AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0957380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0957380 MtrunA17_Chr6g0474371 97.701 174 3 1 1 173 1 174 3.95e-122 343
Msa0957380 MtrunA17_Chr1g0204111 64.171 187 67 0 1 187 17 203 1.06e-80 240
Msa0957380 MtrunA17_Chr8g0351051 58.101 179 74 1 1 179 1 178 4.95e-62 192
Msa0957380 MtrunA17_Chr6g0455511 52.542 177 71 3 1 171 1 170 3.38e-53 170
Msa0957380 MtrunA17_Chr3g0122251 53.448 174 72 3 1 168 1 171 6.51e-53 169
Msa0957380 MtrunA17_Chr7g0220111 52.326 172 79 2 1 171 1 170 2.10e-52 168
Msa0957380 MtrunA17_Chr4g0061691 55.621 169 73 2 1 168 1 168 9.99e-52 166
Msa0957380 MtrunA17_Chr5g0420091 50.000 182 78 3 1 170 1 181 1.29e-51 165
Msa0957380 MtrunA17_Chr8g0366231 52.326 172 74 4 1 168 1 168 3.15e-45 149
Msa0957380 MtrunA17_Chr4g0061671 46.821 173 88 3 1 172 1 170 4.94e-45 147
Msa0957380 MtrunA17_Chr5g0420081 49.180 183 88 4 1 181 1 180 8.46e-44 145
Msa0957380 MtrunA17_Chr7g0220121 48.235 170 82 3 1 168 1 166 2.95e-42 142
Msa0957380 MtrunA17_Chr3g0077501 43.103 174 98 1 1 174 1 173 8.08e-39 132
Msa0957380 MtrunA17_Chr3g0097101 40.314 191 107 2 1 185 16 205 2.91e-38 132
Msa0957380 MtrunA17_Chr8g0351041 44.172 163 87 3 1 161 1 161 1.06e-37 128
Msa0957380 MtrunA17_Chr8g0351031 43.353 173 94 3 1 171 1 171 2.40e-37 129
Msa0957380 MtrunA17_Chr4g0057151 45.238 168 91 1 1 168 1 167 9.53e-37 127
Msa0957380 MtrunA17_Chr7g0246431 44.970 169 90 2 1 168 1 167 1.07e-36 127
Msa0957380 MtrunA17_Chr2g0284911 39.326 178 107 1 1 178 16 192 3.24e-36 127
Msa0957380 MtrunA17_Chr2g0279821 44.586 157 85 1 1 157 1 155 7.48e-36 125
Msa0957380 MtrunA17_Chr5g0411691 43.976 166 88 3 1 164 1 163 1.14e-35 125
Msa0957380 MtrunA17_Chr8g0380021 39.181 171 103 1 1 171 17 186 1.60e-35 124
Msa0957380 MtrunA17_Chr4g0049541 45.000 140 75 1 1 140 1 138 1.24e-32 116
Msa0957380 MtrunA17_Chr3g0125241 41.781 146 77 2 1 144 26 165 1.06e-31 114
Msa0957380 MtrunA17_Chr4g0018421 36.634 202 112 7 1 191 1 197 8.51e-30 108
Msa0957380 MtrunA17_Chr1g0164791 37.209 172 104 2 1 168 1 172 2.08e-29 108
Msa0957380 MtrunA17_Chr4g0020221 42.138 159 85 2 1 155 1 156 2.48e-29 108
Msa0957380 MtrunA17_Chr5g0412461 39.884 173 93 2 1 168 1 167 3.63e-29 107
Msa0957380 MtrunA17_Chr7g0246381 81.667 60 11 0 1 60 1 60 4.27e-29 103
Msa0957380 MtrunA17_Chr5g0404951 38.150 173 97 3 1 168 1 168 4.67e-29 107
Msa0957380 MtrunA17_Chr2g0308251 73.913 69 18 0 1 69 1 69 5.24e-29 103
Msa0957380 MtrunA17_Chr5g0412271 40.462 173 92 3 1 168 1 167 5.69e-29 107
Msa0957380 MtrunA17_Chr1g0159661 41.096 146 78 2 1 144 1 140 7.26e-29 105
Msa0957380 MtrunA17_Chr3g0142191 37.778 180 100 3 1 174 1 174 1.04e-28 106
Msa0957380 MtrunA17_Chr5g0427401 39.412 170 96 2 1 168 1 165 1.22e-28 106
Msa0957380 MtrunA17_Chr8g0377561 81.034 58 11 0 1 58 1 58 2.75e-27 99.4
Msa0957380 MtrunA17_Chr4g0049901 36.994 173 100 3 1 168 27 195 3.18e-26 100
Msa0957380 MtrunA17_Chr1g0173161 70.000 60 18 0 1 60 1 60 2.38e-23 89.0
Msa0957380 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 4.48e-22 84.7
Msa0957380 MtrunA17_Chr2g0292791 52.941 68 32 0 2 69 9 76 5.86e-21 86.7
Msa0957380 MtrunA17_Chr1g0208561 51.429 70 32 1 2 69 7 76 1.30e-20 85.5
Msa0957380 MtrunA17_Chr3g0089141 51.429 70 32 1 2 69 7 76 1.55e-20 85.5
Msa0957380 MtrunA17_Chr2g0325971 50.000 70 33 1 2 69 7 76 8.18e-20 83.6
Msa0957380 MtrunA17_Chr3g0099421 52.941 68 32 0 2 69 34 101 1.16e-19 83.6
Msa0957380 MtrunA17_Chr3g0099411 50.000 68 34 0 2 69 9 76 1.18e-19 82.8
Msa0957380 MtrunA17_Chr8g0355091 51.471 68 33 0 2 69 9 76 1.20e-19 83.2
Msa0957380 MtrunA17_Chr1g0206701 50.000 68 34 0 2 69 9 76 1.44e-19 83.2
Msa0957380 MtrunA17_Chr1g0206721 50.000 68 34 0 2 69 9 76 1.65e-19 82.8
Msa0957380 MtrunA17_Chr3g0119901 46.341 82 42 1 1 82 8 87 1.68e-19 82.0
Msa0957380 MtrunA17_Chr3g0134451 39.844 128 67 4 1 127 1 119 2.97e-19 83.6
Msa0957380 MtrunA17_Chr1g0187361 51.471 68 33 0 2 69 9 76 3.22e-19 82.0
Msa0957380 MtrunA17_Chr1g0188671 52.941 68 32 0 2 69 47 114 3.22e-19 82.8
Msa0957380 MtrunA17_Chr1g0149391 51.471 68 33 0 2 69 9 76 5.41e-19 81.6
Msa0957380 MtrunA17_Chr5g0419601 52.174 69 33 0 1 69 8 76 5.94e-19 81.3
Msa0957380 MtrunA17_Chr1g0208581 48.571 70 34 1 2 69 7 76 1.27e-18 80.5
Msa0957380 MtrunA17_Chr2g0317451 51.471 68 33 0 2 69 9 76 1.39e-18 80.5
Msa0957380 MtrunA17_Chr2g0317481 51.471 68 33 0 2 69 9 76 1.53e-18 80.5
Msa0957380 MtrunA17_Chr3g0085241 46.154 78 40 1 1 78 40 115 2.26e-18 80.1
Msa0957380 MtrunA17_Chr8g0377551 41.905 105 61 0 64 168 3 107 3.60e-18 78.2
Msa0957380 MtrunA17_Chr4g0044071 55.932 59 26 0 1 59 1 59 5.80e-18 75.9
Msa0957380 MtrunA17_Chr8g0357771 32.609 138 84 3 1 133 1 134 5.90e-18 77.4
Msa0957380 MtrunA17_Chr1g0206991 47.059 68 36 0 2 69 9 76 7.59e-18 77.4
Msa0957380 MtrunA17_Chr1g0175611 37.755 98 58 1 1 98 1 95 1.02e-17 76.6
Msa0957380 MtrunA17_Chr4g0074101 37.736 106 63 1 1 106 1 103 1.45e-17 77.0
Msa0957380 MtrunA17_Chr8g0379021 38.000 100 59 1 2 98 12 111 1.89e-17 76.3
Msa0957380 MtrunA17_Chr4g0018951 61.111 54 21 0 16 69 26 79 1.97e-17 75.9
Msa0957380 MtrunA17_Chr2g0333981 46.377 69 37 0 1 69 11 79 3.34e-17 75.5
Msa0957380 MtrunA17_Chr5g0422421 50.000 68 34 0 2 69 9 76 4.36e-17 76.3
Msa0957380 MtrunA17_Chr5g0422941 48.529 68 35 0 2 69 9 76 5.42e-17 76.3
Msa0957380 MtrunA17_Chr5g0425191 57.627 59 25 0 1 59 1 59 8.73e-17 72.4
Msa0957380 MtrunA17_Chr1g0180591 33.333 135 81 3 1 130 1 131 9.42e-17 74.3
