Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957450 | XP_024637690.1 | 85.227 | 352 | 19 | 2 | 12 | 362 | 213 | 532 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957450 | A0A072URA5 | 84.943 | 352 | 18 | 2 | 12 | 362 | 213 | 530 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027580 | Msa0957450 | -0.819273 | 1.266458e-52 | -8.615850e-47 |
| Msa0029260 | Msa0957450 | -0.806667 | 7.359428e-50 | -8.615850e-47 |
| Msa0036370 | Msa0957450 | -0.819680 | 1.022853e-52 | -8.615850e-47 |
| Msa0072170 | Msa0957450 | -0.801342 | 9.420630e-49 | -8.615850e-47 |
| Msa0075340 | Msa0957450 | -0.821048 | 4.967645e-53 | -8.615850e-47 |
| Msa0078000 | Msa0957450 | 0.803843 | 2.872237e-49 | -8.615850e-47 |
| Msa0094010 | Msa0957450 | -0.809908 | 1.499761e-50 | -8.615850e-47 |
| Msa0111330 | Msa0957450 | -0.801226 | 9.952129e-49 | -8.615850e-47 |
| Msa0603840 | Msa0957450 | 0.840636 | 7.717845e-58 | -8.615850e-47 |
| Msa0607290 | Msa0957450 | 0.801041 | 1.085583e-48 | -8.615850e-47 |
| Msa0609970 | Msa0957450 | -0.821886 | 3.180288e-53 | -8.615850e-47 |
| Msa0610390 | Msa0957450 | -0.811381 | 7.204706e-51 | -8.615850e-47 |
| Msa0614990 | Msa0957450 | -0.833109 | 6.439584e-56 | -8.615850e-47 |
| Msa0615680 | Msa0957450 | -0.808386 | 3.176892e-50 | -8.615850e-47 |
| Msa0617260 | Msa0957450 | -0.805731 | 1.158859e-49 | -8.615850e-47 |
| Msa0618200 | Msa0957450 | 0.833475 | 5.222036e-56 | -8.615850e-47 |
| Msa0625790 | Msa0957450 | -0.802060 | 6.710886e-49 | -8.615850e-47 |
| Msa0626680 | Msa0957450 | -0.805605 | 1.231325e-49 | -8.615850e-47 |
| Msa0659140 | Msa0957450 | -0.827898 | 1.213025e-54 | -8.615850e-47 |
| Msa0663510 | Msa0957450 | -0.834676 | 2.611119e-56 | -8.615850e-47 |
| Msa0663900 | Msa0957450 | -0.804417 | 2.181912e-49 | -8.615850e-47 |
| Msa0664760 | Msa0957450 | -0.833001 | 6.850654e-56 | -8.615850e-47 |
| Msa0666230 | Msa0957450 | -0.807346 | 5.287074e-50 | -8.615850e-47 |
| Msa0687230 | Msa0957450 | -0.849728 | 2.684116e-60 | -8.615850e-47 |
| Msa0687630 | Msa0957450 | -0.806299 | 8.798657e-50 | -8.615850e-47 |
| Msa0699190 | Msa0957450 | -0.802536 | 5.354090e-49 | -8.615850e-47 |
| Msa0705600 | Msa0957450 | -0.811025 | 8.606812e-51 | -8.615850e-47 |
| Msa0707390 | Msa0957450 | -0.827629 | 1.407391e-54 | -8.615850e-47 |
| Msa0712310 | Msa0957450 | -0.806919 | 6.509418e-50 | -8.615850e-47 |
| Msa0718740 | Msa0957450 | -0.802501 | 5.445183e-49 | -8.615850e-47 |
| Msa0735310 | Msa0957450 | -0.809349 | 1.977403e-50 | -8.615850e-47 |
| Msa0742510 | Msa0957450 | -0.803863 | 2.845944e-49 | -8.615850e-47 |
| Msa0744090 | Msa0957450 | -0.817399 | 3.365134e-52 | -8.615850e-47 |
| Msa0751010 | Msa0957450 | -0.803482 | 3.413713e-49 | -8.615850e-47 |
