AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0955410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955410 MtrunA17_Chr4g0049651 68.470 536 125 9 1 514 1 514 0.0 694
Msa0955410 MtrunA17_Chr4g0049651 63.127 339 81 9 272 573 141 472 9.76e-106 328
Msa0955410 MtrunA17_Chr4g0049671 54.153 602 195 16 1 570 1 553 0.0 541
Msa0955410 MtrunA17_Chr4g0049701 67.692 260 77 3 20 274 17 274 2.06e-121 361
Msa0955410 MtrunA17_Chr4g0049701 63.399 153 46 4 289 440 153 296 3.75e-50 176
Msa0955410 MtrunA17_Chr4g0049701 66.667 75 24 1 449 522 205 279 9.13e-21 93.6
Msa0955410 MtrunA17_Chr4g0049681 68.398 231 65 5 212 441 20 243 4.36e-95 291
Msa0955410 MtrunA17_Chr4g0049681 48.636 220 79 5 342 530 11 227 6.23e-45 160
Msa0955410 MtrunA17_Chr4g0049681 60.584 137 44 3 156 286 95 227 2.46e-41 150
Msa0955410 MtrunA17_Chr4g0049681 65.556 90 31 0 441 530 3 92 5.94e-29 116
Msa0955410 MtrunA17_Chr4g0060581 40.411 146 79 2 6 146 11 153 2.05e-31 120
Msa0955410 MtrunA17_Chr5g0416561 43.165 139 69 3 18 146 77 215 1.55e-25 105
Msa0955410 MtrunA17_Chr3g0097141 34.074 135 78 2 20 146 17 148 1.89e-22 94.4
Msa0955410 MtrunA17_Chr4g0049691 47.788 113 15 3 1 69 1 113 3.10e-22 92.0
Msa0955410 MtrunA17_Chr5g0443431 33.083 133 81 2 20 146 17 147 1.04e-20 89.4
Msa0955410 MtrunA17_Chr8g0386221 35.000 100 62 1 1 100 1 97 4.15e-17 77.4
Msa0955410 MtrunA17_Chr5g0427761 24.542 273 167 7 1 270 1 237 4.20e-17 84.0
Msa0955410 MtrunA17_Chr3g0132031 37.000 100 60 1 1 100 1 97 1.35e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955410 AT1G69700.1 40.805 174 85 7 7 168 14 181 5.54e-31 119
Msa0955410 AT1G74520.1 41.958 143 75 3 17 154 19 158 1.25e-29 115
Msa0955410 AT1G74520.2 41.958 143 75 3 17 154 19 158 1.25e-29 115
Msa0955410 AT5G62490.1 35.374 147 87 3 11 154 13 154 6.69e-22 93.2
Msa0955410 AT2G42820.1 36.111 108 65 1 6 113 3 106 4.84e-19 84.7
Msa0955410 AT5G50720.1 36.111 108 62 1 7 107 4 111 2.73e-18 81.3
Msa0955410 AT4G24960.1 34.000 100 63 1 1 100 1 97 1.84e-16 76.6
Msa0955410 AT4G24960.3 33.766 77 51 0 24 100 2 78 1.50e-12 65.5

Find 136 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTGTGTTTCCTCCCTTTA+AGG 0.046055 6_3:-59559521 None:intergenic
GACTTAATTTCCCACCTTAA+TGG 0.204603 6_3:+59557914 Msa0955410:CDS
ACAGACTTTACATATTAATT+TGG 0.211897 6_3:-59558774 None:intergenic
ACCTTGAATTCCCACCTTAA+AGG 0.229261 6_3:+59559507 Msa0955410:CDS
CCCTGTGTTTCCTTCCATTA+AGG 0.232179 6_3:-59557928 None:intergenic
CTTCTGTTTCTCCTCCTCTT+TGG 0.235953 6_3:-59559610 None:intergenic
TGAATTCGGCTTGTAGGATT+TGG 0.237722 6_3:+59555445 Msa0955410:five_prime_UTR
CGGTGCCCTTGTTCTCTGTT+TGG 0.263867 6_3:-59558210 None:intergenic
GATTCCTTTGGTTTCTACTA+TGG 0.266454 6_3:-59558519 None:intergenic
AGCTTGAATTTGGTAGTAAA+TGG 0.271198 6_3:+59555685 Msa0955410:exon
AGAACCTTTCAGAACCCTTT+AGG 0.273993 6_3:+59558741 Msa0955410:CDS
TTCACTCTCTGCTGTTCCTT+TGG 0.274660 6_3:-59557786 None:intergenic
TCAGAGCTTGAGCTTGAATT+TGG 0.277480 6_3:+59555675 Msa0955410:five_prime_UTR
ACCTTGAATTCCCACATTAA+TGG 0.284729 6_3:+59558656 Msa0955410:CDS
TTCTTCATGGTTTCTCATAC+AGG 0.292413 6_3:+59555709 Msa0955410:CDS
CCCTTTAAGGTGGGAATTCA+AGG 0.294789 6_3:-59559508 None:intergenic
GGCCTTACTTGCTTGGTTGC+AGG 0.296529 6_3:-59557432 None:intergenic
ATCCTTACTTGCTTGGTTGC+AGG 0.300313 6_3:-59558265 None:intergenic
GAATTCGGCTTGTAGGATTT+GGG 0.303627 6_3:+59555446 Msa0955410:five_prime_UTR
GAAAGAGCTGGTGGAGAAGT+TGG 0.315787 6_3:+59557806 Msa0955410:CDS
CCTTGAATTCCCACATTAAT+GGG 0.319670 6_3:+59558657 Msa0955410:CDS
CGATGATAAAGAAATGTTAA+AGG 0.331489 6_3:+59557207 Msa0955410:CDS
CCTTGAATTCCCACCTTAAA+GGG 0.333471 6_3:+59559508 Msa0955410:CDS
GCTGACTATTTGCGGTTTCA+TGG 0.335387 6_3:-59556859 None:intergenic
TTCTAGGCCTCTTGTTGCTC+TGG 0.337704 6_3:+59555872 Msa0955410:intron
TGTGGGAATTCAAGGTTATC+TGG 0.341223 6_3:-59558649 None:intergenic
TCATTTGTCACTTCTGCATC+AGG 0.350141 6_3:-59557172 None:intergenic
GCTAGCAATGAGTTTCTCTA+AGG 0.350536 6_3:-59556976 None:intergenic
CTAAGCTAATGATAATCTTC+TGG 0.358270 6_3:+59556781 Msa0955410:CDS
GGTAGTAAATGGCTTCTTCA+TGG 0.362420 6_3:+59555696 Msa0955410:exon
CCCATTAATGTGGGAATTCA+AGG 0.362628 6_3:-59558657 None:intergenic
CTAAGGATTTGATCTCATAT+TGG 0.368288 6_3:+59556068 Msa0955410:CDS
GTCACTGCCATCGATTCCTT+TGG 0.369658 6_3:-59558531 None:intergenic
ATATTCAAAGAGGTAAATTA+AGG 0.374191 6_3:-59556101 None:intergenic
TTGGAATTAATCAACCTAAA+GGG 0.375665 6_3:-59558755 None:intergenic
CCTTTGGTTTCCACTGTGAC+AGG 0.391417 6_3:-59557770 None:intergenic
AAATAATAAAGTAGTTTAGT+TGG 0.392113 6_3:-59555594 None:intergenic
GGAAGGAAACACAGGGTTGC+TGG 0.399734 6_3:+59557935 Msa0955410:CDS
GAAAGGTTCTTCTGCGGAGC+AGG 0.422036 6_3:-59558728 None:intergenic
AACAGTAGTGATGGATGATA+AGG 0.432339 6_3:+59559701 Msa0955410:CDS
