AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0863930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863930 MtrunA17_Chr5g0445861 56.886 334 77 9 1 294 91 397 2.58e-84 263
Msa0863930 MtrunA17_Chr5g0445961 44.186 301 128 6 3 263 97 397 1.95e-51 181
Msa0863930 MtrunA17_Chr5g0445881 36.058 416 163 12 1 363 68 433 6.62e-47 167
Msa0863930 MtrunA17_Chr5g0445771 31.510 457 150 11 1 361 83 472 1.22e-38 145
Msa0863930 MtrunA17_Chr5g0445831 35.260 346 146 13 1 291 64 386 3.95e-26 108
Msa0863930 MtrunA17_Chr5g0446181 34.818 247 98 10 157 360 121 347 7.62e-20 90.1
Msa0863930 MtrunA17_Chr5g0445871 39.375 160 55 6 242 363 15 170 4.82e-19 85.1
Msa0863930 MtrunA17_Chr5g0445811 34.848 264 114 11 56 291 30 263 5.88e-19 86.3
Msa0863930 MtrunA17_Chr5g0445801 56.522 69 26 2 296 360 5 73 6.76e-18 79.0
Msa0863930 MtrunA17_Chr5g0445821 48.571 105 48 3 296 396 5 107 3.09e-17 77.0
Msa0863930 MtrunA17_Chr5g0434161 65.517 87 22 2 94 172 1 87 1.13e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 73 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAAAGAATGTCATTTC+TGG 0.196713 5_4:+64033286 Msa0863930:CDS
TAACAAGTTGAAGGATAAAA+TGG 0.296417 5_4:+64030838 Msa0863930:CDS
TAGCAAAATGAATGAGGATT+TGG 0.304422 5_4:+64030805 Msa0863930:CDS
GGAAACAGTGAACACAAATT+TGG 0.305436 5_4:+64031276 Msa0863930:CDS
GTCAGCAACATTTGCAAACT+TGG 0.306954 5_4:-64033368 None:intergenic
GAGATCAAATTTGTCAGAAA+TGG 0.314011 5_4:+64030606 Msa0863930:CDS
TTGATGAGTTTCTTGCAATT+TGG 0.348899 5_4:-64030630 None:intergenic
TGAGAAATTGAAGGAGAAAA+TGG 0.358585 5_4:+64031057 Msa0863930:CDS
AATGCATTTGATGTGCTAAA+AGG 0.364291 5_4:+64031091 Msa0863930:CDS
TCGAAGCAAGGTTGGTGTAT+TGG 0.380521 5_4:+64031201 Msa0863930:intron
TCAAGAGTTGGAGAAGTTGA+AGG 0.432096 5_4:+64030880 Msa0863930:CDS
AATAGAGGTTTCACTGTTGT+CGG 0.446667 5_4:-64033416 None:intergenic
ATAGAGGTTTCACTGTTGTC+GGG 0.452113 5_4:-64033415 None:intergenic
AAAATGTAGTCTGACATTCC+AGG 0.479167 5_4:+64033508 Msa0863930:exon
AACAGAGGAACTAGAAATAG+AGG 0.480923 5_4:-64033431 None:intergenic
CAAAATGAATGAGGATTTGG+AGG 0.483467 5_4:+64030808 Msa0863930:CDS
TGGAAATGTAGTTCAAGAGT+TGG 0.485439 5_4:+64030868 Msa0863930:CDS
GAACGAAAACAGAAAATTAG+TGG 0.485865 5_4:+64031318 Msa0863930:CDS
TGAAGTGCTATTGATGAACT+TGG 0.486913 5_4:-64033337 None:intergenic
GGAGGATGAAAAGAATGCTT+TGG 0.493328 5_4:+64031222 Msa0863930:CDS
AAGGAGAAAATGGTGGAAGA+TGG 0.497085 5_4:+64031067 Msa0863930:CDS
GATGTTGGTGGCAATGAGGT+TGG 0.498941 5_4:+64031490 Msa0863930:CDS
CCATCTTCATTTCTTTGCAA+AGG 0.504483 5_4:-64031538 None:intergenic
GATGAAAAGAATGCTTTGGC+TGG 0.508133 5_4:+64031226 Msa0863930:CDS
AAGGATAAAATGGTGGAAGA+TGG 0.511454 5_4:+64030848 Msa0863930:CDS
TATGGTGGTGGAAGCAATGA+GGG 0.513770 5_4:+64031457 Msa0863930:CDS
GAAGATGGCCATCACTTTCA+CGG 0.515639 5_4:+64031553 Msa0863930:CDS
GGTCATGGCTAATTCAATCC+TGG 0.517360 5_4:-64033526 None:intergenic
GCTATTGATGAACTTGGAGT+TGG 0.518099 5_4:-64033331 None:intergenic
ACACGAGAACAAGTAGAGGC+TGG 0.519826 5_4:+64030764 Msa0863930:CDS
AAAGAATGCAGAGTTAGAGC+AGG 0.521553 5_4:+64030946 Msa0863930:CDS
GAATGCAGAGTTAGAGCAGG+AGG 0.527723 5_4:+64030949 Msa0863930:CDS
AGTGCTTAGCAAAATGAATG+AGG 0.532316 5_4:+64030799 Msa0863930:CDS
AAGCAAGGTTGGTGTATTGG+AGG 0.533197 5_4:+64031204 Msa0863930:intron
GGGTGAGATTAACAAGTTGA+AGG 0.537450 5_4:+64030829 Msa0863930:CDS
