AlfalfaGEDB | Msa0955410

M. sativa cultivar zhongmu-4 / Msa0955410

KEGG: -
GO: -
PFAM: PF03134.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955410	XP_003608382.2	63.127	339	81	9	272	573	141	472	1.06e-101	328
Msa0955410	XP_003608382.2	68.470	536	125	9	1	514	1	514	0.0	694

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955410	sp\|Q9S784\|HA22C_ARATH	40.805	174	85	7	7	168	14	181	5.45e-30	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955410	G7JV31	63.127	339	81	9	272	573	141	472	5.07e-102	328
Msa0955410	G7JV31	68.470	536	125	9	1	514	1	514	0.0	694

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0863930	Msa0955410	0.800279	1.552590e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955410	MtrunA17_Chr4g0049651	68.470	536	125	9	1	514	1	514	0.0	694
Msa0955410	MtrunA17_Chr4g0049651	63.127	339	81	9	272	573	141	472	9.76e-106	328
Msa0955410	MtrunA17_Chr4g0049671	54.153	602	195	16	1	570	1	553	0.0	541
Msa0955410	MtrunA17_Chr4g0049701	67.692	260	77	3	20	274	17	274	2.06e-121	361
Msa0955410	MtrunA17_Chr4g0049701	63.399	153	46	4	289	440	153	296	3.75e-50	176
Msa0955410	MtrunA17_Chr4g0049701	66.667	75	24	1	449	522	205	279	9.13e-21	93.6
Msa0955410	MtrunA17_Chr4g0049681	68.398	231	65	5	212	441	20	243	4.36e-95	291
Msa0955410	MtrunA17_Chr4g0049681	48.636	220	79	5	342	530	11	227	6.23e-45	160
Msa0955410	MtrunA17_Chr4g0049681	60.584	137	44	3	156	286	95	227	2.46e-41	150
Msa0955410	MtrunA17_Chr4g0049681	65.556	90	31	0	441	530	3	92	5.94e-29	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955410	AT1G69700.1	40.805	174	85	7	7	168	14	181	5.54e-31	119
Msa0955410	AT1G74520.1	41.958	143	75	3	17	154	19	158	1.25e-29	115
Msa0955410	AT1G74520.2	41.958	143	75	3	17	154	19	158	1.25e-29	115
Msa0955410	AT5G62490.1	35.374	147	87	3	11	154	13	154	6.69e-22	93.2
Msa0955410	AT2G42820.1	36.111	108	65	1	6	113	3	106	4.84e-19	84.7
Msa0955410	AT5G50720.1	36.111	108	62	1	7	107	4	111	2.73e-18	81.3
Msa0955410	AT4G24960.1	34.000	100	63	1	1	100	1	97	1.84e-16	76.6
Msa0955410	AT4G24960.3	33.766	77	51	0	24	100	2	78	1.50e-12	65.5

