Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956420 | XP_013443333.1 | 73.021 | 341 | 59 | 3 | 1 | 308 | 1 | 341 | 1.50e-139 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956420 | sp|Q9SCW4|HFB2A_ARATH | 35.366 | 328 | 121 | 11 | 26 | 307 | 16 | 298 | 9.18e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0910870 | Msa0956420 | 0.803916 | 2.773587e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956420 | MtrunA17_Chr6g0472421 | 73.021 | 341 | 59 | 3 | 1 | 308 | 1 | 341 | 1.38e-143 | 408 |
| Msa0956420 | MtrunA17_Chr1g0203601 | 42.229 | 341 | 124 | 12 | 1 | 307 | 1 | 302 | 1.39e-55 | 182 |
| Msa0956420 | MtrunA17_Chr5g0397881 | 36.278 | 317 | 114 | 10 | 7 | 253 | 5 | 303 | 4.89e-36 | 132 |
| Msa0956420 | MtrunA17_Chr3g0134031 | 34.222 | 225 | 89 | 7 | 23 | 196 | 14 | 230 | 1.36e-23 | 99.4 |
| Msa0956420 | MtrunA17_Chr5g0402291 | 31.500 | 200 | 102 | 3 | 26 | 197 | 2 | 194 | 2.22e-18 | 83.6 |
| Msa0956420 | MtrunA17_Chr7g0257331 | 32.461 | 191 | 70 | 5 | 31 | 193 | 20 | 179 | 7.85e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0956420 | AT5G62020.1 | 35.366 | 328 | 121 | 11 | 26 | 307 | 16 | 298 | 9.33e-43 | 149 |
| Msa0956420 | AT4G11660.1 | 33.628 | 339 | 142 | 10 | 25 | 296 | 51 | 373 | 6.40e-33 | 125 |
| Msa0956420 | AT1G46264.1 | 32.870 | 216 | 82 | 5 | 28 | 194 | 29 | 230 | 3.97e-23 | 98.2 |
| Msa0956420 | AT4G36990.1 | 30.769 | 208 | 89 | 5 | 21 | 193 | 2 | 189 | 2.34e-18 | 84.0 |
| Msa0956420 | AT2G41690.1 | 29.016 | 193 | 96 | 5 | 31 | 195 | 38 | 217 | 2.28e-12 | 66.2 |
| Msa0956420 | AT3G22830.1 | 37.931 | 116 | 42 | 3 | 15 | 101 | 43 | 157 | 1.79e-11 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCAAGCGGCGGATT+TGG | 0.255860 | 6_3:-63704012 | None:intergenic |
| CGAGAAAACGGTTGTGAAAA+TGG | 0.282774 | 6_3:+63704114 | Msa0956420:CDS |
| ATGGATCCACGTTTATTGTT+TGG | 0.338781 | 6_3:+63703289 | Msa0956420:CDS |
| GAAATGAATCCGAAGCTATT+CGG | 0.407926 | 6_3:+63704066 | Msa0956420:CDS |
| GGGTGTTGCAACGGTGGTTG+TGG | 0.423416 | 6_3:-63703182 | None:intergenic |
| CATGGCTCCTTCACCAGCTC+CGG | 0.436113 | 6_3:+63703138 | None:intergenic |
| AGCTCCGCTGGTGCTCGTGC+TGG | 0.436895 | 6_3:-63703814 | None:intergenic |
| AAGCTATTCGGTGTGGCGAT+TGG | 0.446939 | 6_3:+63704078 | Msa0956420:CDS |
| TTTGAAAATTCCCACCGGTC+AGG | 0.467906 | 6_3:-63703546 | None:intergenic |
| TGGATTCACCGCCGTCATAC+CGG | 0.469995 | 6_3:-63703992 | None:intergenic |
| GCTTGATTTGATGCCGGCGG+TGG | 0.475803 | 6_3:+63704023 | Msa0956420:CDS |
| CTCGTCGATGATAAATTTCG+TGG | 0.494970 | 6_3:+63703259 | Msa0956420:CDS |
| TCTTTCACCGGTACTGTTGA+CGG | 0.500426 | 6_3:+63703717 | Msa0956420:CDS |
| GCAAAACGAGTTCGAGAAAA+CGG | 0.504397 | 6_3:+63704102 | Msa0956420:CDS |
| TGATGCCGGCGGTGGCAAAA+CGG | 0.508254 | 6_3:+63704031 | Msa0956420:CDS |
| AAATTACTAGCAAAGACAGT+AGG | 0.509112 | 6_3:-63703315 | None:intergenic |
| GCTACATCAACCTGGTTCTA+CGG | 0.510688 | 6_3:+63704164 | Msa0956420:CDS |