AATTTCAAGGTTACATGTAG+AGG 0.548212 5_4:+64030568 Msa0863930:intron
CTCATTGCTTCCACCACCAT+AGG 0.549111 5_4:-64031455 None:intergenic
TGGAAGTTTGAATATGCAAA+AGG 0.553990 5_4:+64033210 Msa0863930:CDS
ATTAGTGGATGAGAAACGTA+AGG 0.555462 5_4:+64031333 Msa0863930:CDS
TGAAAGAGTTGCAAGGTTGG+AGG 0.556989 5_4:+64031402 Msa0863930:intron
GGGGATGGAGAGGATGTTGG+TGG 0.560054 5_4:+64031478 Msa0863930:CDS
AGTGTAGATGCCTATGGTGG+TGG 0.563597 5_4:+64031445 Msa0863930:CDS
GAGTGATGAGTTGGAGTGTG+AGG 0.568828 5_4:+64031033 Msa0863930:CDS
CACGAGAACAAGTAGAGGCT+GGG 0.571363 5_4:+64030765 Msa0863930:CDS
TCGTGCTGAAATCTATGATA+AGG 0.576606 5_4:+64030466 None:intergenic
CAAGTTGAAGGATAAAATGG+TGG 0.577376 5_4:+64030841 Msa0863930:CDS
AAAAGACATTGTGGAGAAGT+CGG 0.589977 5_4:+64031513 Msa0863930:CDS
TTTCCATACCGTGAAAGTGA+TGG 0.590846 5_4:-64031561 None:intergenic
GATGATCTGTGTATGTCTCA+AGG 0.597133 5_4:+64033265 Msa0863930:CDS
GAAATTGAAGGAGAAAATGG+TGG 0.597675 5_4:+64031060 Msa0863930:CDS
ACCATAGGCATCTACACTCA+CGG 0.598911 5_4:-64031440 None:intergenic
CATAAATCTTGACGACGAAG+AGG 0.599174 5_4:+64033243 Msa0863930:CDS
GTGTGAGGTTGAGAAATTGA+AGG 0.601115 5_4:+64031048 Msa0863930:CDS
CATTTCTGGAATTTGCGTGA+AGG 0.617154 5_4:+64033300 Msa0863930:CDS
AGAACAAGTAGAGGCTGGGA+AGG 0.618974 5_4:+64030769 Msa0863930:CDS
TAGAGGTTTCACTGTTGTCG+GGG 0.619554 5_4:-64033414 None:intergenic
TCTTGATACTATAATATCTG+TGG 0.621035 5_4:+64033465 Msa0863930:CDS
AGATGGAAATGCACTTGATG+TGG 0.626452 5_4:+64030916 Msa0863930:CDS
AGGCATCTACACTCACGGAA+AGG 0.629334 5_4:-64031435 None:intergenic
TTAGTGGATGAGAAACGTAA+GGG 0.632994 5_4:+64031334 Msa0863930:CDS
CCTTTGCAAAGAAATGAAGA+TGG 0.633874 5_4:+64031538 Msa0863930:CDS
TCCGTGAGTGTAGATGCCTA+TGG 0.638845 5_4:+64031439 Msa0863930:CDS
ATGGTGGTGGAAGCAATGAG+GGG 0.639170 5_4:+64031458 Msa0863930:CDS
CTATGGTGGTGGAAGCAATG+AGG 0.642450 5_4:+64031456 Msa0863930:CDS
TGAGGTTGGAAAAGACATTG+TGG 0.642468 5_4:+64031504 Msa0863930:CDS
TGGCAATTATAAGCAAGCTG+AGG 0.646585 5_4:+64031296 Msa0863930:CDS
AAAATGAATGAGGATTTGGA+GGG 0.663728 5_4:+64030809 Msa0863930:CDS
GAATGTTAAGTTGATGTGTG+AGG 0.668750 5_4:+64030730 Msa0863930:CDS
TGGTGGTGGAAGCAATGAGG+GGG 0.676872 5_4:+64031459 Msa0863930:CDS
AGAGGATGTTGGTGGCAATG+AGG 0.682533 5_4:+64031486 Msa0863930:CDS
GCTGACACGAGAACAAGTAG+AGG 0.695991 5_4:+64030760 Msa0863930:intron
AAGATACGATGAATCAACAG+AGG 0.711060 5_4:-64033446 None:intergenic
GTGAGTGTAGATGCCTATGG+TGG 0.713704 5_4:+64031442 Msa0863930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAACAAGAAAAAACA+CGG - chr5_4:64031700-64031719 None:intergenic 15.0%
!!! TTTTTATAAATTCTTTGAAC+TGG + chr5_4:64031739-64031758 Msa0863930:intron 15.0%
!! TTCAAAGAATAAACTATAAA+TGG - chr5_4:64032574-64032593 None:intergenic 15.0%
!! TGAAATTATAATAGCTATTT+AGG + chr5_4:64032854-64032873 Msa0863930:intron 15.0%
!! TTCAAAATGAGAAAATTTCA+AGG + chr5_4:64030555-64030574 Msa0863930:intron 20.0%
!! AAATTATGATTACTAGCTAT+AGG - chr5_4:64031803-64031822 None:intergenic 20.0%
!! TATAGCTAGTAATCATAATT+TGG + chr5_4:64031802-64031821 Msa0863930:intron 20.0%
!! CATATCTTATCAATTCATTA+TGG - chr5_4:64032154-64032173 None:intergenic 20.0%
!! TGAATTGATAAGATATGTAT+TGG + chr5_4:64032157-64032176 Msa0863930:intron 20.0%
!!! AAGGAATAGTTTAATTTGAA+TGG + chr5_4:64032447-64032466 Msa0863930:intron 20.0%