TTTGGAATTAATCAACCTAA+AGG 0.440188 6_3:-59558756 None:intergenic
TGAATGAGGCCTTACTTGCT+TGG 0.443918 6_3:-59557439 None:intergenic
TGAATGAATCCTTACTTGCT+TGG 0.445111 6_3:-59558272 None:intergenic
TGGCTCATCATACCGGACTT+TGG 0.448937 6_3:+59556801 Msa0955410:CDS
AATAAAGTAGTTTAGTTGGT+AGG 0.449509 6_3:-59555590 None:intergenic
TGACTCATATGCTGAAACTA+AGG 0.450349 6_3:+59556051 Msa0955410:CDS
ATGTTCACCTTCTGCGAAGC+AGG 0.458818 6_3:-59559579 None:intergenic
CATACCATGCAAAATGATGA+AGG 0.459168 6_3:-59555742 None:intergenic
GTGGACTTGTGCTTTATGTT+TGG 0.459600 6_3:+59558613 Msa0955410:CDS
GGAGCTAATATTCTTAAGAA+AGG 0.463915 6_3:+59559669 Msa0955410:CDS
GTCAGTTTCAATTGCTTGTA+CGG 0.466858 6_3:-59556032 None:intergenic
TATTCTTAAGAAAGGATTGA+AGG 0.469642 6_3:+59559677 Msa0955410:CDS
AGGGTCTTTGTGCAGACAAA+TGG 0.469962 6_3:+59557345 Msa0955410:intron
GAGAGATATATGAAAGAGAA+TGG 0.473137 6_3:+59556945 Msa0955410:CDS
GAACAAGGGCACCGAGGATG+TGG 0.473925 6_3:+59558219 Msa0955410:CDS
AAAGAATTTACCATAGAAGA+AGG 0.474141 6_3:-59556135 None:intergenic
GTGGACTTGTGCTATATGTT+TGG 0.475777 6_3:+59557871 Msa0955410:CDS
AATGGAAAAGGCAAAGGAAA+AGG 0.477497 6_3:-59555653 None:intergenic
ACCTTAAAGGGAGGAAACAC+AGG 0.478853 6_3:+59559520 Msa0955410:CDS
ATTCAAGCTCAAGCTCTGAA+TGG 0.481661 6_3:-59555671 None:intergenic
ACAGCAAAGAGTGACAAATC+TGG 0.484031 6_3:+59559396 Msa0955410:CDS
TGAAACCGCAAATAGTCAGC+TGG 0.488233 6_3:+59556862 Msa0955410:CDS
GTGTTTCCTCCCTTTAAGGT+GGG 0.490716 6_3:-59559517 None:intergenic
GCTCAAGCTCTGAATGGAAA+AGG 0.492643 6_3:-59555665 None:intergenic
TGTGTTTCCTCCCATTAATG+TGG 0.493651 6_3:-59558667 None:intergenic
TAAGAAGCTCGTCCAAAGTC+CGG 0.504580 6_3:-59556813 None:intergenic
ACAGTAGTGATGGATGATAA+GGG 0.505518 6_3:+59559702 Msa0955410:CDS
TGTGTTTCCTCCCTTTAAGG+TGG 0.506534 6_3:-59559518 None:intergenic
ATCAATAGCCTCCACATCCT+CGG 0.513504 6_3:-59558230 None:intergenic
ATTAGCTCCACTCTTAACAT+TGG 0.515615 6_3:-59559655 None:intergenic
CTTTAACATTTCTTTATCAT+CGG 0.517051 6_3:-59557206 None:intergenic
ATTCTTAAGAAAGGATTGAA+GGG 0.518639 6_3:+59559678 Msa0955410:CDS
TTCAATTCCAATGTTAAGAG+TGG 0.520475 6_3:+59559648 Msa0955410:CDS
AATCTTCTGGCTCATCATAC+CGG 0.523416 6_3:+59556794 Msa0955410:CDS
AGAAGGAAGTGCAGAAAGAG+TGG 0.523749 6_3:+59558594 Msa0955410:CDS
GACACGGAGCAAAATGTCAT+TGG 0.524996 6_3:-59555535 None:intergenic
ATTGAAGGGAACAGTAGTGA+TGG 0.528979 6_3:+59559692 Msa0955410:CDS
AATTCGGCTTGTAGGATTTG+GGG 0.529316 6_3:+59555447 Msa0955410:five_prime_UTR
GAAACCGCAAATAGTCAGCT+GGG 0.529318 6_3:+59556863 Msa0955410:CDS
TCCTCGGAGTTCTACACAGA+AGG 0.530592 6_3:+59557835 Msa0955410:CDS
TGTGTTTCCTTCCATTAAGG+TGG 0.531895 6_3:-59557925 None:intergenic
AGAAGGGAGTGCAGAGAGAG+TGG 0.533062 6_3:+59557852 Msa0955410:CDS
TTGACATCAGGTTTCAACTC+TGG 0.534511 6_3:+59556751 Msa0955410:intron
TAAATAGCTTCTGGAAGAAG+TGG 0.534630 6_3:+59556889 Msa0955410:CDS
ACCTACCCAGCAGAAGCAAA+AGG 0.535322 6_3:+59557982 Msa0955410:CDS
GTGTTTCCTCCCATTAATGT+GGG 0.538572 6_3:-59558666 None:intergenic
GTTGGTAGGTTGCAAGTGGG+AGG 0.540862 6_3:-59555576 None:intergenic
TAATTTCCCACCTTAATGGA+AGG 0.543554 6_3:+59557918 Msa0955410:CDS
AGAAGGAAGTGCAGAAAGAG+TGG 0.545798 6_3:+59559445 Msa0955410:CDS
TTTAGTTGGTAGGTTGCAAG+TGG 0.547642 6_3:-59555580 None:intergenic
ATTATCATTAGCTTAGTGTA+CGG 0.553564 6_3:-59556774 None:intergenic
TCTTAAGAGTTCTACACAGA+AGG 0.554349 6_3:+59559428 Msa0955410:CDS
GTGTTTCCTTCCATTAAGGT+GGG 0.556051 6_3:-59557924 None:intergenic
GAGTTCTACCGCTACAGAGA+AGG 0.557049 6_3:+59558577 Msa0955410:CDS
ATCGATGGCAGTGACACAGC+TGG 0.560659 6_3:+59558539 Msa0955410:CDS
AAGACTCCAAACAGAGAACA+AGG 0.564033 6_3:+59558204 Msa0955410:CDS
GTGGACTTGTGCTTTGTGCT+CGG 0.565292 6_3:+59559464 Msa0955410:CDS
ACCTTAATGGAAGGAAACAC+AGG 0.566703 6_3:+59557927 Msa0955410:CDS
TTGTGCAGACAAATGGAGAA+AGG 0.568069 6_3:+59557352 Msa0955410:intron
AGAGAAACTCATTGCTAGCA+AGG 0.570547 6_3:+59556980 Msa0955410:CDS
GAAGCAACCTGCTTCGCAGA+AGG 0.574291 6_3:+59559572 Msa0955410:CDS
GCAGAGAGTGAAAGAGCTGG+TGG 0.576755 6_3:+59557797 Msa0955410:CDS
CTGCACTTCCTTCTCTGTAG+CGG 0.591044 6_3:-59558585 None:intergenic
GTAGAAACCAAAGGAATCGA+TGG 0.600338 6_3:+59558524 Msa0955410:CDS
CAAGGGCACCGAGGATGTGG+AGG 0.603207 6_3:+59558222 Msa0955410:CDS
GAGAAGTTGGAGAAGTTCCT+CGG 0.603517 6_3:+59557819 Msa0955410:CDS
TGGGTTGATTCCTGTCACAG+TGG 0.604211 6_3:+59557760 Msa0955410:CDS
ACAGCAGAGAGTGAAAGAGC+TGG 0.604386 6_3:+59557794 Msa0955410:CDS
TCAACCTAAAGGGTTCTGAA+AGG 0.610088 6_3:-59558745 None:intergenic
GATGGCAGTGACACAGCTGG+TGG 0.610562 6_3:+59558542 Msa0955410:CDS
CAGTGACACAGCTGGTGGAG+AGG 0.620558 6_3:+59558547 Msa0955410:CDS
TGATAAAAGCATATTCAAAG+AGG 0.621411 6_3:-59556111 None:intergenic
TTAGTTGGTAGGTTGCAAGT+GGG 0.625200 6_3:-59555579 None:intergenic