| TAAATTTCGTGGAACGAAGA+TGG | 0.513289 | 6_3:+63703270 | Msa0956420:CDS |
| ATCGCCACACCGAATAGCTT+CGG | 0.514928 | 6_3:-63704075 | None:intergenic |
| GGCTCCTTCACCAGCTCCGG+TGG | 0.518505 | 6_3:+63703141 | Msa0956420:CDS |
| GCTCAAGGAAGTAGAGAATC+CGG | 0.523566 | 6_3:+63703973 | Msa0956420:CDS |
| GGACGTGAAATCTGAACCGT+TGG | 0.523870 | 6_3:+63704185 | Msa0956420:CDS |
| GATTTCACGTCCGTAGAACC+AGG | 0.525961 | 6_3:-63704174 | None:intergenic |
| GAGTTTGACGGTGAAATCAT+CGG | 0.530218 | 6_3:-63703757 | None:intergenic |
| GACGGTTGCAGTTCTTTCAC+CGG | 0.531948 | 6_3:+63703705 | Msa0956420:CDS |
| GGTATTACCGTCAACAGTAC+CGG | 0.536641 | 6_3:-63703724 | None:intergenic |
| GCGGTGGCAAAACGGAGCTC+CGG | 0.538825 | 6_3:+63704039 | Msa0956420:CDS |
| CTCAAGGGTGGGTGTTGCAA+CGG | 0.547090 | 6_3:-63703191 | None:intergenic |
| TCCGCCGCTTGATTTGATGC+CGG | 0.547623 | 6_3:+63704017 | Msa0956420:CDS |
| AAGTAGAGAATCCGGTATGA+CGG | 0.547644 | 6_3:+63703981 | Msa0956420:CDS |
| CAAACAGACGGTGGTGCTCA+AGG | 0.552332 | 6_3:+63703958 | Msa0956420:CDS |
| TTCGCCAGCACGAGCACCAG+CGG | 0.553020 | 6_3:+63703810 | Msa0956420:CDS |
| ACAGACACAGACGGCGGTGA+AGG | 0.555353 | 6_3:-63703639 | None:intergenic |
| GAATAGATCTCTGAGACTCA+AGG | 0.566281 | 6_3:-63703207 | None:intergenic |
| TCGACGAAAACGAGAGATTG+AGG | 0.567733 | 6_3:+63703839 | Msa0956420:CDS |
| AATAGATCTCTGAGACTCAA+GGG | 0.568049 | 6_3:-63703206 | None:intergenic |
| CTTCGGATTCATTTCCTCGC+CGG | 0.573414 | 6_3:-63704058 | None:intergenic |
| AATTACTAGCAAAGACAGTA+GGG | 0.574678 | 6_3:-63703314 | None:intergenic |
| GAAATCATCGGCATCGCCGT+TGG | 0.579266 | 6_3:-63703745 | None:intergenic |
| CTGTTGCGGCTACATCAACC+TGG | 0.584251 | 6_3:+63704156 | Msa0956420:CDS |
| TCACGTTCTTCACAATCCAA+CGG | 0.603923 | 6_3:-63704201 | None:intergenic |
| GAGAGGATGATACGCTGTTG+CGG | 0.609437 | 6_3:+63704142 | Msa0956420:CDS |
| TTAGAAAAGTAGTACCTGAC+CGG | 0.612069 | 6_3:+63703532 | Msa0956420:CDS |
| ACCGCCGGCATCAAATCAAG+CGG | 0.614650 | 6_3:-63704021 | None:intergenic |
| CACGAAATTTATCATCGACG+AGG | 0.614867 | 6_3:-63703258 | None:intergenic |
| AAGGGTGGGTGTTGCAACGG+TGG | 0.622209 | 6_3:-63703188 | None:intergenic |
| AACAATAACAGTCAAACAGA+CGG | 0.625879 | 6_3:+63703946 | Msa0956420:CDS |
| GCCGCTTGATTTGATGCCGG+CGG | 0.632055 | 6_3:+63704020 | Msa0956420:CDS |
| ACGCTTTCTAGCTGTAGTAG+CGG | 0.632161 | 6_3:-63703667 | None:intergenic |
| AAAAGTAGTACCTGACCGGT+GGG | 0.635759 | 6_3:+63703536 | Msa0956420:CDS |
| GATCTCTGAGACTCAAGGGT+GGG | 0.636992 | 6_3:-63703202 | None:intergenic |
| ACTCATTTGAAAATTCCCAC+CGG | 0.642486 | 6_3:-63703551 | None:intergenic |
| GCGGCAGAAACAGACACAGA+CGG | 0.648280 | 6_3:-63703648 | None:intergenic |
| GAAAAGTAGTACCTGACCGG+TGG | 0.652133 | 6_3:+63703535 | Msa0956420:CDS |
| TTGTGAAAATGGTGAAAGAG+AGG | 0.661829 | 6_3:+63704125 | Msa0956420:CDS |
| TAGAGAATCCGGTATGACGG+CGG | 0.661957 | 6_3:+63703984 | Msa0956420:CDS |