!!! TTTAATTTGAATGGTTATGT+AGG + chr5_4:64032456-64032475 Msa0863930:intron 20.0%
!!! TTAATTTGAATGGTTATGTA+GGG + chr5_4:64032457-64032476 Msa0863930:intron 20.0%
!! TTGGATTATATCTATACATT+AGG - chr5_4:64032636-64032655 None:intergenic 20.0%
!!! TTATAATAGCTATTTAGGTT+AGG + chr5_4:64032859-64032878 Msa0863930:intron 20.0%
!!! TTTGTTACATTATTGTTTTC+TGG - chr5_4:64032990-64033009 None:intergenic 20.0%
!! ATAATGTAACAAACAAAAGT+AGG + chr5_4:64032997-64033016 Msa0863930:intron 20.0%
!! CAAAAACTTAAAATAAGGAA+TGG - chr5_4:64033123-64033142 None:intergenic 20.0%
!! TCAAGCAAAAACTTAAAATA+AGG - chr5_4:64033128-64033147 None:intergenic 20.0%
!! TAACAAGTTGAAGGATAAAA+TGG + chr5_4:64030838-64030857 Msa0863930:CDS 25.0%
! TCGAAAATGCATATCTTTAT+AGG - chr5_4:64031607-64031626 None:intergenic 25.0%
!!! GTTTTATTTAAGCAATGAGT+AGG + chr5_4:64031711-64031730 Msa0863930:intron 25.0%
!!! ATAGGTATTTTAATGTGGTA+TGG - chr5_4:64031785-64031804 None:intergenic 25.0%
!!! TAGCTATAGGTATTTTAATG+TGG - chr5_4:64031790-64031809 None:intergenic 25.0%
! TGATAACTAGTCATCATATT+TGG + chr5_4:64031867-64031886 Msa0863930:intron 25.0%
! TTAGCTGAATTTGATTCATA+TGG + chr5_4:64032051-64032070 Msa0863930:intron 25.0%
! TTGATTCATATGGAAGTTTA+AGG + chr5_4:64032061-64032080 Msa0863930:intron 25.0%
! TTATCAATTCATTATGGTGA+AGG - chr5_4:64032148-64032167 None:intergenic 25.0%
! TCAAATTAAACTATTCCTTC+TGG - chr5_4:64032446-64032465 None:intergenic 25.0%
! TAATTTGAATGGTTATGTAG+GGG + chr5_4:64032458-64032477 Msa0863930:intron 25.0%
! ATATAATCCAACACTTGATA+TGG + chr5_4:64032645-64032664 Msa0863930:intron 25.0%
! TATAATCCAACACTTGATAT+GGG + chr5_4:64032646-64032665 Msa0863930:intron 25.0%
! TATAATTTCATTATGCCTTC+TGG - chr5_4:64032844-64032863 None:intergenic 25.0%
! TCTTGATACTATAATATCTG+TGG + chr5_4:64033465-64033484 Msa0863930:CDS 25.0%
!!! GACTACATTTTAGTCTTTTT+TGG - chr5_4:64033499-64033518 None:intergenic 25.0%
AATTTCAAGGTTACATGTAG+AGG + chr5_4:64030568-64030587 Msa0863930:intron 30.0%
GAGATCAAATTTGTCAGAAA+TGG + chr5_4:64030606-64030625 Msa0863930:CDS 30.0%
TTGATGAGTTTCTTGCAATT+TGG - chr5_4:64030633-64030652 None:intergenic 30.0%
!! TCTTTTGAAAGATTCCAAGA+AGG + chr5_4:64030655-64030674 Msa0863930:CDS 30.0%
!! AAAGATCTTTTGGAAGCTAA+TGG + chr5_4:64030683-64030702 Msa0863930:CDS 30.0%
TAGCAAAATGAATGAGGATT+TGG + chr5_4:64030805-64030824 Msa0863930:CDS 30.0%
AAAATGAATGAGGATTTGGA+GGG + chr5_4:64030809-64030828 Msa0863930:CDS 30.0%
AAAAACAAAGAGTGATGAGT+TGG + chr5_4:64031024-64031043 Msa0863930:CDS 30.0%
TGAGAAATTGAAGGAGAAAA+TGG + chr5_4:64031057-64031076 Msa0863930:CDS 30.0%
AATGCATTTGATGTGCTAAA+AGG + chr5_4:64031091-64031110 Msa0863930:CDS 30.0%
!! TGAGCTAGAATCTAAAGTTT+TGG + chr5_4:64031123-64031142 Msa0863930:intron 30.0%
!!! AGAATCTAAAGTTTTGGAGT+TGG + chr5_4:64031129-64031148 Msa0863930:intron 30.0%
GCTGGAATTGAGATTAAAAA+TGG + chr5_4:64031244-64031263 Msa0863930:CDS 30.0%
GATTAAAAATGGCGAATTGA+AGG + chr5_4:64031255-64031274 Msa0863930:CDS 30.0%
GAACGAAAACAGAAAATTAG+TGG + chr5_4:64031318-64031337 Msa0863930:CDS 30.0%
!! TTTCTGAAGTTAAGTGTGAT+CGG + chr5_4:64031634-64031653 Msa0863930:intron 30.0%
AAATGTTTGGTTAGATTGCT+AGG + chr5_4:64031659-64031678 Msa0863930:intron 30.0%
TAAATTCTTTGAACTGGTGA+AGG + chr5_4:64031745-64031764 Msa0863930:intron 30.0%