GCTCTGAATGGAAAAGGCAA+AGG 0.636512 6_3:-59555659 None:intergenic
TGAATTCCCACATTAATGGG+AGG 0.637945 6_3:+59558660 Msa0955410:CDS
CCTCGGAGTTCTACACAGAA+GGG 0.638306 6_3:+59557836 Msa0955410:CDS
AAACCGCAAATAGTCAGCTG+GGG 0.642341 6_3:+59556864 Msa0955410:CDS
TATTGTAGAACACAATGTGT+AGG 0.642645 6_3:+59557149 Msa0955410:intron
TGAATTCCCACCTTAAAGGG+AGG 0.644369 6_3:+59559511 Msa0955410:CDS
CATCTATCAGTCCAAAGAGG+AGG 0.649279 6_3:+59559599 Msa0955410:CDS
GGTTCTGAAAGGTTCTTCTG+CGG 0.657548 6_3:-59558734 None:intergenic
TGTTCCTTTCGTTTCCACTG+TGG 0.658741 6_3:-59559376 None:intergenic
TCAGCCACAGTGGAAACGAA+AGG 0.659859 6_3:+59559372 Msa0955410:CDS
AAATGCATCATCAGCCACAG+TGG 0.664078 6_3:+59559362 Msa0955410:CDS
CCTGTCACAGTGGAAACCAA+AGG 0.667906 6_3:+59557770 Msa0955410:CDS
GGATACACCAGAGCAACAAG+AGG 0.670998 6_3:-59555879 None:intergenic
TCAACCATAGTAGAAACCAA+AGG 0.674077 6_3:+59558515 Msa0955410:CDS
CCTTAATGGAAGGAAACACA+GGG 0.683958 6_3:+59557928 Msa0955410:CDS
AACCGCAAATAGTCAGCTGG+GGG 0.687491 6_3:+59556865 Msa0955410:CDS
CCTTAAAGGGAGGAAACACA+GGG 0.688692 6_3:+59559521 Msa0955410:CDS
TCTGTAGCGGTAGAACTCTG+AGG 0.692705 6_3:-59558572 None:intergenic
GAACATCTATCAGTCCAAAG+AGG 0.699297 6_3:+59559596 Msa0955410:CDS
AGACTCCAAACAGAGAACAA+GGG 0.699952 6_3:+59558205 Msa0955410:CDS
AACAGAGAACAAGGGCACCG+AGG 0.716455 6_3:+59558213 Msa0955410:CDS
CCCTTCTGTGTAGAACTCCG+AGG 0.719311 6_3:-59557836 None:intergenic
GAAAATAAGATATACCGACA+CGG 0.734851 6_3:-59555551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAAAGTAGTTTAGT+TGG - chr6_3:59555597-59555616 None:intergenic 15.0%
!!! TAAATTTTTAGTAGAGATTA+AGG + chr6_3:59556699-59556718 Msa0955410:intron 15.0%
!! TTTATTCTTCCAATTAAATT+GGG + chr6_3:59557674-59557693 Msa0955410:intron 15.0%
!! TGACAAATAATTATAACAAA+AGG + chr6_3:59559026-59559045 Msa0955410:intron 15.0%
!! TGTCAAAACAATAATGTAAA+AGG - chr6_3:59555952-59555971 None:intergenic 20.0%
!!! TTTTTTGTTTTTTGCGATTA+TGG + chr6_3:59555990-59556009 Msa0955410:intron 20.0%
!! ATATTCAAAGAGGTAAATTA+AGG - chr6_3:59556104-59556123 None:intergenic 20.0%
!! ATAATAGTGCATTTATGTAT+TGG + chr6_3:59556176-59556195 Msa0955410:intron 20.0%
!! TTTCATAAATGATCAATAGA+TGG - chr6_3:59556239-59556258 None:intergenic 20.0%
!! TAAGGTTCACTTATTAAAAT+TGG + chr6_3:59556282-59556301 Msa0955410:intron 20.0%
!! TTAGCAAGTAATAAATAAGT+AGG - chr6_3:59556550-59556569 None:intergenic 20.0%
!! CTTTAACATTTCTTTATCAT+CGG - chr6_3:59557209-59557228 None:intergenic 20.0%
!!! ACATTTTCAACATATATCTA+TGG - chr6_3:59557645-59557664 None:intergenic 20.0%
!! GTTTATTCTTCCAATTAAAT+TGG + chr6_3:59557673-59557692 Msa0955410:intron 20.0%
!!! TTGCAGGATATAATTTTTAT+TGG + chr6_3:59557740-59557759 Msa0955410:intron 20.0%
!!! TGCAGGATATAATTTTTATT+GGG + chr6_3:59557741-59557760 Msa0955410:intron 20.0%
!!! TTTTTTATTATCAGTAGCTA+TGG - chr6_3:59558032-59558051 None:intergenic 20.0%
!! TGATAATAAAAAAATACCCA+AGG + chr6_3:59558039-59558058 Msa0955410:CDS 20.0%
!!! TTTAAAATAGAAATCTTCCA+AGG + chr6_3:59558303-59558322 Msa0955410:intron 20.0%
!!! CTAAAATTTTAATTTGTCCT+TGG - chr6_3:59558323-59558342 None:intergenic 20.0%
!! ACAGACTTTACATATTAATT+TGG - chr6_3:59558777-59558796 None:intergenic 20.0%
!! AAAATGCTATCAAAACTAAT+AGG - chr6_3:59559188-59559207 None:intergenic 20.0%
!! TAGTAAGTCATATATGTAAT+TGG - chr6_3:59559247-59559266 None:intergenic 20.0%
! GTTAAATACATACTTCAAGT+AGG - chr6_3:59555501-59555520 None:intergenic 25.0%
! AATAAAGTAGTTTAGTTGGT+AGG - chr6_3:59555593-59555612 None:intergenic 25.0%
! AAGATGAAGAAAATAAAGGA+GGG - chr6_3:59555786-59555805 None:intergenic 25.0%
! AAAGATGAAGAAAATAAAGG+AGG - chr6_3:59555787-59555806 None:intergenic 25.0%
! GAGAAAGATGAAGAAAATAA+AGG - chr6_3:59555790-59555809 None:intergenic 25.0%
! AAGAGAAGGAAAATAAAGAA+GGG - chr6_3:59555852-59555871 None:intergenic 25.0%
! AAAGAGAAGGAAAATAAAGA+AGG - chr6_3:59555853-59555872 None:intergenic 25.0%
!! TTATTTTCCTTCTCTTTTCT+AGG + chr6_3:59555856-59555875 Msa0955410:intron 25.0%
!!! TTTTTTGCGATTATGGTTTT+TGG + chr6_3:59555997-59556016 Msa0955410:intron 25.0%
!! TGATAAAAGCATATTCAAAG+AGG - chr6_3:59556114-59556133 None:intergenic 25.0%
! AAAGAATTTACCATAGAAGA+AGG - chr6_3:59556138-59556157 None:intergenic 25.0%
! TAAATGCACTATTATACTTG+TGG - chr6_3:59556171-59556190 None:intergenic 25.0%
! ATAAATGATCAATAGATGGA+GGG - chr6_3:59556235-59556254 None:intergenic 25.0%
! AAACATAAGTGAAAGAAGTA+AGG + chr6_3:59556264-59556283 Msa0955410:intron 25.0%
! GATTTACTCCATTTATCTAT+GGG - chr6_3:59556508-59556527 None:intergenic 25.0%
! AGATTTACTCCATTTATCTA+TGG - chr6_3:59556509-59556528 None:intergenic 25.0%
! ATGATTCATAGAAATATTGC+CGG - chr6_3:59556606-59556625 None:intergenic 25.0%
!! ATTATCATTAGCTTAGTGTA+CGG - chr6_3:59556777-59556796 None:intergenic 25.0%
