AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002070 MtrunA17_Chr6g0474371 97.927 193 3 1 1 192 1 193 6.65e-139 385
Msa1002070 MtrunA17_Chr1g0204111 68.605 172 54 0 1 172 17 188 2.94e-79 236
Msa1002070 MtrunA17_Chr8g0351051 58.721 172 70 1 1 172 1 171 1.98e-61 191
Msa1002070 MtrunA17_Chr6g0455511 51.087 184 77 3 1 178 1 177 2.71e-53 170
Msa1002070 MtrunA17_Chr3g0122251 51.087 184 81 3 1 178 1 181 4.64e-53 169
Msa1002070 MtrunA17_Chr7g0220111 52.023 173 80 2 1 172 1 171 2.72e-52 167
Msa1002070 MtrunA17_Chr5g0420091 47.208 197 90 4 1 185 1 195 7.58e-52 166
Msa1002070 MtrunA17_Chr4g0061691 55.621 169 73 2 1 168 1 168 1.11e-51 166
Msa1002070 MtrunA17_Chr4g0061671 47.399 173 87 3 1 172 1 170 1.10e-45 149
Msa1002070 MtrunA17_Chr8g0366231 52.326 172 74 4 1 168 1 168 3.35e-45 149
Msa1002070 MtrunA17_Chr5g0420081 49.425 174 84 3 1 172 1 172 4.23e-44 146
Msa1002070 MtrunA17_Chr7g0220121 47.647 170 83 3 1 168 1 166 2.48e-42 142
Msa1002070 MtrunA17_Chr3g0077501 43.023 172 97 1 1 172 1 171 6.65e-39 132
Msa1002070 MtrunA17_Chr8g0351041 44.172 163 87 3 1 161 1 161 9.31e-38 128
Msa1002070 MtrunA17_Chr3g0097101 41.860 172 99 1 1 172 16 186 1.33e-37 130
Msa1002070 MtrunA17_Chr8g0351031 43.353 173 94 3 1 171 1 171 2.94e-37 128
Msa1002070 MtrunA17_Chr4g0057151 45.238 168 91 1 1 168 1 167 8.02e-37 127
Msa1002070 MtrunA17_Chr2g0284911 40.116 172 102 1 1 172 16 186 1.07e-36 128
Msa1002070 MtrunA17_Chr7g0246431 44.970 169 90 2 1 168 1 167 1.44e-36 126
Msa1002070 MtrunA17_Chr5g0411691 43.023 172 95 2 1 172 1 169 2.78e-36 126
Msa1002070 MtrunA17_Chr8g0380021 38.953 172 104 1 1 172 17 187 4.49e-36 126
Msa1002070 MtrunA17_Chr2g0279821 42.442 172 97 1 1 172 1 170 4.76e-36 125
Msa1002070 MtrunA17_Chr4g0049541 45.000 140 75 1 1 140 1 138 1.41e-32 116
Msa1002070 MtrunA17_Chr3g0125241 41.781 146 77 2 1 144 26 165 4.36e-32 114
Msa1002070 MtrunA17_Chr4g0020221 40.704 199 99 7 1 185 1 194 4.29e-30 111
Msa1002070 MtrunA17_Chr1g0164791 37.209 172 104 2 1 168 1 172 9.46e-30 109
Msa1002070 MtrunA17_Chr5g0412461 39.884 173 93 2 1 168 1 167 2.37e-29 108
Msa1002070 MtrunA17_Chr1g0159661 39.241 158 86 3 1 154 1 152 3.77e-29 106
Msa1002070 MtrunA17_Chr5g0404951 38.150 173 97 3 1 168 1 168 3.94e-29 107
Msa1002070 MtrunA17_Chr5g0412271 40.462 173 92 3 1 168 1 167 4.23e-29 107
Msa1002070 MtrunA17_Chr7g0246381 81.667 60 11 0 1 60 1 60 6.46e-29 102
Msa1002070 MtrunA17_Chr2g0308251 73.913 69 18 0 1 69 1 69 7.43e-29 102
Msa1002070 MtrunA17_Chr5g0427401 39.080 174 99 2 1 172 1 169 8.14e-29 107
Msa1002070 MtrunA17_Chr3g0142191 38.235 170 97 2 1 168 1 164 9.94e-29 107
Msa1002070 MtrunA17_Chr4g0018421 36.181 199 110 6 1 187 1 194 1.54e-28 105
Msa1002070 MtrunA17_Chr8g0377561 81.034 58 11 0 1 58 1 58 4.12e-27 99.0
Msa1002070 MtrunA17_Chr4g0049901 36.957 184 106 4 1 179 27 205 5.31e-27 102
Msa1002070 MtrunA17_Chr1g0173161 70.000 60 18 0 1 60 1 60 1.88e-23 89.0
Msa1002070 MtrunA17_Chr5g0427921 63.333 60 22 0 1 60 1 60 4.46e-22 84.7
Msa1002070 MtrunA17_Chr2g0292791 52.941 68 32 0 2 69 9 76 9.52e-21 86.3
Msa1002070 MtrunA17_Chr1g0208561 51.429 70 32 1 2 69 7 76 2.83e-20 84.7
Msa1002070 MtrunA17_Chr3g0089141 51.429 70 32 1 2 69 7 76 3.53e-20 84.3
Msa1002070 MtrunA17_Chr2g0325971 50.000 70 33 1 2 69 7 76 1.56e-19 82.8
Msa1002070 MtrunA17_Chr8g0355091 51.471 68 33 0 2 69 9 76 1.63e-19 82.8
Msa1002070 MtrunA17_Chr3g0099421 52.941 68 32 0 2 69 34 101 1.73e-19 83.2
Msa1002070 MtrunA17_Chr1g0206701 50.000 68 34 0 2 69 9 76 2.20e-19 82.4
Msa1002070 MtrunA17_Chr3g0099411 50.000 68 34 0 2 69 9 76 2.30e-19 82.0
Msa1002070 MtrunA17_Chr1g0206721 50.000 68 34 0 2 69 9 76 3.07e-19 82.0
Msa1002070 MtrunA17_Chr3g0134451 39.844 128 67 4 1 127 1 119 3.54e-19 83.2
Msa1002070 MtrunA17_Chr3g0119901 46.341 82 42 1 1 82 8 87 4.83e-19 80.9
Msa1002070 MtrunA17_Chr1g0188671 52.941 68 32 0 2 69 47 114 5.41e-19 82.0
Msa1002070 MtrunA17_Chr1g0187361 51.471 68 33 0 2 69 9 76 7.82e-19 80.9
Msa1002070 MtrunA17_Chr1g0149391 51.471 68 33 0 2 69 9 76 8.32e-19 80.9
Msa1002070 MtrunA17_Chr5g0419601 52.174 69 33 0 1 69 8 76 1.31e-18 80.5
Msa1002070 MtrunA17_Chr1g0208581 48.571 70 34 1 2 69 7 76 2.65e-18 79.3
Msa1002070 MtrunA17_Chr8g0377551 41.905 105 61 0 64 168 3 107 3.09e-18 78.2
Msa1002070 MtrunA17_Chr2g0317451 51.471 68 33 0 2 69 9 76 3.91e-18 79.3
Msa1002070 MtrunA17_Chr2g0317481 51.471 68 33 0 2 69 9 76 4.11e-18 79.0
Msa1002070 MtrunA17_Chr4g0044071 55.932 59 26 0 1 59 1 59 4.52e-18 75.9
Msa1002070 MtrunA17_Chr3g0085241 46.154 78 40 1 1 78 40 115 4.58e-18 79.3
Msa1002070 MtrunA17_Chr8g0357771 32.609 138 84 3 1 133 1 134 4.97e-18 77.8
Msa1002070 MtrunA17_Chr1g0206991 47.059 68 36 0 2 69 9 76 1.21e-17 76.6
Msa1002070 MtrunA17_Chr1g0175611 37.755 98 58 1 1 98 1 95 2.56e-17 75.5
Msa1002070 MtrunA17_Chr4g0074101 37.736 106 63 1 1 106 1 103 3.01e-17 75.9