! TATGATGACTAGTTATCACT+GGG - chr5_4:64031865-64031884 None:intergenic 30.0%
! ATATGATGACTAGTTATCAC+TGG - chr5_4:64031866-64031885 None:intergenic 30.0%
! CTAGTCATCATATTTGGAAT+TGG + chr5_4:64031873-64031892 Msa0863930:intron 30.0%
! CTCAAACAAATCTTAGTTCT+GGG + chr5_4:64032113-64032132 Msa0863930:intron 30.0%
!! TCAAACAAATCTTAGTTCTG+GGG + chr5_4:64032114-64032133 Msa0863930:intron 30.0%
! TCTGGTAAAGTATTTGGATA+TGG + chr5_4:64032501-64032520 Msa0863930:intron 30.0%
!! TAGCTCTTTTCTATTTCTCT+TGG + chr5_4:64032531-64032550 Msa0863930:intron 30.0%
AATTATCCCATATCAAGTGT+TGG - chr5_4:64032655-64032674 None:intergenic 30.0%
TTTATTCAGTAGTTTCCAGA+AGG + chr5_4:64032826-64032845 Msa0863930:intron 30.0%
!! AAACACATTTTGTTTCTCCT+AGG + chr5_4:64033025-64033044 Msa0863930:intron 30.0%
TCCTAGGTAAACATTATTAC+AGG + chr5_4:64033041-64033060 Msa0863930:intron 30.0%
TCCTGTAATAATGTTTACCT+AGG - chr5_4:64033045-64033064 None:intergenic 30.0%
! CTGAAAATCTGAAATTGATG+AGG + chr5_4:64033084-64033103 Msa0863930:intron 30.0%
TGGAAGTTTGAATATGCAAA+AGG + chr5_4:64033210-64033229 Msa0863930:CDS 30.0%
! TGATAAGGTTGAAGCTGTTT+TGG + chr5_4:64030481-64030500 Msa0863930:intron 35.0%
!!! CATTTTGAAGCTCATGTTGA+AGG - chr5_4:64030544-64030563 None:intergenic 35.0%
!! AAGATCTTTTTGAGCCTTCT+TGG - chr5_4:64030672-64030691 None:intergenic 35.0%
! GAAGGCTCAAAAAGATCTTT+TGG + chr5_4:64030673-64030692 Msa0863930:CDS 35.0%
!! GAATGTTAAGTTGATGTGTG+AGG + chr5_4:64030730-64030749 Msa0863930:CDS 35.0%
AGTGCTTAGCAAAATGAATG+AGG + chr5_4:64030799-64030818 Msa0863930:CDS 35.0%
CAAAATGAATGAGGATTTGG+AGG + chr5_4:64030808-64030827 Msa0863930:CDS 35.0%
! CAAGTTGAAGGATAAAATGG+TGG + chr5_4:64030841-64030860 Msa0863930:CDS 35.0%
! AAGGATAAAATGGTGGAAGA+TGG + chr5_4:64030848-64030867 Msa0863930:CDS 35.0%
TGGAAATGTAGTTCAAGAGT+TGG + chr5_4:64030868-64030887 Msa0863930:CDS 35.0%
TGGAGAAGTTGAAGGAAAAA+AGG + chr5_4:64030888-64030907 Msa0863930:CDS 35.0%
GGAGAAGTTGAAGGAAAAAA+GGG + chr5_4:64030889-64030908 Msa0863930:CDS 35.0%
AAGGAAAAAAGGGTTGAAGA+TGG + chr5_4:64030899-64030918 Msa0863930:CDS 35.0%
!!! TTTTGAAGCTGAAGGGAAAA+AGG + chr5_4:64030972-64030991 Msa0863930:intron 35.0%
! TTTGAAGCTGAAGGGAAAAA+GGG + chr5_4:64030973-64030992 Msa0863930:intron 35.0%
GAAATTGAAGGAGAAAATGG+TGG + chr5_4:64031060-64031079 Msa0863930:CDS 35.0%
TGGAAAAGTTGAAGCAAAAG+TGG + chr5_4:64031149-64031168 Msa0863930:intron 35.0%
GGAAACAGTGAACACAAATT+TGG + chr5_4:64031276-64031295 Msa0863930:CDS 35.0%
! ATTAGTGGATGAGAAACGTA+AGG + chr5_4:64031333-64031352 Msa0863930:CDS 35.0%
! TTAGTGGATGAGAAACGTAA+GGG + chr5_4:64031334-64031353 Msa0863930:CDS 35.0%
CATTAGATGAAAGAGTTGCA+AGG + chr5_4:64031395-64031414 Msa0863930:intron 35.0%
AAAAGACATTGTGGAGAAGT+CGG + chr5_4:64031513-64031532 Msa0863930:CDS 35.0%
CCATCTTCATTTCTTTGCAA+AGG - chr5_4:64031541-64031560 None:intergenic 35.0%
CCTTTGCAAAGAAATGAAGA+TGG + chr5_4:64031538-64031557 Msa0863930:CDS 35.0%
AGTGTGATCGGATAAATGTT+TGG + chr5_4:64031646-64031665 Msa0863930:intron 35.0%
ACAAGAAAAAACACGGTTTC+AGG - chr5_4:64031693-64031712 None:intergenic 35.0%
TAGAGAGGACCATAATATCA+CGG - chr5_4:64031932-64031951 None:intergenic 35.0%
ATATTATGGTCCTCTCTAGA+TGG + chr5_4:64031934-64031953 Msa0863930:intron 35.0%
AATTCACTTTCCATCTAGAG+AGG - chr5_4:64031947-64031966 None:intergenic 35.0%