Msa0957380 MtrunA17_Chr1g0175601 34.783 138 81 3 1 133 1 134 9.52e-17 74.3
Msa0957380 MtrunA17_Chr1g0166611 65.385 52 17 1 16 66 20 71 1.16e-16 72.8
Msa0957380 MtrunA17_Chr1g0206691 52.542 59 28 0 11 69 1 59 1.21e-16 74.7
Msa0957380 MtrunA17_Chr2g0300421 47.143 70 35 1 2 69 7 76 2.25e-16 73.2
Msa0957380 MtrunA17_Chr3g0089151 45.588 68 37 0 2 69 9 76 2.31e-16 72.0
Msa0957380 MtrunA17_Chr1g0169761 37.374 99 59 1 1 99 1 96 3.49e-16 72.8
Msa0957380 MtrunA17_Chr8g0376821 42.254 71 41 0 1 71 1 71 6.24e-16 72.0
Msa0957380 MtrunA17_Chr2g0300441 45.714 70 36 1 2 69 7 76 9.11e-16 72.8
Msa0957380 MtrunA17_Chr4g0052061 44.928 69 38 0 1 69 1 69 1.23e-15 70.9
Msa0957380 MtrunA17_Chr4g0052081 43.478 69 39 0 1 69 1 69 1.46e-15 71.2
Msa0957380 MtrunA17_Chr1g0187351 49.153 59 30 0 11 69 1 59 4.22e-15 67.0
Msa0957380 MtrunA17_Chr3g0111841 50.000 60 30 0 7 66 1 60 9.45e-15 66.2
Msa0957380 MtrunA17_Chr4g0060841 43.836 73 39 1 1 71 1 73 7.75e-14 68.6
Msa0957380 MtrunA17_Chr4g0071601 46.377 69 37 0 1 69 11 79 9.69e-14 66.6
Msa0957380 MtrunA17_Chr2g0308271 39.496 119 68 3 54 171 27 142 5.89e-13 64.7
Msa0957380 MtrunA17_Chr8g0356071 36.620 71 45 0 1 71 1 71 1.61e-12 62.8
Msa0957380 MtrunA17_Chr7g0238991 50.000 52 26 0 18 69 37 88 1.99e-12 63.9
Msa0957380 MtrunA17_Chr3g0111931 55.357 56 25 0 14 69 2 57 3.13e-12 60.5
Msa0957380 MtrunA17_Chr5g0417661 47.170 53 28 0 1 53 56 108 2.08e-11 58.9
Msa0957380 MtrunA17_Chr3g0111831 46.032 63 34 0 7 69 9 71 5.02e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0957380 AT2G45650.1 55.556 171 74 2 1 171 1 169 4.04e-55 175
Msa0957380 AT5G15800.1 52.571 175 81 2 1 174 1 174 1.02e-52 169
Msa0957380 AT3G02310.2 52.326 172 80 2 1 171 1 171 1.41e-52 167
Msa0957380 AT1G24260.1 53.757 173 72 3 1 168 1 170 2.04e-52 168
Msa0957380 AT5G15800.2 52.571 175 81 2 1 174 1 174 2.34e-52 169
Msa0957380 AT3G02310.1 52.000 175 82 2 1 174 1 174 4.13e-52 167
Msa0957380 AT1G24260.2 53.179 173 74 3 1 168 1 171 3.30e-51 165
Msa0957380 AT3G61120.1 52.976 168 76 2 1 168 1 165 7.40e-51 164
Msa0957380 AT1G24260.3 50.286 175 80 3 1 170 1 173 1.54e-48 158
Msa0957380 AT2G03710.3 48.235 170 84 2 1 168 1 168 5.82e-48 155
Msa0957380 AT5G60910.1 51.176 170 79 3 1 168 1 168 7.35e-48 156
Msa0957380 AT2G03710.2 46.703 182 93 2 1 180 1 180 9.47e-48 157
Msa0957380 AT1G26310.1 50.270 185 89 3 1 183 1 184 9.57e-48 157
Msa0957380 AT2G03710.1 46.703 182 93 2 1 180 1 180 1.02e-47 157
Msa0957380 AT1G69120.2 51.744 172 77 3 1 169 1 169 6.22e-47 154
Msa0957380 AT1G69120.1 52.047 171 76 3 1 168 1 168 2.49e-46 153
Msa0957380 AT4G22950.2 45.349 172 92 1 1 172 1 170 4.49e-38 129
Msa0957380 AT4G22950.3 45.087 173 93 1 1 173 1 171 1.42e-37 129
Msa0957380 AT4G22950.1 45.087 173 93 1 1 173 1 171 1.42e-37 129
Msa0957380 AT4G11880.2 49.686 159 77 3 1 158 1 157 1.97e-37 128
Msa0957380 AT4G11880.3 49.686 159 77 3 1 158 1 157 1.97e-37 128
Msa0957380 AT2G42830.2 41.212 165 90 2 1 162 16 176 3.47e-37 129
Msa0957380 AT3G58780.1 40.323 186 103 3 1 183 16 196 6.53e-37 129
Msa0957380 AT3G58780.5 40.323 186 103 3 1 183 22 202 9.00e-37 128
Msa0957380 AT4G18960.1 40.113 177 105 1 2 178 18 193 1.07e-36 128
Msa0957380 AT2G42830.1 39.444 180 102 2 1 177 16 191 1.18e-36 128
Msa0957380 AT3G30260.1 50.000 150 65 5 1 144 1 146 1.42e-36 128
Msa0957380 AT4G09960.2 42.424 165 88 3 1 162 1 161 2.63e-36 126
Msa0957380 AT4G09960.1 39.548 177 100 3 1 174 1 173 4.90e-36 126
Msa0957380 AT4G09960.6 39.548 177 100 3 1 174 2 174 5.43e-36 125
Msa0957380 AT4G09960.5 39.548 177 100 3 1 174 11 183 6.39e-36 126
Msa0957380 AT3G57230.2 45.395 152 70 3 1 148 1 143 7.89e-36 123
Msa0957380 AT4G09960.3 39.548 177 100 3 1 174 27 199 1.41e-35 125
Msa0957380 AT3G58780.4 43.046 151 79 2 1 148 16 162 1.78e-35 126
Msa0957380 AT5G13790.2 45.665 173 79 3 1 168 1 163 9.46e-35 124
Msa0957380 AT4G09960.4 42.581 155 82 3 1 152 96 246 1.07e-34 125
Msa0957380 AT5G62165.17 42.767 159 88 2 1 158 1 157 1.15e-34 120
Msa0957380 AT5G62165.12 42.767 159 88 2 1 158 1 157 1.15e-34 120
Msa0957380 AT5G62165.11 42.767 159 88 2 1 158 1 157 1.15e-34 120
Msa0957380 AT3G57230.1 44.654 159 75 3 1 155 1 150 1.44e-34 122
Msa0957380 AT3G57230.4 44.654 159 75 3 1 155 1 150 1.44e-34 122
Msa0957380 AT4G11880.4 50.694 144 68 3 1 143 1 142 1.77e-34 122
Msa0957380 AT4G11880.1 50.694 144 68 3 1 143 1 142 1.77e-34 122
Msa0957380 AT5G62165.3 41.379 174 99 2 1 173 1 172 1.88e-34 121
Msa0957380 AT5G62165.1 41.379 174 99 2 1 173 1 172 1.88e-34 121
Msa0957380 AT5G62165.2 41.379 174 99 2 1 173 1 172 1.88e-34 121
Msa0957380 AT5G62165.10 43.038 158 87 2 1 157 1 156 4.38e-34 120
Msa0957380 AT5G62165.4 43.038 158 87 2 1 157 1 156 4.38e-34 120
Msa0957380 AT2G45660.2 42.138 159 89 2 1 158 1 157 4.61e-34 119
Msa0957380 AT4G37940.4 36.735 196 115 2 1 189 1 194 8.26e-34 120
Msa0957380 AT2G45660.1 39.130 184 109 2 1 183 1 182 1.00e-33 119
Msa0957380 AT4G37940.1 40.764 157 91 1 1 157 1 155 1.43e-33 119
Msa0957380 AT5G62165.6 44.138 145 78 2 1 144 1 143 1.88e-33 117
Msa0957380 AT5G62165.9 44.138 145 78 2 1 144 1 143 1.88e-33 117
Msa0957380 AT5G62165.7 44.138 145 78 2 1 144 1 143 1.88e-33 117
Msa0957380 AT5G62165.8 44.138 145 78 2 1 144 1 143 1.88e-33 117
Msa0957380 AT5G62165.13 44.138 145 78 2 1 144 1 143 1.88e-33 117
Msa0957380 AT3G58780.2 39.247 186 98 4 1 183 16 189 9.70e-33 117
Msa0957380 AT4G37940.3 42.857 140 78 1 1 140 1 138 9.81e-33 115
Msa0957380 AT5G13790.1 44.706 170 82 2 1 168 1 160 1.04e-32 118