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Find 136 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGCAAATAGTCAGCTG+GGG	0.642341	6_3:+59556864	Msa0955410:CDS
AAAGAATTTACCATAGAAGA+AGG	0.474141	6_3:-59556135	None:intergenic
AAATAATAAAGTAGTTTAGT+TGG	0.392113	6_3:-59555594	None:intergenic
AAATGCATCATCAGCCACAG+TGG	0.664078	6_3:+59559362	Msa0955410:CDS
AACAGAGAACAAGGGCACCG+AGG	0.716455	6_3:+59558213	Msa0955410:CDS
AACAGTAGTGATGGATGATA+AGG	0.432339	6_3:+59559701	Msa0955410:CDS
AACCGCAAATAGTCAGCTGG+GGG	0.687491	6_3:+59556865	Msa0955410:CDS
AAGACTCCAAACAGAGAACA+AGG	0.564033	6_3:+59558204	Msa0955410:CDS
AATAAAGTAGTTTAGTTGGT+AGG	0.449509	6_3:-59555590	None:intergenic
AATCTTCTGGCTCATCATAC+CGG	0.523416	6_3:+59556794	Msa0955410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATAAGATATACCGACA+CGG	-	chr6_3:59555554-59555573	None:intergenic	30.0%
CTAAGGATTTGATCTCATAT+TGG	+	chr6_3:59556068-59556087	Msa0955410:CDS	30.0%
ATAGTGCATTTATGTATTGG+TGG	+	chr6_3:59556179-59556198	Msa0955410:intron	30.0%
CATAAATGATCAATAGATGG+AGG	-	chr6_3:59556236-59556255	None:intergenic	30.0%
GGTTCACTTATTAAAATTGG+CGG	+	chr6_3:59556285-59556304	Msa0955410:intron	30.0%
TCTCGTAAATGGATAATTAC+CGG	+	chr6_3:59556335-59556354	Msa0955410:intron	30.0%
TCAGAGTAAAAAAACGAACT+TGG	-	chr6_3:59556629-59556648	None:intergenic	30.0%
GATTAAGATCAAGTTCAATC+AGG	-	chr6_3:59556661-59556680	None:intergenic	30.0%
AAGTTCAATCAGGTACTAAA+AGG	-	chr6_3:59556733-59556752	None:intergenic	30.0%
CTAAGCTAATGATAATCTTC+TGG	+	chr6_3:59556781-59556800	Msa0955410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	59555444	59559737	59555444	ID=Msa0955410;Name=Msa0955410
chr6_3	mRNA	59555444	59559737	59555444	ID=Msa0955410-mRNA-1;Parent=Msa0955410;Name=Msa0955410-mRNA-1;_AED=0.31;_eAED=0.32;_QI=223\|0.6\|0.54\|0.90\|0.9\|0.81\|11\|0\|577
chr6_3	exon	59555444	59555494	59555444	ID=Msa0955410-mRNA-1:exon:11767;Parent=Msa0955410-mRNA-1
chr6_3	exon	59555532	59555759	59555532	ID=Msa0955410-mRNA-1:exon:11768;Parent=Msa0955410-mRNA-1
chr6_3	exon	59555878	59555904	59555878	ID=Msa0955410-mRNA-1:exon:11769;Parent=Msa0955410-mRNA-1
chr6_3	exon	59556024	59556146	59556024	ID=Msa0955410-mRNA-1:exon:11770;Parent=Msa0955410-mRNA-1
chr6_3	exon	59556761	59557001	59556761	ID=Msa0955410-mRNA-1:exon:11771;Parent=Msa0955410-mRNA-1
chr6_3	exon	59557157	59557228	59557157	ID=Msa0955410-mRNA-1:exon:11772;Parent=Msa0955410-mRNA-1
chr6_3	exon	59557360	59557446	59557360	ID=Msa0955410-mRNA-1:exon:11773;Parent=Msa0955410-mRNA-1
chr6_3	exon	59557746	59558060	59557746	ID=Msa0955410-mRNA-1:exon:11774;Parent=Msa0955410-mRNA-1
chr6_3	exon	59558193	59558279	59558193	ID=Msa0955410-mRNA-1:exon:11775;Parent=Msa0955410-mRNA-1
chr6_3	exon	59558476	59558790	59558476	ID=Msa0955410-mRNA-1:exon:11776;Parent=Msa0955410-mRNA-1
chr6_3	exon	59559327	59559737	59559327	ID=Msa0955410-mRNA-1:exon:11777;Parent=Msa0955410-mRNA-1
chr6_3	five_prime_UTR	59555444	59555494	59555444	ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1
chr6_3	five_prime_UTR	59555532	59555703	59555532	ID=Msa0955410-mRNA-1:five_prime_utr;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59555704	59555759	59555704	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59555878	59555904	59555878	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59556024	59556146	59556024	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59556761	59557001	59556761	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59557157	59557228	59557157	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59557360	59557446	59557360	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59557746	59558060	59557746	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59558193	59558279	59558193	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59558476	59558790	59558476	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1
chr6_3	CDS	59559327	59559737	59559327	ID=Msa0955410-mRNA-1:cds;Parent=Msa0955410-mRNA-1