!! TGACATTTTTATCCTATGTT+GGG - chr6_3:59557051-59557070 None:intergenic 25.0%
!! TTGACATTTTTATCCTATGT+TGG - chr6_3:59557052-59557071 None:intergenic 25.0%
!! ACAACTCTAGAAAAATTATG+TGG + chr6_3:59557078-59557097 Msa0955410:intron 25.0%
!! CAACTCTAGAAAAATTATGT+GGG + chr6_3:59557079-59557098 Msa0955410:intron 25.0%
! CGATGATAAAGAAATGTTAA+AGG + chr6_3:59557207-59557226 Msa0955410:CDS 25.0%
! TTTGAGTGAATATATGAATG+AGG - chr6_3:59557456-59557475 None:intergenic 25.0%
!!! CTAAAACTTTAATTTGTCCT+TGG - chr6_3:59557490-59557509 None:intergenic 25.0%
! TTATTACTCATGCATACAAA+GGG - chr6_3:59557619-59557638 None:intergenic 25.0%
! ATTATTACTCATGCATACAA+AGG - chr6_3:59557620-59557639 None:intergenic 25.0%
! TACAAACAACCCAATTTAAT+TGG - chr6_3:59557686-59557705 None:intergenic 25.0%
!!! TGAATTTGTTGAATTGTTGT+TGG + chr6_3:59558447-59558466 Msa0955410:intron 25.0%
! TTGGAATTAATCAACCTAAA+GGG - chr6_3:59558758-59558777 None:intergenic 25.0%
!! TTTGGAATTAATCAACCTAA+AGG - chr6_3:59558759-59558778 None:intergenic 25.0%
!! ACTTGTCTAAAATTCAAAGT+TGG + chr6_3:59558852-59558871 Msa0955410:intron 25.0%
! ATGAAAGTTGAAAAGCAAAT+TGG + chr6_3:59558909-59558928 Msa0955410:intron 25.0%
! TGAAAGTTGAAAAGCAAATT+GGG + chr6_3:59558910-59558929 Msa0955410:intron 25.0%
!! TTTAAGAATCAGCAATGTTT+TGG - chr6_3:59558967-59558986 None:intergenic 25.0%
!!! AAACATTGCTGATTCTTAAA+TGG + chr6_3:59558967-59558986 Msa0955410:intron 25.0%
!! TTAGTTTGAGTATTGCTATT+TGG + chr6_3:59559001-59559020 Msa0955410:intron 25.0%
! TATCAAAACTAATAGGAGAA+TGG - chr6_3:59559181-59559200 None:intergenic 25.0%
! CAATATATACACACAAATAC+AGG - chr6_3:59559285-59559304 None:intergenic 25.0%
! TATTCTTAAGAAAGGATTGA+AGG + chr6_3:59559677-59559696 Msa0955410:CDS 25.0%
! ATTCTTAAGAAAGGATTGAA+GGG + chr6_3:59559678-59559697 Msa0955410:CDS 25.0%
GAAAATAAGATATACCGACA+CGG - chr6_3:59555554-59555573 None:intergenic 30.0%
! AGCTTGAATTTGGTAGTAAA+TGG + chr6_3:59555685-59555704 Msa0955410:exon 30.0%
CTAAGGATTTGATCTCATAT+TGG + chr6_3:59556068-59556087 Msa0955410:CDS 30.0%
! CTTTTATCAACCTTCTTCTA+TGG + chr6_3:59556125-59556144 Msa0955410:CDS 30.0%
ATAGTGCATTTATGTATTGG+TGG + chr6_3:59556179-59556198 Msa0955410:intron 30.0%
CATAAATGATCAATAGATGG+AGG - chr6_3:59556236-59556255 None:intergenic 30.0%
GGTTCACTTATTAAAATTGG+CGG + chr6_3:59556285-59556304 Msa0955410:intron 30.0%
TCTCGTAAATGGATAATTAC+CGG + chr6_3:59556335-59556354 Msa0955410:intron 30.0%
! TTTATTACTTGCTAAAGCCA+CGG + chr6_3:59556555-59556574 Msa0955410:intron 30.0%
!! TGTTATTTCGCCAAATTAAC+CGG + chr6_3:59556584-59556603 Msa0955410:intron 30.0%
! AGAAATATTGCCGGTTAATT+TGG - chr6_3:59556597-59556616 None:intergenic 30.0%
TCAGAGTAAAAAAACGAACT+TGG - chr6_3:59556629-59556648 None:intergenic 30.0%
GATTAAGATCAAGTTCAATC+AGG - chr6_3:59556661-59556680 None:intergenic 30.0%
AAGTTCAATCAGGTACTAAA+AGG - chr6_3:59556733-59556752 None:intergenic 30.0%
CTAAGCTAATGATAATCTTC+TGG + chr6_3:59556781-59556800 Msa0955410:CDS 30.0%
GAGAGATATATGAAAGAGAA+TGG + chr6_3:59556945-59556964 Msa0955410:CDS 30.0%
GCATTATGCTGCATAAAAAT+TGG + chr6_3:59557017-59557036 Msa0955410:intron 30.0%
TATTGTAGAACACAATGTGT+AGG + chr6_3:59557149-59557168 Msa0955410:intron 30.0%
! TGATATCTTTTTGCTCTGTT+TGG - chr6_3:59557380-59557399 None:intergenic 30.0%
ACAGAGCAAAAAGATATCAA+AGG + chr6_3:59557381-59557400 Msa0955410:CDS 30.0%
GCAAAAAGATATCAAAGGTT+TGG + chr6_3:59557386-59557405 Msa0955410:CDS 30.0%
!! AAACTTTAATTTGTCCTTGG+AGG - chr6_3:59557487-59557506 None:intergenic 30.0%
ACGTCATTTGTGAAATGTTT+AGG + chr6_3:59557527-59557546 Msa0955410:intron 30.0%
TTAGTCTCTATGCGTATATT+TGG + chr6_3:59557714-59557733 Msa0955410:intron 30.0%
TCACATCAAAACTTTACCTT+GGG - chr6_3:59558058-59558077 None:intergenic 30.0%
TTCACATCAAAACTTTACCT+TGG - chr6_3:59558059-59558078 None:intergenic 30.0%
! AAAATTTTAGACCAGAGTTG+AGG + chr6_3:59558333-59558352 Msa0955410:intron 30.0%
! AGGTCATTTGTGAAAGTTTT+AGG + chr6_3:59558365-59558384 Msa0955410:intron 30.0%
ATATGGCATCTCACATAAAT+CGG + chr6_3:59558822-59558841 Msa0955410:intron 30.0%
GAAAGTTGAAAAGCAAATTG+GGG + chr6_3:59558911-59558930 Msa0955410:intron 30.0%
! CACTTCGTGTAAATGTTTTA+AGG + chr6_3:59559056-59559075 Msa0955410:intron 30.0%
TTAATACAAACACGCAAGAT+TGG - chr6_3:59559130-59559149 None:intergenic 30.0%
!!! ATCCTATTTTTACCATTTGC+AGG + chr6_3:59559305-59559324 Msa0955410:intron 30.0%
ATCCTGCAAATGGTAAAAAT+AGG - chr6_3:59559310-59559329 None:intergenic 30.0%
!!! TTTTGACTTGGTGCAATTTT+AGG - chr6_3:59559345-59559364 None:intergenic 30.0%
TTCAATTCCAATGTTAAGAG+TGG + chr6_3:59559648-59559667 Msa0955410:CDS 30.0%
GGAGCTAATATTCTTAAGAA+AGG + chr6_3:59559669-59559688 Msa0955410:CDS 30.0%
AGAAGCAGAAAAAACAAGAG+AGG + chr6_3:59555473-59555492 Msa0955410:five_prime_UTR 35.0%