Msa0957380 AT2G22630.1 39.881 168 86 3 1 160 1 161 5.34e-32 115
Msa0957380 AT2G22630.2 39.881 168 86 3 1 160 1 161 5.34e-32 115
Msa0957380 AT3G58780.3 36.493 211 101 4 1 183 16 221 1.79e-31 115
Msa0957380 AT5G20240.1 38.372 172 91 3 1 163 1 166 2.08e-31 113
Msa0957380 AT2G14210.1 44.937 158 79 4 1 156 1 152 1.80e-30 112
Msa0957380 AT5G20240.2 40.411 146 79 2 1 144 1 140 2.16e-30 109
Msa0957380 AT2G14210.2 44.937 158 79 4 1 156 1 152 2.40e-30 111
Msa0957380 AT2G22540.3 39.306 173 94 2 1 168 1 167 1.18e-29 110
Msa0957380 AT2G22540.1 39.306 173 94 2 1 168 1 167 1.18e-29 110
Msa0957380 AT5G51860.2 38.037 163 94 1 1 156 1 163 3.05e-29 107
Msa0957380 AT5G51860.1 38.037 163 94 1 1 156 1 163 3.69e-29 107
Msa0957380 AT5G51870.1 40.449 178 88 4 1 165 1 173 2.04e-28 105
Msa0957380 AT5G62165.14 63.380 71 26 0 1 71 1 71 5.73e-28 101
Msa0957380 AT3G57390.3 41.975 162 86 3 1 155 1 161 9.80e-28 104
Msa0957380 AT5G65080.3 38.547 179 100 3 1 178 8 177 1.16e-27 103
Msa0957380 AT5G51870.2 40.132 152 81 2 1 147 1 147 1.85e-27 102
Msa0957380 AT3G57390.1 41.975 162 86 3 1 155 1 161 1.96e-27 104
Msa0957380 AT5G51870.4 39.665 179 90 4 1 166 1 174 2.90e-27 103
Msa0957380 AT5G51870.3 39.665 179 90 4 1 166 11 184 3.72e-27 103
Msa0957380 AT2G22540.2 39.306 173 89 3 1 168 1 162 5.72e-27 102
Msa0957380 AT5G51870.5 40.132 152 81 2 1 147 24 170 5.77e-27 101
Msa0957380 AT4G24540.1 38.596 171 98 2 1 168 1 167 6.95e-27 102
Msa0957380 AT5G10140.4 38.182 165 89 4 1 161 1 156 7.22e-27 101
Msa0957380 AT5G23260.2 35.632 174 98 3 1 168 1 166 1.62e-26 102
Msa0957380 AT5G23260.4 35.632 174 98 3 1 168 17 182 2.47e-26 102
Msa0957380 AT1G71692.1 34.500 200 111 4 1 187 1 193 2.27e-25 98.2
Msa0957380 AT5G23260.3 36.601 153 83 3 1 147 1 145 5.27e-25 97.8
Msa0957380 AT5G23260.1 35.632 174 93 4 1 168 17 177 1.07e-24 97.4
Msa0957380 AT5G10140.2 37.908 153 85 3 1 152 1 144 2.79e-24 94.0
Msa0957380 AT5G65050.2 37.278 169 96 4 1 168 1 160 3.23e-24 94.4
Msa0957380 AT5G10140.1 37.908 153 85 3 1 152 1 144 3.60e-24 94.7
Msa0957380 AT3G54340.1 35.294 170 102 2 1 168 1 164 5.24e-24 95.1
Msa0957380 AT5G10140.3 37.908 153 85 3 1 152 1 144 8.08e-24 93.2
Msa0957380 AT5G65050.3 37.278 169 96 4 1 168 1 160 8.25e-24 93.6
Msa0957380 AT5G65050.1 37.107 159 90 4 1 158 1 150 1.46e-22 90.1
Msa0957380 AT1G77080.11 39.053 169 93 3 1 168 1 160 9.90e-22 87.8
Msa0957380 AT5G65050.5 36.095 169 87 4 1 168 1 149 1.52e-21 87.4
Msa0957380 AT1G77080.5 39.053 169 93 3 1 168 1 160 2.11e-21 86.7
Msa0957380 AT1G77080.4 39.053 169 93 3 1 168 1 160 3.20e-21 87.0
Msa0957380 AT5G65070.1 35.632 174 102 3 1 173 1 165 3.42e-21 87.0
Msa0957380 AT5G65080.2 39.189 148 81 2 1 148 8 146 3.92e-21 86.7
Msa0957380 AT5G65070.4 37.748 151 84 3 1 150 1 142 6.03e-21 84.7
Msa0957380 AT5G65060.3 33.673 196 116 7 1 193 1 185 9.99e-21 85.5
Msa0957380 AT5G65060.1 36.095 169 98 4 1 168 1 160 2.21e-20 84.7
Msa0957380 AT1G65360.1 39.796 98 49 2 1 98 6 93 4.03e-20 84.7
Msa0957380 AT1G01530.1 50.746 67 33 0 1 67 6 72 2.31e-19 83.2
Msa0957380 AT5G65070.2 55.714 70 30 1 1 69 1 70 2.53e-19 82.8
Msa0957380 AT5G65070.5 55.714 70 30 1 1 69 1 70 4.21e-19 81.6
Msa0957380 AT5G65060.2 36.628 172 82 6 1 168 1 149 8.48e-19 80.1
Msa0957380 AT1G31140.2 34.507 142 91 1 1 140 1 142 1.19e-18 80.5
Msa0957380 AT2G34440.1 41.975 81 46 1 1 81 1 80 1.84e-18 79.0
Msa0957380 AT1G77080.8 35.789 190 97 5 1 168 1 187 2.44e-18 79.7
Msa0957380 AT1G77980.1 52.857 70 32 1 1 69 1 70 3.57e-18 81.3
Msa0957380 AT5G65070.3 34.314 204 96 8 1 173 1 197 3.85e-18 79.3
Msa0957380 AT5G60440.1 48.529 68 35 0 2 69 7 74 5.20e-18 80.1
Msa0957380 AT1G22130.1 52.857 70 32 1 1 69 1 70 6.43e-18 80.5
Msa0957380 AT4G36590.1 41.111 90 48 1 2 91 7 91 9.15e-18 79.0
Msa0957380 AT1G31140.1 36.986 146 80 4 1 140 1 140 4.48e-17 76.3
Msa0957380 AT1G77080.2 36.905 168 94 3 1 168 1 156 5.85e-17 75.5
Msa0957380 AT1G77080.12 38.608 158 85 4 1 158 1 146 6.43e-17 74.3
Msa0957380 AT2G24840.1 44.928 69 38 0 1 69 62 130 7.36e-17 76.6
Msa0957380 AT1G77950.3 50.000 70 34 1 1 69 1 70 2.62e-16 75.1
Msa0957380 AT1G77950.2 50.000 70 34 1 1 69 1 70 2.62e-16 75.1
Msa0957380 AT1G77950.1 50.000 70 34 1 1 69 1 70 2.62e-16 75.1
Msa0957380 AT1G77950.4 50.000 70 34 1 1 69 1 70 2.62e-16 75.1
Msa0957380 AT3G66656.1 42.857 70 40 0 1 70 1 70 1.46e-15 71.6
Msa0957380 AT4G37435.1 32.759 174 100 5 1 169 1 162 7.22e-15 69.7
Msa0957380 AT1G18750.4 41.096 73 41 1 1 71 1 73 6.32e-13 66.6
Msa0957380 AT3G04100.1 28.148 135 74 3 2 136 14 125 6.37e-13 65.1
Msa0957380 AT1G18750.1 41.096 73 41 1 1 71 1 73 8.05e-13 66.2
Msa0957380 AT1G18750.3 41.096 73 41 1 1 71 1 73 9.99e-13 66.2
Msa0957380 AT1G72350.1 47.059 68 34 1 2 69 43 108 1.21e-12 64.7
Msa0957380 AT1G47760.1 33.065 124 69 3 1 124 1 110 1.70e-12 63.5
Msa0957380 AT2G03060.3 49.057 53 27 0 1 53 1 53 1.01e-11 63.2
Msa0957380 AT2G03060.7 49.057 53 27 0 1 53 1 53 1.01e-11 63.2
Msa0957380 AT2G03060.1 49.057 53 27 0 1 53 1 53 1.01e-11 63.2
Msa0957380 AT2G03060.2 49.057 53 27 0 1 53 1 53 1.25e-11 62.8
Msa0957380 AT1G29962.1 39.706 68 41 0 2 69 8 75 2.99e-11 60.1
Msa0957380 AT5G60910.2 34.259 108 68 2 62 168 1 106 7.59e-11 58.9

Find 37 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGACTATTTAAAATTAA+AGG 0.209855 6_3:-68167565 Msa0957380:CDS
TTCTATTTGAAATACATAAA+TGG 0.239661 6_3:+68164423 None:intergenic
TGACAACAACAAAATATTAA+TGG 0.251022 6_3:-68164463 Msa0957380:three_prime_UTR
CAATTGCAGGATATACATTA+AGG 0.326716 6_3:-68165802 Msa0957380:intron