| Msa0766670 | Msa0957450 | -0.814659 | 1.376307e-51 | -8.615850e-47 |
| Msa0794050 | Msa0957450 | -0.830878 | 2.291967e-55 | -8.615850e-47 |
| Msa0797750 | Msa0957450 | -0.808337 | 3.254413e-50 | -8.615850e-47 |
| Msa0814250 | Msa0957450 | -0.832354 | 9.917106e-56 | -8.615850e-47 |
| Msa0814630 | Msa0957450 | 0.815820 | 7.601548e-52 | -8.615850e-47 |
| Msa0818770 | Msa0957450 | -0.833997 | 3.865591e-56 | -8.615850e-47 |
| Msa0820530 | Msa0957450 | 0.825056 | 5.770091e-54 | -8.615850e-47 |
| Msa0824640 | Msa0957450 | -0.805663 | 1.197252e-49 | -8.615850e-47 |
| Msa0825280 | Msa0957450 | -0.816867 | 4.430772e-52 | -8.615850e-47 |
| Msa0826500 | Msa0957450 | -0.818408 | 1.991415e-52 | -8.615850e-47 |
| Msa0830990 | Msa0957450 | -0.806609 | 7.569143e-50 | -8.615850e-47 |
| Msa0127040 | Msa0957450 | -0.801981 | 6.967711e-49 | -8.615850e-47 |
| Msa0165950 | Msa0957450 | -0.801979 | 6.973110e-49 | -8.615850e-47 |
| Msa0166750 | Msa0957450 | -0.817191 | 3.747689e-52 | -8.615850e-47 |
| Msa0167480 | Msa0957450 | -0.805181 | 1.511133e-49 | -8.615850e-47 |
| Msa0169300 | Msa0957450 | -0.801913 | 7.195558e-49 | -8.615850e-47 |
| Msa0183460 | Msa0957450 | -0.825626 | 4.231355e-54 | -8.615850e-47 |
| Msa0193600 | Msa0957450 | -0.805039 | 1.618390e-49 | -8.615850e-47 |
| Msa0212750 | Msa0957450 | 0.822927 | 1.823194e-53 | -8.615850e-47 |
| Msa0219250 | Msa0957450 | 0.838155 | 3.402047e-57 | -8.615850e-47 |
| Msa0227310 | Msa0957450 | 0.824413 | 8.181280e-54 | -8.615850e-47 |
| Msa0236270 | Msa0957450 | -0.802031 | 6.803545e-49 | -8.615850e-47 |
| Msa0370160 | Msa0957450 | 0.845463 | 3.997378e-59 | -8.615850e-47 |
| Msa0387910 | Msa0957450 | -0.815134 | 1.079870e-51 | -8.615850e-47 |
| Msa0417610 | Msa0957450 | 0.801730 | 7.844428e-49 | -8.615850e-47 |
| Msa0419520 | Msa0957450 | -0.817224 | 3.684674e-52 | -8.615850e-47 |
| Msa0419640 | Msa0957450 | 0.812933 | 3.303943e-51 | -8.615850e-47 |
| Msa0421260 | Msa0957450 | -0.808298 | 3.317394e-50 | -8.615850e-47 |
| Msa0429210 | Msa0957450 | -0.806103 | 9.677823e-50 | -8.615850e-47 |
| Msa0431770 | Msa0957450 | -0.820092 | 8.234562e-53 | -8.615850e-47 |
| Msa0434720 | Msa0957450 | 0.800477 | 1.415191e-48 | -8.615850e-47 |
| Msa0436200 | Msa0957450 | -0.841319 | 5.108680e-58 | -8.615850e-47 |
| Msa0437690 | Msa0957450 | 0.828515 | 8.614014e-55 | -8.615850e-47 |
| Msa0443390 | Msa0957450 | -0.812751 | 3.620386e-51 | -8.615850e-47 |
| Msa0449820 | Msa0957450 | -0.835085 | 2.059688e-56 | -8.615850e-47 |
| Msa0469910 | Msa0957450 | 0.803452 | 3.463318e-49 | -8.615850e-47 |
| Msa0478580 | Msa0957450 | -0.808623 | 2.827507e-50 | -8.615850e-47 |
| Msa0258880 | Msa0957450 | 0.833244 | 5.960687e-56 | -8.615850e-47 |
