Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957470 | XP_024637690.1 | 87.019 | 416 | 21 | 2 | 12 | 426 | 213 | 596 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957470 | A0A072URA5 | 86.779 | 416 | 20 | 2 | 12 | 426 | 213 | 594 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0335320 | Msa0957470 | 0.800764 | 1.236680e-48 | -8.615850e-47 |
| Msa0957450 | Msa0957470 | 0.964833 | 7.916736e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957470 | MtrunA17_Chr4g0065931 | 97.628 | 253 | 4 | 2 | 176 | 426 | 1 | 253 | 9.65e-174 | 486 |
| Msa0957470 | MtrunA17_Chr2g0287221 | 54.327 | 416 | 113 | 7 | 12 | 426 | 213 | 552 | 8.82e-130 | 385 |
| Msa0957470 | MtrunA17_Chr4g0065941 | 91.667 | 132 | 11 | 0 | 12 | 143 | 213 | 344 | 1.28e-85 | 265 |
| Msa0957470 | MtrunA17_Chr4g0076631 | 59.302 | 86 | 32 | 1 | 12 | 94 | 214 | 299 | 7.12e-28 | 115 |
| Msa0957470 | MtrunA17_Chr2g0291031 | 64.384 | 73 | 26 | 0 | 12 | 84 | 214 | 286 | 3.67e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957470 | AT4G14290.4 | 44.471 | 416 | 153 | 12 | 12 | 421 | 63 | 406 | 2.98e-97 | 297 |
| Msa0957470 | AT3G23540.2 | 44.550 | 422 | 155 | 11 | 12 | 423 | 70 | 422 | 4.51e-97 | 297 |
| Msa0957470 | AT4G14290.3 | 44.471 | 416 | 153 | 12 | 12 | 421 | 98 | 441 | 9.24e-97 | 297 |
| Msa0957470 | AT4G14290.5 | 44.471 | 416 | 153 | 12 | 12 | 421 | 159 | 502 | 6.33e-96 | 297 |
| Msa0957470 | AT3G23540.3 | 44.550 | 422 | 155 | 11 | 12 | 423 | 186 | 538 | 2.32e-95 | 296 |
| Msa0957470 | AT4G14290.1 | 44.471 | 416 | 153 | 12 | 12 | 421 | 213 | 556 | 3.70e-95 | 296 |
| Msa0957470 | AT3G23540.1 | 44.550 | 422 | 155 | 11 | 12 | 423 | 213 | 565 | 1.01e-94 | 296 |
| Msa0957470 | AT4G14290.2 | 41.363 | 411 | 138 | 8 | 12 | 421 | 213 | 521 | 3.53e-89 | 280 |
| Msa0957470 | AT4G17150.5 | 60.563 | 71 | 28 | 0 | 12 | 82 | 199 | 269 | 3.26e-23 | 102 |
| Msa0957470 | AT4G17150.4 | 60.563 | 71 | 28 | 0 | 12 | 82 | 223 | 293 | 5.29e-23 | 100 |
| Msa0957470 | AT4G17150.3 | 60.563 | 71 | 28 | 0 | 12 | 82 | 223 | 293 | 5.30e-23 | 100 |
| Msa0957470 | AT4G17150.2 | 60.563 | 71 | 28 | 0 | 12 | 82 | 223 | 293 | 5.30e-23 | 100 |
| Msa0957470 | AT4G17150.1 | 60.563 | 71 | 28 | 0 | 12 | 82 | 223 | 293 | 5.53e-23 | 101 |
Find 98 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCCTGTGGCAGGGGTGGC+TGG | 0.145025 | 6_3:-68556763 | None:intergenic |
| TCATTATTTGTTTGCATTGC+AGG | 0.250710 | 6_3:+68554620 | Msa0957470:CDS |
| GAAGAAATAATTAAGAAATT+AGG | 0.264015 | 6_3:-68555331 | None:intergenic |
| TTACCGAAGTAATCATTTAC+AGG | 0.307741 | 6_3:-68555141 | None:intergenic |
| CAGTACTGTAGATGCTATTA+AGG | 0.316481 | 6_3:+68555432 | Msa0957470:CDS |
| CATCCTGCTCATTGGCCGTT+TGG | 0.334399 | 6_3:-68555464 | None:intergenic |
| TTGTCAGATGGTCATCCTTA+TGG | 0.348703 | 6_3:+68556240 | Msa0957470:CDS |
| GTCCTGTGGCAGGGGTGGCT+GGG | 0.361215 | 6_3:-68556762 | None:intergenic |
| TCTTTCTTCCTCCTCTGCAC+TGG | 0.372065 | 6_3:-68556337 | None:intergenic |
| GTATGATATTCAGATGTTAA+TGG | 0.372335 | 6_3:+68556457 | Msa0957470:intron |
| TGGAGATCTGTGCACGAATT+AGG | 0.376826 | 6_3:+68555262 | Msa0957470:CDS |
| GCATTAAACCATCCATGATA+TGG | 0.382988 | 6_3:-68556925 | None:intergenic |
| GCTGGTGGTTGTTCTGCCTT+CGG | 0.399267 | 6_3:-68556521 | None:intergenic |
| TTCTTCTGATGCAATGGAAA+TGG | 0.401054 | 6_3:-68556672 | None:intergenic |
| TATCAACTTGAAGACCTTGC+AGG | 0.403667 | 6_3:+68556306 | Msa0957470:CDS |
| CATCCAACACGGTGGGTACA+TGG | 0.408172 | 6_3:-68556266 | None:intergenic |
| GGATGGTTTAATGCGTCGTT+GGG | 0.413151 | 6_3:+68556934 | Msa0957470:CDS |
| TTTCCGAGTCAAGTCCAATT+GGG | 0.416021 | 6_3:+68556735 | Msa0957470:CDS |
| TCTGTATCTAACAAATAAAC+AGG | 0.417673 | 6_3:-68555397 | None:intergenic |
| TAATTAAGAAATTAGGTACT+TGG | 0.425318 | 6_3:-68555324 | None:intergenic |
| TGACTCGGAAACCGCTGAAA+TGG | 0.436142 | 6_3:-68556723 | None:intergenic |
| CCGCCACAGTAACTGTTGTT+AGG | 0.440346 | 6_3:+68556891 | Msa0957470:CDS |
| GTTTCCGAGTCAAGTCCAAT+TGG | 0.445373 | 6_3:+68556734 | Msa0957470:CDS |
| TCACTCTGATCGTATATTTG+AGG | 0.447447 | 6_3:+68554710 | Msa0957470:CDS |
| ATAATGTGTTGTCCTGTGGC+AGG | 0.463595 | 6_3:-68556772 | None:intergenic |
| AACCCAGCCACCCCTGCCAC+AGG | 0.466505 | 6_3:+68556760 | Msa0957470:CDS |
| TCGTATATTTGAGGCTTACA+TGG | 0.472947 | 6_3:+68554719 | Msa0957470:CDS |
| CAAACCTCCATCCTGCTCAT+TGG | 0.479086 | 6_3:-68555472 | None:intergenic |
| TCTTCCTCCTCTGCACTGGA+TGG | 0.479687 | 6_3:-68556333 | None:intergenic |
| TCTACAGTACTGCTAGTTGA+TGG | 0.481450 | 6_3:-68555421 | None:intergenic |
| CAAATAATGAAAGAATATGA+TGG | 0.484919 | 6_3:-68554607 | None:intergenic |
| GTGGGTACATGGGGACCATA+AGG | 0.484951 | 6_3:-68556255 | None:intergenic |
| GATGTTAATGGAAGCAGTAA+TGG | 0.488225 | 6_3:+68556469 | Msa0957470:intron |
| GTTCCAAACGGCCAATGAGC+AGG | 0.490303 | 6_3:+68555461 | Msa0957470:CDS |
| TGACAATTCAAAGCTTATCA+TGG | 0.492892 | 6_3:-68556223 | None:intergenic |
| AATGTGTTGTCCTGTGGCAG+GGG | 0.499356 | 6_3:-68556770 | None:intergenic |
| GAATCCTGCTGGCCATATCA+TGG | 0.504478 | 6_3:+68556913 | Msa0957470:CDS |
| CAAATATACGATCAGAGTGA+TGG | 0.507653 | 6_3:-68554707 | None:intergenic |
| TGGATGGTTTAATGCGTCGT+TGG | 0.508768 | 6_3:+68556933 | Msa0957470:CDS |
| TTGTATAAAATCATTGTCAA+TGG | 0.516700 | 6_3:-68554682 | None:intergenic |
| ATCCAACACGGTGGGTACAT+GGG | 0.517832 | 6_3:-68556265 | None:intergenic |
| TACAGATTCTTCTGATGCAA+TGG | 0.524140 | 6_3:-68556678 | None:intergenic |
| AAATATACGATCAGAGTGAT+GGG | 0.528350 | 6_3:-68554706 | None:intergenic |