AACAATTCATATTCAATTGC+AGG 0.336416 6_3:-68165815 Msa0957380:CDS
GAATAGAGAATAAGATCAAT+AGG 0.384169 6_3:-68169246 Msa0957380:CDS
GTTTGGTGTATGTTCTATAT+AGG 0.399309 6_3:-68164396 Msa0957380:three_prime_UTR
CCACAAGCTGGCAATTCATT+AGG 0.412131 6_3:-68167734 Msa0957380:CDS
ATTAGGACATAATGAATCTC+AGG 0.427391 6_3:-68167717 Msa0957380:intron
GGGAAGAGGAAGAGTAGTGT+TGG 0.444821 6_3:-68169272 Msa0957380:CDS
GAGATAAATGAGGTGTTGAA+TGG 0.461475 6_3:-68164294 Msa0957380:three_prime_UTR
ACAAAATCATTGAAAGGTAT+CGG 0.498771 6_3:-68167775 Msa0957380:CDS
TTCCTTGCAGAATTTATACC+AGG 0.516754 6_3:-68167583 Msa0957380:intron
ACATTCTCAAAGAGAAGAAG+TGG 0.533258 6_3:-68169217 Msa0957380:CDS
TAACAAAACATTGGATCCCA+AGG 0.538783 6_3:-68166037 Msa0957380:intron
ATAATTAGTAACATAAGAAG+AGG 0.545233 6_3:-68169317 None:intergenic
TGATCAGTTACCTCTGCTTG+CGG 0.557111 6_3:+68167523 None:intergenic
TTTGTCAACAACGAGGTTTG+AGG 0.557701 6_3:+68165837 None:intergenic
CCTAATGAATTGCCAGCTTG+TGG 0.558570 6_3:+68167734 None:intergenic
GGAGGAGGTTAACAAAACAT+TGG 0.566471 6_3:-68166046 Msa0957380:CDS
CGTTACAACAAGCCACAAGC+TGG 0.568796 6_3:-68167746 Msa0957380:CDS
TTGTCAGGTGCATCACTTGG+AGG 0.569728 6_3:-68166064 Msa0957380:intron
GAAGCTCATGGCACGAGCTG+AGG 0.572813 6_3:-68166195 Msa0957380:CDS
AACAACAAAATATTAATGGA+TGG 0.573678 6_3:-68164459 Msa0957380:three_prime_UTR
TCAGGTGCATCACTTGGAGG+AGG 0.575411 6_3:-68166061 Msa0957380:intron
GATATAATAAGTAGATGATG+AGG 0.578923 6_3:-68164329 Msa0957380:three_prime_UTR
ACGTTGTCAGGTGCATCACT+TGG 0.581480 6_3:-68166067 Msa0957380:intron
GTTGCTGACGAGCTTGTGTG+AGG 0.585890 6_3:+68166587 None:intergenic
TAATTAGTAACATAAGAAGA+GGG 0.587564 6_3:-68169316 None:intergenic
GAGATATTTAGAGATAAATG+AGG 0.599717 6_3:-68164304 Msa0957380:three_prime_UTR
TTGCTGACGAGCTTGTGTGA+GGG 0.602754 6_3:+68166588 None:intergenic
TTTGCAGATGAAGAAGCTCA+TGG 0.604313 6_3:-68166207 Msa0957380:intron
GTATAAACAAAATCATTGAA+AGG 0.606354 6_3:-68167781 Msa0957380:CDS
ACATAGAACACAAAGCTCAA+AGG 0.615645 6_3:+68169180 None:intergenic
AGTCTCTCGACCGCAAGCAG+AGG 0.633842 6_3:-68167533 Msa0957380:intron
TGTTGAATGGATGTTGAAAG+AGG 0.634101 6_3:-68164281 Msa0957380:three_prime_UTR
GAAAGAATTGCAAAGACTCG+AGG 0.646936 6_3:-68166626 Msa0957380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAAATAATAATT+AGG - chr6_3:68166143-68166162 Msa0957380:intron 0.0%
!!! TCCTATATTATTATTATTTT+TGG - chr6_3:68165865-68165884 Msa0957380:intron 10.0%
!! ACCAAAAATAATAATAATAT+AGG + chr6_3:68165869-68165888 None:intergenic 10.0%
!!! TCTTTTAGAAAATTAATAAT+AGG + chr6_3:68166238-68166257 None:intergenic 10.0%
!! AAAATGAGAAATTAAAGAAA+AGG + chr6_3:68164452-68164471 None:intergenic 15.0%
!! ATAAGAAATTTAGATTTAGA+GGG + chr6_3:68164565-68164584 None:intergenic 15.0%
!! TATAAGAAATTTAGATTTAG+AGG + chr6_3:68164566-68164585 None:intergenic 15.0%
!! TCTAAATCTAAATTTCTTAT+AGG - chr6_3:68164565-68164584 Msa0957380:intron 15.0%
!!! CTTAAATTTTTTTTTAGAAG+AGG + chr6_3:68164658-68164677 None:intergenic 15.0%
!! AAAAAAAATTTAAGCCATTA+TGG - chr6_3:68164664-68164683 Msa0957380:intron 15.0%
!!! AATGATATGAATTTAGATTT+TGG + chr6_3:68165547-68165566 None:intergenic 15.0%
!! AAATTAATAATTGCGAAAAA+TGG - chr6_3:68166108-68166127 Msa0957380:intron 15.0%
!! TTTCATTTCAATTGAAAATA+AGG - chr6_3:68166580-68166599 Msa0957380:intron 15.0%
!! TTCATTTCAATTGAAAATAA+GGG - chr6_3:68166581-68166600 Msa0957380:intron 15.0%
!!! TGTAAAATGATTTTTTTTTG+TGG + chr6_3:68166716-68166735 None:intergenic 15.0%
!! TAATGACAAAATTATTTCAA+AGG - chr6_3:68166790-68166809 Msa0957380:intron 15.0%
!! AATGACAAAATTATTTCAAA+GGG - chr6_3:68166791-68166810 Msa0957380:intron 15.0%
!!! TTTTGAAAAAGCAAATAAAT+AGG - chr6_3:68167193-68167212 Msa0957380:intron 15.0%
!!! AGTATGCAATTATTTTTAAA+AGG - chr6_3:68167366-68167385 Msa0957380:intron 15.0%
!!! ACTCAATTGAATTTTTTTTT+TGG - chr6_3:68167594-68167613 Msa0957380:intron 15.0%
!!! CTCAATTGAATTTTTTTTTT+GGG - chr6_3:68167595-68167614 Msa0957380:intron 15.0%
!!! AAAATTTGATGTTTTTGTTT+CGG - chr6_3:68168091-68168110 Msa0957380:intron 15.0%
!! TATTATTATTACTTATGCTT+TGG - chr6_3:68168900-68168919 Msa0957380:intron 15.0%
!!! TTCTATTTGAAATACATAAA+TGG + chr6_3:68169105-68169124 None:intergenic 15.0%
!! ATTTCAAATAGAAAAATGTT+TGG - chr6_3:68169112-68169131 Msa0957380:intron 15.0%
!!! TAATATTTTTCTTTCTATCA+AGG + chr6_3:68169163-68169182 None:intergenic 15.0%
!!! TATTTTTCCTCTCAAAATAT+AGG - chr6_3:68164479-68164498 Msa0957380:three_prime_UTR 20.0%
!! ATAAAGTAGCACTAAATTAA+GGG + chr6_3:68164513-68164532 None:intergenic 20.0%
!!! TTTTAAAAGCAATGATTTGT+TGG - chr6_3:68164957-68164976 Msa0957380:intron 20.0%
!!! TTTAAAAGCAATGATTTGTT+GGG - chr6_3:68164958-68164977 Msa0957380:intron 20.0%
!!! ATTTTGGAGTTATTTACTTT+GGG + chr6_3:68165531-68165550 None:intergenic 20.0%
!! GTATAAACAAAATCATTGAA+AGG - chr6_3:68165744-68165763 Msa0957380:intron 20.0%
!! TTAATTTCATTCCAATTTCA+GGG + chr6_3:68166095-68166114 None:intergenic 20.0%
!! ATTAATTTCATTCCAATTTC+AGG + chr6_3:68166096-68166115 None:intergenic 20.0%
!! TAAGCATATGTTTAAAAAGT+AGG + chr6_3:68166267-68166286 None:intergenic 20.0%
!! ATATCATTTGAACATATTAG+AGG + chr6_3:68166480-68166499 None:intergenic 20.0%
!!! ATTATACTTTGATTTTTGGA+AGG + chr6_3:68166774-68166793 None:intergenic 20.0%
!!! TGTCATTATACTTTGATTTT+TGG + chr6_3:68166778-68166797 None:intergenic 20.0%
!!! TTATTTTTTGGTTGTTTTGA+AGG - chr6_3:68166841-68166860 Msa0957380:intron 20.0%
!! GATGTATAATATGTATATGA+TGG + chr6_3:68166988-68167007 None:intergenic 20.0%