Msa1002070 MtrunA17_Chr8g0379021 38.000 100 59 1 2 98 12 111 3.58e-17 75.5
Msa1002070 MtrunA17_Chr2g0333981 31.481 162 99 4 1 154 11 168 3.66e-17 75.5
Msa1002070 MtrunA17_Chr4g0018951 34.677 124 71 3 16 132 26 146 5.06e-17 74.7
Msa1002070 MtrunA17_Chr5g0425191 57.627 59 25 0 1 59 1 59 6.20e-17 72.8
Msa1002070 MtrunA17_Chr1g0180591 33.333 135 81 3 1 130 1 131 1.09e-16 73.9
Msa1002070 MtrunA17_Chr1g0175601 34.783 138 81 3 1 133 1 134 1.17e-16 73.9
Msa1002070 MtrunA17_Chr5g0422421 50.000 68 34 0 2 69 9 76 1.19e-16 75.1
Msa1002070 MtrunA17_Chr5g0422941 48.529 68 35 0 2 69 9 76 1.47e-16 75.1
Msa1002070 MtrunA17_Chr1g0206691 52.542 59 28 0 11 69 1 59 1.62e-16 74.7
Msa1002070 MtrunA17_Chr1g0166611 71.111 45 13 0 16 60 20 64 1.90e-16 72.4
Msa1002070 MtrunA17_Chr3g0089151 45.588 68 37 0 2 69 9 76 3.90e-16 71.6
Msa1002070 MtrunA17_Chr2g0300421 47.143 70 35 1 2 69 7 76 6.14e-16 72.0
Msa1002070 MtrunA17_Chr1g0169761 37.374 99 59 1 1 99 1 96 6.71e-16 72.0
Msa1002070 MtrunA17_Chr2g0300441 45.714 70 36 1 2 69 7 76 9.86e-16 72.8
Msa1002070 MtrunA17_Chr8g0376821 32.593 135 88 2 1 133 1 134 1.15e-15 71.6
Msa1002070 MtrunA17_Chr4g0052061 33.582 134 76 2 1 134 1 121 3.26e-15 69.7
Msa1002070 MtrunA17_Chr4g0052081 43.478 69 39 0 1 69 1 69 5.03e-15 69.7
Msa1002070 MtrunA17_Chr1g0187351 49.153 59 30 0 11 69 1 59 6.65e-15 66.6
Msa1002070 MtrunA17_Chr3g0111841 50.000 60 30 0 7 66 1 60 1.43e-14 65.9
Msa1002070 MtrunA17_Chr4g0060841 43.836 73 39 1 1 71 1 73 7.72e-14 68.6
Msa1002070 MtrunA17_Chr2g0308271 39.167 120 69 3 54 172 27 143 2.01e-13 65.9
Msa1002070 MtrunA17_Chr4g0071601 46.377 69 37 0 1 69 11 79 3.01e-13 65.1
Msa1002070 MtrunA17_Chr7g0238991 50.000 52 26 0 18 69 37 88 3.34e-12 63.2
Msa1002070 MtrunA17_Chr8g0356071 36.620 71 45 0 1 71 1 71 5.60e-12 61.2
Msa1002070 MtrunA17_Chr3g0111931 55.357 56 25 0 14 69 2 57 6.26e-12 59.7
Msa1002070 MtrunA17_Chr5g0417661 47.170 53 28 0 1 53 56 108 1.29e-11 59.3
Msa1002070 MtrunA17_Chr3g0111831 46.032 63 34 0 7 69 9 71 9.04e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002070 AT2G45650.1 52.128 188 83 3 1 188 1 181 7.25e-56 177
Msa1002070 AT5G15800.1 52.601 173 80 2 1 172 1 172 1.78e-52 169
Msa1002070 AT3G02310.2 52.326 172 80 2 1 171 1 171 1.81e-52 167
Msa1002070 AT5G15800.2 52.601 173 80 2 1 172 1 172 2.71e-52 168
Msa1002070 AT1G24260.1 53.757 173 72 3 1 168 1 170 3.31e-52 168
Msa1002070 AT3G02310.1 52.023 173 81 2 1 172 1 172 5.95e-52 167
Msa1002070 AT3G61120.1 52.976 168 76 2 1 168 1 165 4.25e-51 165
Msa1002070 AT1G24260.2 53.179 173 74 3 1 168 1 171 4.70e-51 165
Msa1002070 AT2G03710.3 48.276 174 86 2 1 172 1 172 6.81e-49 157
Msa1002070 AT1G24260.3 50.286 175 80 3 1 170 1 173 1.93e-48 158
Msa1002070 AT5G60910.1 50.575 174 82 3 1 172 1 172 3.22e-48 157
Msa1002070 AT2G03710.2 48.235 170 84 2 1 168 1 168 7.37e-48 157
Msa1002070 AT2G03710.1 48.235 170 84 2 1 168 1 168 8.44e-48 157
Msa1002070 AT1G69120.2 50.857 175 80 3 1 172 1 172 2.55e-47 155
Msa1002070 AT1G26310.1 50.575 174 84 2 1 172 1 174 3.65e-47 155
Msa1002070 AT1G69120.1 50.857 175 80 3 1 172 1 172 1.18e-46 154
Msa1002070 AT4G22950.2 45.930 172 91 1 1 172 1 170 5.98e-39 131
Msa1002070 AT4G11880.2 49.686 159 77 3 1 158 1 157 1.20e-37 128
Msa1002070 AT4G11880.3 49.686 159 77 3 1 158 1 157 1.20e-37 128
Msa1002070 AT4G22950.3 45.614 171 91 1 1 171 1 169 1.35e-37 129
Msa1002070 AT4G22950.1 45.614 171 91 1 1 171 1 169 1.35e-37 129
Msa1002070 AT4G18960.1 40.936 171 100 1 2 172 18 187 2.54e-37 130
Msa1002070 AT2G42830.2 40.351 171 95 2 1 168 16 182 6.67e-37 129
Msa1002070 AT4G09960.1 40.571 175 97 3 1 172 1 171 8.40e-37 128
Msa1002070 AT3G58780.5 40.571 175 97 2 1 172 22 192 9.39e-37 128
Msa1002070 AT4G09960.6 40.571 175 97 3 1 172 2 172 9.39e-37 127
Msa1002070 AT3G58780.1 40.571 175 97 2 1 172 16 186 9.71e-37 128
Msa1002070 AT4G09960.5 40.571 175 97 3 1 172 11 181 1.07e-36 128
Msa1002070 AT4G09960.2 42.424 165 88 3 1 162 1 161 1.45e-36 127
Msa1002070 AT3G30260.1 50.000 150 65 5 1 144 1 146 2.38e-36 127
Msa1002070 AT4G09960.3 40.571 175 97 3 1 172 27 197 2.38e-36 127
Msa1002070 AT2G42830.1 40.000 175 98 2 1 172 16 186 3.21e-36 127
Msa1002070 AT3G57230.2 45.395 152 70 3 1 148 1 143 7.23e-36 123
Msa1002070 AT3G58780.4 43.046 151 79 2 1 148 16 162 2.84e-35 125
Msa1002070 AT5G13790.2 42.408 191 95 3 1 186 1 181 3.43e-35 125
Msa1002070 AT4G09960.4 42.581 155 82 3 1 152 96 246 8.35e-35 125
Msa1002070 AT5G62165.17 42.767 159 88 2 1 158 1 157 1.11e-34 120
Msa1002070 AT5G62165.12 42.767 159 88 2 1 158 1 157 1.11e-34 120
Msa1002070 AT5G62165.11 42.767 159 88 2 1 158 1 157 1.11e-34 120
Msa1002070 AT3G57230.1 44.654 159 75 3 1 155 1 150 1.48e-34 122
Msa1002070 AT3G57230.4 44.654 159 75 3 1 155 1 150 1.48e-34 122
Msa1002070 AT4G11880.4 50.694 144 68 3 1 143 1 142 1.73e-34 122