| TAATGTGTTGTCCTGTGGCA+GGG | 0.537316 | 6_3:-68556771 | None:intergenic |
| ATGGCATGCCCTAATAGAGC+TGG | 0.538904 | 6_3:-68554663 | None:intergenic |
| TCTGCAACCTCCTGAGGATG+AGG | 0.539377 | 6_3:+68555098 | Msa0957470:CDS |
| TGTAAATGATTACTTCGGTA+AGG | 0.540682 | 6_3:+68555143 | Msa0957470:CDS |
| GATTCACCAACCTCATCCTC+AGG | 0.541847 | 6_3:-68555108 | None:intergenic |
| CCATCCATGATATGGCCAGC+AGG | 0.545268 | 6_3:-68556917 | None:intergenic |
| AAATAATGAAAGAATATGAT+GGG | 0.547238 | 6_3:-68554606 | None:intergenic |
| AGATGAACAAAGTGTTAATG+AGG | 0.548504 | 6_3:+68555836 | Msa0957470:CDS |
| TATCATGGATGAAGAGGGTG+GGG | 0.549659 | 6_3:-68556208 | None:intergenic |
| CAATGTTCTGCAACCTCCTG+AGG | 0.553134 | 6_3:+68555092 | Msa0957470:CDS |
| GACTCTTTACTCAGGATGCA+TGG | 0.555592 | 6_3:+68555242 | Msa0957470:intron |
| TTCCGAGTCAAGTCCAATTG+GGG | 0.556734 | 6_3:+68556736 | Msa0957470:CDS |
| TCCGCTTGTATTGCTAGACT+CGG | 0.564255 | 6_3:-68556801 | None:intergenic |
| ATCTAACAAATAAACAGGTA+AGG | 0.567059 | 6_3:-68555392 | None:intergenic |
| TGTGAGTCATCTTTATCTGA+TGG | 0.570709 | 6_3:-68556572 | None:intergenic |
| GTGTTGTCCTGTGGCAGGGG+TGG | 0.571540 | 6_3:-68556767 | None:intergenic |
| CAACCTCCTGAGGATGAGGT+TGG | 0.573360 | 6_3:+68555102 | Msa0957470:CDS |
| ACATTAGCAATACTACTGGC+TGG | 0.577814 | 6_3:-68556539 | None:intergenic |
| AAAGCTTATCATGGATGAAG+AGG | 0.577943 | 6_3:-68556214 | None:intergenic |
| ATAAGCTTTGAATTGTCAGA+TGG | 0.579614 | 6_3:+68556228 | Msa0957470:CDS |
| AATGGAGTCACTGAAGGACC+TGG | 0.585649 | 6_3:+68556487 | Msa0957470:CDS |
| TCAAAGTAAAACTGAGGACG+TGG | 0.589417 | 6_3:-68555048 | None:intergenic |
| AGATGACTCACATTCTTCAC+AGG | 0.589430 | 6_3:+68556583 | Msa0957470:CDS |
| CCTGCTGGCCATATCATGGA+TGG | 0.591171 | 6_3:+68556917 | Msa0957470:CDS |
| TCCAACACGGTGGGTACATG+GGG | 0.595552 | 6_3:-68556264 | None:intergenic |
| TTATCATGGATGAAGAGGGT+GGG | 0.596440 | 6_3:-68556209 | None:intergenic |
| CAAACGGCCAATGAGCAGGA+TGG | 0.600542 | 6_3:+68555465 | Msa0957470:CDS |
| CACTGGATGGAAAACCTGCA+AGG | 0.604166 | 6_3:-68556320 | None:intergenic |
| TTAAGGAAGTCAGTTCCAAA+CGG | 0.604253 | 6_3:+68555449 | Msa0957470:CDS |
| GACCCTGTAAATGATTACTT+CGG | 0.604489 | 6_3:+68555138 | Msa0957470:CDS |
| AGATACATTAGCAATACTAC+TGG | 0.612355 | 6_3:-68556543 | None:intergenic |
| AGCAGTAATGGAGTCACTGA+AGG | 0.616451 | 6_3:+68556481 | Msa0957470:CDS |
| TCCCCATGTACCCACCGTGT+TGG | 0.619550 | 6_3:+68556263 | Msa0957470:CDS |
| CTTATCATGGATGAAGAGGG+TGG | 0.623493 | 6_3:-68556210 | None:intergenic |
| ACTGTTGTTAGGAATCCTGC+TGG | 0.626917 | 6_3:+68556902 | Msa0957470:CDS |
| TCTTAATTATTTCTTCTGCG+TGG | 0.628590 | 6_3:+68555338 | Msa0957470:CDS |
| TGAGTCAAATACCATTTCAG+CGG | 0.630555 | 6_3:+68556712 | Msa0957470:CDS |
| GTTGGATGACAATCAGTATG+TGG | 0.637267 | 6_3:+68556281 | Msa0957470:CDS |
| TACCGAAGTAATCATTTACA+GGG | 0.638334 | 6_3:-68555140 | None:intergenic |
| AAGCTTATCATGGATGAAGA+GGG | 0.643532 | 6_3:-68556213 | None:intergenic |
| ACGGCCAATGAGCAGGATGG+AGG | 0.644801 | 6_3:+68555468 | Msa0957470:CDS |
| GCCGAGTCTAGCAATACAAG+CGG | 0.649415 | 6_3:+68556800 | Msa0957470:CDS |
| CCTGGAAGTACAAAATCCGA+AGG | 0.656273 | 6_3:+68556505 | Msa0957470:CDS |
| ACGGATAATGTGTTGTCCTG+TGG | 0.664488 | 6_3:-68556776 | None:intergenic |
| ATGGAATCAAAGTAAAACTG+AGG | 0.668425 | 6_3:-68555054 | None:intergenic |
| CCTAACAACAGTTACTGTGG+CGG | 0.668864 | 6_3:-68556891 | None:intergenic |
| TGTATTGCTAGACTCGGCTA+CGG | 0.671705 | 6_3:-68556795 | None:intergenic |
| TGATTGTCATCCAACACGGT+GGG | 0.675098 | 6_3:-68556273 | None:intergenic |
| AATATACGATCAGAGTGATG+GGG | 0.677083 | 6_3:-68554705 | None:intergenic |
| TCACCAACCTCATCCTCAGG+AGG | 0.681966 | 6_3:-68555105 | None:intergenic |
| TCCGAGTCAAGTCCAATTGG+GGG | 0.694971 | 6_3:+68556737 | Msa0957470:CDS |
| ATTCCTAACAACAGTTACTG+TGG | 0.707631 | 6_3:-68556894 | None:intergenic |
| CTGATTGTCATCCAACACGG+TGG | 0.711872 | 6_3:-68556274 | None:intergenic |
| ATACTGATTGTCATCCAACA+CGG | 0.712282 | 6_3:-68556277 | None:intergenic |
| TTAGCAATACTACTGGCTGG+TGG | 0.719984 | 6_3:-68556536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCATTTTTTATAGAAAA+AGG | - | chr6_3:68554765-68554784 | None:intergenic | 10.0% |
| !! | AAAAACATAATTAAATTTGA+GGG | + | chr6_3:68555012-68555031 | Msa0957470:CDS | 10.0% |
| !!! | TTGTTTTAAATAAAAATATG+AGG | - | chr6_3:68555743-68555762 | None:intergenic | 10.0% |
| !! | AATTAAAAAAAAGGATAAAA+AGG | - | chr6_3:68555867-68555886 | None:intergenic | 10.0% |
| !!! | TAATCATTTTTTATAGAAAA+AGG | - | chr6_3:68554765-68554784 | None:intergenic | 10.0% |
| !! | AAAAACATAATTAAATTTGA+GGG | + | chr6_3:68555012-68555031 | Msa0957470:CDS | 10.0% |
| !!! | TTGTTTTAAATAAAAATATG+AGG | - | chr6_3:68555743-68555762 | None:intergenic | 10.0% |
| !! | AATTAAAAAAAAGGATAAAA+AGG | - | chr6_3:68555867-68555886 | None:intergenic | 10.0% |
| !! | AAATAATGAAAGAATATGAT+GGG | - | chr6_3:68554609-68554628 | None:intergenic | 15.0% |
| !!! | GACTTATTTTATAATTTTGA+AGG | - | chr6_3:68554870-68554889 | None:intergenic | 15.0% |
| !! | CAAAAACATAATTAAATTTG+AGG | + | chr6_3:68555011-68555030 | Msa0957470:CDS | 15.0% |
| !! | GAAGAAATAATTAAGAAATT+AGG | - | chr6_3:68555334-68555353 | None:intergenic | 15.0% |
| !!! | TATATTTGCTATAAGATTAT+TGG | + | chr6_3:68555927-68555946 | Msa0957470:intron | 15.0% |
| !! | TAATTCAAATATCTAACTTT+AGG | + | chr6_3:68556082-68556101 | Msa0957470:intron | 15.0% |
| !! | TAACATACATGAAAAAAAAA+AGG | + | chr6_3:68556404-68556423 | Msa0957470:intron | 15.0% |