!! TAGAATTGATAAAGTAGAAA+TGG - chr6_3:68167888-68167907 Msa0957380:intron 20.0%
!! CAATAAATTTAATGTTAGCT+AGG + chr6_3:68168060-68168079 None:intergenic 20.0%
!!! CGATTTCTAGAAAAAAAAAT+GGG + chr6_3:68168838-68168857 None:intergenic 20.0%
!!! TCGATTTCTAGAAAAAAAAA+TGG + chr6_3:68168839-68168858 None:intergenic 20.0%
!!! TTTTTTTTTCTAGAAATCGA+AGG - chr6_3:68168839-68168858 Msa0957380:intron 20.0%
!!! TTTTTTTTCTAGAAATCGAA+GGG - chr6_3:68168840-68168859 Msa0957380:intron 20.0%
!!! CTTATATATTTTGTTGCAAT+TGG - chr6_3:68168983-68169002 Msa0957380:intron 20.0%
!! TGACAACAACAAAATATTAA+TGG - chr6_3:68169062-68169081 Msa0957380:intron 20.0%
!! AACAACAAAATATTAATGGA+TGG - chr6_3:68169066-68169085 Msa0957380:intron 20.0%
! GAATAGAGAATAAGATCAAT+AGG - chr6_3:68164279-68164298 Msa0957380:three_prime_UTR 25.0%
!!! TATAGATCCTATATTTTGAG+AGG + chr6_3:68164489-68164508 None:intergenic 25.0%
! CATAAAGTAGCACTAAATTA+AGG + chr6_3:68164514-68164533 None:intergenic 25.0%
!!! CTTAATTTAGTGCTACTTTA+TGG - chr6_3:68164512-68164531 Msa0957380:three_prime_UTR 25.0%
!! TATAAGATCCCTTTTATAGT+TGG + chr6_3:68164605-68164624 None:intergenic 25.0%
! AACTATAAAAGGGATCTTAT+AGG - chr6_3:68164604-68164623 Msa0957380:intron 25.0%
! GCATAGATAATCAATCAATT+AGG - chr6_3:68164626-68164645 Msa0957380:intron 25.0%
!!! TATGTGTCATTTTACTGAAT+TGG + chr6_3:68164862-68164881 None:intergenic 25.0%
!!! TTAAAAGCAATGATTTGTTG+GGG - chr6_3:68164959-68164978 Msa0957380:intron 25.0%
! AACGTTAAATATGCAAGATA+GGG + chr6_3:68165463-68165482 None:intergenic 25.0%
! AAACGTTAAATATGCAAGAT+AGG + chr6_3:68165464-68165483 None:intergenic 25.0%
!!! GATTTTGGAGTTATTTACTT+TGG + chr6_3:68165532-68165551 None:intergenic 25.0%
!! ACAAAATCATTGAAAGGTAT+CGG - chr6_3:68165750-68165769 Msa0957380:intron 25.0%
! ATTAGTCAACAAGGAAAAAT+TGG + chr6_3:68165838-68165857 None:intergenic 25.0%
! GAACAATAAATTAGTCAACA+AGG + chr6_3:68165847-68165866 None:intergenic 25.0%
!!! CCTTTAATTTTAAATAGTCC+TGG + chr6_3:68165963-68165982 None:intergenic 25.0%
!! CCAGGACTATTTAAAATTAA+AGG - chr6_3:68165960-68165979 Msa0957380:intron 25.0%
! CGTTAATAAAACAATGATGA+TGG + chr6_3:68166290-68166309 None:intergenic 25.0%
! GACAATGCATAATATATGTA+AGG - chr6_3:68166668-68166687 Msa0957380:intron 25.0%
! TGCATAATATATGTAAGGTT+CGG - chr6_3:68166673-68166692 Msa0957380:intron 25.0%
!!! TGATTTTTTTTTGTGGTAGT+CGG + chr6_3:68166709-68166728 None:intergenic 25.0%
!!! ATTTTGAAAGGAAAAACCTT+GGG + chr6_3:68167507-68167526 None:intergenic 25.0%
!!! AATTTTGAAAGGAAAAACCT+TGG + chr6_3:68167508-68167527 None:intergenic 25.0%
!! CTAGTAACATGAATTTTGAA+AGG + chr6_3:68167519-68167538 None:intergenic 25.0%
!! TTCAAAAGTGCAAGTATATA+AGG + chr6_3:68167642-68167661 None:intergenic 25.0%
!!! ACTTTTGAAATTTACTTTGC+AGG - chr6_3:68167653-68167672 Msa0957380:intron 25.0%
! AACAATTCATATTCAATTGC+AGG - chr6_3:68167710-68167729 Msa0957380:intron 25.0%
! TTGAAAGACACATGATATAT+CGG - chr6_3:68167937-68167956 Msa0957380:intron 25.0%
! GGTTATGTTTATGCAAAAAT+CGG - chr6_3:68168162-68168181 Msa0957380:intron 25.0%
! GTTATGTTTATGCAAAAATC+GGG - chr6_3:68168163-68168182 Msa0957380:intron 25.0%
! AAAAAAATGAGCGAACTTAT+AGG - chr6_3:68168339-68168358 Msa0957380:intron 25.0%
! TTAACTGTTTAATAGTGAAG+TGG - chr6_3:68168546-68168565 Msa0957380:intron 25.0%
! TTGGTTACTATATTAGATCT+AGG - chr6_3:68168683-68168702 Msa0957380:intron 25.0%
! GATATAATAAGTAGATGATG+AGG - chr6_3:68169196-68169215 Msa0957380:CDS 25.0%
! GAGATATTTAGAGATAAATG+AGG - chr6_3:68169221-68169240 Msa0957380:CDS 25.0%
ATAGAGAGAGAGAAGAAAAA+TGG - chr6_3:68164232-68164251 Msa0957380:three_prime_UTR 30.0%
TAGAGAGAGAGAAGAAAAAT+GGG - chr6_3:68164233-68164252 Msa0957380:three_prime_UTR 30.0%
TATATTGAAAAAGCTTGCCA+CGG + chr6_3:68164403-68164422 None:intergenic 30.0%
TACTTTATGGTGCAAAATAC+AGG - chr6_3:68164525-68164544 Msa0957380:three_prime_UTR 30.0%
GATTTAGAGGGAGTAAAAAA+GGG + chr6_3:68164553-68164572 None:intergenic 30.0%
AGATTTAGAGGGAGTAAAAA+AGG + chr6_3:68164554-68164573 None:intergenic 30.0%
ACCATGAACCAACTATAAAA+GGG - chr6_3:68164594-68164613 Msa0957380:intron 30.0%
AGAAGAAAGAAGATCCATAA+TGG + chr6_3:68164681-68164700 None:intergenic 30.0%
AATTGCAGAATCATCTTACA+TGG - chr6_3:68164730-68164749 Msa0957380:intron 30.0%
! TAAAGTGTAGTCATGTTTTC+TGG - chr6_3:68164778-68164797 Msa0957380:intron 30.0%
TGACACATACATACAACAAA+TGG - chr6_3:68164873-68164892 Msa0957380:intron 30.0%
! ATATATCTGATGATGCCTTA+AGG + chr6_3:68165140-68165159 None:intergenic 30.0%
! TTAAGGCATCATCAGATATA+TGG - chr6_3:68165139-68165158 Msa0957380:intron 30.0%
! TAAGGCATCATCAGATATAT+GGG - chr6_3:68165140-68165159 Msa0957380:intron 30.0%
!!! ACCTGATGTTTTAAGGTTTT+GGG + chr6_3:68165431-68165450 None:intergenic 30.0%
!!! TACCTGATGTTTTAAGGTTT+TGG + chr6_3:68165432-68165451 None:intergenic 30.0%
ACCTTAAAACATCAGGTATA+TGG - chr6_3:68165434-68165453 Msa0957380:intron 30.0%
CCTTAAAACATCAGGTATAT+GGG - chr6_3:68165435-68165454 Msa0957380:intron 30.0%
ACGTTAAATATGCAAGATAG+GGG + chr6_3:68165462-68165481 None:intergenic 30.0%
TATTTACTTTGGGTATGAAG+TGG + chr6_3:68165521-68165540 None:intergenic 30.0%
ATTAGGACATAATGAATCTC+AGG - chr6_3:68165808-68165827 Msa0957380:CDS 30.0%
!!! CCATTTTTTGACGAAGTAAA+AGG + chr6_3:68166043-68166062 None:intergenic 30.0%
! CCTTTTACTTCGTCAAAAAA+TGG - chr6_3:68166040-68166059 Msa0957380:CDS 30.0%
! TTTTATAGTCACCCTGAAAT+TGG - chr6_3:68166081-68166100 Msa0957380:intron 30.0%
TTGAACAAAATGATTTGACG+AGG + chr6_3:68166182-68166201 None:intergenic 30.0%