GAAGCAGAAAAAACAAGAGA+GGG + chr6_3:59555474-59555493 Msa0955410:five_prime_UTR 35.0%
ATGTATTTAACATGCGAACG+AGG + chr6_3:59555510-59555529 Msa0955410:intron 35.0%
TGTATTTAACATGCGAACGA+GGG + chr6_3:59555511-59555530 Msa0955410:intron 35.0%
AATGGAAAAGGCAAAGGAAA+AGG - chr6_3:59555656-59555675 None:intergenic 35.0%
TTCTTCATGGTTTCTCATAC+AGG + chr6_3:59555709-59555728 Msa0955410:CDS 35.0%
! AATGCCTTCATCATTTTGCA+TGG + chr6_3:59555738-59555757 Msa0955410:CDS 35.0%
CATACCATGCAAAATGATGA+AGG - chr6_3:59555745-59555764 None:intergenic 35.0%
TCCTATGTAAGTTCTTGATC+TGG + chr6_3:59555899-59555918 Msa0955410:intron 35.0%
GTCAGTTTCAATTGCTTGTA+CGG - chr6_3:59556035-59556054 None:intergenic 35.0%
TGACTCATATGCTGAAACTA+AGG + chr6_3:59556051-59556070 Msa0955410:CDS 35.0%
AAATGGATAATTACCGGAAG+AGG + chr6_3:59556341-59556360 Msa0955410:intron 35.0%
AATGGATAATTACCGGAAGA+GGG + chr6_3:59556342-59556361 Msa0955410:intron 35.0%
ATCATTTATCTACCCTCTTC+CGG - chr6_3:59556357-59556376 None:intergenic 35.0%
TGATAGCACTTGTGTAATTG+AGG + chr6_3:59556373-59556392 Msa0955410:intron 35.0%
! AACTGATACGTGTCACATTT+TGG - chr6_3:59556425-59556444 None:intergenic 35.0%
ATCAGTTGTCACATTGTAGT+CGG + chr6_3:59556438-59556457 Msa0955410:intron 35.0%
AAGTGCTACCCATAGATAAA+TGG + chr6_3:59556497-59556516 Msa0955410:intron 35.0%
! TAAATAGCTTCTGGAAGAAG+TGG + chr6_3:59556889-59556908 Msa0955410:CDS 35.0%
!! GGGTGTTTTTACATCTACAT+CGG + chr6_3:59557099-59557118 Msa0955410:intron 35.0%
TTGACTCATAGAAGAACTAG+TGG - chr6_3:59557278-59557297 None:intergenic 35.0%
TTCTACCTTTCTTAGTCTCA+TGG + chr6_3:59557298-59557317 Msa0955410:intron 35.0%
! ATTTAGAGTACTAACGAGAG+AGG + chr6_3:59557325-59557344 Msa0955410:intron 35.0%
! TTTAGAGTACTAACGAGAGA+GGG + chr6_3:59557326-59557345 Msa0955410:intron 35.0%
CTCAAAATAGAAATCCTCCA+AGG + chr6_3:59557470-59557489 Msa0955410:intron 35.0%
GACTTAATTTCCCACCTTAA+TGG + chr6_3:59557914-59557933 Msa0955410:CDS 35.0%
TAATTTCCCACCTTAATGGA+AGG + chr6_3:59557918-59557937 Msa0955410:CDS 35.0%
TGAATGAATCCTTACTTGCT+TGG - chr6_3:59558275-59558294 None:intergenic 35.0%
GTGTGTGTGTGTAAATTGTA+TGG + chr6_3:59558415-59558434 Msa0955410:intron 35.0%
GTGTGTAAATTGTATGGATG+TGG + chr6_3:59558421-59558440 Msa0955410:intron 35.0%
TCAACCATAGTAGAAACCAA+AGG + chr6_3:59558515-59558534 Msa0955410:CDS 35.0%
! GATTCCTTTGGTTTCTACTA+TGG - chr6_3:59558522-59558541 None:intergenic 35.0%
ACCTTGAATTCCCACATTAA+TGG + chr6_3:59558656-59558675 Msa0955410:CDS 35.0%
CCTTGAATTCCCACATTAAT+GGG + chr6_3:59558657-59558676 Msa0955410:CDS 35.0%
TAATGTTATGCTTCCAAGTG+AGG + chr6_3:59558796-59558815 Msa0955410:intron 35.0%
!! AGTTTTGATAACCATAGCGT+AGG + chr6_3:59558876-59558895 Msa0955410:intron 35.0%
!! GTTTTGATAACCATAGCGTA+GGG + chr6_3:59558877-59558896 Msa0955410:intron 35.0%
!!! TGCTATTTTGCAGAAAACAC+AGG + chr6_3:59559098-59559117 Msa0955410:intron 35.0%
TCTTAAGAGTTCTACACAGA+AGG + chr6_3:59559428-59559447 Msa0955410:CDS 35.0%
ATTAGCTCCACTCTTAACAT+TGG - chr6_3:59559658-59559677 None:intergenic 35.0%
!! AACAGTAGTGATGGATGATA+AGG + chr6_3:59559701-59559720 Msa0955410:CDS 35.0%
!! ACAGTAGTGATGGATGATAA+GGG + chr6_3:59559702-59559721 Msa0955410:CDS 35.0%
! TGAATTCGGCTTGTAGGATT+TGG + chr6_3:59555445-59555464 Msa0955410:five_prime_UTR 40.0%
! GAATTCGGCTTGTAGGATTT+GGG + chr6_3:59555446-59555465 Msa0955410:five_prime_UTR 40.0%
! AATTCGGCTTGTAGGATTTG+GGG + chr6_3:59555447-59555466 Msa0955410:five_prime_UTR 40.0%
! AATGACATTTTGCTCCGTGT+CGG + chr6_3:59555537-59555556 Msa0955410:five_prime_UTR 40.0%
!! TTAGTTGGTAGGTTGCAAGT+GGG - chr6_3:59555582-59555601 None:intergenic 40.0%
!! TTTAGTTGGTAGGTTGCAAG+TGG - chr6_3:59555583-59555602 None:intergenic 40.0%
!! ATTCAAGCTCAAGCTCTGAA+TGG - chr6_3:59555674-59555693 None:intergenic 40.0%
TCAGAGCTTGAGCTTGAATT+TGG + chr6_3:59555675-59555694 Msa0955410:five_prime_UTR 40.0%
GGTAGTAAATGGCTTCTTCA+TGG + chr6_3:59555696-59555715 Msa0955410:exon 40.0%
GCCAGATCAAGAACTTACAT+AGG - chr6_3:59555903-59555922 None:intergenic 40.0%
AAGTTCTTGATCTGGCTGTT+TGG + chr6_3:59555907-59555926 Msa0955410:intron 40.0%
!! TGCGATTATGGTTTTTGGAC+AGG + chr6_3:59556002-59556021 Msa0955410:intron 40.0%
!! TTATGTATTGGTGGCGTGTT+TGG + chr6_3:59556188-59556207 Msa0955410:intron 40.0%
GTGTCTATGTCTCTCGTAAA+TGG + chr6_3:59556324-59556343 Msa0955410:intron 40.0%
GTGCCAATGTCATGTGATAT+TGG + chr6_3:59556395-59556414 Msa0955410:intron 40.0%
TGGCCAATATCACATGACAT+TGG - chr6_3:59556401-59556420 None:intergenic 40.0%
!! GATACGTGTCACATTTTGGT+TGG - chr6_3:59556421-59556440 None:intergenic 40.0%
ACCTGATTGAACTTGACATC+AGG + chr6_3:59556739-59556758 Msa0955410:intron 40.0%
ACCTGATGTCAAGTTCAATC+AGG - chr6_3:59556743-59556762 None:intergenic 40.0%
TTGACATCAGGTTTCAACTC+TGG + chr6_3:59556751-59556770 Msa0955410:intron 40.0%