| !! | AAATAATGAAAGAATATGAT+GGG | - | chr6_3:68554609-68554628 | None:intergenic | 15.0% |
| !!! | GACTTATTTTATAATTTTGA+AGG | - | chr6_3:68554870-68554889 | None:intergenic | 15.0% |
| !! | CAAAAACATAATTAAATTTG+AGG | + | chr6_3:68555011-68555030 | Msa0957470:CDS | 15.0% |
| !! | GAAGAAATAATTAAGAAATT+AGG | - | chr6_3:68555334-68555353 | None:intergenic | 15.0% |
| !!! | TATATTTGCTATAAGATTAT+TGG | + | chr6_3:68555927-68555946 | Msa0957470:intron | 15.0% |
| !! | TAATTCAAATATCTAACTTT+AGG | + | chr6_3:68556082-68556101 | Msa0957470:intron | 15.0% |
| !! | TAACATACATGAAAAAAAAA+AGG | + | chr6_3:68556404-68556423 | Msa0957470:intron | 15.0% |
| !! | CAAATAATGAAAGAATATGA+TGG | - | chr6_3:68554610-68554629 | None:intergenic | 20.0% |
| !! | TTGTATAAAATCATTGTCAA+TGG | - | chr6_3:68554685-68554704 | None:intergenic | 20.0% |
| !! | ATTGTGAAAAAAGATGTTTA+TGG | - | chr6_3:68555076-68555095 | None:intergenic | 20.0% |
| !!! | CAGTGAAATTTTATCAAAAA+TGG | - | chr6_3:68555196-68555215 | None:intergenic | 20.0% |
| !! | TAATTAAGAAATTAGGTACT+TGG | - | chr6_3:68555327-68555346 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGAGGAGA+CGG | - | chr6_3:68555711-68555730 | None:intergenic | 20.0% |
| !!! | CGGTTTTAAATAAAAATATG+AGG | - | chr6_3:68555717-68555736 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGAGGAGA+CGG | - | chr6_3:68555711-68555730 | None:intergenic | 20.0% |
| !! | AAATTTGTATTTGAATTCTG+TGG | + | chr6_3:68555761-68555780 | Msa0957470:intron | 20.0% |
| !!! | TTTTTTCATGTATGTTAATC+AGG | - | chr6_3:68556401-68556420 | None:intergenic | 20.0% |
| !! | CAAATAATGAAAGAATATGA+TGG | - | chr6_3:68554610-68554629 | None:intergenic | 20.0% |
| !! | TTGTATAAAATCATTGTCAA+TGG | - | chr6_3:68554685-68554704 | None:intergenic | 20.0% |
| !! | ATTGTGAAAAAAGATGTTTA+TGG | - | chr6_3:68555076-68555095 | None:intergenic | 20.0% |
| !!! | CAGTGAAATTTTATCAAAAA+TGG | - | chr6_3:68555196-68555215 | None:intergenic | 20.0% |
| !! | TAATTAAGAAATTAGGTACT+TGG | - | chr6_3:68555327-68555346 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGAGGAGA+CGG | - | chr6_3:68555711-68555730 | None:intergenic | 20.0% |
| !!! | CGGTTTTAAATAAAAATATG+AGG | - | chr6_3:68555717-68555736 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGAGGAGA+CGG | - | chr6_3:68555711-68555730 | None:intergenic | 20.0% |
| !! | AAATTTGTATTTGAATTCTG+TGG | + | chr6_3:68555761-68555780 | Msa0957470:intron | 20.0% |
| !!! | TTTTTTCATGTATGTTAATC+AGG | - | chr6_3:68556401-68556420 | None:intergenic | 20.0% |
| ! | AAGCAACTTTAAACATCTAA+AGG | - | chr6_3:68554892-68554911 | None:intergenic | 25.0% |
| ! | AGTACAATAGAAATATCTAG+AGG | - | chr6_3:68554921-68554940 | None:intergenic | 25.0% |
| !! | GAATCATCTTCTAAAAACAA+AGG | + | chr6_3:68555295-68555314 | Msa0957470:CDS | 25.0% |
| ! | GATTCACACAAAAATTCTAA+TGG | - | chr6_3:68555367-68555386 | None:intergenic | 25.0% |
| ! | ATCTAACAAATAAACAGGTA+AGG | - | chr6_3:68555395-68555414 | None:intergenic | 25.0% |
| ! | TCTGTATCTAACAAATAAAC+AGG | - | chr6_3:68555400-68555419 | None:intergenic | 25.0% |
| ! | ATTAGTTAATGTGATGCTAA+TGG | - | chr6_3:68555682-68555701 | None:intergenic | 25.0% |
| ! | AAATAAAAATATGAGGAGAC+GGG | - | chr6_3:68555710-68555729 | None:intergenic | 25.0% |
| !!! | TCTTTTGAAGAAATATCAGA+TGG | - | chr6_3:68555819-68555838 | None:intergenic | 25.0% |
| ! | GATTATTGGCAATTATACAA+TGG | + | chr6_3:68555941-68555960 | Msa0957470:intron | 25.0% |
| ! | ATTATACAATGGACCATTTA+CGG | + | chr6_3:68555952-68555971 | Msa0957470:intron | 25.0% |
| ! | TTGAAACTGATGAAATACTT+AGG | + | chr6_3:68556105-68556124 | Msa0957470:intron | 25.0% |
| ! | GTATGATATTCAGATGTTAA+TGG | + | chr6_3:68556457-68556476 | Msa0957470:intron | 25.0% |
| !! | TTTTCAAAAATAGCAACTCA+CGG | + | chr6_3:68556966-68556985 | Msa0957470:CDS | 25.0% |
| ! | AAGCAACTTTAAACATCTAA+AGG | - | chr6_3:68554892-68554911 | None:intergenic | 25.0% |
| ! | AGTACAATAGAAATATCTAG+AGG | - | chr6_3:68554921-68554940 | None:intergenic | 25.0% |
| !! | GAATCATCTTCTAAAAACAA+AGG | + | chr6_3:68555295-68555314 | Msa0957470:CDS | 25.0% |
| ! | GATTCACACAAAAATTCTAA+TGG | - | chr6_3:68555367-68555386 | None:intergenic | 25.0% |
| ! | ATCTAACAAATAAACAGGTA+AGG | - | chr6_3:68555395-68555414 | None:intergenic | 25.0% |
| ! | TCTGTATCTAACAAATAAAC+AGG | - | chr6_3:68555400-68555419 | None:intergenic | 25.0% |
| ! | ATTAGTTAATGTGATGCTAA+TGG | - | chr6_3:68555682-68555701 | None:intergenic | 25.0% |
| ! | AAATAAAAATATGAGGAGAC+GGG | - | chr6_3:68555710-68555729 | None:intergenic | 25.0% |
| !!! | TCTTTTGAAGAAATATCAGA+TGG | - | chr6_3:68555819-68555838 | None:intergenic | 25.0% |
| ! | GATTATTGGCAATTATACAA+TGG | + | chr6_3:68555941-68555960 | Msa0957470:intron | 25.0% |
| ! | ATTATACAATGGACCATTTA+CGG | + | chr6_3:68555952-68555971 | Msa0957470:intron | 25.0% |
| ! | TTGAAACTGATGAAATACTT+AGG | + | chr6_3:68556105-68556124 | Msa0957470:intron | 25.0% |
| ! | GTATGATATTCAGATGTTAA+TGG | + | chr6_3:68556457-68556476 | Msa0957470:intron | 25.0% |
| !! | TTTTCAAAAATAGCAACTCA+CGG | + | chr6_3:68556966-68556985 | Msa0957470:CDS | 25.0% |
| TCATTATTTGTTTGCATTGC+AGG | + | chr6_3:68554620-68554639 | Msa0957470:CDS | 30.0% | |
| AAATATACGATCAGAGTGAT+GGG | - | chr6_3:68554709-68554728 | None:intergenic | 30.0% | |
| ! | GTTTTATATGCTCTGCATTA+CGG | + | chr6_3:68554953-68554972 | Msa0957470:intron | 30.0% |
| TGCATTACGGATCTTTAATA+TGG | + | chr6_3:68554966-68554985 | Msa0957470:intron | 30.0% | |
| GCATTACGGATCTTTAATAT+GGG | + | chr6_3:68554967-68554986 | Msa0957470:intron | 30.0% | |