ATATTAGAGGAGTAGTTTAG+TGG + chr6_3:68166467-68166486 None:intergenic 30.0%
GCATAATATATGTAAGGTTC+GGG - chr6_3:68166674-68166693 Msa0957380:intron 30.0%
CATAATATATGTAAGGTTCG+GGG - chr6_3:68166675-68166694 Msa0957380:intron 30.0%
!!! ATTTTTTTTTGTGGTAGTCG+GGG + chr6_3:68166707-68166726 None:intergenic 30.0%
!!! GATTTTTTTTTGTGGTAGTC+GGG + chr6_3:68166708-68166727 None:intergenic 30.0%
!!! TTGTTTTGAAGGCATTTTCA+TGG - chr6_3:68166852-68166871 Msa0957380:intron 30.0%
!!! TGTTTTGAAGGCATTTTCAT+GGG - chr6_3:68166853-68166872 Msa0957380:intron 30.0%
ATGATGGTACTTATGTTTAG+TGG + chr6_3:68166972-68166991 None:intergenic 30.0%
CAATTGCAGGATATACATTA+AGG - chr6_3:68167723-68167742 Msa0957380:CDS 30.0%
! ATGTATGCTCTGTCTATTTT+TGG - chr6_3:68167761-68167780 Msa0957380:CDS 30.0%
TAATGTCACTACTAATGAGA+AGG + chr6_3:68167817-68167836 None:intergenic 30.0%
! TTGTGGCGTGATTTTAAATT+AGG - chr6_3:68168201-68168220 Msa0957380:intron 30.0%
AATTAGGTTCAGTATTGTGA+TGG - chr6_3:68168217-68168236 Msa0957380:intron 30.0%
ATTAGGTTCAGTATTGTGAT+GGG - chr6_3:68168218-68168237 Msa0957380:intron 30.0%
AAATCGTAATGTGTATTGTC+TGG - chr6_3:68168251-68168270 Msa0957380:intron 30.0%
TCTAGATGTAAGTCATTGTT+GGG - chr6_3:68168583-68168602 Msa0957380:intron 30.0%
! CTCTCTTTTTCTTTTTCTTG+TGG - chr6_3:68168646-68168665 Msa0957380:intron 30.0%
! GTTACTACTTCTTTTTACTC+TGG - chr6_3:68168755-68168774 Msa0957380:intron 30.0%
! TTCTAGAAAAAAAAATGGGC+TGG + chr6_3:68168834-68168853 None:intergenic 30.0%
!! GTCATTTGAAGTAGTTTTCA+TGG + chr6_3:68169017-68169036 None:intergenic 30.0%
!!! TATTTTGTTGTTGTCATTGC+AGG + chr6_3:68169058-68169077 None:intergenic 30.0%
!! GTTTGGTGTATGTTCTATAT+AGG - chr6_3:68169129-68169148 Msa0957380:CDS 30.0%
ACATTCTCAAAGAGAAGAAG+TGG - chr6_3:68164308-68164327 Msa0957380:three_prime_UTR 35.0%
ACATAGAACACAAAGCTCAA+AGG + chr6_3:68164348-68164367 None:intergenic 35.0%
!!! CTTATCATTTTTTCAAGCCG+TGG - chr6_3:68164383-68164402 Msa0957380:three_prime_UTR 35.0%
CACCATGAACCAACTATAAA+AGG - chr6_3:68164593-68164612 Msa0957380:intron 35.0%
!! TCCCTTTTATAGTTGGTTCA+TGG + chr6_3:68164598-68164617 None:intergenic 35.0%
ATGGATCTTCTTTCTTCTCA+TGG - chr6_3:68164683-68164702 Msa0957380:intron 35.0%
!!! CATGTTTTCTGGAATTTGTG+AGG - chr6_3:68164789-68164808 Msa0957380:intron 35.0%
GAATTTGTGAGGATTTGTGA+GGG - chr6_3:68164800-68164819 Msa0957380:intron 35.0%
!! TGATGATGCCTTAAGGTTTT+GGG + chr6_3:68165133-68165152 None:intergenic 35.0%
GTGTTGTCTAAGTCTCTTAT+GGG + chr6_3:68165401-68165420 None:intergenic 35.0%
TGTGTTGTCTAAGTCTCTTA+TGG + chr6_3:68165402-68165421 None:intergenic 35.0%
ACCCAAAACCTTAAAACATC+AGG - chr6_3:68165427-68165446 Msa0957380:intron 35.0%
! CCCATATACCTGATGTTTTA+AGG + chr6_3:68165438-68165457 None:intergenic 35.0%
GATTATATCCCAAGTCGAAT+AGG + chr6_3:68165495-68165514 None:intergenic 35.0%
TTCCTTGCAGAATTTATACC+AGG - chr6_3:68165942-68165961 Msa0957380:intron 35.0%
ATCTTCTTCAGCTTAAGTAG+AGG + chr6_3:68166422-68166441 None:intergenic 35.0%
ACACACACACACATTAGAAA+AGG - chr6_3:68166548-68166567 Msa0957380:intron 35.0%
!!! GTTTTGAAGGCATTTTCATG+GGG - chr6_3:68166854-68166873 Msa0957380:intron 35.0%
AAGGAAAATTAATGACCAGC+AGG + chr6_3:68167430-68167449 None:intergenic 35.0%
! TGCTGGTCATTAATTTTCCT+TGG - chr6_3:68167429-68167448 Msa0957380:intron 35.0%
TAACAAAACATTGGATCCCA+AGG - chr6_3:68167488-68167507 Msa0957380:intron 35.0%
!! GAATTGTTTTGTCAACAACG+AGG + chr6_3:68167698-68167717 None:intergenic 35.0%
AATCAATGATTGAGCAGATC+AGG + chr6_3:68168017-68168036 None:intergenic 35.0%
!! TTTTTGTTTCGGCAAAATCG+TGG - chr6_3:68168102-68168121 Msa0957380:intron 35.0%
TACGATAATGTGACACGATT+TGG - chr6_3:68168125-68168144 Msa0957380:intron 35.0%
TTAGGTTCAGTATTGTGATG+GGG - chr6_3:68168219-68168238 Msa0957380:intron 35.0%
ATCATTGTGTCTCTTGATCA+TGG - chr6_3:68168431-68168450 Msa0957380:intron 35.0%
CTTGATCATGGAAAGAGATT+CGG - chr6_3:68168443-68168462 Msa0957380:intron 35.0%
TTGATCATGGAAAGAGATTC+GGG - chr6_3:68168444-68168463 Msa0957380:intron 35.0%
TCGGGAAAAGGTTATACATT+AGG - chr6_3:68168462-68168481 Msa0957380:intron 35.0%
CAACAATGACTTACATCTAG+AGG + chr6_3:68168584-68168603 None:intergenic 35.0%
CTCTAGATGTAAGTCATTGT+TGG - chr6_3:68168582-68168601 Msa0957380:intron 35.0%
!! GCTTGAGGCTACTTTAAAAT+TGG - chr6_3:68168733-68168752 Msa0957380:intron 35.0%
!! GAGATAAATGAGGTGTTGAA+TGG - chr6_3:68169231-68169250 Msa0957380:CDS 35.0%
TGTTGAATGGATGTTGAAAG+AGG - chr6_3:68169244-68169263 Msa0957380:CDS 35.0%
GAGAGAAGAAAAATGGGAAG+AGG - chr6_3:68164239-68164258 Msa0957380:three_prime_UTR 40.0%
ACATGGTTGTGAATGTGAGT+TGG - chr6_3:68164747-68164766 Msa0957380:intron 40.0%
CATGGTTGTGAATGTGAGTT+GGG - chr6_3:68164748-68164767 Msa0957380:intron 40.0%
GGAATTTGTGAGGATTTGTG+AGG - chr6_3:68164799-68164818 Msa0957380:intron 40.0%
! AGCGCAAAGCAATGATTTGT+TGG - chr6_3:68164989-68165008 Msa0957380:intron 40.0%
!! GCGCAAAGCAATGATTTGTT+GGG - chr6_3:68164990-68165009 Msa0957380:intron 40.0%
!! CGCAAAGCAATGATTTGTTG+GGG - chr6_3:68164991-68165010 Msa0957380:intron 40.0%
! GTGGTGTCTAAGTCTTTTAG+GGG + chr6_3:68165103-68165122 None:intergenic 40.0%
! CGTGGTGTCTAAGTCTTTTA+GGG + chr6_3:68165104-68165123 None:intergenic 40.0%
! ACGTGGTGTCTAAGTCTTTT+AGG + chr6_3:68165105-68165124 None:intergenic 40.0%
!! CTGATGATGCCTTAAGGTTT+TGG + chr6_3:68165134-68165153 None:intergenic 40.0%
GCATCATCAGATATATGGGT+GGG - chr6_3:68165144-68165163 Msa0957380:intron 40.0%