| GGCAAAACGGAGCTCCGGCG+AGG | 0.665647 | 6_3:+63704044 | Msa0956420:CDS |
| CGTAGAAACTACAACAGCGA+CGG | 0.675307 | 6_3:+63703687 | Msa0956420:CDS |
| CCAGCTCCGGTGGAAAACAA+CGG | 0.682827 | 6_3:+63703151 | Msa0956420:CDS |
| ACTGTTGACGGTAATACCAA+CGG | 0.686195 | 6_3:+63703729 | Msa0956420:CDS |
| AGATCTCTGAGACTCAAGGG+TGG | 0.688159 | 6_3:-63703203 | None:intergenic |
| AGGGTTCCAAACAATAAACG+TGG | 0.693378 | 6_3:-63703295 | None:intergenic |
| GAATCCGAAGCTATTCGGTG+TGG | 0.707189 | 6_3:+63704071 | Msa0956420:CDS |
| GTGATAATGATCGAACAGCG+TGG | 0.735026 | 6_3:+63704220 | Msa0956420:CDS |
| AATAACAGTCAAACAGACGG+TGG | 0.748040 | 6_3:+63703949 | Msa0956420:CDS |
| GCAGAAACAGACACAGACGG+CGG | 0.769997 | 6_3:-63703645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGTGTTTGAAATATTT+AGG | - | chr6_3:63703345-63703364 | None:intergenic | 15.0% |
| !! | CATAGAAGAAAATAAAATAT+AGG | - | chr6_3:63703420-63703439 | None:intergenic | 15.0% |
| !!! | TTATTGTGTTTGAAATATTT+AGG | - | chr6_3:63703345-63703364 | None:intergenic | 15.0% |
| !! | CATAGAAGAAAATAAAATAT+AGG | - | chr6_3:63703420-63703439 | None:intergenic | 15.0% |
| !!! | TTATATGTTTTTGTCAGAAA+CGG | - | chr6_3:63703238-63703257 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATTTTTTTTGCA+GGG | + | chr6_3:63703507-63703526 | Msa0956420:intron | 20.0% |
| !!! | TTATATGTTTTTGTCAGAAA+CGG | - | chr6_3:63703238-63703257 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATTTTTTTTGCA+GGG | + | chr6_3:63703507-63703526 | Msa0956420:intron | 20.0% |
| !!! | GTTTTGTTGATTTTTTTTGC+AGG | + | chr6_3:63703506-63703525 | Msa0956420:intron | 25.0% |
| !!! | GTTTTGTTGATTTTTTTTGC+AGG | + | chr6_3:63703506-63703525 | Msa0956420:intron | 25.0% |
| AATTACTAGCAAAGACAGTA+GGG | - | chr6_3:63703317-63703336 | None:intergenic | 30.0% | |
| AAATTACTAGCAAAGACAGT+AGG | - | chr6_3:63703318-63703337 | None:intergenic | 30.0% | |
| ! | TCAAATGAGTATTTTCGAAG+AGG | + | chr6_3:63703564-63703583 | Msa0956420:CDS | 30.0% |
| ! | ATTTTCGAAGAGGAGAAAAA+CGG | + | chr6_3:63703574-63703593 | Msa0956420:CDS | 30.0% |
| AACAATAACAGTCAAACAGA+CGG | + | chr6_3:63703946-63703965 | Msa0956420:CDS | 30.0% | |
| AATTACTAGCAAAGACAGTA+GGG | - | chr6_3:63703317-63703336 | None:intergenic | 30.0% | |
| AAATTACTAGCAAAGACAGT+AGG | - | chr6_3:63703318-63703337 | None:intergenic | 30.0% | |
| ! | TCAAATGAGTATTTTCGAAG+AGG | + | chr6_3:63703564-63703583 | Msa0956420:CDS | 30.0% |
| ! | ATTTTCGAAGAGGAGAAAAA+CGG | + | chr6_3:63703574-63703593 | Msa0956420:CDS | 30.0% |
| AACAATAACAGTCAAACAGA+CGG | + | chr6_3:63703946-63703965 | Msa0956420:CDS | 30.0% | |
| !! | AATAGATCTCTGAGACTCAA+GGG | - | chr6_3:63703209-63703228 | None:intergenic | 35.0% |
| TAAATTTCGTGGAACGAAGA+TGG | + | chr6_3:63703270-63703289 | Msa0956420:CDS | 35.0% | |
| ATGGATCCACGTTTATTGTT+TGG | + | chr6_3:63703289-63703308 | Msa0956420:CDS | 35.0% | |
