | |
| ATGTTCACCTTCTGCGAAGC+AGG | - | chr6_3:59559582-59559601 | None:intergenic | 50.0% | |
| ! | GTTGGTAGGTTGCAAGTGGG+AGG | - | chr6_3:59555579-59555598 | None:intergenic | 55.0% |
| CGGCCAATGTCACATGGCAT+TGG | + | chr6_3:59556458-59556477 | Msa0955410:intron | 55.0% | |
| GGCCTTACTTGCTTGGTTGC+AGG | - | chr6_3:59557435-59557454 | None:intergenic | 55.0% | |
| GCAGAGAGTGAAAGAGCTGG+TGG | + | chr6_3:59557797-59557816 | Msa0955410:CDS | 55.0% | |
| CCCTTCTGTGTAGAACTCCG+AGG | - | chr6_3:59557839-59557858 | None:intergenic | 55.0% | |
| ! | AGAAGGGAGTGCAGAGAGAG+TGG | + | chr6_3:59557852-59557871 | Msa0955410:CDS | 55.0% |
| GGAAGGAAACACAGGGTTGC+TGG | + | chr6_3:59557935-59557954 | Msa0955410:CDS | 55.0% | |
| CGGTGCCCTTGTTCTCTGTT+TGG | - | chr6_3:59558213-59558232 | None:intergenic | 55.0% | |
| !! | AACAGAGAACAAGGGCACCG+AGG | + | chr6_3:59558213-59558232 | Msa0955410:CDS | 55.0% |
| ATCGATGGCAGTGACACAGC+TGG | + | chr6_3:59558539-59558558 | Msa0955410:CDS | 55.0% | |
| GAAAGGTTCTTCTGCGGAGC+AGG | - | chr6_3:59558731-59558750 | None:intergenic | 55.0% | |
| GAAGCAACCTGCTTCGCAGA+AGG | + | chr6_3:59559572-59559591 | Msa0955410:CDS | 55.0% | |
| GAGGCTGGGACGTGCAGAAT+TGG | - | chr6_3:59558130-59558149 | None:intergenic | 60.0% | |
| TTCTGCACGTCCCAGCCTCA+TGG | + | chr6_3:59558131-59558150 | Msa0955410:intron | 60.0% | |
| !! | GAACAAGGGCACCGAGGATG+TGG | + | chr6_3:59558219-59558238 | Msa0955410:CDS | 60.0% |
| GATGGCAGTGACACAGCTGG+TGG | + | chr6_3:59558542-59558561 | Msa0955410:CDS | 60.0% | |
| CAGTGACACAGCTGGTGGAG+AGG | + | chr6_3:59558547-59558566 | Msa0955410:CDS | 60.0% | |
| !! | CAAGGGCACCGAGGATGTGG+AGG | + | chr6_3:59558222-59558241 | Msa0955410:CDS | 65.0% |
| ! | CACTCGCGCGCGCGCGCACT+TGG | - | chr6_3:59558394-59558413 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 59555444 | 59559737 | 59555444 | ID=Msa0955410;Name=Msa0955410 |
| chr6_3 | mRNA | 59555444 | 59559737 | 59555444 | ID=Msa0955410-mRNA-1;Parent=Msa0955410;Name=Msa0955410-mRNA-1;_AED=0.31;_eAED=0.32;_QI=223|0.6|0.54|0.90|0.9|0.81|11|0|577 |
| chr6_3 | exon | 59555444 | 59555494 | 59555444 | ID=Msa0955410-mRNA-1:exon:11767;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59555532 | 59555759 | 59555532 | ID=Msa0955410-mRNA-1:exon:11768;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59555878 | 59555904 | 59555878 | ID=Msa0955410-mRNA-1:exon:11769;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59556024 | 59556146 | 59556024 | ID=Msa0955410-mRNA-1:exon:11770;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59556761 | 59557001 | 59556761 | ID=Msa0955410-mRNA-1:exon:11771;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59557157 | 59557228 | 59557157 | ID=Msa0955410-mRNA-1:exon:11772;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59557360 | 59557446 | 59557360 | ID=Msa0955410-mRNA-1:exon:11773;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59557746 | 59558060 | 59557746 | ID=Msa0955410-mRNA-1:exon:11774;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59558193 | 59558279 | 59558193 | ID=Msa0955410-mRNA-1:exon:11775;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59558476 | 59558790 | 59558476 | ID=Msa0955410-mRNA-1:exon:11776;Parent=Msa0955410-mRNA-1 |
| chr6_3 | exon | 59559327 | 59559737 | 59559327 | ID=Msa0955410-mRNA-1:exon:11777;Parent=Msa0955410-mRNA-1 |
| chr6_3 | five_prime_UTR | 59555444 | 59555494 | 59555444 | ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1 |
| chr6_3 | five_prime_UTR | 59555532 | 59555703 | 59555532 | ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59555704 | 59555759 | 59555704 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59555878 | 59555904 | 59555878 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59556024 | 59556146 | 59556024 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59556761 | 59557001 | 59556761 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59557157 | 59557228 | 59557157 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59557360 | 59557446 | 59557360 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59557746 | 59558060 | 59557746 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59558193 | 59558279 | 59558193 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59558476 | 59558790 | 59558476 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| chr6_3 | CDS | 59559327 | 59559737 | 59559327 | ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