TGTGGATGATTCACACTTGA+GGG + chr6_3:68165254-68165273 None:intergenic 40.0%
ATGTGGATGATTCACACTTG+AGG + chr6_3:68165255-68165274 None:intergenic 40.0%
TCTAAGTCTCTTATGGGTCT+TGG + chr6_3:68165395-68165414 None:intergenic 40.0%
TATCCCAAGTCGAATAGGAA+TGG + chr6_3:68165490-68165509 None:intergenic 40.0%
GTCCTGGTATAAATTCTGCA+AGG + chr6_3:68165947-68165966 None:intergenic 40.0%
! TTAGTGGTTTGGGAATGAGA+TGG + chr6_3:68166451-68166470 None:intergenic 40.0%
GAGGAGTAGTTTAGTGGTTT+GGG + chr6_3:68166461-68166480 None:intergenic 40.0%
AGAGGAGTAGTTTAGTGGTT+TGG + chr6_3:68166462-68166481 None:intergenic 40.0%
! TGAGCTAAGCTCAGTTTGTT+GGG - chr6_3:68166646-68166665 Msa0957380:CDS 40.0%
GAAAGAATTGCAAAGACTCG+AGG - chr6_3:68166899-68166918 Msa0957380:intron 40.0%
TTTGCAGATGAAGAAGCTCA+TGG - chr6_3:68167318-68167337 Msa0957380:intron 40.0%
GTCGAGAAACATGTGACATA+AGG + chr6_3:68167408-68167427 None:intergenic 40.0%
GGAGGAGGTTAACAAAACAT+TGG - chr6_3:68167479-68167498 Msa0957380:intron 40.0%
TTTGTCAACAACGAGGTTTG+AGG + chr6_3:68167691-68167710 None:intergenic 40.0%
ACACATGATATATCGGCAAG+TGG - chr6_3:68167944-68167963 Msa0957380:intron 40.0%
ATGATTGAGCAGATCAGGTT+TGG + chr6_3:68168012-68168031 None:intergenic 40.0%
TTAATGTTAGCTAGGTCGAG+AGG + chr6_3:68168052-68168071 None:intergenic 40.0%
! GATTTGGCTCAACAGTTTGA+AGG - chr6_3:68168141-68168160 Msa0957380:intron 40.0%
TCCAAGCTCTCTCAACAAAT+GGG + chr6_3:68168307-68168326 None:intergenic 40.0%
AGTGTCTTGGTGAGATTCTA+GGG - chr6_3:68168373-68168392 Msa0957380:intron 40.0%
ATGGAAAGAGATTCGGGAAA+AGG - chr6_3:68168450-68168469 Msa0957380:intron 40.0%
! TGTGGTTTGTGCTTTACACT+TGG - chr6_3:68168664-68168683 Msa0957380:intron 40.0%
CAAATCATTGCTTTGCGCTC+TGG + chr6_3:68164988-68165007 None:intergenic 45.0%
!! TCTAAGTCTTTTAGGGGTCC+TGG + chr6_3:68165097-68165116 None:intergenic 45.0%
!!! TGATGCCTTAAGGTTTTGGG+TGG + chr6_3:68165130-68165149 None:intergenic 45.0%
GGCATCATCAGATATATGGG+TGG - chr6_3:68165143-68165162 Msa0957380:intron 45.0%
! GATTATGTCCCACATCGACT+AGG + chr6_3:68165204-68165223 None:intergenic 45.0%
TGGATGATTCACACTTGAGG+GGG + chr6_3:68165252-68165271 None:intergenic 45.0%
GTGGATGATTCACACTTGAG+GGG + chr6_3:68165253-68165272 None:intergenic 45.0%
!! TGTGGATTAGGCTAGTGATG+TGG + chr6_3:68165272-68165291 None:intergenic 45.0%
GTGGGATCTTAGTGTGGATT+AGG + chr6_3:68165284-68165303 None:intergenic 45.0%
AACAACTGGTATCAAAGCCC+TGG + chr6_3:68165330-68165349 None:intergenic 45.0%
! GGCTTTGATACCAGTTGTTG+AGG - chr6_3:68165331-68165350 Msa0957380:intron 45.0%
ATACCAGTTGTTGAGGAGTC+TGG - chr6_3:68165338-68165357 Msa0957380:intron 45.0%
TACCAGTTGTTGAGGAGTCT+GGG - chr6_3:68165339-68165358 Msa0957380:intron 45.0%
TCCTCCATTCCTATTCGACT+TGG - chr6_3:68165483-68165502 Msa0957380:intron 45.0%
CCTCCATTCCTATTCGACTT+GGG - chr6_3:68165484-68165503 Msa0957380:intron 45.0%
CCTAATGAATTGCCAGCTTG+TGG + chr6_3:68165794-68165813 None:intergenic 45.0%
CCACAAGCTGGCAATTCATT+AGG - chr6_3:68165791-68165810 Msa0957380:intron 45.0%
TGATCAGTTACCTCTGCTTG+CGG + chr6_3:68166005-68166024 None:intergenic 45.0%
GTGAGCTAAGCTCAGTTTGT+TGG - chr6_3:68166645-68166664 Msa0957380:CDS 45.0%
! ACCCATTTGTTGAGAGAGCT+TGG - chr6_3:68168303-68168322 Msa0957380:intron 45.0%
CTCCAAGCTCTCTCAACAAA+TGG + chr6_3:68168308-68168327 None:intergenic 45.0%
GGCTAAGAGTTTGAGTGTCT+TGG - chr6_3:68168360-68168379 Msa0957380:intron 45.0%
GAGTGTCTTGGTGAGATTCT+AGG - chr6_3:68168372-68168391 Msa0957380:intron 45.0%
!! TCTTGGTGAGATTCTAGGGT+TGG - chr6_3:68168377-68168396 Msa0957380:intron 45.0%
AGTCATTGTTGGGTCGAACT+AGG - chr6_3:68168593-68168612 Msa0957380:intron 45.0%
CGAACTAGGTGAACAACGTT+TGG - chr6_3:68168607-68168626 Msa0957380:intron 45.0%
!!! TATTTTTAAAAGATAATATA+GGG + chr6_3:68165896-68165915 None:intergenic 5.0%
!!! TTATTTTTAAAAGATAATAT+AGG + chr6_3:68165897-68165916 None:intergenic 5.0%
!!! TAAAAAAAAAAAAAGTTTTA+AGG + chr6_3:68166331-68166350 None:intergenic 5.0%
!!! TTGTATATTTATTTATTTTT+TGG - chr6_3:68166829-68166848 Msa0957380:intron 5.0%
!! TGAAAAATAATAAAATTTAA+TGG + chr6_3:68167058-68167077 None:intergenic 5.0%
GGGAAGAGGAAGAGTAGTGT+TGG - chr6_3:68164253-68164272 Msa0957380:three_prime_UTR 50.0%
CCAACAAACTTCGCCACTTC+CGG + chr6_3:68165028-68165047 None:intergenic 50.0%
! CGGAAGTGGCGAAGTTTGTT+GGG - chr6_3:68165026-68165045 Msa0957380:intron 50.0%
!! GGAAGTGGCGAAGTTTGTTG+GGG - chr6_3:68165027-68165046 Msa0957380:intron 50.0%
!!! TAAGGTTTTGGGTGGAGACG+TGG + chr6_3:68165122-68165141 None:intergenic 50.0%
CGTCTCCACCCAAAACCTTA+AGG - chr6_3:68165122-68165141 Msa0957380:intron 50.0%
TCCTCCATTCCTAGTCGATG+TGG - chr6_3:68165192-68165211 Msa0957380:intron 50.0%
CCTCCATTCCTAGTCGATGT+GGG - chr6_3:68165193-68165212 Msa0957380:intron 50.0%
! TGTCCCACATCGACTAGGAA+TGG + chr6_3:68165199-68165218 None:intergenic 50.0%
CACTTGAGGGGGACTTTGTT+GGG + chr6_3:68165241-68165260 None:intergenic 50.0%
ACACTTGAGGGGGACTTTGT+TGG + chr6_3:68165242-68165261 None:intergenic 50.0%
AAGCCCTGGTTAGGCTCAAT+GGG + chr6_3:68165316-68165335 None:intergenic 50.0%
AAAGCCCTGGTTAGGCTCAA+TGG + chr6_3:68165317-68165336 None:intergenic 50.0%
CTGGTATCAAAGCCCTGGTT+AGG + chr6_3:68165325-68165344 None:intergenic 50.0%
ACCAGTTGTTGAGGAGTCTG+GGG - chr6_3:68165340-68165359 Msa0957380:intron 50.0%
CCCAAGTCGAATAGGAATGG+AGG + chr6_3:68165487-68165506 None:intergenic 50.0%
CGTTACAACAAGCCACAAGC+TGG - chr6_3:68165779-68165798 Msa0957380:intron 50.0%
TTGCTGACGAGCTTGTGTGA+GGG + chr6_3:68166940-68166959 None:intergenic 50.0%