| TTAGAAAAGTAGTACCTGAC+CGG | + | chr6_3:63703532-63703551 | Msa0956420:CDS | 35.0% | |
| ACTCATTTGAAAATTCCCAC+CGG | - | chr6_3:63703554-63703573 | None:intergenic | 35.0% | |
| ! | GGCTTTTATGTGAGATTCAA+CGG | + | chr6_3:63703595-63703614 | Msa0956420:CDS | 35.0% |
| ! | TTTTATGTGAGATTCAACGG+AGG | + | chr6_3:63703598-63703617 | Msa0956420:CDS | 35.0% |
| GAAATGAATCCGAAGCTATT+CGG | + | chr6_3:63704066-63704085 | Msa0956420:CDS | 35.0% | |
| TTGTGAAAATGGTGAAAGAG+AGG | + | chr6_3:63704125-63704144 | Msa0956420:CDS | 35.0% | |
| !! | AATAGATCTCTGAGACTCAA+GGG | - | chr6_3:63703209-63703228 | None:intergenic | 35.0% |
| TAAATTTCGTGGAACGAAGA+TGG | + | chr6_3:63703270-63703289 | Msa0956420:CDS | 35.0% | |
| ATGGATCCACGTTTATTGTT+TGG | + | chr6_3:63703289-63703308 | Msa0956420:CDS | 35.0% | |
| TTAGAAAAGTAGTACCTGAC+CGG | + | chr6_3:63703532-63703551 | Msa0956420:CDS | 35.0% | |
| ACTCATTTGAAAATTCCCAC+CGG | - | chr6_3:63703554-63703573 | None:intergenic | 35.0% | |
| ! | GGCTTTTATGTGAGATTCAA+CGG | + | chr6_3:63703595-63703614 | Msa0956420:CDS | 35.0% |
| ! | TTTTATGTGAGATTCAACGG+AGG | + | chr6_3:63703598-63703617 | Msa0956420:CDS | 35.0% |
| GAAATGAATCCGAAGCTATT+CGG | + | chr6_3:63704066-63704085 | Msa0956420:CDS | 35.0% | |
| TTGTGAAAATGGTGAAAGAG+AGG | + | chr6_3:63704125-63704144 | Msa0956420:CDS | 35.0% | |
| !! | GAATAGATCTCTGAGACTCA+AGG | - | chr6_3:63703210-63703229 | None:intergenic | 40.0% |
| ! | GTTTTTGTCAGAAACGGTGT+AGG | - | chr6_3:63703232-63703251 | None:intergenic | 40.0% |
| CACGAAATTTATCATCGACG+AGG | - | chr6_3:63703261-63703280 | None:intergenic | 40.0% | |
| CTCGTCGATGATAAATTTCG+TGG | + | chr6_3:63703259-63703278 | Msa0956420:CDS | 40.0% | |
| AGGGTTCCAAACAATAAACG+TGG | - | chr6_3:63703298-63703317 | None:intergenic | 40.0% | |
| !! | ATTGAGTTGACGAACAAAGC+TGG | - | chr6_3:63703373-63703392 | None:intergenic | 40.0% |
| ATAGACGAATTGAAGCGACA+AGG | + | chr6_3:63703470-63703489 | Msa0956420:intron | 40.0% | |
| TAGACGAATTGAAGCGACAA+GGG | + | chr6_3:63703471-63703490 | Msa0956420:intron | 40.0% | |
| ACTGTTGACGGTAATACCAA+CGG | + | chr6_3:63703729-63703748 | Msa0956420:CDS | 40.0% | |
| GAGTTTGACGGTGAAATCAT+CGG | - | chr6_3:63703760-63703779 | None:intergenic | 40.0% | |
| ATGATTTCACCGTCAAACTC+CGG | + | chr6_3:63703760-63703779 | Msa0956420:intron | 40.0% | |
| AATAACAGTCAAACAGACGG+TGG | + | chr6_3:63703949-63703968 | Msa0956420:CDS | 40.0% | |
| AAGTAGAGAATCCGGTATGA+CGG | + | chr6_3:63703981-63704000 | Msa0956420:CDS | 40.0% | |
| GCAAAACGAGTTCGAGAAAA+CGG | + | chr6_3:63704102-63704121 | Msa0956420:CDS | 40.0% | |
| CGAGAAAACGGTTGTGAAAA+TGG | + | chr6_3:63704114-63704133 | Msa0956420:CDS | 40.0% | |
| TCACGTTCTTCACAATCCAA+CGG | - | chr6_3:63704204-63704223 | None:intergenic | 40.0% | |
| !! | GAATAGATCTCTGAGACTCA+AGG | - | chr6_3:63703210-63703229 | None:intergenic | 40.0% |
| ! | GTTTTTGTCAGAAACGGTGT+AGG | - | chr6_3:63703232-63703251 | None:intergenic | 40.0% |