Msa1002070 AT4G11880.1 50.694 144 68 3 1 143 1 142 1.73e-34 122
Msa1002070 AT5G62165.3 37.949 195 116 3 1 192 1 193 2.09e-34 121
Msa1002070 AT5G62165.1 37.949 195 116 3 1 192 1 193 2.09e-34 121
Msa1002070 AT5G62165.2 37.949 195 116 3 1 192 1 193 2.09e-34 121
Msa1002070 AT4G37940.1 39.535 172 102 1 1 172 1 170 2.65e-34 121
Msa1002070 AT5G62165.10 43.038 158 87 2 1 157 1 156 4.02e-34 120
Msa1002070 AT5G62165.4 43.038 158 87 2 1 157 1 156 4.02e-34 120
Msa1002070 AT2G45660.2 42.138 159 89 2 1 158 1 157 4.82e-34 119
Msa1002070 AT2G45660.1 39.560 182 107 2 1 181 1 180 1.04e-33 119
Msa1002070 AT5G62165.6 44.138 145 78 2 1 144 1 143 1.53e-33 117
Msa1002070 AT5G62165.9 44.138 145 78 2 1 144 1 143 1.53e-33 117
Msa1002070 AT5G62165.7 44.138 145 78 2 1 144 1 143 1.53e-33 117
Msa1002070 AT5G62165.8 44.138 145 78 2 1 144 1 143 1.53e-33 117
Msa1002070 AT5G62165.13 44.138 145 78 2 1 144 1 143 1.53e-33 117
Msa1002070 AT4G37940.4 38.150 173 105 1 1 173 1 171 2.56e-33 118
Msa1002070 AT5G13790.1 41.489 188 98 2 1 186 1 178 3.82e-33 119
Msa1002070 AT4G37940.3 42.857 140 78 1 1 140 1 138 4.87e-33 116
Msa1002070 AT3G58780.2 39.429 175 92 3 1 172 16 179 1.32e-32 117
Msa1002070 AT2G22630.1 39.881 168 86 3 1 160 1 161 6.15e-32 115
Msa1002070 AT2G22630.2 39.881 168 86 3 1 160 1 161 6.15e-32 115
Msa1002070 AT5G20240.1 38.372 172 91 3 1 163 1 166 1.16e-31 114
Msa1002070 AT3G58780.3 36.500 200 95 3 1 172 16 211 2.41e-31 115
Msa1002070 AT5G20240.2 40.411 146 79 2 1 144 1 140 7.20e-31 110
Msa1002070 AT2G14210.1 44.937 158 79 4 1 156 1 152 2.20e-30 111
Msa1002070 AT2G14210.2 44.937 158 79 4 1 156 1 152 2.36e-30 111
Msa1002070 AT2G22540.3 39.306 173 94 2 1 168 1 167 1.12e-29 110
Msa1002070 AT2G22540.1 39.306 173 94 2 1 168 1 167 1.12e-29 110
Msa1002070 AT5G51860.2 38.037 163 94 1 1 156 1 163 3.05e-29 107
Msa1002070 AT5G51860.1 38.037 163 94 1 1 156 1 163 3.61e-29 107
Msa1002070 AT5G51870.1 40.449 178 88 4 1 165 1 173 1.70e-28 105
Msa1002070 AT5G62165.14 63.380 71 26 0 1 71 1 71 7.78e-28 101
Msa1002070 AT3G57390.3 41.975 162 86 3 1 155 1 161 9.11e-28 104
Msa1002070 AT5G51870.2 40.132 152 81 2 1 147 1 147 1.25e-27 102
Msa1002070 AT5G51870.4 38.342 193 100 5 1 179 1 188 1.76e-27 103
Msa1002070 AT3G57390.1 41.975 162 86 3 1 155 1 161 2.05e-27 104
Msa1002070 AT5G51870.3 38.342 193 100 5 1 179 11 198 2.07e-27 103
Msa1002070 AT5G51870.5 40.132 152 81 2 1 147 24 170 3.39e-27 102
Msa1002070 AT2G22540.2 39.306 173 89 3 1 168 1 162 4.94e-27 102
Msa1002070 AT4G24540.1 38.286 175 101 2 1 172 1 171 6.75e-27 102
Msa1002070 AT5G10140.4 38.182 165 89 4 1 161 1 156 6.86e-27 101
Msa1002070 AT5G65080.3 39.412 170 93 3 1 169 8 168 1.06e-26 100
Msa1002070 AT5G23260.2 35.632 174 98 3 1 168 1 166 1.40e-26 102
Msa1002070 AT5G23260.4 35.632 174 98 3 1 168 17 182 2.42e-26 102
Msa1002070 AT5G10140.2 37.931 174 98 3 1 173 1 165 1.89e-25 97.1
Msa1002070 AT5G65050.2 35.714 182 107 4 1 181 1 173 2.72e-25 97.1
Msa1002070 AT5G10140.3 37.931 174 98 3 1 173 1 165 5.34e-25 96.3
Msa1002070 AT5G23260.3 36.601 153 83 3 1 147 1 145 7.90e-25 97.4
Msa1002070 AT5G23260.1 35.632 174 93 4 1 168 17 177 1.16e-24 97.4
Msa1002070 AT5G65050.3 36.994 173 99 4 1 172 1 164 1.57e-24 95.5
Msa1002070 AT3G54340.1 35.294 170 102 2 1 168 1 164 2.43e-24 95.9
Msa1002070 AT5G10140.1 37.908 153 85 3 1 152 1 144 3.28e-24 94.7
Msa1002070 AT1G71692.1 33.173 208 111 4 1 186 1 202 7.05e-24 94.0
Msa1002070 AT5G65050.1 37.107 159 90 4 1 158 1 150 1.00e-22 90.5
Msa1002070 AT5G65050.5 35.838 173 90 4 1 172 1 153 2.68e-22 89.4
Msa1002070 AT1G77080.11 38.202 178 100 3 1 177 1 169 3.70e-22 88.6
Msa1002070 AT1G77080.5 38.462 169 94 3 1 168 1 160 1.54e-21 87.0
Msa1002070 AT5G65060.3 33.862 189 113 5 1 186 1 180 1.71e-21 87.4
Msa1002070 AT1G77080.4 38.462 169 94 3 1 168 1 160 2.06e-21 87.4
Msa1002070 AT5G65080.2 37.821 156 88 2 1 156 8 154 3.70e-21 87.0
Msa1002070 AT5G65070.1 36.095 169 98 3 1 168 1 160 3.73e-21 86.7
Msa1002070 AT5G65060.1 35.838 173 101 4 1 172 1 164 5.28e-21 86.3
Msa1002070 AT5G65070.4 37.748 151 84 3 1 150 1 142 5.93e-21 84.7
Msa1002070 AT1G65360.1 39.796 98 49 2 1 98 6 93 9.86e-20 83.6
Msa1002070 AT5G65060.2 34.659 176 88 4 1 172 1 153 2.05e-19 81.6
Msa1002070 AT1G01530.1 50.746 67 33 0 1 67 6 72 4.80e-19 82.0
Msa1002070 AT5G65070.2 55.714 70 30 1 1 69 1 70 5.33e-19 81.6
Msa1002070 AT5G65070.5 55.714 70 30 1 1 69 1 70 7.14e-19 80.9
Msa1002070 AT1G31140.2 34.507 142 91 1 1 140 1 142 8.54e-19 80.9
Msa1002070 AT1G77080.8 35.789 190 97 5 1 168 1 187 1.14e-18 80.9
Msa1002070 AT2G34440.1 41.975 81 46 1 1 81 1 80 3.07e-18 78.6
Msa1002070 AT1G77980.1 52.857 70 32 1 1 69 1 70 6.69e-18 80.5
Msa1002070 AT5G65070.3 34.673 199 92 8 1 168 1 192 9.74e-18 78.6
Msa1002070 AT5G60440.1 42.683 82 47 0 2 83 7 88 1.13e-17 79.3