CATGTAACGTGGAATAAAGA+TGG - chr5_4:64032005-64032024 None:intergenic 35.0%
CATCTTTATTCCACGTTACA+TGG + chr5_4:64032003-64032022 Msa0863930:intron 35.0%
! CCAGAACTAAGATTTGTTTG+AGG - chr5_4:64032115-64032134 None:intergenic 35.0%
CCTCAAACAAATCTTAGTTC+TGG + chr5_4:64032112-64032131 Msa0863930:intron 35.0%
CTTAGGAAGTTAAGTTCATG+AGG + chr5_4:64032213-64032232 Msa0863930:intron 35.0%
TGTCCTTAACGCTGAAATTT+GGG - chr5_4:64032244-64032263 None:intergenic 35.0%
TGGTCTACAATCTATTCTAC+AGG - chr5_4:64032319-64032338 None:intergenic 35.0%
CGGAATAACTAACTCCAAAT+AGG - chr5_4:64032417-64032436 None:intergenic 35.0%
! CTTGTCTCTGGTAAAGTATT+TGG + chr5_4:64032495-64032514 Msa0863930:intron 35.0%
! ATTAGGAAGTGCAAAACAGA+AGG - chr5_4:64032619-64032638 None:intergenic 35.0%
TGATTCTAAACCTGCATGTA+TGG + chr5_4:64032678-64032697 Msa0863930:intron 35.0%
TTGATATGAACCATACATGC+AGG - chr5_4:64032691-64032710 None:intergenic 35.0%
!!! TGTTCCTTCAGACAGTTTTT+TGG + chr5_4:64032712-64032731 Msa0863930:intron 35.0%
TGTTCCAAAAAACTGTCTGA+AGG - chr5_4:64032719-64032738 None:intergenic 35.0%
! TTTCTGCTGACGAAAAGTAT+TGG + chr5_4:64032740-64032759 Msa0863930:intron 35.0%
!! AAGTATTGGAAGGTATACAC+TGG + chr5_4:64032754-64032773 Msa0863930:intron 35.0%
GAAAACTTCGATAAGGAATG+AGG - chr5_4:64032964-64032983 None:intergenic 35.0%
CTGGAAAGAAAACTTCGATA+AGG - chr5_4:64032971-64032990 None:intergenic 35.0%
! GGAGAAAAGAATGTCATTTC+TGG + chr5_4:64033286-64033305 Msa0863930:CDS 35.0%
! TGAAGTGCTATTGATGAACT+TGG - chr5_4:64033340-64033359 None:intergenic 35.0%
AATAGAGGTTTCACTGTTGT+CGG - chr5_4:64033419-64033438 None:intergenic 35.0%
AACAGAGGAACTAGAAATAG+AGG - chr5_4:64033434-64033453 None:intergenic 35.0%
AAGATACGATGAATCAACAG+AGG - chr5_4:64033449-64033468 None:intergenic 35.0%
AAAATGTAGTCTGACATTCC+AGG + chr5_4:64033508-64033527 Msa0863930:exon 35.0%
!!! TTGAAGCTGTTTTGGTGACA+AGG + chr5_4:64030489-64030508 Msa0863930:intron 40.0%
!!! TGAAGCTGTTTTGGTGACAA+GGG + chr5_4:64030490-64030509 Msa0863930:intron 40.0%
!!! TGTTTTGGTGACAAGGGATT+TGG + chr5_4:64030496-64030515 Msa0863930:intron 40.0%
! GGGTGAGATTAACAAGTTGA+AGG + chr5_4:64030829-64030848 Msa0863930:CDS 40.0%
TCAAGAGTTGGAGAAGTTGA+AGG + chr5_4:64030880-64030899 Msa0863930:CDS 40.0%
AGATGGAAATGCACTTGATG+TGG + chr5_4:64030916-64030935 Msa0863930:CDS 40.0%
AAAGAATGCAGAGTTAGAGC+AGG + chr5_4:64030946-64030965 Msa0863930:CDS 40.0%
GTGTGAGGTTGAGAAATTGA+AGG + chr5_4:64031048-64031067 Msa0863930:CDS 40.0%
! AAGGAGAAAATGGTGGAAGA+TGG + chr5_4:64031067-64031086 Msa0863930:CDS 40.0%
GGAGGATGAAAAGAATGCTT+TGG + chr5_4:64031222-64031241 Msa0863930:CDS 40.0%
GATGAAAAGAATGCTTTGGC+TGG + chr5_4:64031226-64031245 Msa0863930:CDS 40.0%
TGGCAATTATAAGCAAGCTG+AGG + chr5_4:64031296-64031315 Msa0863930:CDS 40.0%
AGATGAAAGAGTTGCAAGGT+TGG + chr5_4:64031399-64031418 Msa0863930:intron 40.0%
TGAGGTTGGAAAAGACATTG+TGG + chr5_4:64031504-64031523 Msa0863930:CDS 40.0%
TTTCCATACCGTGAAAGTGA+TGG - chr5_4:64031564-64031583 None:intergenic 40.0%
AGAGAGGACCATAATATCAC+GGG - chr5_4:64031931-64031950 None:intergenic 40.0%
! AAGCTTGTTCCTTCTTCTCT+TGG + chr5_4:64031977-64031996 Msa0863930:intron 40.0%
! AGCTTGTTCCTTCTTCTCTT+GGG + chr5_4:64031978-64031997 Msa0863930:intron 40.0%
! TTTCTTTTGGCCATGTAACG+TGG - chr5_4:64032016-64032035 None:intergenic 40.0%