| CACGAAATTTATCATCGACG+AGG | - | chr6_3:63703261-63703280 | None:intergenic | 40.0% | |
| CTCGTCGATGATAAATTTCG+TGG | + | chr6_3:63703259-63703278 | Msa0956420:CDS | 40.0% | |
| AGGGTTCCAAACAATAAACG+TGG | - | chr6_3:63703298-63703317 | None:intergenic | 40.0% | |
| !! | ATTGAGTTGACGAACAAAGC+TGG | - | chr6_3:63703373-63703392 | None:intergenic | 40.0% |
| ATAGACGAATTGAAGCGACA+AGG | + | chr6_3:63703470-63703489 | Msa0956420:intron | 40.0% | |
| TAGACGAATTGAAGCGACAA+GGG | + | chr6_3:63703471-63703490 | Msa0956420:intron | 40.0% | |
| ACTGTTGACGGTAATACCAA+CGG | + | chr6_3:63703729-63703748 | Msa0956420:CDS | 40.0% | |
| GAGTTTGACGGTGAAATCAT+CGG | - | chr6_3:63703760-63703779 | None:intergenic | 40.0% | |
| ATGATTTCACCGTCAAACTC+CGG | + | chr6_3:63703760-63703779 | Msa0956420:intron | 40.0% | |
| AATAACAGTCAAACAGACGG+TGG | + | chr6_3:63703949-63703968 | Msa0956420:CDS | 40.0% | |
| AAGTAGAGAATCCGGTATGA+CGG | + | chr6_3:63703981-63704000 | Msa0956420:CDS | 40.0% | |
| GCAAAACGAGTTCGAGAAAA+CGG | + | chr6_3:63704102-63704121 | Msa0956420:CDS | 40.0% | |
| CGAGAAAACGGTTGTGAAAA+TGG | + | chr6_3:63704114-63704133 | Msa0956420:CDS | 40.0% | |
| TCACGTTCTTCACAATCCAA+CGG | - | chr6_3:63704204-63704223 | None:intergenic | 40.0% | |
| !! | GTTTCTCCGTTGTTTTCCAC+CGG | - | chr6_3:63703160-63703179 | None:intergenic | 45.0% |
| AAAAGTAGTACCTGACCGGT+GGG | + | chr6_3:63703536-63703555 | Msa0956420:CDS | 45.0% | |
| TTTGAAAATTCCCACCGGTC+AGG | - | chr6_3:63703549-63703568 | None:intergenic | 45.0% | |
| !! | ACGCTTTCTAGCTGTAGTAG+CGG | - | chr6_3:63703670-63703689 | None:intergenic | 45.0% |
| CGTAGAAACTACAACAGCGA+CGG | + | chr6_3:63703687-63703706 | Msa0956420:CDS | 45.0% | |
| TCTTTCACCGGTACTGTTGA+CGG | + | chr6_3:63703717-63703736 | Msa0956420:CDS | 45.0% | |
| GGTATTACCGTCAACAGTAC+CGG | - | chr6_3:63703727-63703746 | None:intergenic | 45.0% | |
| TGTTCTTCACCGGAGTTTGA+CGG | - | chr6_3:63703772-63703791 | None:intergenic | 45.0% | |
| CGATATCACCTGTTCTTCAC+CGG | - | chr6_3:63703782-63703801 | None:intergenic | 45.0% | |
| TCGACGAAAACGAGAGATTG+AGG | + | chr6_3:63703839-63703858 | Msa0956420:CDS | 45.0% | |
| GCTCAAGGAAGTAGAGAATC+CGG | + | chr6_3:63703973-63703992 | Msa0956420:CDS | 45.0% | |
| ! | ATCAAATCAAGCGGCGGATT+TGG | - | chr6_3:63704015-63704034 | None:intergenic | 45.0% |
| !! | GCTACATCAACCTGGTTCTA+CGG | + | chr6_3:63704164-63704183 | Msa0956420:CDS | 45.0% |
| ! | GTGATAATGATCGAACAGCG+TGG | + | chr6_3:63704220-63704239 | Msa0956420:CDS | 45.0% |
| !! | GTTTCTCCGTTGTTTTCCAC+CGG | - | chr6_3:63703160-63703179 | None:intergenic | 45.0% |
| AAAAGTAGTACCTGACCGGT+GGG | + | chr6_3:63703536-63703555 | Msa0956420:CDS | 45.0% | |
| TTTGAAAATTCCCACCGGTC+AGG | - | chr6_3:63703549-63703568 | None:intergenic | 45.0% | |
| !! | ACGCTTTCTAGCTGTAGTAG+CGG | - | chr6_3:63703670-63703689 | None:intergenic | 45.0% |
| CGTAGAAACTACAACAGCGA+CGG | + | chr6_3:63703687-63703706 | Msa0956420:CDS | 45.0% | |