Msa1002070 AT1G22130.1 52.857 70 32 1 1 69 1 70 1.13e-17 79.7
Msa1002070 AT4G36590.1 41.111 90 48 1 2 91 7 91 2.43e-17 77.8
Msa1002070 AT1G31140.1 34.507 142 89 2 1 140 1 140 3.98e-17 76.3
Msa1002070 AT1G77080.2 38.095 168 92 4 1 168 1 156 5.54e-17 75.5
Msa1002070 AT1G77080.12 38.608 158 85 4 1 158 1 146 5.59e-17 74.3
Msa1002070 AT2G24840.1 44.928 69 38 0 1 69 62 130 2.08e-16 75.5
Msa1002070 AT1G77950.3 50.000 70 34 1 1 69 1 70 5.68e-16 73.9
Msa1002070 AT1G77950.2 50.000 70 34 1 1 69 1 70 5.68e-16 73.9
Msa1002070 AT1G77950.1 50.000 70 34 1 1 69 1 70 5.68e-16 73.9
Msa1002070 AT1G77950.4 50.000 70 34 1 1 69 1 70 5.68e-16 73.9
Msa1002070 AT3G66656.1 42.254 71 41 0 1 71 1 71 3.08e-15 70.5
Msa1002070 AT4G37435.1 31.868 182 109 6 1 173 1 176 4.85e-15 70.1
Msa1002070 AT3G04100.1 29.927 137 82 3 2 133 14 141 7.88e-13 64.7
Msa1002070 AT1G18750.4 41.096 73 41 1 1 71 1 73 8.25e-13 66.2
Msa1002070 AT1G18750.1 41.096 73 41 1 1 71 1 73 9.90e-13 65.9
Msa1002070 AT1G18750.3 41.096 73 41 1 1 71 1 73 1.22e-12 65.9
Msa1002070 AT1G47760.1 33.065 124 69 3 1 124 1 110 1.71e-12 63.5
Msa1002070 AT1G72350.1 47.059 68 34 1 2 69 43 108 2.35e-12 63.5
Msa1002070 AT2G03060.3 49.057 53 27 0 1 53 1 53 1.04e-11 63.2
Msa1002070 AT2G03060.7 49.057 53 27 0 1 53 1 53 1.04e-11 63.2
Msa1002070 AT2G03060.1 49.057 53 27 0 1 53 1 53 1.04e-11 63.2
Msa1002070 AT2G03060.2 49.057 53 27 0 1 53 1 53 1.15e-11 62.8
Msa1002070 AT5G60910.2 33.929 112 71 2 62 172 1 110 3.84e-11 59.7
Msa1002070 AT1G69120.3 37.168 113 66 2 62 172 1 110 6.89e-11 59.3
Msa1002070 AT1G29962.1 39.706 68 41 0 2 69 8 75 7.71e-11 58.9

Find 26 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGACTATTTAAAATTAA+AGG 0.209855 6_4:-86779628 Msa1002070:CDS
GAATAGAGAATAAGATCAAT+AGG 0.384169 6_4:-86781560 Msa1002070:CDS
CCACAAGCTGGCAATTCATT+AGG 0.412131 6_4:-86779797 Msa1002070:CDS
ATTAGGACATAATGAATCTC+AGG 0.427391 6_4:-86779780 Msa1002070:intron
GGGAAGAGGAAGAGTAGTGT+TGG 0.444821 6_4:-86781586 Msa1002070:CDS
ACAAAATCATTGAAAGGTAT+CGG 0.498771 6_4:-86779838 Msa1002070:CDS
TTCCTTGCAGAATTTATACC+AGG 0.516754 6_4:-86779646 Msa1002070:intron
ACATTCTCAAAGAGAAGAAG+TGG 0.533258 6_4:-86781531 Msa1002070:CDS
TAACAAAACATTGGATCCCA+AGG 0.538783 6_4:-86778111 Msa1002070:CDS
ATAATTAGTAACATAAGAAG+AGG 0.545233 6_4:-86781633 None:intergenic
TGATCAGTTACCTCTGCTTG+CGG 0.557111 6_4:+86779586 None:intergenic
CCTAATGAATTGCCAGCTTG+TGG 0.558570 6_4:+86779797 None:intergenic
GGAGGAGGTTAACAAAACAT+TGG 0.566471 6_4:-86778120 Msa1002070:CDS
CGTTACAACAAGCCACAAGC+TGG 0.568796 6_4:-86779809 Msa1002070:CDS
TTGTCAGGTGCATCACTTGG+AGG 0.569728 6_4:-86778138 Msa1002070:intron
GAAGCTCATGGCACGAGCTG+AGG 0.572813 6_4:-86778269 Msa1002070:CDS
TCAGGTGCATCACTTGGAGG+AGG 0.575411 6_4:-86778135 Msa1002070:intron
ACGTTGTCAGGTGCATCACT+TGG 0.581480 6_4:-86778141 Msa1002070:intron
GTTGCTGACGAGCTTGTGTG+AGG 0.585890 6_4:+86778661 None:intergenic
TAATTAGTAACATAAGAAGA+GGG 0.587564 6_4:-86781632 None:intergenic
TTGCTGACGAGCTTGTGTGA+GGG 0.602754 6_4:+86778662 None:intergenic
TTTGCAGATGAAGAAGCTCA+TGG 0.604313 6_4:-86778281 Msa1002070:intron
GTATAAACAAAATCATTGAA+AGG 0.606354 6_4:-86779844 Msa1002070:CDS
ACATAGAACACAAAGCTCAA+AGG 0.615645 6_4:+86781494 None:intergenic
AGTCTCTCGACCGCAAGCAG+AGG 0.633842 6_4:-86779596 Msa1002070:intron
GAAAGAATTGCAAAGACTCG+AGG 0.646936 6_4:-86778700 Msa1002070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr6_4:86779394-86779413 Msa1002070:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr6_4:86779395-86779414 Msa1002070:intron 0.0%
!! TATATATATATATATATATT+GGG + chr6_4:86779725-86779744 None:intergenic 0.0%
!! ATATATATATATATATATAT+TGG + chr6_4:86779395-86779414 None:intergenic 0.0%
!! AAAAATAAAAAATAATAATT+AGG - chr6_4:86780227-86780246 Msa1002070:intron 0.0%
!!! TTAAATTTTTTTTTTAGAAG+AGG + chr6_4:86778491-86778510 None:intergenic 10.0%
!!! TCCTATATTATTATTATTTT+TGG - chr6_4:86779949-86779968 Msa1002070:intron 10.0%
!! ACCAAAAATAATAATAATAT+AGG + chr6_4:86779953-86779972 None:intergenic 10.0%
!!! TCTTTTAGAAAATTAATAAT+AGG + chr6_4:86780322-86780341 None:intergenic 10.0%
!!! AAAATGATTTTTTTTTTTTG+TGG + chr6_4:86780786-86780805 None:intergenic 10.0%
!! AAAATGAGAAATTAAAGAAA+AGG + chr6_4:86778285-86778304 None:intergenic 15.0%
!! ATAAGAAATTTAGATTTAGA+GGG + chr6_4:86778398-86778417 None:intergenic 15.0%
!! TATAAGAAATTTAGATTTAG+AGG + chr6_4:86778399-86778418 None:intergenic 15.0%
!! TCTAAATCTAAATTTCTTAT+AGG - chr6_4:86778398-86778417 Msa1002070:intron 15.0%
!! AAAAAAAATTTAAGCCATTA+TGG - chr6_4:86778498-86778517 Msa1002070:intron 15.0%
!!! AATGATATGAATTTAGATTT+TGG + chr6_4:86779339-86779358 None:intergenic 15.0%
!! AAATTAATAATTGCGAAAAA+TGG - chr6_4:86780192-86780211 Msa1002070:intron 15.0%
!! TAATGACAAAATTATTTCAA+AGG - chr6_4:86780863-86780882 Msa1002070:intron 15.0%