| ATGGAATCAAAGTAAAACTG+AGG | - | chr6_3:68555057-68555076 | None:intergenic | 30.0% | |
| TACCGAAGTAATCATTTACA+GGG | - | chr6_3:68555143-68555162 | None:intergenic | 30.0% | |
| TTACCGAAGTAATCATTTAC+AGG | - | chr6_3:68555144-68555163 | None:intergenic | 30.0% | |
| TGTAAATGATTACTTCGGTA+AGG | + | chr6_3:68555143-68555162 | Msa0957470:CDS | 30.0% | |
| TAAAACTTGACTCTTTACTC+AGG | + | chr6_3:68555234-68555253 | Msa0957470:intron | 30.0% | |
| ! | ATCTTCTAAAAACAAAGGCA+TGG | + | chr6_3:68555300-68555319 | Msa0957470:CDS | 30.0% |
| ! | TCTTAATTATTTCTTCTGCG+TGG | + | chr6_3:68555338-68555357 | Msa0957470:CDS | 30.0% |
| TTGTATTTGAACTACACTTG+AGG | + | chr6_3:68555576-68555595 | Msa0957470:intron | 30.0% | |
| AATAAAAATATGAGGAGACG+GGG | - | chr6_3:68555709-68555728 | None:intergenic | 30.0% | |
| ! | AGATGAACAAAGTGTTAATG+AGG | + | chr6_3:68555836-68555855 | Msa0957470:CDS | 30.0% |
| TTATACAATGGACCATTTAC+GGG | + | chr6_3:68555953-68555972 | Msa0957470:intron | 30.0% | |
| TGACAATTCAAAGCTTATCA+TGG | - | chr6_3:68556226-68556245 | None:intergenic | 30.0% | |
| !! | ATAAGCTTTGAATTGTCAGA+TGG | + | chr6_3:68556228-68556247 | Msa0957470:CDS | 30.0% |
| TTTCATGTATGTTAATCAGG+TGG | - | chr6_3:68556398-68556417 | None:intergenic | 30.0% | |
| AGATACATTAGCAATACTAC+TGG | - | chr6_3:68556546-68556565 | None:intergenic | 30.0% | |
| ! | AGAGAAGATTCTTTTTGCAT+GGG | - | chr6_3:68556620-68556639 | None:intergenic | 30.0% |
| ! | TAGAGAAGATTCTTTTTGCA+TGG | - | chr6_3:68556621-68556640 | None:intergenic | 30.0% |
| TCATTATTTGTTTGCATTGC+AGG | + | chr6_3:68554620-68554639 | Msa0957470:CDS | 30.0% | |
| AAATATACGATCAGAGTGAT+GGG | - | chr6_3:68554709-68554728 | None:intergenic | 30.0% | |
| ! | GTTTTATATGCTCTGCATTA+CGG | + | chr6_3:68554953-68554972 | Msa0957470:intron | 30.0% |
| TGCATTACGGATCTTTAATA+TGG | + | chr6_3:68554966-68554985 | Msa0957470:intron | 30.0% | |
| GCATTACGGATCTTTAATAT+GGG | + | chr6_3:68554967-68554986 | Msa0957470:intron | 30.0% | |
| ATGGAATCAAAGTAAAACTG+AGG | - | chr6_3:68555057-68555076 | None:intergenic | 30.0% | |
| TACCGAAGTAATCATTTACA+GGG | - | chr6_3:68555143-68555162 | None:intergenic | 30.0% | |
| TTACCGAAGTAATCATTTAC+AGG | - | chr6_3:68555144-68555163 | None:intergenic | 30.0% | |
| TGTAAATGATTACTTCGGTA+AGG | + | chr6_3:68555143-68555162 | Msa0957470:CDS | 30.0% | |
| TAAAACTTGACTCTTTACTC+AGG | + | chr6_3:68555234-68555253 | Msa0957470:intron | 30.0% | |
| ! | ATCTTCTAAAAACAAAGGCA+TGG | + | chr6_3:68555300-68555319 | Msa0957470:CDS | 30.0% |
| ! | TCTTAATTATTTCTTCTGCG+TGG | + | chr6_3:68555338-68555357 | Msa0957470:CDS | 30.0% |
| TTGTATTTGAACTACACTTG+AGG | + | chr6_3:68555576-68555595 | Msa0957470:intron | 30.0% | |
| AATAAAAATATGAGGAGACG+GGG | - | chr6_3:68555709-68555728 | None:intergenic | 30.0% | |
| ! | AGATGAACAAAGTGTTAATG+AGG | + | chr6_3:68555836-68555855 | Msa0957470:CDS | 30.0% |
| TTATACAATGGACCATTTAC+GGG | + | chr6_3:68555953-68555972 | Msa0957470:intron | 30.0% | |
| TGACAATTCAAAGCTTATCA+TGG | - | chr6_3:68556226-68556245 | None:intergenic | 30.0% | |
| !! | ATAAGCTTTGAATTGTCAGA+TGG | + | chr6_3:68556228-68556247 | Msa0957470:CDS | 30.0% |
| TTTCATGTATGTTAATCAGG+TGG | - | chr6_3:68556398-68556417 | None:intergenic | 30.0% | |
| AGATACATTAGCAATACTAC+TGG | - | chr6_3:68556546-68556565 | None:intergenic | 30.0% | |
| ! | AGAGAAGATTCTTTTTGCAT+GGG | - | chr6_3:68556620-68556639 | None:intergenic | 30.0% |
| ! | TAGAGAAGATTCTTTTTGCA+TGG | - | chr6_3:68556621-68556640 | None:intergenic | 30.0% |
| !! | TGTTTTGTTCCAGCTCTATT+AGG | + | chr6_3:68554654-68554673 | Msa0957470:CDS | 35.0% |
| !! | GTTTTGTTCCAGCTCTATTA+GGG | + | chr6_3:68554655-68554674 | Msa0957470:CDS | 35.0% |
| AATATACGATCAGAGTGATG+GGG | - | chr6_3:68554708-68554727 | None:intergenic | 35.0% | |
| CAAATATACGATCAGAGTGA+TGG | - | chr6_3:68554710-68554729 | None:intergenic | 35.0% | |
| TCACTCTGATCGTATATTTG+AGG | + | chr6_3:68554710-68554729 | Msa0957470:CDS | 35.0% | |
| ! | TCGTATATTTGAGGCTTACA+TGG | + | chr6_3:68554719-68554738 | Msa0957470:CDS | 35.0% |
| TTGTCAACTTCTTGTTCTGT+TGG | + | chr6_3:68554800-68554819 | Msa0957470:intron | 35.0% | |
| TGTCAACTTCTTGTTCTGTT+GGG | + | chr6_3:68554801-68554820 | Msa0957470:intron | 35.0% | |
| AAAGGCCTGCAAAATATGAT+GGG | - | chr6_3:68554839-68554858 | None:intergenic | 35.0% | |
| TAAAGGCCTGCAAAATATGA+TGG | - | chr6_3:68554840-68554859 | None:intergenic | 35.0% | |
| !! | ATTTTGAAGGCATGCTCTAA+AGG | - | chr6_3:68554857-68554876 | None:intergenic | 35.0% |
| GACCCTGTAAATGATTACTT+CGG | + | chr6_3:68555138-68555157 | Msa0957470:CDS | 35.0% | |
| CAGTACTGTAGATGCTATTA+AGG | + | chr6_3:68555432-68555451 | Msa0957470:CDS | 35.0% | |
| TTAAGGAAGTCAGTTCCAAA+CGG | + | chr6_3:68555449-68555468 | Msa0957470:CDS | 35.0% | |
| ATAAAAATATGAGGAGACGG+GGG | - | chr6_3:68555708-68555727 | None:intergenic | 35.0% | |
| ! | TTTATTGCATGACTTTTCCC+AGG | + | chr6_3:68555791-68555810 | Msa0957470:intron | 35.0% |
| AGAAATATCAGATGGAACCT+GGG | - | chr6_3:68555811-68555830 | None:intergenic | 35.0% | |
| AAGAAATATCAGATGGAACC+TGG | - | chr6_3:68555812-68555831 | None:intergenic | 35.0% | |
| !!! | TTGCGCCACATACATTTTTT+TGG | + | chr6_3:68555992-68556011 | Msa0957470:intron | 35.0% |
| CACGACCAAAAAAATGTATG+TGG | - | chr6_3:68556000-68556019 | None:intergenic | 35.0% | |
| !!! | CACATACATTTTTTTGGTCG+TGG | + | chr6_3:68555998-68556017 | Msa0957470:intron | 35.0% |
| !!! | ATACATTTTTTTGGTCGTGG+TGG | + | chr6_3:68556001-68556020 | Msa0957470:intron | 35.0% |