TCACATGTTTCTCGACCTGC+TGG - chr6_3:68167412-68167431 Msa0957380:intron 50.0%
CCTGACAACGTATACAGCCA+AGG + chr6_3:68167449-68167468 None:intergenic 50.0%
CCTTGGCTGTATACGTTGTC+AGG - chr6_3:68167446-68167465 Msa0957380:intron 50.0%
ACGTTGTCAGGTGCATCACT+TGG - chr6_3:68167458-68167477 Msa0957380:intron 50.0%
TTGTCAGGTGCATCACTTGG+AGG - chr6_3:68167461-68167480 Msa0957380:intron 50.0%
GGCGCGAGATGCATAAATTG+TGG - chr6_3:68168184-68168203 Msa0957380:intron 50.0%
! GTTGTTGATGCTGCTGCTTG+AGG - chr6_3:68168718-68168737 Msa0957380:intron 50.0%
CCGGAAGTGGCGAAGTTTGT+TGG - chr6_3:68165025-68165044 Msa0957380:intron 55.0%
! CCCACATCGACTAGGAATGG+AGG + chr6_3:68165196-68165215 None:intergenic 55.0%
GCGAGAGTGGGATCTTAGTG+TGG + chr6_3:68165290-68165309 None:intergenic 55.0%
TCCCCCATTGAGCCTAACCA+GGG - chr6_3:68165310-68165329 Msa0957380:intron 55.0%
AGCCCTGGTTAGGCTCAATG+GGG + chr6_3:68165315-68165334 None:intergenic 55.0%
TCCCCAGACTCCTCAACAAC+TGG + chr6_3:68165344-68165363 None:intergenic 55.0%
GTTGCTGACGAGCTTGTGTG+AGG + chr6_3:68166941-68166960 None:intergenic 55.0%
TCAGGTGCATCACTTGGAGG+AGG - chr6_3:68167464-68167483 Msa0957380:intron 55.0%
CATCGCCACTTCGCCACTTC+CGG + chr6_3:68165064-68165083 None:intergenic 60.0%
GGAAGTGGCGAAGTGGCGAT+GGG - chr6_3:68165063-68165082 Msa0957380:intron 60.0%
!! TGGCGATGGGCTAAACGTCC+AGG - chr6_3:68165076-68165095 Msa0957380:intron 60.0%
CTCAATGGGGGAGCGAGAGT+GGG + chr6_3:68165302-68165321 None:intergenic 60.0%
CTCCCCCATTGAGCCTAACC+AGG - chr6_3:68165309-68165328 Msa0957380:intron 60.0%
GCCCTGGTTAGGCTCAATGG+GGG + chr6_3:68165314-68165333 None:intergenic 60.0%
AGTCTCTCGACCGCAAGCAG+AGG - chr6_3:68165992-68166011 Msa0957380:intron 60.0%
GAAGCTCATGGCACGAGCTG+AGG - chr6_3:68167330-68167349 Msa0957380:intron 60.0%
TGTTGGGGAGTCCAGAGCGC+CGG - chr6_3:68164974-68164993 Msa0957380:intron 65.0%
TGTTGGGGAGTCCAGAGCGC+CGG - chr6_3:68164974-68164993 Msa0957380:intron 65.0%
CGGAAGTGGCGAAGTGGCGA+TGG - chr6_3:68165062-68165081 Msa0957380:intron 65.0%
GCTCAATGGGGGAGCGAGAG+TGG + chr6_3:68165303-68165322 None:intergenic 65.0%
!! TGAGGAGTCTGGGGAGCGTC+AGG - chr6_3:68165349-68165368 Msa0957380:intron 65.0%
!! GGGAGCGTCAGGAGCAGCAA+TGG - chr6_3:68165360-68165379 Msa0957380:intron 65.0%
!! GGAGTCCAGAGCGCCGGAAG+TGG - chr6_3:68165012-68165031 Msa0957380:intron 70.0%
CTTCGCCACTTCCGGCGCTC+TGG + chr6_3:68165020-68165039 None:intergenic 70.0%
!! GGAGTCCAGAGCGCCGGAAG+TGG - chr6_3:68165012-68165031 Msa0957380:intron 70.0%
CTTCGCCACTTCCGGCGCTC+TGG + chr6_3:68165020-68165039 None:intergenic 70.0%
!! GAGCGCCGGAAGTGGCGAAG+TGG - chr6_3:68165020-68165039 Msa0957380:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 68164215 68169332 68164215 ID=Msa0957380;Name=Msa0957380
chr6_3 mRNA 68164215 68169332 68164215 ID=Msa0957380-mRNA-1;Parent=Msa0957380;Name=Msa0957380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=36|0.71|0.62|1|0.85|0.75|8|356|193
chr6_3 exon 68164215 68164569 68164215 ID=Msa0957380-mRNA-1:exon:12563;Parent=Msa0957380-mRNA-1
chr6_3 exon 68165803 68165872 68165803 ID=Msa0957380-mRNA-1:exon:12562;Parent=Msa0957380-mRNA-1
chr6_3 exon 68166038 68166079 68166038 ID=Msa0957380-mRNA-1:exon:12561;Parent=Msa0957380-mRNA-1
chr6_3 exon 68166181 68166222 68166181 ID=Msa0957380-mRNA-1:exon:12560;Parent=Msa0957380-mRNA-1
chr6_3 exon 68166585 68166684 68166585 ID=Msa0957380-mRNA-1:exon:12559;Parent=Msa0957380-mRNA-1
chr6_3 exon 68167534 68167595 68167534 ID=Msa0957380-mRNA-1:exon:12558;Parent=Msa0957380-mRNA-1
chr6_3 exon 68167718 68167802 68167718 ID=Msa0957380-mRNA-1:exon:12557;Parent=Msa0957380-mRNA-1
chr6_3 exon 68169115 68169332 68169115 ID=Msa0957380-mRNA-1:exon:12556;Parent=Msa0957380-mRNA-1
chr6_3 five_prime_UTR 68169297 68169332 68169297 ID=Msa0957380-mRNA-1:five_prime_utr;Parent=Msa0957380-mRNA-1
chr6_3 CDS 68169115 68169296 68169115 ID=Msa0957380-mRNA-1:cds;Parent=Msa0957380-mRNA-1
chr6_3 CDS 68167718 68167802 68167718 ID=Msa0957380-mRNA-1:cds;Parent=Msa0957380-mRNA-1
chr6_3 CDS 68167534 68167595 68167534 ID=Msa0957380-mRNA-1:cds;Parent=Msa0957380-mRNA-1
chr6_3 CDS 68166585 68166684 68166585 ID=Msa0957380-mRNA-1:cds;Parent=Msa0957380-mRNA-1
chr6_3 CDS 68166181 68166222 68166181 ID=Msa0957380-mRNA-1:cds;Parent=Msa0957380-mRNA-1
chr6_3 CDS 68166038 68166079 68166038 ID=Msa0957380-mRNA-1:cds;Parent=Msa0957380-mRNA-1
chr6_3 CDS 68165804 68165872 68165804 ID=Msa0957380-mRNA-1:cds;Parent=Msa0957380-mRNA-1
chr6_3 three_prime_UTR 68165803 68165803 68165803 ID=Msa0957380-mRNA-1:three_prime_utr;Parent=Msa0957380-mRNA-1
chr6_3 three_prime_UTR 68164215 68164569 68164215 ID=Msa0957380-mRNA-1:three_prime_utr;Parent=Msa0957380-mRNA-1
Gene Sequence

>Msa0957380

ATGGGAAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTTCTATGTGATGCTGAAGTTGCACTTATCATTTTTTCAAGCCGTGGCAAGCTTTTTCAATATAGTAGCACTGATATAAACAAAATCATTGAAAGGTATCGGCAATGTCGTTACAACAAGCCACAAGCTGGCAATTCATTAGGACATAATGAATCTCAGAATTTATACCAGGACTATTTAAAATTAAAGGCAAAATATGAGTCTCTCGACCGCAAGCAGAGGCATTTTCATGGGGAAGAACTTGAGCAACTTAGCATGAAAGAATTGCAAAGACTCGAGGAACAACTAGACTTAACCCTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCATGGCACGAGCTGAGGAATTACGTGAAAAAGTGCATCACTTGGAGGAGGTTAACAAAACATTGGATCCCAAGGCAATAGATGAAACCTCAAACCTCGTTGTTGACAAAACAATTCATATTCAATTGCAGGATATACATTAA
Protein sequence

>Msa0957380

MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYNKPQAGNSLGHNESQNLYQDYLKLKAKYESLDRKQRHFHGEELEQLSMKELQRLEEQLDLTLTQARQQQMKKLMARAEELREKVHHLEEVNKTLDPKAIDETSNLVVDKTIHIQLQDIH*