!! AATGACAAAATTATTTCAAA+GGG - chr6_4:86780864-86780883 Msa1002070:intron 15.0%
!!! TTTTGAAAAAGCAAATAAAT+AGG - chr6_4:86781266-86781285 Msa1002070:intron 15.0%
!!! AGTATGCAATTATTTTTAAA+AGG - chr6_4:86781439-86781458 Msa1002070:CDS 15.0%
!!! TATTTTTCCTCTCAAAATAT+AGG - chr6_4:86778312-86778331 Msa1002070:intron 20.0%
!! ATAAAGTAGCACTAAATTAA+GGG + chr6_4:86778346-86778365 None:intergenic 20.0%
!!! TTTTAAAAGCAATGATTTGT+TGG - chr6_4:86778781-86778800 Msa1002070:intron 20.0%
!!! TTTAAAAGCAATGATTTGTT+GGG - chr6_4:86778782-86778801 Msa1002070:intron 20.0%
!!! ATTTTGGAGTTATTTACTTT+GGG + chr6_4:86779323-86779342 None:intergenic 20.0%
!! GTATAAACAAAATCATTGAA+AGG - chr6_4:86779828-86779847 Msa1002070:CDS 20.0%
!! TTAATTTCATTCCAATTTCA+GGG + chr6_4:86780179-86780198 None:intergenic 20.0%
!! ATTAATTTCATTCCAATTTC+AGG + chr6_4:86780180-86780199 None:intergenic 20.0%
!! TAAGCATATGTTTAAAAAGT+AGG + chr6_4:86780351-86780370 None:intergenic 20.0%
!! ATATCATTTGAACATATTAG+AGG + chr6_4:86780564-86780583 None:intergenic 20.0%
!! TTTCATTTCAATCGAAAATA+AGG - chr6_4:86780650-86780669 Msa1002070:intron 20.0%
!! TTCATTTCAATCGAAAATAA+GGG - chr6_4:86780651-86780670 Msa1002070:intron 20.0%
!!! TTTTTTTTTTTTGTGGTAGT+CGG + chr6_4:86780779-86780798 None:intergenic 20.0%
!!! ATTATACTTTGATTTTTGGA+AGG + chr6_4:86780847-86780866 None:intergenic 20.0%
!!! TGTCATTATACTTTGATTTT+TGG + chr6_4:86780851-86780870 None:intergenic 20.0%
!!! TTATTTTTTGGTTGTTTTGA+AGG - chr6_4:86780914-86780933 Msa1002070:intron 20.0%
!! GATGTATAATATGTATATGA+TGG + chr6_4:86781061-86781080 None:intergenic 20.0%
! GAATAGAGAATAAGATCAAT+AGG - chr6_4:86778112-86778131 Msa1002070:CDS 25.0%
!!! TATAGATCCTATATTTTGAG+AGG + chr6_4:86778322-86778341 None:intergenic 25.0%
! CATAAAGTAGCACTAAATTA+AGG + chr6_4:86778347-86778366 None:intergenic 25.0%
!!! CTTAATTTAGTGCTACTTTA+TGG - chr6_4:86778345-86778364 Msa1002070:intron 25.0%
!! TATAAGATCCCTTTTATAGT+TGG + chr6_4:86778438-86778457 None:intergenic 25.0%
! AACTATAAAAGGGATCTTAT+AGG - chr6_4:86778437-86778456 Msa1002070:intron 25.0%
! GCATAGATAATCAATCAATT+AGG - chr6_4:86778459-86778478 Msa1002070:intron 25.0%
!!! TATGTGTCATTTTACTGAAT+TGG + chr6_4:86778686-86778705 None:intergenic 25.0%
!!! TTAAAAGCAATGATTTGTTG+GGG - chr6_4:86778783-86778802 Msa1002070:intron 25.0%
! AACGTTAAATATGCAAGATA+GGG + chr6_4:86779255-86779274 None:intergenic 25.0%
! AAACGTTAAATATGCAAGAT+AGG + chr6_4:86779256-86779275 None:intergenic 25.0%
!!! GATTTTGGAGTTATTTACTT+TGG + chr6_4:86779324-86779343 None:intergenic 25.0%
! GCAAGTAAATAACTAAAAAG+TGG + chr6_4:86779499-86779518 None:intergenic 25.0%
! GCAAGTAAATAACTAAAAAG+TGG + chr6_4:86779499-86779518 None:intergenic 25.0%
!! ACAAAATCATTGAAAGGTAT+CGG - chr6_4:86779834-86779853 Msa1002070:CDS 25.0%
! ATTAGTCAAGAAGGAAAAAT+TGG + chr6_4:86779922-86779941 None:intergenic 25.0%
! GAACAATAAATTAGTCAAGA+AGG + chr6_4:86779931-86779950 None:intergenic 25.0%
!!! CCTTTAATTTTAAATAGTCC+TGG + chr6_4:86780047-86780066 None:intergenic 25.0%
!! CCAGGACTATTTAAAATTAA+AGG - chr6_4:86780044-86780063 Msa1002070:intron 25.0%
! CGTTAATAAAACAATGATGA+TGG + chr6_4:86780374-86780393 None:intergenic 25.0%
! GACAATGCATAATATATGTA+AGG - chr6_4:86780738-86780757 Msa1002070:intron 25.0%
! TGCATAATATATGTAAGGTT+CGG - chr6_4:86780743-86780762 Msa1002070:intron 25.0%
!!! TTTTTTTTTTTGTGGTAGTC+GGG + chr6_4:86780778-86780797 None:intergenic 25.0%
!!! ATTTTGAAAGGAAAAACCTT+GGG + chr6_4:86781580-86781599 None:intergenic 25.0%
!!! AATTTTGAAAGGAAAAACCT+TGG + chr6_4:86781581-86781600 None:intergenic 25.0%
!! CTAGTAACATGAATTTTGAA+AGG + chr6_4:86781592-86781611 None:intergenic 25.0%
TATATTGAAAAAGCTTGCCA+CGG + chr6_4:86778236-86778255 None:intergenic 30.0%
TACTTTATGGTGCAAAATAC+AGG - chr6_4:86778358-86778377 Msa1002070:intron 30.0%
GATTTAGAGGGAGTAAAAAA+GGG + chr6_4:86778386-86778405 None:intergenic 30.0%
AGATTTAGAGGGAGTAAAAA+AGG + chr6_4:86778387-86778406 None:intergenic 30.0%
ACCATGAACCAACTATAAAA+GGG - chr6_4:86778427-86778446 Msa1002070:intron 30.0%
AGAAGAAAGAAGATCCATAA+TGG + chr6_4:86778515-86778534 None:intergenic 30.0%
AATTGCAGAATCATCTTACA+TGG - chr6_4:86778564-86778583 Msa1002070:intron 30.0%
! TAAAGTGTAGTCATGTTTTC+TGG - chr6_4:86778612-86778631 Msa1002070:intron 30.0%
!!! ATGTTTTCTGGAATTTGTGA+GGG - chr6_4:86778624-86778643 Msa1002070:intron 30.0%
TGACACATACATACAACAAA+TGG - chr6_4:86778697-86778716 Msa1002070:CDS 30.0%
! ATATATCTGATGATGCCTTA+AGG + chr6_4:86778932-86778951 None:intergenic 30.0%
! TTAAGGCATCATCAGATATA+TGG - chr6_4:86778931-86778950 Msa1002070:intron 30.0%
! TAAGGCATCATCAGATATAT+GGG - chr6_4:86778932-86778951 Msa1002070:intron 30.0%
!!! ACCTGATGTTTTAAGGTTTT+GGG + chr6_4:86779223-86779242 None:intergenic 30.0%
!!! TACCTGATGTTTTAAGGTTT+TGG + chr6_4:86779224-86779243 None:intergenic 30.0%