| TCTTTCACCGGTACTGTTGA+CGG | + | chr6_3:63703717-63703736 | Msa0956420:CDS | 45.0% | |
| GGTATTACCGTCAACAGTAC+CGG | - | chr6_3:63703727-63703746 | None:intergenic | 45.0% | |
| TGTTCTTCACCGGAGTTTGA+CGG | - | chr6_3:63703772-63703791 | None:intergenic | 45.0% | |
| CGATATCACCTGTTCTTCAC+CGG | - | chr6_3:63703782-63703801 | None:intergenic | 45.0% | |
| TCGACGAAAACGAGAGATTG+AGG | + | chr6_3:63703839-63703858 | Msa0956420:CDS | 45.0% | |
| GCTCAAGGAAGTAGAGAATC+CGG | + | chr6_3:63703973-63703992 | Msa0956420:CDS | 45.0% | |
| ! | ATCAAATCAAGCGGCGGATT+TGG | - | chr6_3:63704015-63704034 | None:intergenic | 45.0% |
| !! | GCTACATCAACCTGGTTCTA+CGG | + | chr6_3:63704164-63704183 | Msa0956420:CDS | 45.0% |
| ! | GTGATAATGATCGAACAGCG+TGG | + | chr6_3:63704220-63704239 | Msa0956420:CDS | 45.0% |
| !! | GATCTCTGAGACTCAAGGGT+GGG | - | chr6_3:63703205-63703224 | None:intergenic | 50.0% |
| !! | AGATCTCTGAGACTCAAGGG+TGG | - | chr6_3:63703206-63703225 | None:intergenic | 50.0% |
| GAAAAGTAGTACCTGACCGG+TGG | + | chr6_3:63703535-63703554 | Msa0956420:CDS | 50.0% | |
| GACGGTTGCAGTTCTTTCAC+CGG | + | chr6_3:63703705-63703724 | Msa0956420:CDS | 50.0% | |
| GTCAAACTCCGGTGAAGAAC+AGG | + | chr6_3:63703771-63703790 | Msa0956420:intron | 50.0% | |
| TAGAGAATCCGGTATGACGG+CGG | + | chr6_3:63703984-63704003 | Msa0956420:CDS | 50.0% | |
| CTTCGGATTCATTTCCTCGC+CGG | - | chr6_3:63704061-63704080 | None:intergenic | 50.0% | |
| ! | GAATCCGAAGCTATTCGGTG+TGG | + | chr6_3:63704071-63704090 | Msa0956420:CDS | 50.0% |
| ATCGCCACACCGAATAGCTT+CGG | - | chr6_3:63704078-63704097 | None:intergenic | 50.0% | |
| !! | AAGCTATTCGGTGTGGCGAT+TGG | + | chr6_3:63704078-63704097 | Msa0956420:CDS | 50.0% |
| GAGAGGATGATACGCTGTTG+CGG | + | chr6_3:63704142-63704161 | Msa0956420:CDS | 50.0% | |
| GATTTCACGTCCGTAGAACC+AGG | - | chr6_3:63704177-63704196 | None:intergenic | 50.0% | |
| GGACGTGAAATCTGAACCGT+TGG | + | chr6_3:63704185-63704204 | Msa0956420:CDS | 50.0% | |
| !! | GATCTCTGAGACTCAAGGGT+GGG | - | chr6_3:63703205-63703224 | None:intergenic | 50.0% |
| !! | AGATCTCTGAGACTCAAGGG+TGG | - | chr6_3:63703206-63703225 | None:intergenic | 50.0% |
| GAAAAGTAGTACCTGACCGG+TGG | + | chr6_3:63703535-63703554 | Msa0956420:CDS | 50.0% | |
| GACGGTTGCAGTTCTTTCAC+CGG | + | chr6_3:63703705-63703724 | Msa0956420:CDS | 50.0% | |
| GTCAAACTCCGGTGAAGAAC+AGG | + | chr6_3:63703771-63703790 | Msa0956420:intron | 50.0% | |
| TAGAGAATCCGGTATGACGG+CGG | + | chr6_3:63703984-63704003 | Msa0956420:CDS | 50.0% | |
| CTTCGGATTCATTTCCTCGC+CGG | - | chr6_3:63704061-63704080 | None:intergenic | 50.0% | |
| ! | GAATCCGAAGCTATTCGGTG+TGG | + | chr6_3:63704071-63704090 | Msa0956420:CDS | 50.0% |
| ATCGCCACACCGAATAGCTT+CGG | - | chr6_3:63704078-63704097 | None:intergenic | 50.0% | |
| !! | AAGCTATTCGGTGTGGCGAT+TGG | + | chr6_3:63704078-63704097 | Msa0956420:CDS | 50.0% |