| GTAGTAGGTTAAACTAGAAG+TGG | - | chr6_3:68556039-68556058 | None:intergenic | 35.0% | |
| ! | GAGAATCTAGTTCATGTATG+TGG | - | chr6_3:68556138-68556157 | None:intergenic | 35.0% |
| AAGCTTATCATGGATGAAGA+GGG | - | chr6_3:68556216-68556235 | None:intergenic | 35.0% | |
| AAAGCTTATCATGGATGAAG+AGG | - | chr6_3:68556217-68556236 | None:intergenic | 35.0% | |
| ! | ATACTGATTGTCATCCAACA+CGG | - | chr6_3:68556280-68556299 | None:intergenic | 35.0% |
| GATGTTAATGGAAGCAGTAA+TGG | + | chr6_3:68556469-68556488 | Msa0957470:intron | 35.0% | |
| TGTGAGTCATCTTTATCTGA+TGG | - | chr6_3:68556575-68556594 | None:intergenic | 35.0% | |
| TTCTTCTGATGCAATGGAAA+TGG | - | chr6_3:68556675-68556694 | None:intergenic | 35.0% | |
| TACAGATTCTTCTGATGCAA+TGG | - | chr6_3:68556681-68556700 | None:intergenic | 35.0% | |
| TGAGTCAAATACCATTTCAG+CGG | + | chr6_3:68556712-68556731 | Msa0957470:CDS | 35.0% | |
| ATTCCTAACAACAGTTACTG+TGG | - | chr6_3:68556897-68556916 | None:intergenic | 35.0% | |
| GCATTAAACCATCCATGATA+TGG | - | chr6_3:68556928-68556947 | None:intergenic | 35.0% | |
| !! | TGTTTTGTTCCAGCTCTATT+AGG | + | chr6_3:68554654-68554673 | Msa0957470:CDS | 35.0% |
| !! | GTTTTGTTCCAGCTCTATTA+GGG | + | chr6_3:68554655-68554674 | Msa0957470:CDS | 35.0% |
| AATATACGATCAGAGTGATG+GGG | - | chr6_3:68554708-68554727 | None:intergenic | 35.0% | |
| CAAATATACGATCAGAGTGA+TGG | - | chr6_3:68554710-68554729 | None:intergenic | 35.0% | |
| TCACTCTGATCGTATATTTG+AGG | + | chr6_3:68554710-68554729 | Msa0957470:CDS | 35.0% | |
| ! | TCGTATATTTGAGGCTTACA+TGG | + | chr6_3:68554719-68554738 | Msa0957470:CDS | 35.0% |
| TTGTCAACTTCTTGTTCTGT+TGG | + | chr6_3:68554800-68554819 | Msa0957470:intron | 35.0% | |
| TGTCAACTTCTTGTTCTGTT+GGG | + | chr6_3:68554801-68554820 | Msa0957470:intron | 35.0% | |
| AAAGGCCTGCAAAATATGAT+GGG | - | chr6_3:68554839-68554858 | None:intergenic | 35.0% | |
| TAAAGGCCTGCAAAATATGA+TGG | - | chr6_3:68554840-68554859 | None:intergenic | 35.0% | |
| !! | ATTTTGAAGGCATGCTCTAA+AGG | - | chr6_3:68554857-68554876 | None:intergenic | 35.0% |
| GACCCTGTAAATGATTACTT+CGG | + | chr6_3:68555138-68555157 | Msa0957470:CDS | 35.0% | |
| CAGTACTGTAGATGCTATTA+AGG | + | chr6_3:68555432-68555451 | Msa0957470:CDS | 35.0% | |
| TTAAGGAAGTCAGTTCCAAA+CGG | + | chr6_3:68555449-68555468 | Msa0957470:CDS | 35.0% | |
| ATAAAAATATGAGGAGACGG+GGG | - | chr6_3:68555708-68555727 | None:intergenic | 35.0% | |
| ! | TTTATTGCATGACTTTTCCC+AGG | + | chr6_3:68555791-68555810 | Msa0957470:intron | 35.0% |
| AGAAATATCAGATGGAACCT+GGG | - | chr6_3:68555811-68555830 | None:intergenic | 35.0% | |
| AAGAAATATCAGATGGAACC+TGG | - | chr6_3:68555812-68555831 | None:intergenic | 35.0% | |
| !!! | TTGCGCCACATACATTTTTT+TGG | + | chr6_3:68555992-68556011 | Msa0957470:intron | 35.0% |
| CACGACCAAAAAAATGTATG+TGG | - | chr6_3:68556000-68556019 | None:intergenic | 35.0% | |
| !!! | CACATACATTTTTTTGGTCG+TGG | + | chr6_3:68555998-68556017 | Msa0957470:intron | 35.0% |
| !!! | ATACATTTTTTTGGTCGTGG+TGG | + | chr6_3:68556001-68556020 | Msa0957470:intron | 35.0% |
| GTAGTAGGTTAAACTAGAAG+TGG | - | chr6_3:68556039-68556058 | None:intergenic | 35.0% | |
| ! | GAGAATCTAGTTCATGTATG+TGG | - | chr6_3:68556138-68556157 | None:intergenic | 35.0% |
| AAGCTTATCATGGATGAAGA+GGG | - | chr6_3:68556216-68556235 | None:intergenic | 35.0% | |
| AAAGCTTATCATGGATGAAG+AGG | - | chr6_3:68556217-68556236 | None:intergenic | 35.0% | |
| ! | ATACTGATTGTCATCCAACA+CGG | - | chr6_3:68556280-68556299 | None:intergenic | 35.0% |
| GATGTTAATGGAAGCAGTAA+TGG | + | chr6_3:68556469-68556488 | Msa0957470:intron | 35.0% | |
| TGTGAGTCATCTTTATCTGA+TGG | - | chr6_3:68556575-68556594 | None:intergenic | 35.0% | |
| TTCTTCTGATGCAATGGAAA+TGG | - | chr6_3:68556675-68556694 | None:intergenic | 35.0% | |
| TACAGATTCTTCTGATGCAA+TGG | - | chr6_3:68556681-68556700 | None:intergenic | 35.0% | |
| TGAGTCAAATACCATTTCAG+CGG | + | chr6_3:68556712-68556731 | Msa0957470:CDS | 35.0% | |
| ATTCCTAACAACAGTTACTG+TGG | - | chr6_3:68556897-68556916 | None:intergenic | 35.0% | |
| GCATTAAACCATCCATGATA+TGG | - | chr6_3:68556928-68556947 | None:intergenic | 35.0% | |
| ! | AAGTCCCCATCATATTTTGC+AGG | + | chr6_3:68554831-68554850 | Msa0957470:intron | 40.0% |
| AAGGCCTGCAAAATATGATG+GGG | - | chr6_3:68554838-68554857 | None:intergenic | 40.0% | |
| TCAAAGTAAAACTGAGGACG+TGG | - | chr6_3:68555051-68555070 | None:intergenic | 40.0% | |
| TCTACAGTACTGCTAGTTGA+TGG | - | chr6_3:68555424-68555443 | None:intergenic | 40.0% | |
| GATTCGAACTAAGCAACTTG+AGG | - | chr6_3:68555635-68555654 | None:intergenic | 40.0% | |
| GAATTACATTCTTCAAGCCC+AGG | - | chr6_3:68556068-68556087 | None:intergenic | 40.0% | |
| ! | TGCATGATTTTCTTGCAAGC+AGG | + | chr6_3:68556164-68556183 | Msa0957470:intron | 40.0% |
| TTATCATGGATGAAGAGGGT+GGG | - | chr6_3:68556212-68556231 | None:intergenic | 40.0% | |
| TTGTCAGATGGTCATCCTTA+TGG | + | chr6_3:68556240-68556259 | Msa0957470:CDS | 40.0% | |
| GTTGGATGACAATCAGTATG+TGG | + | chr6_3:68556281-68556300 | Msa0957470:CDS | 40.0% | |
| TATCAACTTGAAGACCTTGC+AGG | + | chr6_3:68556306-68556325 | Msa0957470:CDS | 40.0% | |
| ACATTAGCAATACTACTGGC+TGG | - | chr6_3:68556542-68556561 | None:intergenic | 40.0% | |
| AGATGACTCACATTCTTCAC+AGG | + | chr6_3:68556583-68556602 | Msa0957470:CDS | 40.0% | |
| TTTCCGAGTCAAGTCCAATT+GGG | + | chr6_3:68556735-68556754 | Msa0957470:CDS | 40.0% | |
| ! | AAGTCCCCATCATATTTTGC+AGG | + | chr6_3:68554831-68554850 | Msa0957470:intron | 40.0% |