ACCTTAAAACATCAGGTATA+TGG - chr6_4:86779226-86779245 Msa1002070:intron 30.0%
CCTTAAAACATCAGGTATAT+GGG - chr6_4:86779227-86779246 Msa1002070:intron 30.0%
ACGTTAAATATGCAAGATAG+GGG + chr6_4:86779254-86779273 None:intergenic 30.0%
TATTTACTTTGGGTATGAAG+TGG + chr6_4:86779313-86779332 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + chr6_4:86779590-86779609 None:intergenic 30.0%
TTATAGCAACATACACCTTA+GGG - chr6_4:86779613-86779632 Msa1002070:CDS 30.0%
!!! ACACCAACTAGTTTTTATGT+GGG + chr6_4:86779680-86779699 None:intergenic 30.0%
ATTAGGACATAATGAATCTC+AGG - chr6_4:86779892-86779911 Msa1002070:intron 30.0%
!!! CCATTTTTTGACGAAGTAAA+AGG + chr6_4:86780127-86780146 None:intergenic 30.0%
! CCTTTTACTTCGTCAAAAAA+TGG - chr6_4:86780124-86780143 Msa1002070:intron 30.0%
! TTTTATAGTCACCCTGAAAT+TGG - chr6_4:86780165-86780184 Msa1002070:intron 30.0%
TTGAACAAAATGATTTGACG+AGG + chr6_4:86780266-86780285 None:intergenic 30.0%
ATATTAGAGGAGTAGTTTAG+TGG + chr6_4:86780551-86780570 None:intergenic 30.0%
ACACACACACATATTAGAAA+AGG - chr6_4:86780618-86780637 Msa1002070:intron 30.0%
GCATAATATATGTAAGGTTC+GGG - chr6_4:86780744-86780763 Msa1002070:intron 30.0%
CATAATATATGTAAGGTTCG+GGG - chr6_4:86780745-86780764 Msa1002070:intron 30.0%
!!! TTTTTTTTTTGTGGTAGTCG+GGG + chr6_4:86780777-86780796 None:intergenic 30.0%
!!! TTGTTTTGAAGGCATTTTCA+TGG - chr6_4:86780925-86780944 Msa1002070:intron 30.0%
!!! TGTTTTGAAGGCATTTTCAT+GGG - chr6_4:86780926-86780945 Msa1002070:intron 30.0%
ATGATGGTACTTATGTTTAG+TGG + chr6_4:86781045-86781064 None:intergenic 30.0%
AGAGAGAGAGAGAAGAAAAA+TGG - chr6_4:86778065-86778084 Msa1002070:CDS 35.0%
GAGAGAGAGAGAAGAAAAAT+GGG - chr6_4:86778066-86778085 Msa1002070:CDS 35.0%
ACATTCTCAAAGAGAAGAAG+TGG - chr6_4:86778141-86778160 Msa1002070:intron 35.0%
ACATAGAACACAAAGCTCAA+AGG + chr6_4:86778181-86778200 None:intergenic 35.0%
!!! CTTATCATTTTTTCAAGCCG+TGG - chr6_4:86778216-86778235 Msa1002070:intron 35.0%
CACCATGAACCAACTATAAA+AGG - chr6_4:86778426-86778445 Msa1002070:intron 35.0%
!! TCCCTTTTATAGTTGGTTCA+TGG + chr6_4:86778431-86778450 None:intergenic 35.0%
ATGGATCTTCTTTCTTCTCA+TGG - chr6_4:86778517-86778536 Msa1002070:intron 35.0%
!!! CATGTTTTCTGGAATTTGTG+AGG - chr6_4:86778623-86778642 Msa1002070:intron 35.0%
!! TGATGATGCCTTAAGGTTTT+GGG + chr6_4:86778925-86778944 None:intergenic 35.0%
GTGTTGTCTAAGTCTCTTAT+GGG + chr6_4:86779193-86779212 None:intergenic 35.0%
TGTGTTGTCTAAGTCTCTTA+TGG + chr6_4:86779194-86779213 None:intergenic 35.0%
ACCCAAAACCTTAAAACATC+AGG - chr6_4:86779219-86779238 Msa1002070:intron 35.0%
! CCCATATACCTGATGTTTTA+AGG + chr6_4:86779230-86779249 None:intergenic 35.0%
GATTATATCCCAAGTCGAAT+AGG + chr6_4:86779287-86779306 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr6_4:86779436-86779455 Msa1002070:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr6_4:86779525-86779544 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG - chr6_4:86779463-86779482 Msa1002070:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG - chr6_4:86779464-86779483 Msa1002070:intron 35.0%
AAGTGGTTAATTACACCCTA+AGG + chr6_4:86779482-86779501 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr6_4:86779525-86779544 Msa1002070:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr6_4:86779436-86779455 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr6_4:86779567-86779586 None:intergenic 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - chr6_4:86779586-86779605 Msa1002070:intron 35.0%
CACCTTCTAACAAAAACAAG+TGG + chr6_4:86779591-86779610 None:intergenic 35.0%
GTTATAGCAACATACACCTT+AGG - chr6_4:86779612-86779631 Msa1002070:CDS 35.0%
AAGTGGTTAAATACACCCTA+AGG + chr6_4:86779631-86779650 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+TGG - chr6_4:86779525-86779544 Msa1002070:intron 35.0%
!!! CACACCAACTAGTTTTTATG+TGG + chr6_4:86779681-86779700 None:intergenic 35.0%
TTCCTTGCAGAATTTATACC+AGG - chr6_4:86780026-86780045 Msa1002070:intron 35.0%
ATCTTCTTCAGCTTAAGTAG+AGG + chr6_4:86780506-86780525 None:intergenic 35.0%
!!! GTTTTGAAGGCATTTTCATG+GGG - chr6_4:86780927-86780946 Msa1002070:intron 35.0%
AAGGAAAATTAATGACCAGC+AGG + chr6_4:86781503-86781522 None:intergenic 35.0%
! TGCTGGTCATTAATTTTCCT+TGG - chr6_4:86781502-86781521 Msa1002070:CDS 35.0%
TAACAAAACATTGGATCCCA+AGG - chr6_4:86781561-86781580 Msa1002070:CDS 35.0%
GAGAGAAGAAAAATGGGAAG+AGG - chr6_4:86778072-86778091 Msa1002070:CDS 40.0%
ACATGGTTGTGAATGTGAGT+TGG - chr6_4:86778581-86778600 Msa1002070:intron 40.0%
CATGGTTGTGAATGTGAGTT+GGG - chr6_4:86778582-86778601 Msa1002070:intron 40.0%
! GTGGTGTCTAAGTCTTTTAG+GGG + chr6_4:86778895-86778914 None:intergenic 40.0%
! CGTGGTGTCTAAGTCTTTTA+GGG + chr6_4:86778896-86778915 None:intergenic 40.0%
! ACGTGGTGTCTAAGTCTTTT+AGG + chr6_4:86778897-86778916 None:intergenic 40.0%