| GAGAGGATGATACGCTGTTG+CGG | + | chr6_3:63704142-63704161 | Msa0956420:CDS | 50.0% | |
| GATTTCACGTCCGTAGAACC+AGG | - | chr6_3:63704177-63704196 | None:intergenic | 50.0% | |
| GGACGTGAAATCTGAACCGT+TGG | + | chr6_3:63704185-63704204 | Msa0956420:CDS | 50.0% | |
| ! | TTTTCCACCGGAGCTGGTGA+AGG | - | chr6_3:63703148-63703167 | None:intergenic | 55.0% |
| CCAGCTCCGGTGGAAAACAA+CGG | + | chr6_3:63703151-63703170 | Msa0956420:CDS | 55.0% | |
| ! | CTCAAGGGTGGGTGTTGCAA+CGG | - | chr6_3:63703194-63703213 | None:intergenic | 55.0% |
| GCAGAAACAGACACAGACGG+CGG | - | chr6_3:63703648-63703667 | None:intergenic | 55.0% | |
| GCGGCAGAAACAGACACAGA+CGG | - | chr6_3:63703651-63703670 | None:intergenic | 55.0% | |
| GAAATCATCGGCATCGCCGT+TGG | - | chr6_3:63703748-63703767 | None:intergenic | 55.0% | |
| ! | TTTTCGTCGAGAAGCTCCGC+TGG | - | chr6_3:63703829-63703848 | None:intergenic | 55.0% |
| CAAACAGACGGTGGTGCTCA+AGG | + | chr6_3:63703958-63703977 | Msa0956420:CDS | 55.0% | |
| TGGATTCACCGCCGTCATAC+CGG | - | chr6_3:63703995-63704014 | None:intergenic | 55.0% | |
| ! | TCCGCCGCTTGATTTGATGC+CGG | + | chr6_3:63704017-63704036 | Msa0956420:CDS | 55.0% |
| ACCGCCGGCATCAAATCAAG+CGG | - | chr6_3:63704024-63704043 | None:intergenic | 55.0% | |
| CTGTTGCGGCTACATCAACC+TGG | + | chr6_3:63704156-63704175 | Msa0956420:CDS | 55.0% | |
| ! | TTTTCCACCGGAGCTGGTGA+AGG | - | chr6_3:63703148-63703167 | None:intergenic | 55.0% |
| CCAGCTCCGGTGGAAAACAA+CGG | + | chr6_3:63703151-63703170 | Msa0956420:CDS | 55.0% | |
| ! | CTCAAGGGTGGGTGTTGCAA+CGG | - | chr6_3:63703194-63703213 | None:intergenic | 55.0% |
| GCAGAAACAGACACAGACGG+CGG | - | chr6_3:63703648-63703667 | None:intergenic | 55.0% | |
| GCGGCAGAAACAGACACAGA+CGG | - | chr6_3:63703651-63703670 | None:intergenic | 55.0% | |
| GAAATCATCGGCATCGCCGT+TGG | - | chr6_3:63703748-63703767 | None:intergenic | 55.0% | |
| ! | TTTTCGTCGAGAAGCTCCGC+TGG | - | chr6_3:63703829-63703848 | None:intergenic | 55.0% |
| CAAACAGACGGTGGTGCTCA+AGG | + | chr6_3:63703958-63703977 | Msa0956420:CDS | 55.0% | |
| TGGATTCACCGCCGTCATAC+CGG | - | chr6_3:63703995-63704014 | None:intergenic | 55.0% | |
| ! | TCCGCCGCTTGATTTGATGC+CGG | + | chr6_3:63704017-63704036 | Msa0956420:CDS | 55.0% |
| ACCGCCGGCATCAAATCAAG+CGG | - | chr6_3:63704024-63704043 | None:intergenic | 55.0% | |
| CTGTTGCGGCTACATCAACC+TGG | + | chr6_3:63704156-63704175 | Msa0956420:CDS | 55.0% | |
| !! | CCGTTGTTTTCCACCGGAGC+TGG | - | chr6_3:63703154-63703173 | None:intergenic | 60.0% |
| ! | GGGTGTTGCAACGGTGGTTG+TGG | - | chr6_3:63703185-63703204 | None:intergenic | 60.0% |
| ! | AAGGGTGGGTGTTGCAACGG+TGG | - | chr6_3:63703191-63703210 | None:intergenic | 60.0% |
| ACAGACACAGACGGCGGTGA+AGG | - | chr6_3:63703642-63703661 | None:intergenic | 60.0% | |
| GCCGGCATCAAATCAAGCGG+CGG | - | chr6_3:63704021-63704040 | None:intergenic | 60.0% | |
| ! | GCCGCTTGATTTGATGCCGG+CGG | + | chr6_3:63704020-63704039 | Msa0956420:CDS | 60.0% |