| Msa0259160 | Msa0957450 | -0.817658 | 2.942173e-52 | -8.615850e-47 |
| Msa0262480 | Msa0957450 | -0.816462 | 5.462398e-52 | -8.615850e-47 |
| Msa0273650 | Msa0957450 | -0.802284 | 6.034715e-49 | -8.615850e-47 |
| Msa0275400 | Msa0957450 | 0.801229 | 9.937627e-49 | -8.615850e-47 |
| Msa0280430 | Msa0957450 | -0.801457 | 8.924916e-49 | -8.615850e-47 |
| Msa0300350 | Msa0957450 | -0.812643 | 3.823466e-51 | -8.615850e-47 |
| Msa0301870 | Msa0957450 | -0.812420 | 4.277431e-51 | -8.615850e-47 |
| Msa0304590 | Msa0957450 | -0.809410 | 1.918378e-50 | -8.615850e-47 |
| Msa0304660 | Msa0957450 | -0.819370 | 1.203635e-52 | -8.615850e-47 |
| Msa0331700 | Msa0957450 | -0.818264 | 2.146164e-52 | -8.615850e-47 |
| Msa0335320 | Msa0957450 | 0.823356 | 1.447493e-53 | -8.615850e-47 |
| Msa0347240 | Msa0957450 | -0.810966 | 8.863494e-51 | -8.615850e-47 |
| Msa0484290 | Msa0957450 | -0.815309 | 9.873557e-52 | -8.615850e-47 |
| Msa0493920 | Msa0957450 | -0.805754 | 1.146020e-49 | -8.615850e-47 |
| Msa0509950 | Msa0957450 | 0.826373 | 2.811978e-54 | -8.615850e-47 |
| Msa0518960 | Msa0957450 | -0.805909 | 1.063064e-49 | -8.615850e-47 |
| Msa0524590 | Msa0957450 | -0.822660 | 2.103783e-53 | -8.615850e-47 |
| Msa0525340 | Msa0957450 | -0.818299 | 2.107072e-52 | -8.615850e-47 |
| Msa0534080 | Msa0957450 | -0.805376 | 1.375153e-49 | -8.615850e-47 |
| Msa0536790 | Msa0957450 | -0.825165 | 5.437801e-54 | -8.615850e-47 |
| Msa0548880 | Msa0957450 | 0.828924 | 6.858426e-55 | -8.615850e-47 |
| Msa0565620 | Msa0957450 | 0.806392 | 8.409562e-50 | -8.615850e-47 |
| Msa0578090 | Msa0957450 | -0.851213 | 1.027568e-60 | -8.615850e-47 |
| Msa0579370 | Msa0957450 | -0.825371 | 4.861448e-54 | -8.615850e-47 |
| Msa0586850 | Msa0957450 | -0.842042 | 3.292860e-58 | -8.615850e-47 |
| Msa0851470 | Msa0957450 | -0.805827 | 1.106101e-49 | -8.615850e-47 |
| Msa0864010 | Msa0957450 | -0.800129 | 1.665949e-48 | -8.615850e-47 |
| Msa0869010 | Msa0957450 | -0.819884 | 9.188483e-53 | -8.615850e-47 |
| Msa0905990 | Msa0957450 | -0.809295 | 2.031160e-50 | -8.615850e-47 |
| Msa0921870 | Msa0957450 | -0.813916 | 2.009353e-51 | -8.615850e-47 |
| Msa0924150 | Msa0957450 | 0.812165 | 4.864123e-51 | -8.615850e-47 |
| Msa0947530 | Msa0957450 | 0.835132 | 2.004694e-56 | -8.615850e-47 |
| Msa0957450 | Msa0957470 | 0.964833 | 7.916736e-124 | -8.615850e-47 |
| Msa0957450 | Msa0960830 | -0.839967 | 1.154063e-57 | -8.615850e-47 |
| Msa0957450 | Msa0966720 | 0.824024 | 1.009984e-53 | -8.615850e-47 |
| Msa0957450 | Msa0974810 | -0.829041 | 6.424347e-55 | -8.615850e-47 |
| Msa0957450 | Msa0994290 | -0.808400 | 3.155892e-50 | -8.615850e-47 |
| Msa0957450 | Msa1008060 | 0.815565 | 8.661471e-52 | -8.615850e-47 |
| Msa0957450 | Msa1019240 | -0.810456 | 1.142663e-50 | -8.615850e-47 |