| AAGGCCTGCAAAATATGATG+GGG | - | chr6_3:68554838-68554857 | None:intergenic | 40.0% | |
| TCAAAGTAAAACTGAGGACG+TGG | - | chr6_3:68555051-68555070 | None:intergenic | 40.0% | |
| TCTACAGTACTGCTAGTTGA+TGG | - | chr6_3:68555424-68555443 | None:intergenic | 40.0% | |
| GATTCGAACTAAGCAACTTG+AGG | - | chr6_3:68555635-68555654 | None:intergenic | 40.0% | |
| GAATTACATTCTTCAAGCCC+AGG | - | chr6_3:68556068-68556087 | None:intergenic | 40.0% | |
| ! | TGCATGATTTTCTTGCAAGC+AGG | + | chr6_3:68556164-68556183 | Msa0957470:intron | 40.0% |
| TTATCATGGATGAAGAGGGT+GGG | - | chr6_3:68556212-68556231 | None:intergenic | 40.0% | |
| TTGTCAGATGGTCATCCTTA+TGG | + | chr6_3:68556240-68556259 | Msa0957470:CDS | 40.0% | |
| GTTGGATGACAATCAGTATG+TGG | + | chr6_3:68556281-68556300 | Msa0957470:CDS | 40.0% | |
| TATCAACTTGAAGACCTTGC+AGG | + | chr6_3:68556306-68556325 | Msa0957470:CDS | 40.0% | |
| ACATTAGCAATACTACTGGC+TGG | - | chr6_3:68556542-68556561 | None:intergenic | 40.0% | |
| AGATGACTCACATTCTTCAC+AGG | + | chr6_3:68556583-68556602 | Msa0957470:CDS | 40.0% | |
| TTTCCGAGTCAAGTCCAATT+GGG | + | chr6_3:68556735-68556754 | Msa0957470:CDS | 40.0% | |
| TATGGGTTTCTGTGCTTTGC+AGG | + | chr6_3:68554984-68555003 | Msa0957470:intron | 45.0% | |
| ATGGGTTTCTGTGCTTTGCA+GGG | + | chr6_3:68554985-68555004 | Msa0957470:intron | 45.0% | |
| GACTCTTTACTCAGGATGCA+TGG | + | chr6_3:68555242-68555261 | Msa0957470:intron | 45.0% | |
| TGGAGATCTGTGCACGAATT+AGG | + | chr6_3:68555262-68555281 | Msa0957470:CDS | 45.0% | |
| TTGCTTAGTTCGAATCCCCT+CGG | + | chr6_3:68555639-68555658 | Msa0957470:intron | 45.0% | |
| ! | ATTTTACAACCACTCCCGAG+GGG | - | chr6_3:68555657-68555676 | None:intergenic | 45.0% |
| ! | CATTTTACAACCACTCCCGA+GGG | - | chr6_3:68555658-68555677 | None:intergenic | 45.0% |
| ! | TCATTTTACAACCACTCCCG+AGG | - | chr6_3:68555659-68555678 | None:intergenic | 45.0% |
| GGCGCAAAATAGAAATGCAG+TGG | - | chr6_3:68555979-68555998 | None:intergenic | 45.0% | |
| !!! | TTTTTTTGGTCGTGGTGGTC+TGG | + | chr6_3:68556006-68556025 | Msa0957470:intron | 45.0% |
| TTAACCTACTACCCAGTACC+TGG | + | chr6_3:68556047-68556066 | Msa0957470:intron | 45.0% | |
| TAACCTACTACCCAGTACCT+GGG | + | chr6_3:68556048-68556067 | Msa0957470:intron | 45.0% | |
| ATTCTTCAAGCCCAGGTACT+GGG | - | chr6_3:68556061-68556080 | None:intergenic | 45.0% | |
| TATCATGGATGAAGAGGGTG+GGG | - | chr6_3:68556211-68556230 | None:intergenic | 45.0% | |
| CTTATCATGGATGAAGAGGG+TGG | - | chr6_3:68556213-68556232 | None:intergenic | 45.0% | |
| TGATTGTCATCCAACACGGT+GGG | - | chr6_3:68556276-68556295 | None:intergenic | 45.0% | |
| ! | AGCAGTAATGGAGTCACTGA+AGG | + | chr6_3:68556481-68556500 | Msa0957470:CDS | 45.0% |
| ! | CCTTCGGATTTTGTACTTCC+AGG | - | chr6_3:68556508-68556527 | None:intergenic | 45.0% |
| ! | CCTGGAAGTACAAAATCCGA+AGG | + | chr6_3:68556505-68556524 | Msa0957470:CDS | 45.0% |
| ! | TTAGCAATACTACTGGCTGG+TGG | - | chr6_3:68556539-68556558 | None:intergenic | 45.0% |
| GTTTCCGAGTCAAGTCCAAT+TGG | + | chr6_3:68556734-68556753 | Msa0957470:CDS | 45.0% | |
| TTCCGAGTCAAGTCCAATTG+GGG | + | chr6_3:68556736-68556755 | Msa0957470:CDS | 45.0% | |
| TAATGTGTTGTCCTGTGGCA+GGG | - | chr6_3:68556774-68556793 | None:intergenic | 45.0% | |
| ATAATGTGTTGTCCTGTGGC+AGG | - | chr6_3:68556775-68556794 | None:intergenic | 45.0% | |
| ACGGATAATGTGTTGTCCTG+TGG | - | chr6_3:68556779-68556798 | None:intergenic | 45.0% | |
| TGTATTGCTAGACTCGGCTA+CGG | - | chr6_3:68556798-68556817 | None:intergenic | 45.0% | |
| TCCGCTTGTATTGCTAGACT+CGG | - | chr6_3:68556804-68556823 | None:intergenic | 45.0% | |
| CCTAACAACAGTTACTGTGG+CGG | - | chr6_3:68556894-68556913 | None:intergenic | 45.0% | |
| ACTGTTGTTAGGAATCCTGC+TGG | + | chr6_3:68556902-68556921 | Msa0957470:CDS | 45.0% | |
| TGGATGGTTTAATGCGTCGT+TGG | + | chr6_3:68556933-68556952 | Msa0957470:CDS | 45.0% | |
| GGATGGTTTAATGCGTCGTT+GGG | + | chr6_3:68556934-68556953 | Msa0957470:CDS | 45.0% | |
| TATGGGTTTCTGTGCTTTGC+AGG | + | chr6_3:68554984-68555003 | Msa0957470:intron | 45.0% | |
| ATGGGTTTCTGTGCTTTGCA+GGG | + | chr6_3:68554985-68555004 | Msa0957470:intron | 45.0% | |
| GACTCTTTACTCAGGATGCA+TGG | + | chr6_3:68555242-68555261 | Msa0957470:intron | 45.0% | |
| TGGAGATCTGTGCACGAATT+AGG | + | chr6_3:68555262-68555281 | Msa0957470:CDS | 45.0% | |
| TTGCTTAGTTCGAATCCCCT+CGG | + | chr6_3:68555639-68555658 | Msa0957470:intron | 45.0% | |
| ! | ATTTTACAACCACTCCCGAG+GGG | - | chr6_3:68555657-68555676 | None:intergenic | 45.0% |
| ! | CATTTTACAACCACTCCCGA+GGG | - | chr6_3:68555658-68555677 | None:intergenic | 45.0% |
| ! | TCATTTTACAACCACTCCCG+AGG | - | chr6_3:68555659-68555678 | None:intergenic | 45.0% |
| GGCGCAAAATAGAAATGCAG+TGG | - | chr6_3:68555979-68555998 | None:intergenic | 45.0% | |
| !!! | TTTTTTTGGTCGTGGTGGTC+TGG | + | chr6_3:68556006-68556025 | Msa0957470:intron | 45.0% |
| TTAACCTACTACCCAGTACC+TGG | + | chr6_3:68556047-68556066 | Msa0957470:intron | 45.0% | |
| TAACCTACTACCCAGTACCT+GGG | + | chr6_3:68556048-68556067 | Msa0957470:intron | 45.0% | |
| ATTCTTCAAGCCCAGGTACT+GGG | - | chr6_3:68556061-68556080 | None:intergenic | 45.0% | |
| TATCATGGATGAAGAGGGTG+GGG | - | chr6_3:68556211-68556230 | None:intergenic | 45.0% | |
| CTTATCATGGATGAAGAGGG+TGG | - | chr6_3:68556213-68556232 | None:intergenic | 45.0% | |
| TGATTGTCATCCAACACGGT+GGG | - | chr6_3:68556276-68556295 | None:intergenic | 45.0% | |
| ! | AGCAGTAATGGAGTCACTGA+AGG | + | chr6_3:68556481-68556500 | Msa0957470:CDS | 45.0% |