Gene Sequence

>Msa0955410

ATGGCTTCTTCATGGTTTCTCATACAGGCTTTCAAATGCCTTCATCATTTTGCATGGCCTCTTGTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAAACTGACTCATATGCTGAAACTAAGGATTTGATCTCATATTGGATACTTCTTTCCTTAATTTACCTCTTTGAATATGCTTTTATCAACCTTCTTCTATGGTTTCAACTCTGGCCGTACACTAAGCTAATGATAATCTTCTGGCTCATCATACCGGACTTTGGACGAGCTTCTTATGTTTATAATAAGCTTATTCACTCCATGAAACCGCAAATAGTCAGCTGGGGGTTAAATAGCTTCTGGAAGAAGTGGTTTTTTGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCCTGATGCAGAAGTGACAAATGAAATTTCAGCTACCGATGATAAAGAAATGTTAAAGACAAATGGAGAAAGGCTCCAAACAGAGCAAAAAGATATCAAAGGTTTGGAAGCTATTGACAAAAAAGAAATTCCTGCAACCAAGCAAGATATAATTTTTATTGGGTTGATTCCTGTCACAGTGGAAACCAAAGGAACAGCAGAGAGTGAAAGAGCTGGTGGAGAAGTTGGAGAAGTTCCTCGGAGTTCTACACAGAAGGGAGTGCAGAGAGAGTGGACTTGTGCTATATGTTTGGTAACAACATCGCGTGAGAAAGACTTAATTTCCCACCTTAATGGAAGGAAACACAGGGTTGCTGGTGAAGCTTTAATAGCAAACAAGCAACCTACCCAGCAGAAGCAAAAGGATGCAGAAGCGACAACAAATAAAACCATAGCTACTGATAATAAAAAAATACCCAAGAAAAATGGAGAAAGACTCCAAACAGAGAACAAGGGCACCGAGGATGTGGAGGCTATTGATAAAAAAGAAATTCCTGCAACCAAGCAAAGAATGTATGCTAATATTGTTGCAAGTCAAAAAGCATCATCAACCATAGTAGAAACCAAAGGAATCGATGGCAGTGACACAGCTGGTGGAGAGGTTCCTCAGAGTTCTACCGCTACAGAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGGTAACAACTTCGAGCCAGATAACCTTGAATTCCCACATTAATGGGAGGAAACACAGAGCTGCTTGTGAAGCAGCTTTGAAAGCAAAGAAGCAACCTGCTCCGCAGAAGAACCTTTCAGAACCCTTTAGGTTGATTAATTCCAAATTAATATGTAAAGATATTCCTGTCACACCTAAAATTGCACCAAGTCAAAATGCATCATCAGCCACAGTGGAAACGAAAGGAACAGCAAAGAGTGACAAATCTGGTGAAGAGAATCTTAAGAGTTCTACACAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTGTGCTCGGTAACAACATCGAGCAAGATAACCTTGAATTCCCACCTTAAAGGGAGGAAACACAGGGCTAGTTGTGATGCTGCTTTGAAAGCAAAGAAGCAACCTGCTTCGCAGAAGGTGAACATCTATCAGTCCAAAGAGGAGGAGAAACAGAAGAATGTTAGCAATAAGTTCAATTCCAATGTTAAGAGTGGAGCTAATATTCTTAAGAAAGGATTGAAGGGAACAGTAGTGATGGATGATAAGGGACGCATAATGTAG

Protein sequence

>Msa0955410

MASSWFLIQAFKCLHHFAWPLVALVYPMCASVQAIETDSYAETKDLISYWILLSLIYLFEYAFINLLLWFQLWPYTKLMIIFWLIIPDFGRASYVYNKLIHSMKPQIVSWGLNSFWKKWFFEKDNFLMHAERYMKENGTEALEKLIASKNTMCRPDAEVTNEISATDDKEMLKTNGERLQTEQKDIKGLEAIDKKEIPATKQDIIFIGLIPVTVETKGTAESERAGGEVGEVPRSSTQKGVQREWTCAICLVTTSREKDLISHLNGRKHRVAGEALIANKQPTQQKQKDAEATTNKTIATDNKKIPKKNGERLQTENKGTEDVEAIDKKEIPATKQRMYANIVASQKASSTIVETKGIDGSDTAGGEVPQSSTATEKEVQKEWTCALCLVTTSSQITLNSHINGRKHRAACEAALKAKKQPAPQKNLSEPFRLINSKLICKDIPVTPKIAPSQNASSATVETKGTAKSDKSGEENLKSSTQKEVQKEWTCALCSVTTSSKITLNSHLKGRKHRASCDAALKAKKQPASQKVNIYQSKEEEKQKNVSNKFNSNVKSGANILKKGLKGTVVMDDKGRIM*