!! CTGATGATGCCTTAAGGTTT+TGG + chr6_4:86778926-86778945 None:intergenic 40.0%
GCATCATCAGATATATGGGT+GGG - chr6_4:86778936-86778955 Msa1002070:intron 40.0%
TGTGGATGATTCACACTTGA+GGG + chr6_4:86779046-86779065 None:intergenic 40.0%
ATGTGGATGATTCACACTTG+AGG + chr6_4:86779047-86779066 None:intergenic 40.0%
TCTAAGTCTCTTATGGGTCT+TGG + chr6_4:86779187-86779206 None:intergenic 40.0%
TATCCCAAGTCGAATAGGAA+TGG + chr6_4:86779282-86779301 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr6_4:86779435-86779454 Msa1002070:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + chr6_4:86779524-86779543 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - chr6_4:86779524-86779543 Msa1002070:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr6_4:86779435-86779454 None:intergenic 40.0%
GTGTTCTAGCAAATGCCTAT+AGG - chr6_4:86779549-86779568 Msa1002070:intron 40.0%
GTCCTGGTATAAATTCTGCA+AGG + chr6_4:86780031-86780050 None:intergenic 40.0%
! TTAGTGGTTTGGGAATGAGA+TGG + chr6_4:86780535-86780554 None:intergenic 40.0%
GAGGAGTAGTTTAGTGGTTT+GGG + chr6_4:86780545-86780564 None:intergenic 40.0%
AGAGGAGTAGTTTAGTGGTT+TGG + chr6_4:86780546-86780565 None:intergenic 40.0%
! TGAGCTAAGCTCAGTTTGTT+GGG - chr6_4:86780716-86780735 Msa1002070:intron 40.0%
GAAAGAATTGCAAAGACTCG+AGG - chr6_4:86780972-86780991 Msa1002070:intron 40.0%
TTTGCAGATGAAGAAGCTCA+TGG - chr6_4:86781391-86781410 Msa1002070:intron 40.0%
GTCGAGAAACATGTGACATA+AGG + chr6_4:86781481-86781500 None:intergenic 40.0%
GGAGGAGGTTAACAAAACAT+TGG - chr6_4:86781552-86781571 Msa1002070:CDS 40.0%
!! TCTAAGTCTTTTAGGGGTCC+TGG + chr6_4:86778889-86778908 None:intergenic 45.0%
!!! TGATGCCTTAAGGTTTTGGG+TGG + chr6_4:86778922-86778941 None:intergenic 45.0%
GGCATCATCAGATATATGGG+TGG - chr6_4:86778935-86778954 Msa1002070:intron 45.0%
! GATTATGTCCCACATCGACT+AGG + chr6_4:86778996-86779015 None:intergenic 45.0%
TGGATGATTCACACTTGAGG+GGG + chr6_4:86779044-86779063 None:intergenic 45.0%
GTGGATGATTCACACTTGAG+GGG + chr6_4:86779045-86779064 None:intergenic 45.0%
!! TGTGGATTAGGCTAGTGATG+TGG + chr6_4:86779064-86779083 None:intergenic 45.0%
GTGGGATCTTAGTGTGGATT+AGG + chr6_4:86779076-86779095 None:intergenic 45.0%
! AGGGCTTTGATACCAGTTGT+CGG - chr6_4:86779121-86779140 Msa1002070:intron 45.0%
TCCTCCATTCCTATTCGACT+TGG - chr6_4:86779275-86779294 Msa1002070:intron 45.0%
CCTCCATTCCTATTCGACTT+GGG - chr6_4:86779276-86779295 Msa1002070:intron 45.0%
CCTAATGAATTGCCAGCTTG+TGG + chr6_4:86779878-86779897 None:intergenic 45.0%
CCACAAGCTGGCAATTCATT+AGG - chr6_4:86779875-86779894 Msa1002070:intron 45.0%
TGATCAGTTACCTCTGCTTG+CGG + chr6_4:86780089-86780108 None:intergenic 45.0%
GTGAGCTAAGCTCAGTTTGT+TGG - chr6_4:86780715-86780734 Msa1002070:intron 45.0%
!! TATATATATATATATATATG+GGG - chr6_4:86779402-86779421 Msa1002070:intron 5.0%
!! ATATATATATATATATATTG+GGG + chr6_4:86779714-86779733 None:intergenic 5.0%
!!! TATTTTTAAAAGATAATATA+GGG + chr6_4:86779980-86779999 None:intergenic 5.0%
!!! TTATTTTTAAAAGATAATAT+AGG + chr6_4:86779981-86780000 None:intergenic 5.0%
!!! TAAAAAAAAAAAAAGTTTTA+AGG + chr6_4:86780415-86780434 None:intergenic 5.0%
!!! TTGTATATTTATTTATTTTT+TGG - chr6_4:86780902-86780921 Msa1002070:intron 5.0%
!! TGAAAAATAATAAAATTTAA+TGG + chr6_4:86781131-86781150 None:intergenic 5.0%
GGGAAGAGGAAGAGTAGTGT+TGG - chr6_4:86778086-86778105 Msa1002070:CDS 50.0%
CCAACAAACTTCGCCACTTC+CGG + chr6_4:86778820-86778839 None:intergenic 50.0%
! CGGAAGTGGCGAAGTTTGTT+GGG - chr6_4:86778818-86778837 Msa1002070:intron 50.0%
!! GGAAGTGGCGAAGTTTGTTG+GGG - chr6_4:86778819-86778838 Msa1002070:intron 50.0%
!!! TAAGGTTTTGGGTGGAGACG+TGG + chr6_4:86778914-86778933 None:intergenic 50.0%
CGTCTCCACCCAAAACCTTA+AGG - chr6_4:86778914-86778933 Msa1002070:intron 50.0%
TCCTCCATTCCTAGTCGATG+TGG - chr6_4:86778984-86779003 Msa1002070:intron 50.0%
CCTCCATTCCTAGTCGATGT+GGG - chr6_4:86778985-86779004 Msa1002070:intron 50.0%
! TGTCCCACATCGACTAGGAA+TGG + chr6_4:86778991-86779010 None:intergenic 50.0%
CACTTGAGGGGGACTTTGTT+GGG + chr6_4:86779033-86779052 None:intergenic 50.0%
ACACTTGAGGGGGACTTTGT+TGG + chr6_4:86779034-86779053 None:intergenic 50.0%
TCCTCCATTGAGCCTAACCA+GGG - chr6_4:86779102-86779121 Msa1002070:intron 50.0%
AAAGCCCTGGTTAGGCTCAA+TGG + chr6_4:86779109-86779128 None:intergenic 50.0%
CTGGTATCAAAGCCCTGGTT+AGG + chr6_4:86779117-86779136 None:intergenic 50.0%
GACAACTGGTATCAAAGCCC+TGG + chr6_4:86779122-86779141 None:intergenic 50.0%
! GGGCTTTGATACCAGTTGTC+GGG - chr6_4:86779122-86779141 Msa1002070:intron 50.0%
! GGCTTTGATACCAGTTGTCG+GGG - chr6_4:86779123-86779142 Msa1002070:intron 50.0%
CCCAAGTCGAATAGGAATGG+AGG + chr6_4:86779279-86779298 None:intergenic 50.0%
CGTTACAACAAGCCACAAGC+TGG - chr6_4:86779863-86779882 Msa1002070:intron 50.0%
TTGCTGACGAGCTTGTGTGA+GGG + chr6_4:86781013-86781032 None:intergenic 50.0%