| ! | GCTTGATTTGATGCCGGCGG+TGG | + | chr6_3:63704023-63704042 | Msa0956420:CDS | 60.0% |
| TGATGCCGGCGGTGGCAAAA+CGG | + | chr6_3:63704031-63704050 | Msa0956420:CDS | 60.0% | |
| !! | CCGTTGTTTTCCACCGGAGC+TGG | - | chr6_3:63703154-63703173 | None:intergenic | 60.0% |
| ! | GGGTGTTGCAACGGTGGTTG+TGG | - | chr6_3:63703185-63703204 | None:intergenic | 60.0% |
| ! | AAGGGTGGGTGTTGCAACGG+TGG | - | chr6_3:63703191-63703210 | None:intergenic | 60.0% |
| ACAGACACAGACGGCGGTGA+AGG | - | chr6_3:63703642-63703661 | None:intergenic | 60.0% | |
| GCCGGCATCAAATCAAGCGG+CGG | - | chr6_3:63704021-63704040 | None:intergenic | 60.0% | |
| ! | GCCGCTTGATTTGATGCCGG+CGG | + | chr6_3:63704020-63704039 | Msa0956420:CDS | 60.0% |
| ! | GCTTGATTTGATGCCGGCGG+TGG | + | chr6_3:63704023-63704042 | Msa0956420:CDS | 60.0% |
| TGATGCCGGCGGTGGCAAAA+CGG | + | chr6_3:63704031-63704050 | Msa0956420:CDS | 60.0% | |
| TTCGCCAGCACGAGCACCAG+CGG | + | chr6_3:63703810-63703829 | Msa0956420:CDS | 65.0% | |
| ! | GAGCTCCGTTTTGCCACCGC+CGG | - | chr6_3:63704039-63704058 | None:intergenic | 65.0% |
| GCGGTGGCAAAACGGAGCTC+CGG | + | chr6_3:63704039-63704058 | Msa0956420:CDS | 65.0% | |
| TTCGCCAGCACGAGCACCAG+CGG | + | chr6_3:63703810-63703829 | Msa0956420:CDS | 65.0% | |
| ! | GAGCTCCGTTTTGCCACCGC+CGG | - | chr6_3:63704039-63704058 | None:intergenic | 65.0% |
| GCGGTGGCAAAACGGAGCTC+CGG | + | chr6_3:63704039-63704058 | Msa0956420:CDS | 65.0% | |
| GGCTCCTTCACCAGCTCCGG+TGG | + | chr6_3:63703141-63703160 | Msa0956420:CDS | 70.0% | |
| AGCTCCGCTGGTGCTCGTGC+TGG | - | chr6_3:63703817-63703836 | None:intergenic | 70.0% | |
| GGCAAAACGGAGCTCCGGCG+AGG | + | chr6_3:63704044-63704063 | Msa0956420:CDS | 70.0% | |
| GGCTCCTTCACCAGCTCCGG+TGG | + | chr6_3:63703141-63703160 | Msa0956420:CDS | 70.0% | |
| AGCTCCGCTGGTGCTCGTGC+TGG | - | chr6_3:63703817-63703836 | None:intergenic | 70.0% | |
| GGCAAAACGGAGCTCCGGCG+AGG | + | chr6_3:63704044-63704063 | Msa0956420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 63703139 | 63704284 | 63703139 | ID=Msa0956420;Name=Msa0956420 |
| chr6_3 | mRNA | 63703139 | 63704284 | 63703139 | ID=Msa0956420-mRNA-1;Parent=Msa0956420;Name=Msa0956420-mRNA-1;_AED=0.25;_eAED=0.30;_QI=0|0|0|1|1|1|3|0|308 |
| chr6_3 | exon | 63703139 | 63703330 | 63703139 | ID=Msa0956420-mRNA-1:exon:12159;Parent=Msa0956420-mRNA-1 |
| chr6_3 | exon | 63703528 | 63703770 | 63703528 | ID=Msa0956420-mRNA-1:exon:12160;Parent=Msa0956420-mRNA-1 |
| chr6_3 | exon | 63703793 | 63704284 | 63703793 | ID=Msa0956420-mRNA-1:exon:12161;Parent=Msa0956420-mRNA-1 |
| chr6_3 | CDS | 63703139 | 63703330 | 63703139 | ID=Msa0956420-mRNA-1:cds;Parent=Msa0956420-mRNA-1 |
| chr6_3 | CDS | 63703528 | 63703770 | 63703528 | ID=Msa0956420-mRNA-1:cds;Parent=Msa0956420-mRNA-1 |
| chr6_3 | CDS | 63703793 | 63704284 | 63703793 | ID=Msa0956420-mRNA-1:cds;Parent=Msa0956420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