| ! | CCTTCGGATTTTGTACTTCC+AGG | - | chr6_3:68556508-68556527 | None:intergenic | 45.0% |
| ! | CCTGGAAGTACAAAATCCGA+AGG | + | chr6_3:68556505-68556524 | Msa0957470:CDS | 45.0% |
| ! | TTAGCAATACTACTGGCTGG+TGG | - | chr6_3:68556539-68556558 | None:intergenic | 45.0% |
| GTTTCCGAGTCAAGTCCAAT+TGG | + | chr6_3:68556734-68556753 | Msa0957470:CDS | 45.0% | |
| TTCCGAGTCAAGTCCAATTG+GGG | + | chr6_3:68556736-68556755 | Msa0957470:CDS | 45.0% | |
| TAATGTGTTGTCCTGTGGCA+GGG | - | chr6_3:68556774-68556793 | None:intergenic | 45.0% | |
| ATAATGTGTTGTCCTGTGGC+AGG | - | chr6_3:68556775-68556794 | None:intergenic | 45.0% | |
| ACGGATAATGTGTTGTCCTG+TGG | - | chr6_3:68556779-68556798 | None:intergenic | 45.0% | |
| TGTATTGCTAGACTCGGCTA+CGG | - | chr6_3:68556798-68556817 | None:intergenic | 45.0% | |
| TCCGCTTGTATTGCTAGACT+CGG | - | chr6_3:68556804-68556823 | None:intergenic | 45.0% | |
| CCTAACAACAGTTACTGTGG+CGG | - | chr6_3:68556894-68556913 | None:intergenic | 45.0% | |
| ACTGTTGTTAGGAATCCTGC+TGG | + | chr6_3:68556902-68556921 | Msa0957470:CDS | 45.0% | |
| TGGATGGTTTAATGCGTCGT+TGG | + | chr6_3:68556933-68556952 | Msa0957470:CDS | 45.0% | |
| GGATGGTTTAATGCGTCGTT+GGG | + | chr6_3:68556934-68556953 | Msa0957470:CDS | 45.0% | |
| !!! | TAAATTTTCAATTAAAAAAA+AGG | - | chr6_3:68555876-68555895 | None:intergenic | 5.0% |
| !!! | TAAATTTTCAATTAAAAAAA+AGG | - | chr6_3:68555876-68555895 | None:intergenic | 5.0% |
| ATGGCATGCCCTAATAGAGC+TGG | - | chr6_3:68554666-68554685 | None:intergenic | 50.0% | |
| CAATGTTCTGCAACCTCCTG+AGG | + | chr6_3:68555092-68555111 | Msa0957470:CDS | 50.0% | |
| GATTCACCAACCTCATCCTC+AGG | - | chr6_3:68555111-68555130 | None:intergenic | 50.0% | |
| CAAACCTCCATCCTGCTCAT+TGG | - | chr6_3:68555475-68555494 | None:intergenic | 50.0% | |
| ! | CACTTGAGGTGCTAGCTAAG+TGG | + | chr6_3:68555590-68555609 | Msa0957470:intron | 50.0% |
| TGCTTAGTTCGAATCCCCTC+GGG | + | chr6_3:68555640-68555659 | Msa0957470:intron | 50.0% | |
| GAAATGCAGTGGCCCGTAAA+TGG | - | chr6_3:68555968-68555987 | None:intergenic | 50.0% | |
| CATTCTTCAAGCCCAGGTAC+TGG | - | chr6_3:68556062-68556081 | None:intergenic | 50.0% | |
| ATCCAACACGGTGGGTACAT+GGG | - | chr6_3:68556268-68556287 | None:intergenic | 50.0% | |
| CTGATTGTCATCCAACACGG+TGG | - | chr6_3:68556277-68556296 | None:intergenic | 50.0% | |
| CACTGGATGGAAAACCTGCA+AGG | - | chr6_3:68556323-68556342 | None:intergenic | 50.0% | |
| ! | AGGTTTTCCATCCAGTGCAG+AGG | + | chr6_3:68556326-68556345 | Msa0957470:CDS | 50.0% |
| ! | TTTTCCATCCAGTGCAGAGG+AGG | + | chr6_3:68556329-68556348 | Msa0957470:CDS | 50.0% |
| TCTTTCTTCCTCCTCTGCAC+TGG | - | chr6_3:68556340-68556359 | None:intergenic | 50.0% | |
| AATGGAGTCACTGAAGGACC+TGG | + | chr6_3:68556487-68556506 | Msa0957470:CDS | 50.0% | |
| ! | TGACTCGGAAACCGCTGAAA+TGG | - | chr6_3:68556726-68556745 | None:intergenic | 50.0% |
| TCCGAGTCAAGTCCAATTGG+GGG | + | chr6_3:68556737-68556756 | Msa0957470:CDS | 50.0% | |
| TCCCCCAATTGGACTTGACT+CGG | - | chr6_3:68556741-68556760 | None:intergenic | 50.0% | |
| AATGTGTTGTCCTGTGGCAG+GGG | - | chr6_3:68556773-68556792 | None:intergenic | 50.0% | |
| GCCGAGTCTAGCAATACAAG+CGG | + | chr6_3:68556800-68556819 | Msa0957470:CDS | 50.0% | |
| CCGCCACAGTAACTGTTGTT+AGG | + | chr6_3:68556891-68556910 | Msa0957470:CDS | 50.0% | |
| GAATCCTGCTGGCCATATCA+TGG | + | chr6_3:68556913-68556932 | Msa0957470:CDS | 50.0% | |
| ATGGCATGCCCTAATAGAGC+TGG | - | chr6_3:68554666-68554685 | None:intergenic | 50.0% | |
| CAATGTTCTGCAACCTCCTG+AGG | + | chr6_3:68555092-68555111 | Msa0957470:CDS | 50.0% | |
| GATTCACCAACCTCATCCTC+AGG | - | chr6_3:68555111-68555130 | None:intergenic | 50.0% | |
| CAAACCTCCATCCTGCTCAT+TGG | - | chr6_3:68555475-68555494 | None:intergenic | 50.0% | |
| ! | CACTTGAGGTGCTAGCTAAG+TGG | + | chr6_3:68555590-68555609 | Msa0957470:intron | 50.0% |
| TGCTTAGTTCGAATCCCCTC+GGG | + | chr6_3:68555640-68555659 | Msa0957470:intron | 50.0% | |
| GAAATGCAGTGGCCCGTAAA+TGG | - | chr6_3:68555968-68555987 | None:intergenic | 50.0% | |
| CATTCTTCAAGCCCAGGTAC+TGG | - | chr6_3:68556062-68556081 | None:intergenic | 50.0% | |
| ATCCAACACGGTGGGTACAT+GGG | - | chr6_3:68556268-68556287 | None:intergenic | 50.0% | |
| CTGATTGTCATCCAACACGG+TGG | - | chr6_3:68556277-68556296 | None:intergenic | 50.0% | |
| CACTGGATGGAAAACCTGCA+AGG | - | chr6_3:68556323-68556342 | None:intergenic | 50.0% | |
| ! | AGGTTTTCCATCCAGTGCAG+AGG | + | chr6_3:68556326-68556345 | Msa0957470:CDS | 50.0% |
| ! | TTTTCCATCCAGTGCAGAGG+AGG | + | chr6_3:68556329-68556348 | Msa0957470:CDS | 50.0% |
| TCTTTCTTCCTCCTCTGCAC+TGG | - | chr6_3:68556340-68556359 | None:intergenic | 50.0% | |
| AATGGAGTCACTGAAGGACC+TGG | + | chr6_3:68556487-68556506 | Msa0957470:CDS | 50.0% | |
| ! | TGACTCGGAAACCGCTGAAA+TGG | - | chr6_3:68556726-68556745 | None:intergenic | 50.0% |
| TCCGAGTCAAGTCCAATTGG+GGG | + | chr6_3:68556737-68556756 | Msa0957470:CDS | 50.0% | |
| TCCCCCAATTGGACTTGACT+CGG | - | chr6_3:68556741-68556760 | None:intergenic | 50.0% | |
| AATGTGTTGTCCTGTGGCAG+GGG | - | chr6_3:68556773-68556792 | None:intergenic | 50.0% | |
| GCCGAGTCTAGCAATACAAG+CGG | + | chr6_3:68556800-68556819 | Msa0957470:CDS | 50.0% | |
| CCGCCACAGTAACTGTTGTT+AGG | + | chr6_3:68556891-68556910 | Msa0957470:CDS | 50.0% | |
| GAATCCTGCTGGCCATATCA+TGG | + | chr6_3:68556913-68556932 | Msa0957470:CDS | 50.0% | |
| TCTGCAACCTCCTGAGGATG+AGG | + | chr6_3:68555098-68555117 | Msa0957470:CDS | 55.0% | |
| CAACCTCCTGAGGATGAGGT+TGG | + | chr6_3:68555102-68555121 | Msa0957470:CDS | 55.0% | |