CATGGCCAAAAGAAAGCTAT+TGG + chr5_4:64032021-64032040 Msa0863930:intron 40.0%
! GAGAGCCAATAGCTTTCTTT+TGG - chr5_4:64032029-64032048 None:intergenic 40.0%
!! AACAAATCTTAGTTCTGGGG+AGG + chr5_4:64032117-64032136 Msa0863930:intron 40.0%
AAGCCCAAATTTCAGCGTTA+AGG + chr5_4:64032238-64032257 Msa0863930:intron 40.0%
CTGTCCTTAACGCTGAAATT+TGG - chr5_4:64032245-64032264 None:intergenic 40.0%
TAAGGACAGAACTATGCTTC+AGG + chr5_4:64032256-64032275 Msa0863930:intron 40.0%
!!! GACCAATTGTGTTTTGATCG+CGG + chr5_4:64032334-64032353 Msa0863930:intron 40.0%
!!! ACCAATTGTGTTTTGATCGC+GGG + chr5_4:64032335-64032354 Msa0863930:intron 40.0%
GTTGAATGGTATACGCAAGA+AGG + chr5_4:64032364-64032383 Msa0863930:intron 40.0%
GTCATCTCAACCACTTTCTT+GGG - chr5_4:64032390-64032409 None:intergenic 40.0%
TGTCATCTCAACCACTTTCT+TGG - chr5_4:64032391-64032410 None:intergenic 40.0%
AAGAAAGTGGTTGAGATGAC+AGG + chr5_4:64032390-64032409 Msa0863930:intron 40.0%
AGAAAGTGGTTGAGATGACA+GGG + chr5_4:64032391-64032410 Msa0863930:intron 40.0%
GTTAGTTAGAAGCTTGTCTC+TGG + chr5_4:64032483-64032502 Msa0863930:intron 40.0%
!! TGCTGACGAAAAGTATTGGA+AGG + chr5_4:64032744-64032763 Msa0863930:intron 40.0%
! ATTGGAAGGTATACACTGGA+AGG + chr5_4:64032758-64032777 Msa0863930:intron 40.0%
GCCATCTCAATTGTTTCACT+GGG - chr5_4:64032784-64032803 None:intergenic 40.0%
TGCCATCTCAATTGTTTCAC+TGG - chr5_4:64032785-64032804 None:intergenic 40.0%
GTGAAACAATTGAGATGGCA+AGG + chr5_4:64032785-64032804 Msa0863930:intron 40.0%
ATATTCAAACTTCCACCAGC+TGG - chr5_4:64033205-64033224 None:intergenic 40.0%
CATAAATCTTGACGACGAAG+AGG + chr5_4:64033243-64033262 Msa0863930:CDS 40.0%
GATGATCTGTGTATGTCTCA+AGG + chr5_4:64033265-64033284 Msa0863930:CDS 40.0%
!! CATTTCTGGAATTTGCGTGA+AGG + chr5_4:64033300-64033319 Msa0863930:CDS 40.0%
GCTATTGATGAACTTGGAGT+TGG - chr5_4:64033334-64033353 None:intergenic 40.0%
GTCAGCAACATTTGCAAACT+TGG - chr5_4:64033371-64033390 None:intergenic 40.0%
ATAGAGGTTTCACTGTTGTC+GGG - chr5_4:64033418-64033437 None:intergenic 40.0%
!!! CAGGAGGTTTTGAAGCTGAA+GGG + chr5_4:64030965-64030984 Msa0863930:intron 45.0%
AAGGGAAAAAGGGTGGAAGA+TGG + chr5_4:64030983-64031002 Msa0863930:intron 45.0%
TCTTGATGAGCTTCGAAGCA+AGG + chr5_4:64031189-64031208 Msa0863930:intron 45.0%
!! TCGAAGCAAGGTTGGTGTAT+TGG + chr5_4:64031201-64031220 Msa0863930:intron 45.0%
!! AAGCAAGGTTGGTGTATTGG+AGG + chr5_4:64031204-64031223 Msa0863930:intron 45.0%
TGAAAGAGTTGCAAGGTTGG+AGG + chr5_4:64031402-64031421 Msa0863930:intron 45.0%
ACCATAGGCATCTACACTCA+CGG - chr5_4:64031443-64031462 None:intergenic 45.0%
!! TATGGTGGTGGAAGCAATGA+GGG + chr5_4:64031457-64031476 Msa0863930:CDS 45.0%
GAAGATGGCCATCACTTTCA+CGG + chr5_4:64031553-64031572 Msa0863930:CDS 45.0%
CCATAATATCACGGGGCTAA+TGG - chr5_4:64031923-64031942 None:intergenic 45.0%
CCATTAGCCCCGTGATATTA+TGG + chr5_4:64031920-64031939 Msa0863930:intron 45.0%
GAGAGGACCATAATATCACG+GGG - chr5_4:64031930-64031949 None:intergenic 45.0%
AAGATGGACCCAAGAGAAGA+AGG - chr5_4:64031989-64032008 None:intergenic 45.0%
!! TAAGGAGCATTGAGAGTGAC+AGG + chr5_4:64032079-64032098 Msa0863930:intron 45.0%
ACCTGCTGTGGAAACTACTT+AGG + chr5_4:64032196-64032215 Msa0863930:intron 45.0%
TCCTAAGTAGTTTCCACAGC+AGG - chr5_4:64032200-64032219 None:intergenic 45.0%
CAGAACTATGCTTCAGGAAC+TGG + chr5_4:64032262-64032281 Msa0863930:intron 45.0%
