AlfalfaGEDB | Msa1002070

M. sativa cultivar zhongmu-4 / Msa1002070

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002070	RHN51908.1	97.927	193	3	1	1	192	1	193	7.23e-135	385

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002070	sp\|Q6EU39\|MADS6_ORYSJ	59.884	172	67	1	1	172	1	170	1.19e-63	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002070	A0A396HH37	97.927	193	3	1	1	192	1	193	3.45e-135	385

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TFs/TRs:

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Gene ID	Type	Classification
Msa1002070	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0957380	Msa1002070	0.846822	1.706078e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002070	MtrunA17_Chr6g0474371	97.927	193	3	1	1	192	1	193	6.65e-139	385
Msa1002070	MtrunA17_Chr1g0204111	68.605	172	54	0	1	172	17	188	2.94e-79	236
Msa1002070	MtrunA17_Chr8g0351051	58.721	172	70	1	1	172	1	171	1.98e-61	191
Msa1002070	MtrunA17_Chr6g0455511	51.087	184	77	3	1	178	1	177	2.71e-53	170
Msa1002070	MtrunA17_Chr3g0122251	51.087	184	81	3	1	178	1	181	4.64e-53	169
Msa1002070	MtrunA17_Chr7g0220111	52.023	173	80	2	1	172	1	171	2.72e-52	167
Msa1002070	MtrunA17_Chr5g0420091	47.208	197	90	4	1	185	1	195	7.58e-52	166
Msa1002070	MtrunA17_Chr4g0061691	55.621	169	73	2	1	168	1	168	1.11e-51	166
Msa1002070	MtrunA17_Chr4g0061671	47.399	173	87	3	1	172	1	170	1.10e-45	149
Msa1002070	MtrunA17_Chr8g0366231	52.326	172	74	4	1	168	1	168	3.35e-45	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002070	AT2G45650.1	52.128	188	83	3	1	188	1	181	7.25e-56	177
Msa1002070	AT5G15800.1	52.601	173	80	2	1	172	1	172	1.78e-52	169
Msa1002070	AT3G02310.2	52.326	172	80	2	1	171	1	171	1.81e-52	167
Msa1002070	AT5G15800.2	52.601	173	80	2	1	172	1	172	2.71e-52	168
Msa1002070	AT1G24260.1	53.757	173	72	3	1	168	1	170	3.31e-52	168
Msa1002070	AT3G02310.1	52.023	173	81	2	1	172	1	172	5.95e-52	167
Msa1002070	AT3G61120.1	52.976	168	76	2	1	168	1	165	4.25e-51	165
Msa1002070	AT1G24260.2	53.179	173	74	3	1	168	1	171	4.70e-51	165
Msa1002070	AT2G03710.3	48.276	174	86	2	1	172	1	172	6.81e-49	157
Msa1002070	AT1G24260.3	50.286	175	80	3	1	170	1	173	1.93e-48	158