TCACATGTTTCTCGACCTGC+TGG - chr6_4:86781485-86781504 Msa1002070:CDS 50.0%
CCTGACAACGTATACAGCCA+AGG + chr6_4:86781522-86781541 None:intergenic 50.0%
CCTTGGCTGTATACGTTGTC+AGG - chr6_4:86781519-86781538 Msa1002070:CDS 50.0%
ACGTTGTCAGGTGCATCACT+TGG - chr6_4:86781531-86781550 Msa1002070:CDS 50.0%
TTGTCAGGTGCATCACTTGG+AGG - chr6_4:86781534-86781553 Msa1002070:CDS 50.0%
CCGGAAGTGGCGAAGTTTGT+TGG - chr6_4:86778817-86778836 Msa1002070:intron 55.0%
! CCCACATCGACTAGGAATGG+AGG + chr6_4:86778988-86779007 None:intergenic 55.0%
GCGAGAGTGGGATCTTAGTG+TGG + chr6_4:86779082-86779101 None:intergenic 55.0%
CTCAATGGAGGAGCGAGAGT+GGG + chr6_4:86779094-86779113 None:intergenic 55.0%
CTCCTCCATTGAGCCTAACC+AGG - chr6_4:86779101-86779120 Msa1002070:intron 55.0%
ATACCAGTTGTCGGGGAGTC+TGG - chr6_4:86779130-86779149 Msa1002070:intron 55.0%
TACCAGTTGTCGGGGAGTCT+GGG - chr6_4:86779131-86779150 Msa1002070:intron 55.0%
GTTGCTGACGAGCTTGTGTG+AGG + chr6_4:86781014-86781033 None:intergenic 55.0%
TCAGGTGCATCACTTGGAGG+AGG - chr6_4:86781537-86781556 Msa1002070:CDS 55.0%
CATCGCCACTTCGCCACTTC+CGG + chr6_4:86778856-86778875 None:intergenic 60.0%
GGAAGTGGCGAAGTGGCGAT+GGG - chr6_4:86778855-86778874 Msa1002070:intron 60.0%
!! TGGCGATGGGCTAAACGTCC+AGG - chr6_4:86778868-86778887 Msa1002070:intron 60.0%
GCTCAATGGAGGAGCGAGAG+TGG + chr6_4:86779095-86779114 None:intergenic 60.0%
GCCCTGGTTAGGCTCAATGG+AGG + chr6_4:86779106-86779125 None:intergenic 60.0%
ACCAGTTGTCGGGGAGTCTG+GGG - chr6_4:86779132-86779151 Msa1002070:intron 60.0%
AGTCTCTCGACCGCAAGCAG+AGG - chr6_4:86780076-86780095 Msa1002070:intron 60.0%
GAAGCTCATGGCACGAGCTG+AGG - chr6_4:86781403-86781422 Msa1002070:intron 60.0%
TGTTGGGGAGTCCAGAGCGC+CGG - chr6_4:86778798-86778817 Msa1002070:intron 65.0%
TGTTGGGGAGTCCAGAGCGC+CGG - chr6_4:86778798-86778817 Msa1002070:intron 65.0%
CGGAAGTGGCGAAGTGGCGA+TGG - chr6_4:86778854-86778873 Msa1002070:intron 65.0%
TCCCCAGACTCCCCGACAAC+TGG + chr6_4:86779136-86779155 None:intergenic 65.0%
!! GGGAGCGTCAGGAGCAGCAA+TGG - chr6_4:86779152-86779171 Msa1002070:intron 65.0%
!! GGAGTCCAGAGCGCCGGAAG+TGG - chr6_4:86778804-86778823 Msa1002070:intron 70.0%
CTTCGCCACTTCCGGCGCTC+TGG + chr6_4:86778812-86778831 None:intergenic 70.0%
!! GGAGTCCAGAGCGCCGGAAG+TGG - chr6_4:86778804-86778823 Msa1002070:intron 70.0%
CTTCGCCACTTCCGGCGCTC+TGG + chr6_4:86778812-86778831 None:intergenic 70.0%
!! GAGCGCCGGAAGTGGCGAAG+TGG - chr6_4:86778812-86778831 Msa1002070:intron 70.0%
!! CGGGGAGTCTGGGGAGCGTC+AGG - chr6_4:86779141-86779160 Msa1002070:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 86778046 86781648 86778046 ID=Msa1002070;Name=Msa1002070
chr6_4 mRNA 86778046 86781648 86778046 ID=Msa1002070-mRNA-1;Parent=Msa1002070;Name=Msa1002070-mRNA-1;_AED=0.16;_eAED=0.16;_QI=38|0.2|0.16|1|1|1|6|0|192
chr6_4 exon 86778046 86778153 86778046 ID=Msa1002070-mRNA-1:exon:17039;Parent=Msa1002070-mRNA-1
chr6_4 exon 86778255 86778296 86778255 ID=Msa1002070-mRNA-1:exon:17038;Parent=Msa1002070-mRNA-1
chr6_4 exon 86778659 86778758 86778659 ID=Msa1002070-mRNA-1:exon:17037;Parent=Msa1002070-mRNA-1
chr6_4 exon 86779597 86779658 86779597 ID=Msa1002070-mRNA-1:exon:17036;Parent=Msa1002070-mRNA-1
chr6_4 exon 86779781 86779865 86779781 ID=Msa1002070-mRNA-1:exon:17035;Parent=Msa1002070-mRNA-1
chr6_4 exon 86781429 86781648 86781429 ID=Msa1002070-mRNA-1:exon:17034;Parent=Msa1002070-mRNA-1
chr6_4 five_prime_UTR 86781611 86781648 86781611 ID=Msa1002070-mRNA-1:five_prime_utr;Parent=Msa1002070-mRNA-1
chr6_4 CDS 86781429 86781610 86781429 ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4 CDS 86779781 86779865 86779781 ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4 CDS 86779597 86779658 86779597 ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4 CDS 86778659 86778758 86778659 ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4 CDS 86778255 86778296 86778255 ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4 CDS 86778046 86778153 86778046 ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
Gene Sequence

>Msa1002070

ATGGGAAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTTCTATGTGATGCTGAAGTTGCACTTATCATTTTTTCAAGCCGTGGCAAGCTTTTTCAATATAGTAGCACTGATATAAACAAAATCATTGAAAGGTATCGGCAATGTCGTTACAACAAGCCACAAGCTGGCAATTCATTAGGACATAATGAATCTCAGAATTTATACCAGGACTATTTAAAATTAAAGGCAAAATATGAGTCTCTCGACCGCAAGCAGAGGCATTTTCATGGGGAAGAGCTTGAGCAACTTAGCATGAAAGAATTGCAAAGACTCGAGGAACAGCTAGACTTAACCCTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCATGGCACGAGCTGAGGAATTACGAGAAAAAGTGCATCACTTGGAGGAGGTTAACAAAACATTGGATCCCAAGGTTTTTCCTTTCAAAATTCATGTTACTAGCTATGCTTTTCATCTATTCAGAATTTGCTCTATCTAA
Protein sequence

>Msa1002070

MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYNKPQAGNSLGHNESQNLYQDYLKLKAKYESLDRKQRHFHGEELEQLSMKELQRLEEQLDLTLTQARQQQMKKLMARAEELREKVHHLEEVNKTLDPKVFPFKIHVTSYAFHLFRICSI*