!! AATCTTCTGGCTCATCATAC+CGG + chr6_3:59556794-59556813 Msa0955410:CDS 40.0%
GCTAGCAATGAGTTTCTCTA+AGG - chr6_3:59556979-59556998 None:intergenic 40.0%
AGAGAAACTCATTGCTAGCA+AGG + chr6_3:59556980-59556999 Msa0955410:CDS 40.0%
TTGGAGTACAAACCCAACAT+AGG + chr6_3:59557036-59557055 Msa0955410:intron 40.0%
! TCATTTGTCACTTCTGCATC+AGG - chr6_3:59557175-59557194 None:intergenic 40.0%
TGTCACCATGAGACTAAGAA+AGG - chr6_3:59557306-59557325 None:intergenic 40.0%
TTGTGCAGACAAATGGAGAA+AGG + chr6_3:59557352-59557371 Msa0955410:intron 40.0%
TGCGTATATTTGGATGTTGC+AGG + chr6_3:59557724-59557743 Msa0955410:intron 40.0%
GTGGACTTGTGCTATATGTT+TGG + chr6_3:59557871-59557890 Msa0955410:CDS 40.0%
GTGTTTCCTTCCATTAAGGT+GGG - chr6_3:59557927-59557946 None:intergenic 40.0%
TGTGTTTCCTTCCATTAAGG+TGG - chr6_3:59557928-59557947 None:intergenic 40.0%
ACCTTAATGGAAGGAAACAC+AGG + chr6_3:59557927-59557946 Msa0955410:CDS 40.0%
CCTTAATGGAAGGAAACACA+GGG + chr6_3:59557928-59557947 Msa0955410:CDS 40.0%
CTCATACAAGAACTTGTAGC+AGG - chr6_3:59558106-59558125 None:intergenic 40.0%
GTACTCTAAATGTCACCATG+AGG - chr6_3:59557316-59557335 None:intergenic 40.0%
GAGCTTCTTGTGCAGAAAAA+TGG + chr6_3:59558178-59558197 Msa0955410:intron 40.0%
AAGACTCCAAACAGAGAACA+AGG + chr6_3:59558204-59558223 Msa0955410:CDS 40.0%
AGACTCCAAACAGAGAACAA+GGG + chr6_3:59558205-59558224 Msa0955410:CDS 40.0%
GTAGAAACCAAAGGAATCGA+TGG + chr6_3:59558524-59558543 Msa0955410:CDS 40.0%
GTGGACTTGTGCTTTATGTT+TGG + chr6_3:59558613-59558632 Msa0955410:CDS 40.0%
TGTGGGAATTCAAGGTTATC+TGG - chr6_3:59558652-59558671 None:intergenic 40.0%
CCCATTAATGTGGGAATTCA+AGG - chr6_3:59558660-59558679 None:intergenic 40.0%
TGAATTCCCACATTAATGGG+AGG + chr6_3:59558660-59558679 Msa0955410:CDS 40.0%
GTGTTTCCTCCCATTAATGT+GGG - chr6_3:59558669-59558688 None:intergenic 40.0%
TGTGTTTCCTCCCATTAATG+TGG - chr6_3:59558670-59558689 None:intergenic 40.0%
AGAACCTTTCAGAACCCTTT+AGG + chr6_3:59558741-59558760 Msa0955410:CDS 40.0%
!! TCAACCTAAAGGGTTCTGAA+AGG - chr6_3:59558748-59558767 None:intergenic 40.0%
TGACAGGAATATCCTGCAAA+TGG - chr6_3:59559320-59559339 None:intergenic 40.0%
!!! GCTGATGATGCATTTTGACT+TGG - chr6_3:59559357-59559376 None:intergenic 40.0%
ACAGCAAAGAGTGACAAATC+TGG + chr6_3:59559396-59559415 Msa0955410:CDS 40.0%
ACCTTGAATTCCCACCTTAA+AGG + chr6_3:59559507-59559526 Msa0955410:CDS 40.0%
CCTTGAATTCCCACCTTAAA+GGG + chr6_3:59559508-59559527 Msa0955410:CDS 40.0%
GAACATCTATCAGTCCAAAG+AGG + chr6_3:59559596-59559615 Msa0955410:CDS 40.0%
ATTGAAGGGAACAGTAGTGA+TGG + chr6_3:59559692-59559711 Msa0955410:CDS 40.0%
GACACGGAGCAAAATGTCAT+TGG - chr6_3:59555538-59555557 None:intergenic 45.0%
! GCTCTGAATGGAAAAGGCAA+AGG - chr6_3:59555662-59555681 None:intergenic 45.0%
!! GCTCAAGCTCTGAATGGAAA+AGG - chr6_3:59555668-59555687 None:intergenic 45.0%
CAAGAGGCCTAGAAAAGAGA+AGG - chr6_3:59555866-59555885 None:intergenic 45.0%
GTAGCACTTGTGAGACATTG+TGG - chr6_3:59556486-59556505 None:intergenic 45.0%
GCGAAATAACATTGTCACCG+TGG - chr6_3:59556575-59556594 None:intergenic 45.0%
TAAGAAGCTCGTCCAAAGTC+CGG - chr6_3:59556816-59556835 None:intergenic 45.0%
GCTGACTATTTGCGGTTTCA+TGG - chr6_3:59556862-59556881 None:intergenic 45.0%
TGAAACCGCAAATAGTCAGC+TGG + chr6_3:59556862-59556881 Msa0955410:CDS 45.0%
GAAACCGCAAATAGTCAGCT+GGG + chr6_3:59556863-59556882 Msa0955410:CDS 45.0%
AAACCGCAAATAGTCAGCTG+GGG + chr6_3:59556864-59556883 Msa0955410:CDS 45.0%
AGGGTCTTTGTGCAGACAAA+TGG + chr6_3:59557345-59557364 Msa0955410:intron 45.0%
TTCCTGCAACCAAGCAAGTA+AGG + chr6_3:59557430-59557449 Msa0955410:intron 45.0%
TGAATGAGGCCTTACTTGCT+TGG - chr6_3:59557442-59557461 None:intergenic 45.0%
TTCACTCTCTGCTGTTCCTT+TGG - chr6_3:59557789-59557808 None:intergenic 45.0%
GAGAAGTTGGAGAAGTTCCT+CGG + chr6_3:59557819-59557838 Msa0955410:CDS 45.0%
CCCTGTGTTTCCTTCCATTA+AGG - chr6_3:59557931-59557950 None:intergenic 45.0%
! TGCATCCTTTTGCTTCTGCT+GGG - chr6_3:59557990-59558009 None:intergenic 45.0%
CTAAATGTCACCATGAGGCT+GGG - chr6_3:59558144-59558163 None:intergenic 45.0%
TCTAAATGTCACCATGAGGC+TGG - chr6_3:59558145-59558164 None:intergenic 45.0%
ATCAATAGCCTCCACATCCT+CGG - chr6_3:59558233-59558252 None:intergenic 45.0%
TTCCTGCAACCAAGCAAGTA+AGG + chr6_3:59557430-59557449 Msa0955410:intron 45.0%
ATCCTTACTTGCTTGGTTGC+AGG - chr6_3:59558268-59558287 None:intergenic 45.0%
! CTTTTAGCATGCCTCAACTC+TGG - chr6_3:59558347-59558366 None:intergenic 45.0%
CAGAGTTGAGGCATGCTAAA+AGG + chr6_3:59558345-59558364 Msa0955410:intron 45.0%
! AGAAGGAAGTGCAGAAAGAG+TGG + chr6_3:59558594-59558613 Msa0955410:CDS 45.0%
!! GGTTCTGAAAGGTTCTTCTG+CGG - chr6_3:59558737-59558756 None:intergenic 45.0%
! GCTTCCAAGTGAGGAGTATA+TGG + chr6_3:59558805-59558824 Msa0955410:intron 45.0%
GATGCCATATACTCCTCACT+TGG - chr6_3:59558812-59558831 None:intergenic 45.0%