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Find 26 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAATCATTGAAAGGTAT+CGG	0.498771	6_4:-86779838	Msa1002070:CDS
ACATAGAACACAAAGCTCAA+AGG	0.615645	6_4:+86781494	None:intergenic
ACATTCTCAAAGAGAAGAAG+TGG	0.533258	6_4:-86781531	Msa1002070:CDS
ACGTTGTCAGGTGCATCACT+TGG	0.581480	6_4:-86778141	Msa1002070:intron
AGTCTCTCGACCGCAAGCAG+AGG	0.633842	6_4:-86779596	Msa1002070:intron
ATAATTAGTAACATAAGAAG+AGG	0.545233	6_4:-86781633	None:intergenic
ATTAGGACATAATGAATCTC+AGG	0.427391	6_4:-86779780	Msa1002070:intron
CCACAAGCTGGCAATTCATT+AGG	0.412131	6_4:-86779797	Msa1002070:CDS
CCAGGACTATTTAAAATTAA+AGG	0.209855	6_4:-86779628	Msa1002070:CDS
CCTAATGAATTGCCAGCTTG+TGG	0.558570	6_4:+86779797	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATTGAAAAAGCTTGCCA+CGG	+	chr6_4:86778236-86778255	None:intergenic	30.0%
TACTTTATGGTGCAAAATAC+AGG	-	chr6_4:86778358-86778377	Msa1002070:intron	30.0%
GATTTAGAGGGAGTAAAAAA+GGG	+	chr6_4:86778386-86778405	None:intergenic	30.0%
AGATTTAGAGGGAGTAAAAA+AGG	+	chr6_4:86778387-86778406	None:intergenic	30.0%
ACCATGAACCAACTATAAAA+GGG	-	chr6_4:86778427-86778446	Msa1002070:intron	30.0%
AGAAGAAAGAAGATCCATAA+TGG	+	chr6_4:86778515-86778534	None:intergenic	30.0%
AATTGCAGAATCATCTTACA+TGG	-	chr6_4:86778564-86778583	Msa1002070:intron	30.0%
TGACACATACATACAACAAA+TGG	-	chr6_4:86778697-86778716	Msa1002070:CDS	30.0%
ACCTTAAAACATCAGGTATA+TGG	-	chr6_4:86779226-86779245	Msa1002070:intron	30.0%
CCTTAAAACATCAGGTATAT+GGG	-	chr6_4:86779227-86779246	Msa1002070:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	86778046	86781648	86778046	ID=Msa1002070;Name=Msa1002070
chr6_4	mRNA	86778046	86781648	86778046	ID=Msa1002070-mRNA-1;Parent=Msa1002070;Name=Msa1002070-mRNA-1;_AED=0.16;_eAED=0.16;_QI=38\|0.2\|0.16\|1\|1\|1\|6\|0\|192
chr6_4	exon	86778046	86778153	86778046	ID=Msa1002070-mRNA-1:exon:17039;Parent=Msa1002070-mRNA-1
chr6_4	exon	86778255	86778296	86778255	ID=Msa1002070-mRNA-1:exon:17038;Parent=Msa1002070-mRNA-1
chr6_4	exon	86778659	86778758	86778659	ID=Msa1002070-mRNA-1:exon:17037;Parent=Msa1002070-mRNA-1
chr6_4	exon	86779597	86779658	86779597	ID=Msa1002070-mRNA-1:exon:17036;Parent=Msa1002070-mRNA-1
chr6_4	exon	86779781	86779865	86779781	ID=Msa1002070-mRNA-1:exon:17035;Parent=Msa1002070-mRNA-1
chr6_4	exon	86781429	86781648	86781429	ID=Msa1002070-mRNA-1:exon:17034;Parent=Msa1002070-mRNA-1
chr6_4	five_prime_UTR	86781611	86781648	86781611	ID=Msa1002070-mRNA-1:five_prime_utr;Parent=Msa1002070-mRNA-1
chr6_4	CDS	86781429	86781610	86781429	ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4	CDS	86779781	86779865	86779781	ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4	CDS	86779597	86779658	86779597	ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4	CDS	86778659	86778758	86778659	ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4	CDS	86778255	86778296	86778255	ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1
chr6_4	CDS	86778046	86778153	86778046	ID=Msa1002070-mRNA-1:cds;Parent=Msa1002070-mRNA-1

Gene Sequence

>Msa1002070

ATGGGAAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTTCTATGTGATGCTGAAGTTGCACTTATCATTTTTTCAAGCCGTGGCAAGCTTTTTCAATATAGTAGCACTGATATAAACAAAATCATTGAAAGGTATCGGCAATGTCGTTACAACAAGCCACAAGCTGGCAATTCATTAGGACATAATGAATCTCAGAATTTATACCAGGACTATTTAAAATTAAAGGCAAAATATGAGTCTCTCGACCGCAAGCAGAGGCATTTTCATGGGGAAGAGCTTGAGCAACTTAGCATGAAAGAATTGCAAAGACTCGAGGAACAGCTAGACTTAACCCTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCATGGCACGAGCTGAGGAATTACGAGAAAAAGTGCATCACTTGGAGGAGGTTAACAAAACATTGGATCCCAAGGTTTTTCCTTTCAAAATTCATGTTACTAGCTATGCTTTTCATCTATTCAGAATTTGCTCTATCTAA

Protein sequence

>Msa1002070

MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYNKPQAGNSLGHNESQNLYQDYLKLKAKYESLDRKQRHFHGEELEQLSMKELQRLEEQLDLTLTQARQQQMKKLMARAEELREKVHHLEEVNKTLDPKVFPFKIHVTSYAFHLFRICSI*