| Msa0957450 | Msa1025940 | -0.801987 | 6.947642e-49 | -8.615850e-47 |
| Msa0957450 | Msa1030930 | -0.818078 | 2.364239e-52 | -8.615850e-47 |
| Msa0957450 | Msa1049510 | 0.812889 | 3.378246e-51 | -8.615850e-47 |
| Msa0957450 | Msa1069660 | 0.818613 | 1.788986e-52 | -8.615850e-47 |
| Msa0957450 | Msa1070050 | -0.812536 | 4.034776e-51 | -8.615850e-47 |
| Msa0957450 | Msa1070390 | -0.808652 | 2.787856e-50 | -8.615850e-47 |
| Msa0957450 | Msa1071660 | -0.807145 | 5.830359e-50 | -8.615850e-47 |
| Msa0957450 | Msa1073400 | -0.808095 | 3.664372e-50 | -8.615850e-47 |
| Msa0957450 | Msa1087510 | 0.821036 | 4.997594e-53 | -8.615850e-47 |
| Msa0957450 | Msa1098720 | 0.815459 | 9.144074e-52 | -8.615850e-47 |
| Msa0957450 | Msa1104210 | -0.802983 | 4.329769e-49 | -8.615850e-47 |
| Msa0957450 | Msa1126120 | 0.832624 | 8.498350e-56 | -8.615850e-47 |
| Msa0957450 | Msa1126850 | -0.833000 | 6.855855e-56 | -8.615850e-47 |
| Msa0957450 | Msa1128990 | -0.853927 | 1.728424e-61 | -8.615850e-47 |
| Msa0957450 | Msa1166870 | -0.822164 | 2.741718e-53 | -8.615850e-47 |
| Msa0957450 | Msa1171770 | 0.834364 | 3.128602e-56 | -8.615850e-47 |
| Msa0957450 | Msa1192850 | -0.839827 | 1.255064e-57 | -8.615850e-47 |
| Msa0957450 | Msa1193950 | 0.811835 | 5.739278e-51 | -8.615850e-47 |
| Msa0957450 | Msa1201830 | -0.807751 | 4.337387e-50 | -8.615850e-47 |
| Msa0957450 | Msa1202580 | -0.807392 | 5.168766e-50 | -8.615850e-47 |
| Msa0957450 | Msa1211050 | 0.843625 | 1.249237e-58 | -8.615850e-47 |
| Msa0957450 | Msa1213770 | -0.829287 | 5.602057e-55 | -8.615850e-47 |
| Msa0957450 | Msa1227690 | -0.822531 | 2.253590e-53 | -8.615850e-47 |
| Msa0957450 | Msa1234980 | -0.803707 | 3.065238e-49 | -8.615850e-47 |
| Msa0957450 | Msa1246530 | 0.834322 | 3.204640e-56 | -8.615850e-47 |
| Msa0957450 | Msa1253400 | -0.800216 | 1.599090e-48 | -8.615850e-47 |
| Msa0957450 | Msa1253810 | -0.826834 | 2.182490e-54 | -8.615850e-47 |
| Msa0957450 | Msa1294840 | -0.807278 | 5.465387e-50 | -8.615850e-47 |
| Msa0957450 | Msa1296300 | -0.820176 | 7.877213e-53 | -8.615850e-47 |
| Msa0957450 | Msa1296830 | -0.807409 | 5.126995e-50 | -8.615850e-47 |
| Msa0957450 | Msa1299360 | -0.810833 | 9.467938e-51 | -8.615850e-47 |
| Msa0957450 | Msa1310690 | -0.818490 | 1.908076e-52 | -8.615850e-47 |
| Msa0957450 | Msa1327490 | -0.835508 | 1.611039e-56 | -8.615850e-47 |
| Msa0957450 | Msa1338610 | -0.806903 | 6.562636e-50 | -8.615850e-47 |
| Msa0957450 | Msa1341070 | -0.808915 | 2.449026e-50 | -8.615850e-47 |
| Msa0957450 | Msa1345450 | -0.808474 | 3.042284e-50 | -8.615850e-47 |
| Msa0957450 | Msa1349570 | -0.800783 | 1.225749e-48 | -8.615850e-47 |
| Msa0957450 | Msa1363700 | -0.800149 | 1.649966e-48 | -8.615850e-47 |