| TCACCAACCTCATCCTCAGG+AGG | - | chr6_3:68555108-68555127 | None:intergenic | 55.0% | |
| GTTCCAAACGGCCAATGAGC+AGG | + | chr6_3:68555461-68555480 | Msa0957470:CDS | 55.0% | |
| CATCCTGCTCATTGGCCGTT+TGG | - | chr6_3:68555467-68555486 | None:intergenic | 55.0% | |
| CAAACGGCCAATGAGCAGGA+TGG | + | chr6_3:68555465-68555484 | Msa0957470:CDS | 55.0% | |
| ! | TTTTGGTCGTGGTGGTCTGG+TGG | + | chr6_3:68556009-68556028 | Msa0957470:intron | 55.0% |
| !! | AAGCCCAGGTACTGGGTAGT+AGG | - | chr6_3:68556054-68556073 | None:intergenic | 55.0% |
| GTGGGTACATGGGGACCATA+AGG | - | chr6_3:68556258-68556277 | None:intergenic | 55.0% | |
| TCCAACACGGTGGGTACATG+GGG | - | chr6_3:68556267-68556286 | None:intergenic | 55.0% | |
| CATCCAACACGGTGGGTACA+TGG | - | chr6_3:68556269-68556288 | None:intergenic | 55.0% | |
| TCTTCCTCCTCTGCACTGGA+TGG | - | chr6_3:68556336-68556355 | None:intergenic | 55.0% | |
| GCTGGTGGTTGTTCTGCCTT+CGG | - | chr6_3:68556524-68556543 | None:intergenic | 55.0% | |
| CCATCCATGATATGGCCAGC+AGG | - | chr6_3:68556920-68556939 | None:intergenic | 55.0% | |
| CCTGCTGGCCATATCATGGA+TGG | + | chr6_3:68556917-68556936 | Msa0957470:CDS | 55.0% | |
| TCTGCAACCTCCTGAGGATG+AGG | + | chr6_3:68555098-68555117 | Msa0957470:CDS | 55.0% | |
| CAACCTCCTGAGGATGAGGT+TGG | + | chr6_3:68555102-68555121 | Msa0957470:CDS | 55.0% | |
| TCACCAACCTCATCCTCAGG+AGG | - | chr6_3:68555108-68555127 | None:intergenic | 55.0% | |
| GTTCCAAACGGCCAATGAGC+AGG | + | chr6_3:68555461-68555480 | Msa0957470:CDS | 55.0% | |
| CATCCTGCTCATTGGCCGTT+TGG | - | chr6_3:68555467-68555486 | None:intergenic | 55.0% | |
| CAAACGGCCAATGAGCAGGA+TGG | + | chr6_3:68555465-68555484 | Msa0957470:CDS | 55.0% | |
| ! | TTTTGGTCGTGGTGGTCTGG+TGG | + | chr6_3:68556009-68556028 | Msa0957470:intron | 55.0% |
| !! | AAGCCCAGGTACTGGGTAGT+AGG | - | chr6_3:68556054-68556073 | None:intergenic | 55.0% |
| GTGGGTACATGGGGACCATA+AGG | - | chr6_3:68556258-68556277 | None:intergenic | 55.0% | |
| TCCAACACGGTGGGTACATG+GGG | - | chr6_3:68556267-68556286 | None:intergenic | 55.0% | |
| CATCCAACACGGTGGGTACA+TGG | - | chr6_3:68556269-68556288 | None:intergenic | 55.0% | |
| TCTTCCTCCTCTGCACTGGA+TGG | - | chr6_3:68556336-68556355 | None:intergenic | 55.0% | |
| GCTGGTGGTTGTTCTGCCTT+CGG | - | chr6_3:68556524-68556543 | None:intergenic | 55.0% | |
| CCATCCATGATATGGCCAGC+AGG | - | chr6_3:68556920-68556939 | None:intergenic | 55.0% | |
| CCTGCTGGCCATATCATGGA+TGG | + | chr6_3:68556917-68556936 | Msa0957470:CDS | 55.0% | |
| ACGGCCAATGAGCAGGATGG+AGG | + | chr6_3:68555468-68555487 | Msa0957470:CDS | 60.0% | |
| AGTTCGAATCCCCTCGGGAG+TGG | + | chr6_3:68555645-68555664 | Msa0957470:intron | 60.0% | |
| TCCCCATGTACCCACCGTGT+TGG | + | chr6_3:68556263-68556282 | Msa0957470:CDS | 60.0% | |
| ACGGCCAATGAGCAGGATGG+AGG | + | chr6_3:68555468-68555487 | Msa0957470:CDS | 60.0% | |
| AGTTCGAATCCCCTCGGGAG+TGG | + | chr6_3:68555645-68555664 | Msa0957470:intron | 60.0% | |
| TCCCCATGTACCCACCGTGT+TGG | + | chr6_3:68556263-68556282 | Msa0957470:CDS | 60.0% | |
| GGTGGCTGGGTTCCCCCAAT+TGG | - | chr6_3:68556752-68556771 | None:intergenic | 65.0% | |
| GTGTTGTCCTGTGGCAGGGG+TGG | - | chr6_3:68556770-68556789 | None:intergenic | 65.0% | |
| GGTGGCTGGGTTCCCCCAAT+TGG | - | chr6_3:68556752-68556771 | None:intergenic | 65.0% | |
| GTGTTGTCCTGTGGCAGGGG+TGG | - | chr6_3:68556770-68556789 | None:intergenic | 65.0% | |
| AACCCAGCCACCCCTGCCAC+AGG | + | chr6_3:68556760-68556779 | Msa0957470:CDS | 70.0% | |
| GTCCTGTGGCAGGGGTGGCT+GGG | - | chr6_3:68556765-68556784 | None:intergenic | 70.0% | |
| TGTCCTGTGGCAGGGGTGGC+TGG | - | chr6_3:68556766-68556785 | None:intergenic | 70.0% | |
| AACCCAGCCACCCCTGCCAC+AGG | + | chr6_3:68556760-68556779 | Msa0957470:CDS | 70.0% | |
| GTCCTGTGGCAGGGGTGGCT+GGG | - | chr6_3:68556765-68556784 | None:intergenic | 70.0% | |
| TGTCCTGTGGCAGGGGTGGC+TGG | - | chr6_3:68556766-68556785 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 68554594 | 68556991 | 68554594 | ID=Msa0957470;Name=Msa0957470 |
| chr6_3 | mRNA | 68554594 | 68556991 | 68554594 | ID=Msa0957470-mRNA-1;Parent=Msa0957470;Name=Msa0957470-mRNA-1;_AED=0.08;_eAED=0.16;_QI=0|0.2|0|1|1|1|6|0|426 |
| chr6_3 | exon | 68554594 | 68554740 | 68554594 | ID=Msa0957470-mRNA-1:exon:12586;Parent=Msa0957470-mRNA-1 |
| chr6_3 | exon | 68555006 | 68555164 | 68555006 | ID=Msa0957470-mRNA-1:exon:12587;Parent=Msa0957470-mRNA-1 |
| chr6_3 | exon | 68555256 | 68555489 | 68555256 | ID=Msa0957470-mRNA-1:exon:12588;Parent=Msa0957470-mRNA-1 |
| chr6_3 | exon | 68555813 | 68555857 | 68555813 | ID=Msa0957470-mRNA-1:exon:12589;Parent=Msa0957470-mRNA-1 |
| chr6_3 | exon | 68556186 | 68556359 | 68556186 | ID=Msa0957470-mRNA-1:exon:12590;Parent=Msa0957470-mRNA-1 |
| chr6_3 | exon | 68556470 | 68556991 | 68556470 | ID=Msa0957470-mRNA-1:exon:12591;Parent=Msa0957470-mRNA-1 |
| chr6_3 | CDS | 68554594 | 68554740 | 68554594 | ID=Msa0957470-mRNA-1:cds;Parent=Msa0957470-mRNA-1 |
| chr6_3 | CDS | 68555006 | 68555164 | 68555006 | ID=Msa0957470-mRNA-1:cds;Parent=Msa0957470-mRNA-1 |
| chr6_3 | CDS | 68555256 | 68555489 | 68555256 | ID=Msa0957470-mRNA-1:cds;Parent=Msa0957470-mRNA-1 |
| chr6_3 | CDS | 68555813 | 68555857 | 68555813 | ID=Msa0957470-mRNA-1:cds;Parent=Msa0957470-mRNA-1 |
| chr6_3 | CDS | 68556186 | 68556359 | 68556186 | ID=Msa0957470-mRNA-1:cds;Parent=Msa0957470-mRNA-1 |
| chr6_3 | CDS | 68556470 | 68556991 | 68556470 | ID=Msa0957470-mRNA-1:cds;Parent=Msa0957470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