TGGCATCTCACATAAATCGG+TGG + chr6_3:59558825-59558844 Msa0955410:intron 45.0%
TGCAAAATGTCCCTACGCTA+TGG - chr6_3:59558890-59558909 None:intergenic 45.0%
CACACAAATACAGGACGTGT+GGG - chr6_3:59559276-59559295 None:intergenic 45.0%
ACACACAAATACAGGACGTG+TGG - chr6_3:59559277-59559296 None:intergenic 45.0%
!! GGTGCAATTTTAGGTGTGAC+AGG - chr6_3:59559336-59559355 None:intergenic 45.0%
AAATGCATCATCAGCCACAG+TGG + chr6_3:59559362-59559381 Msa0955410:CDS 45.0%
TGTTCCTTTCGTTTCCACTG+TGG - chr6_3:59559379-59559398 None:intergenic 45.0%
! AGAAGGAAGTGCAGAAAGAG+TGG + chr6_3:59558594-59558613 Msa0955410:CDS 45.0%
!! CCCTTTAAGGTGGGAATTCA+AGG - chr6_3:59559511-59559530 None:intergenic 45.0%
TGAATTCCCACCTTAAAGGG+AGG + chr6_3:59559511-59559530 Msa0955410:CDS 45.0%
!! GTGTTTCCTCCCTTTAAGGT+GGG - chr6_3:59559520-59559539 None:intergenic 45.0%
! TGTGTTTCCTCCCTTTAAGG+TGG - chr6_3:59559521-59559540 None:intergenic 45.0%
ACCTTAAAGGGAGGAAACAC+AGG + chr6_3:59559520-59559539 Msa0955410:CDS 45.0%
CCTTAAAGGGAGGAAACACA+GGG + chr6_3:59559521-59559540 Msa0955410:CDS 45.0%
CATCTATCAGTCCAAAGAGG+AGG + chr6_3:59559599-59559618 Msa0955410:CDS 45.0%
! CTTCTGTTTCTCCTCCTCTT+TGG - chr6_3:59559613-59559632 None:intergenic 45.0%
TTCTAGGCCTCTTGTTGCTC+TGG + chr6_3:59555872-59555891 Msa0955410:intron 50.0%
GGATACACCAGAGCAACAAG+AGG - chr6_3:59555882-59555901 None:intergenic 50.0%
TGTAGTCGGCCAATGTCACA+TGG + chr6_3:59556452-59556471 Msa0955410:intron 50.0%
GGCCAATGTCACATGGCATT+GGG + chr6_3:59556459-59556478 Msa0955410:intron 50.0%
GTCCCAATGCCATGTGACAT+TGG - chr6_3:59556464-59556483 None:intergenic 50.0%
TGGCTCATCATACCGGACTT+TGG + chr6_3:59556801-59556820 Msa0955410:CDS 50.0%
AACCGCAAATAGTCAGCTGG+GGG + chr6_3:59556865-59556884 Msa0955410:CDS 50.0%
AACCCCCAGCTGACTATTTG+CGG - chr6_3:59556870-59556889 None:intergenic 50.0%
GCTGGGGGTTAAATAGCTTC+TGG + chr6_3:59556880-59556899 Msa0955410:CDS 50.0%
!! TGGGTTGATTCCTGTCACAG+TGG + chr6_3:59557760-59557779 Msa0955410:CDS 50.0%
! CCTTTGGTTTCCACTGTGAC+AGG - chr6_3:59557773-59557792 None:intergenic 50.0%
CCTGTCACAGTGGAAACCAA+AGG + chr6_3:59557770-59557789 Msa0955410:CDS 50.0%
ACAGCAGAGAGTGAAAGAGC+TGG + chr6_3:59557794-59557813 Msa0955410:CDS 50.0%
GAAAGAGCTGGTGGAGAAGT+TGG + chr6_3:59557806-59557825 Msa0955410:CDS 50.0%
TCCTCGGAGTTCTACACAGA+AGG + chr6_3:59557835-59557854 Msa0955410:CDS 50.0%
CCTCGGAGTTCTACACAGAA+GGG + chr6_3:59557836-59557855 Msa0955410:CDS 50.0%
ACCTACCCAGCAGAAGCAAA+AGG + chr6_3:59557982-59558001 Msa0955410:CDS 50.0%
! TCCTTTTGCTTCTGCTGGGT+AGG - chr6_3:59557986-59558005 None:intergenic 50.0%
! CTGCATCCTTTTGCTTCTGC+TGG - chr6_3:59557991-59558010 None:intergenic 50.0%
!! GTCACTGCCATCGATTCCTT+TGG - chr6_3:59558534-59558553 None:intergenic 50.0%
TCTGTAGCGGTAGAACTCTG+AGG - chr6_3:59558575-59558594 None:intergenic 50.0%
GAGTTCTACCGCTACAGAGA+AGG + chr6_3:59558577-59558596 Msa0955410:CDS 50.0%
CTGCACTTCCTTCTCTGTAG+CGG - chr6_3:59558588-59558607 None:intergenic 50.0%
TCAGCCACAGTGGAAACGAA+AGG + chr6_3:59559372-59559391 Msa0955410:CDS 50.0%
GTGGACTTGTGCTTTGTGCT+CGG + chr6_3:59559464-59559483 Msa0955410:CDS 50.0%
CCCTGTGTTTCCTCCCTTTA+AGG - chr6_3:59559524-59559543 None:intergenic 50.0%
ATGTTCACCTTCTGCGAAGC+AGG - chr6_3:59559582-59559601 None:intergenic 50.0%
! GTTGGTAGGTTGCAAGTGGG+AGG - chr6_3:59555579-59555598 None:intergenic 55.0%
CGGCCAATGTCACATGGCAT+TGG + chr6_3:59556458-59556477 Msa0955410:intron 55.0%
GGCCTTACTTGCTTGGTTGC+AGG - chr6_3:59557435-59557454 None:intergenic 55.0%
GCAGAGAGTGAAAGAGCTGG+TGG + chr6_3:59557797-59557816 Msa0955410:CDS 55.0%
CCCTTCTGTGTAGAACTCCG+AGG - chr6_3:59557839-59557858 None:intergenic 55.0%
! AGAAGGGAGTGCAGAGAGAG+TGG + chr6_3:59557852-59557871 Msa0955410:CDS 55.0%
GGAAGGAAACACAGGGTTGC+TGG + chr6_3:59557935-59557954 Msa0955410:CDS 55.0%
CGGTGCCCTTGTTCTCTGTT+TGG - chr6_3:59558213-59558232 None:intergenic 55.0%
!! AACAGAGAACAAGGGCACCG+AGG + chr6_3:59558213-59558232 Msa0955410:CDS 55.0%
ATCGATGGCAGTGACACAGC+TGG + chr6_3:59558539-59558558 Msa0955410:CDS 55.0%
GAAAGGTTCTTCTGCGGAGC+AGG - chr6_3:59558731-59558750 None:intergenic 55.0%
GAAGCAACCTGCTTCGCAGA+AGG + chr6_3:59559572-59559591 Msa0955410:CDS 55.0%
GAGGCTGGGACGTGCAGAAT+TGG - chr6_3:59558130-59558149 None:intergenic 60.0%
TTCTGCACGTCCCAGCCTCA+TGG + chr6_3:59558131-59558150 Msa0955410:intron 60.0%
!! GAACAAGGGCACCGAGGATG+TGG + chr6_3:59558219-59558238 Msa0955410:CDS 60.0%
GATGGCAGTGACACAGCTGG+TGG + chr6_3:59558542-59558561 Msa0955410:CDS 60.0%
CAGTGACACAGCTGGTGGAG+AGG + chr6_3:59558547-59558566 Msa0955410:CDS 60.0%
!! CAAGGGCACCGAGGATGTGG+AGG + chr6_3:59558222-59558241 Msa0955410:CDS 65.0%
! CACTCGCGCGCGCGCGCACT+TGG - chr6_3:59558394-59558413 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 59555444 59559737 59555444 ID=Msa0955410;Name=Msa0955410