ACCCGCGATCAAAACACAAT+TGG - chr5_4:64032339-64032358 None:intergenic 45.0%
TTGAGATGACAGGGCCTATT+TGG + chr5_4:64032400-64032419 Msa0863930:intron 45.0%
ACTATTCCTTCTGGACGCTA+CGG - chr5_4:64032437-64032456 None:intergenic 45.0%
GCCCAGTGAAACAATTGAGA+TGG + chr5_4:64032780-64032799 Msa0863930:intron 45.0%
ATTGAGATGGCAAGGTGTAG+CGG + chr5_4:64032793-64032812 Msa0863930:intron 45.0%
! GCTATTTAGGTTAGGCAGAG+AGG + chr5_4:64032867-64032886 Msa0863930:intron 45.0%
! ATCTCTCATTTTGTGCCAGC+TGG + chr5_4:64033187-64033206 Msa0863930:intron 45.0%
TAGAGGTTTCACTGTTGTCG+GGG - chr5_4:64033417-64033436 None:intergenic 45.0%
GCTGACACGAGAACAAGTAG+AGG + chr5_4:64030760-64030779 Msa0863930:intron 50.0%
ACACGAGAACAAGTAGAGGC+TGG + chr5_4:64030764-64030783 Msa0863930:CDS 50.0%
CACGAGAACAAGTAGAGGCT+GGG + chr5_4:64030765-64030784 Msa0863930:CDS 50.0%
AGAACAAGTAGAGGCTGGGA+AGG + chr5_4:64030769-64030788 Msa0863930:CDS 50.0%
GAATGCAGAGTTAGAGCAGG+AGG + chr5_4:64030949-64030968 Msa0863930:CDS 50.0%
!!! GCAGGAGGTTTTGAAGCTGA+AGG + chr5_4:64030964-64030983 Msa0863930:intron 50.0%
GAAGCTGAAGGGAAAAAGGG+TGG + chr5_4:64030976-64030995 Msa0863930:intron 50.0%
! GAGTGATGAGTTGGAGTGTG+AGG + chr5_4:64031033-64031052 Msa0863930:CDS 50.0%
GATGAGCTTCGAAGCAAGGT+TGG + chr5_4:64031193-64031212 Msa0863930:intron 50.0%
AGGCATCTACACTCACGGAA+AGG - chr5_4:64031438-64031457 None:intergenic 50.0%
TCCGTGAGTGTAGATGCCTA+TGG + chr5_4:64031439-64031458 Msa0863930:CDS 50.0%
GTGAGTGTAGATGCCTATGG+TGG + chr5_4:64031442-64031461 Msa0863930:CDS 50.0%
AGTGTAGATGCCTATGGTGG+TGG + chr5_4:64031445-64031464 Msa0863930:CDS 50.0%
CTCATTGCTTCCACCACCAT+AGG - chr5_4:64031458-64031477 None:intergenic 50.0%
!! CTATGGTGGTGGAAGCAATG+AGG + chr5_4:64031456-64031475 Msa0863930:CDS 50.0%
!! ATGGTGGTGGAAGCAATGAG+GGG + chr5_4:64031458-64031477 Msa0863930:CDS 50.0%
!! AGAGGATGTTGGTGGCAATG+AGG + chr5_4:64031486-64031505 Msa0863930:CDS 50.0%
!! GATGTTGGTGGCAATGAGGT+TGG + chr5_4:64031490-64031509 Msa0863930:CDS 50.0%
TGGCCATCACTTTCACGGTA+TGG + chr5_4:64031558-64031577 Msa0863930:intron 50.0%
!!! TGTGTTTTGATCGCGGGTCA+AGG + chr5_4:64032341-64032360 Msa0863930:intron 50.0%
!!! GTGTTTTGATCGCGGGTCAA+GGG + chr5_4:64032342-64032361 Msa0863930:intron 50.0%
GTTATTCCGTAGCGTCCAGA+AGG + chr5_4:64032428-64032447 Msa0863930:intron 50.0%
TTAGGTTAGGCAGAGAGGAG+AGG + chr5_4:64032872-64032891 Msa0863930:intron 50.0%
TAGGTTAGGCAGAGAGGAGA+GGG + chr5_4:64032873-64032892 Msa0863930:intron 50.0%
! AGAGGAGAGGGTGTGAATTG+AGG + chr5_4:64032885-64032904 Msa0863930:intron 50.0%
! TCTCATTTTGTGCCAGCTGG+TGG + chr5_4:64033190-64033209 Msa0863930:intron 50.0%
!! TGGTGGTGGAAGCAATGAGG+GGG + chr5_4:64031459-64031478 Msa0863930:CDS 55.0%
AAGCAATGAGGGGGATGGAG+AGG + chr5_4:64031468-64031487 Msa0863930:CDS 55.0%
GTTGCAGAACAGACCTGCTG+TGG + chr5_4:64032184-64032203 Msa0863930:intron 55.0%
ATCGCGGGTCAAGGGTTGAA+TGG + chr5_4:64032350-64032369 Msa0863930:intron 55.0%
CGCAAGAAGGCCCAAGAAAG+TGG + chr5_4:64032377-64032396 Msa0863930:intron 55.0%
GGTGGAAGCAATGAGGGGGA+TGG + chr5_4:64031463-64031482 Msa0863930:CDS 60.0%
GAGGGGGATGGAGAGGATGT+TGG + chr5_4:64031475-64031494 Msa0863930:CDS 60.0%
GGGGATGGAGAGGATGTTGG+TGG + chr5_4:64031478-64031497 Msa0863930:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 64030480 64033542 64030480 ID=Msa0863930;Name=Msa0863930