chr6_3 mRNA 59555444 59559737 59555444 ID=Msa0955410-mRNA-1;Parent=Msa0955410;Name=Msa0955410-mRNA-1;_AED=0.31;_eAED=0.32;_QI=223|0.6|0.54|0.90|0.9|0.81|11|0|577
chr6_3 exon 59555444 59555494 59555444 ID=Msa0955410-mRNA-1:exon:11767;Parent=Msa0955410-mRNA-1
chr6_3 exon 59555532 59555759 59555532 ID=Msa0955410-mRNA-1:exon:11768;Parent=Msa0955410-mRNA-1
chr6_3 exon 59555878 59555904 59555878 ID=Msa0955410-mRNA-1:exon:11769;Parent=Msa0955410-mRNA-1
chr6_3 exon 59556024 59556146 59556024 ID=Msa0955410-mRNA-1:exon:11770;Parent=Msa0955410-mRNA-1
chr6_3 exon 59556761 59557001 59556761 ID=Msa0955410-mRNA-1:exon:11771;Parent=Msa0955410-mRNA-1
chr6_3 exon 59557157 59557228 59557157 ID=Msa0955410-mRNA-1:exon:11772;Parent=Msa0955410-mRNA-1
chr6_3 exon 59557360 59557446 59557360 ID=Msa0955410-mRNA-1:exon:11773;Parent=Msa0955410-mRNA-1
chr6_3 exon 59557746 59558060 59557746 ID=Msa0955410-mRNA-1:exon:11774;Parent=Msa0955410-mRNA-1
chr6_3 exon 59558193 59558279 59558193 ID=Msa0955410-mRNA-1:exon:11775;Parent=Msa0955410-mRNA-1
chr6_3 exon 59558476 59558790 59558476 ID=Msa0955410-mRNA-1:exon:11776;Parent=Msa0955410-mRNA-1
chr6_3 exon 59559327 59559737 59559327 ID=Msa0955410-mRNA-1:exon:11777;Parent=Msa0955410-mRNA-1
chr6_3 five_prime_UTR 59555444 59555494 59555444 ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1
chr6_3 five_prime_UTR 59555532 59555703 59555532 ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59555704 59555759 59555704 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59555878 59555904 59555878 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59556024 59556146 59556024 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59556761 59557001 59556761 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59557157 59557228 59557157 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59557360 59557446 59557360 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59557746 59558060 59557746 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59558193 59558279 59558193 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59558476 59558790 59558476 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3 CDS 59559327 59559737 59559327 ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
Gene Sequence

>Msa0955410

ATGGCTTCTTCATGGTTTCTCATACAGGCTTTCAAATGCCTTCATCATTTTGCATGGCCTCTTGTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAAACTGACTCATATGCTGAAACTAAGGATTTGATCTCATATTGGATACTTCTTTCCTTAATTTACCTCTTTGAATATGCTTTTATCAACCTTCTTCTATGGTTTCAACTCTGGCCGTACACTAAGCTAATGATAATCTTCTGGCTCATCATACCGGACTTTGGACGAGCTTCTTATGTTTATAATAAGCTTATTCACTCCATGAAACCGCAAATAGTCAGCTGGGGGTTAAATAGCTTCTGGAAGAAGTGGTTTTTTGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCCTGATGCAGAAGTGACAAATGAAATTTCAGCTACCGATGATAAAGAAATGTTAAAGACAAATGGAGAAAGGCTCCAAACAGAGCAAAAAGATATCAAAGGTTTGGAAGCTATTGACAAAAAAGAAATTCCTGCAACCAAGCAAGATATAATTTTTATTGGGTTGATTCCTGTCACAGTGGAAACCAAAGGAACAGCAGAGAGTGAAAGAGCTGGTGGAGAAGTTGGAGAAGTTCCTCGGAGTTCTACACAGAAGGGAGTGCAGAGAGAGTGGACTTGTGCTATATGTTTGGTAACAACATCGCGTGAGAAAGACTTAATTTCCCACCTTAATGGAAGGAAACACAGGGTTGCTGGTGAAGCTTTAATAGCAAACAAGCAACCTACCCAGCAGAAGCAAAAGGATGCAGAAGCGACAACAAATAAAACCATAGCTACTGATAATAAAAAAATACCCAAGAAAAATGGAGAAAGACTCCAAACAGAGAACAAGGGCACCGAGGATGTGGAGGCTATTGATAAAAAAGAAATTCCTGCAACCAAGCAAAGAATGTATGCTAATATTGTTGCAAGTCAAAAAGCATCATCAACCATAGTAGAAACCAAAGGAATCGATGGCAGTGACACAGCTGGTGGAGAGGTTCCTCAGAGTTCTACCGCTACAGAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACAACTTCGAGCCAGATAACCTTGAATTCCCACATTAATGGGAGGAAACACAGAGCTGCTTGTGAAGCAGCTTTGAAAGCAAAGAAGCAACCTGCTCCGCAGAAGAACCTTTCAGAACCCTTTAGGTTGATTAATTCCAAATTAATATGTAAAGATATTCCTGTCACACCTAAAATTGCACCAAGTCAAAATGCATCATCAGCCACAGTGGAAACGAAAGGAACAGCAAAGAGTGACAAATCTGGTGAAGAGAATCTTAAGAGTTCTACACAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTGTGCTCGGTAACAACATCGAGCAAGATAACCTTGAATTCCCACCTTAAAGGGAGGAAACACAGGGCTAGTTGTGATGCTGCTTTGAAAGCAAAGAAGCAACCTGCTTCGCAGAAGGTGAACATCTATCAGTCCAAAGAGGAGGAGAAACAGAAGAATGTTAGCAATAAGTTCAATTCCAATGTTAAGAGTGGAGCTAATATTCTTAAGAAAGGATTGAAGGGAACAGTAGTGATGGATGATAAGGGACGCATAATGTAG

Protein sequence

>Msa0955410

MASSWFLIQAFKCLHHFAWPLVALVYPMCASVQAIETDSYAETKDLISYWILLSLIYLFEYAFINLLLWFQLWPYTKLMIIFWLIIPDFGRASYVYNKLIHSMKPQIVSWGLNSFWKKWFFEKDNFLMHAERYMKENGTEALEKLIASKNTMCRPDAEVTNEISATDDKEMLKTNGERLQTEQKDIKGLEAIDKKEIPATKQDIIFIGLIPVTVETKGTAESERAGGEVGEVPRSSTQKGVQREWTCAICLVTTSREKDLISHLNGRKHRVAGEALIANKQPTQQKQKDAEATTNKTIATDNKKIPKKNGERLQTENKGTEDVEAIDKKEIPATKQRMYANIVASQKASSTIVETKGIDGSDTAGGEVPQSSTATEKEVQKEWTCALCLVTTSSQITLNSHINGRKHRAACEAALKAKKQPAPQKNLSEPFRLINSKLICKDIPVTPKIAPSQNASSATVETKGTAKSDKSGEENLKSSTQKEVQKEWTCALCSVTTSSKITLNSHLKGRKHRASCDAALKAKKQPASQKVNIYQSKEEEKQKNVSNKFNSNVKSGANILKKGLKGTVVMDDKGRIM*