chr5_4 mRNA 64030480 64033542 64030480 ID=Msa0863930-mRNA-1;Parent=Msa0863930;Name=Msa0863930-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.16|0.14|1|0|0.14|7|26|396
chr5_4 exon 64030480 64030487 64030480 ID=Msa0863930-mRNA-1:exon:20121;Parent=Msa0863930-mRNA-1
chr5_4 exon 64030577 64030751 64030577 ID=Msa0863930-mRNA-1:exon:20122;Parent=Msa0863930-mRNA-1
chr5_4 exon 64030761 64030970 64030761 ID=Msa0863930-mRNA-1:exon:20123;Parent=Msa0863930-mRNA-1
chr5_4 exon 64030986 64031138 64030986 ID=Msa0863930-mRNA-1:exon:20124;Parent=Msa0863930-mRNA-1
chr5_4 exon 64031211 64031386 64031211 ID=Msa0863930-mRNA-1:exon:20125;Parent=Msa0863930-mRNA-1
chr5_4 exon 64031417 64031574 64031417 ID=Msa0863930-mRNA-1:exon:20126;Parent=Msa0863930-mRNA-1
chr5_4 exon 64033206 64033542 64033206 ID=Msa0863930-mRNA-1:exon:20127;Parent=Msa0863930-mRNA-1
chr5_4 CDS 64030480 64030487 64030480 ID=Msa0863930-mRNA-1:cds;Parent=Msa0863930-mRNA-1
chr5_4 CDS 64030577 64030751 64030577 ID=Msa0863930-mRNA-1:cds;Parent=Msa0863930-mRNA-1
chr5_4 CDS 64030761 64030970 64030761 ID=Msa0863930-mRNA-1:cds;Parent=Msa0863930-mRNA-1
chr5_4 CDS 64030986 64031138 64030986 ID=Msa0863930-mRNA-1:cds;Parent=Msa0863930-mRNA-1
chr5_4 CDS 64031211 64031386 64031211 ID=Msa0863930-mRNA-1:cds;Parent=Msa0863930-mRNA-1
chr5_4 CDS 64031417 64031574 64031417 ID=Msa0863930-mRNA-1:cds;Parent=Msa0863930-mRNA-1
chr5_4 CDS 64033206 64033516 64033206 ID=Msa0863930-mRNA-1:cds;Parent=Msa0863930-mRNA-1
chr5_4 three_prime_UTR 64033517 64033542 64033517 ID=Msa0863930-mRNA-1:three_prime_utr;Parent=Msa0863930-mRNA-1
Gene Sequence

>Msa0863930

ATGATAAGGTTACATGTAGAGGAAGAGCTTAACAAAAGAGATCAAATTTGTCAGAAATGGACCAAATTGCAAGAAACTCATCAAGCTCTTTTGAAAGATTCCAAGAAGGCTCAAAAAGATCTTTTGGAAGCTAATGGAAACATTGATCTTCTAAGAAAGAAGAATGTTAAGTTGATGTGTGAGCTGACACGAGAACAAGTAGAGGCTGGGAAGGAATTTAAAGTGCTTAGCAAAATGAATGAGGATTTGGAGGGTGAGATTAACAAGTTGAAGGATAAAATGGTGGAAGATGGAAATGTAGTTCAAGAGTTGGAGAAGTTGAAGGAAAAAAGGGTTGAAGATGGAAATGCACTTGATGTGGAGAGAAGAAAGAATGCAGAGTTAGAGCAGGAGGGAAAAAGGGTGGAAGATGGCAATGCAATTGATATGCTAAAAACAAAGAGTGATGAGTTGGAGTGTGAGGTTGAGAAATTGAAGGAGAAAATGGTGGAAGATGGAAATGCATTTGATGTGCTAAAAGGAAAGAAGTGTGAGCTAGAATCTAAAGTTGGTGTATTGGAGGATGAAAAGAATGCTTTGGCTGGAATTGAGATTAAAAATGGCGAATTGAAGGAAACAGTGAACACAAATTTGGCAATTATAAGCAAGCTGAGGAACGAAAACAGAAAATTAGTGGATGAGAAACGTAAGGGTGAGATCTTACTCGATTCTTTGAACACAAAGTTGGAGGACGATTTTGACCTTTCCGTGAGTGTAGATGCCTATGGTGGTGGAAGCAATGAGGGGGATGGAGAGGATGTTGGTGGCAATGAGGTTGGAAAAGACATTGTGGAGAAGTCGGCTCCTTTGCAAAGAAATGAAGATGGCCATCACTTTCACGCTGGTGGAAGTTTGAATATGCAAAAGGATGTTGAGATCATAAATCTTGACGACGAAGAGGATGATCTGTGTATGTCTCAAGGAGAAAAGAATGTCATTTCTGGAATTTGCGTGAAGGATGAGCATCCAACTCCAAGTTCATCAATAGCACTTCAACAAGAAACCAAGTTTGCAAATGTTGCTGACACGATCAAGAGAAAACATTTTCTCCCCGACAACAGTGAAACCTCTATTTCTAGTTCCTCTGTTGATTCATCGTATCTTGATACTATAATATCTGTGGTATCACAACCAAAAAAGACTAAAATGTAG

Protein sequence

>Msa0863930

MIRLHVEEELNKRDQICQKWTKLQETHQALLKDSKKAQKDLLEANGNIDLLRKKNVKLMCELTREQVEAGKEFKVLSKMNEDLEGEINKLKDKMVEDGNVVQELEKLKEKRVEDGNALDVERRKNAELEQEGKRVEDGNAIDMLKTKSDELECEVEKLKEKMVEDGNAFDVLKGKKCELESKVGVLEDEKNALAGIEIKNGELKETVNTNLAIISKLRNENRKLVDEKRKGEILLDSLNTKLEDDFDLSVSVDAYGGGSNEGDGEDVGGNEVGKDIVEKSAPLQRNEDGHHFHAGGSLNMQKDVEIINLDDEEDDLCMSQGEKNVISGICVKDEHPTPSSSIALQQETKFANVADTIKRKHFLPDNSETSISSSSVDSSYLDTIISVVSQPKKTKM*