| Msa0957450 | Msa1365150 | -0.810758 | 9.828893e-51 | -8.615850e-47 |
| Msa0957450 | Msa1369190 | -0.807754 | 4.331150e-50 | -8.615850e-47 |
| Msa0957450 | Msa1372310 | -0.811073 | 8.402729e-51 | -8.615850e-47 |
| Msa0957450 | Msa1382970 | 0.810617 | 1.054611e-50 | -8.615850e-47 |
| Msa0957450 | Msa1393800 | -0.805221 | 1.482057e-49 | -8.615850e-47 |
| Msa0957450 | Msa1397940 | -0.815216 | 1.035543e-51 | -8.615850e-47 |
| Msa0957450 | Msa1400820 | -0.822943 | 1.807246e-53 | -8.615850e-47 |
| Msa0957450 | Msa1404190 | -0.811804 | 5.827642e-51 | -8.615850e-47 |
| Msa0957450 | Msa1438450 | -0.803757 | 2.993190e-49 | -8.615850e-47 |
| Msa0957450 | Msa1438640 | -0.832929 | 7.141082e-56 | -8.615850e-47 |
| Msa0957450 | Msa1442220 | 0.803782 | 2.958267e-49 | -8.615850e-47 |
| Msa0957450 | Msa1465480 | -0.800229 | 1.589770e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957450 | MtrunA17_Chr4g0065931 | 93.434 | 198 | 11 | 2 | 176 | 371 | 1 | 198 | 2.05e-122 | 354 |
| Msa0957450 | MtrunA17_Chr2g0287221 | 57.012 | 328 | 82 | 5 | 12 | 338 | 213 | 482 | 4.12e-110 | 334 |
| Msa0957450 | MtrunA17_Chr4g0065941 | 92.424 | 132 | 10 | 0 | 12 | 143 | 213 | 344 | 8.72e-86 | 265 |
| Msa0957450 | MtrunA17_Chr4g0076631 | 60.465 | 86 | 31 | 1 | 12 | 94 | 214 | 299 | 1.42e-28 | 117 |
| Msa0957450 | MtrunA17_Chr2g0291031 | 65.753 | 73 | 25 | 0 | 12 | 84 | 214 | 286 | 8.31e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957450 | AT4G14290.4 | 54.074 | 270 | 86 | 4 | 12 | 280 | 63 | 295 | 2.19e-88 | 273 |
| Msa0957450 | AT4G14290.3 | 54.074 | 270 | 86 | 4 | 12 | 280 | 98 | 330 | 1.17e-87 | 273 |
| Msa0957450 | AT3G23540.2 | 51.613 | 279 | 94 | 3 | 12 | 286 | 70 | 311 | 1.50e-87 | 272 |
| Msa0957450 | AT4G14290.5 | 54.074 | 270 | 86 | 4 | 12 | 280 | 159 | 391 | 6.60e-87 | 273 |
| Msa0957450 | AT4G14290.2 | 52.797 | 286 | 95 | 5 | 12 | 294 | 213 | 461 | 1.95e-86 | 272 |
| Msa0957450 | AT4G14290.1 | 54.074 | 270 | 86 | 4 | 12 | 280 | 213 | 445 | 4.83e-86 | 272 |
| Msa0957450 | AT3G23540.3 | 51.613 | 279 | 94 | 3 | 12 | 286 | 186 | 427 | 1.22e-85 | 270 |
| Msa0957450 | AT3G23540.1 | 51.613 | 279 | 94 | 3 | 12 | 286 | 213 | 454 | 3.86e-85 | 270 |
| Msa0957450 | AT4G17150.5 | 61.972 | 71 | 27 | 0 | 12 | 82 | 199 | 269 | 7.59e-24 | 103 |
| Msa0957450 | AT4G17150.3 | 61.972 | 71 | 27 | 0 | 12 | 82 | 223 | 293 | 1.15e-23 | 102 |
| Msa0957450 | AT4G17150.2 | 61.972 | 71 | 27 | 0 | 12 | 82 | 223 | 293 | 1.15e-23 | 102 |
| Msa0957450 | AT4G17150.1 | 61.972 | 71 | 27 | 0 | 12 | 82 | 223 | 293 | 1.20e-23 | 103 |
| Msa0957450 | AT4G17150.4 | 61.972 | 71 | 27 | 0 | 12 | 82 | 223 | 293 | 1.29e-23 | 102 |
Find 95 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCCTGTGGCAGGGGTGGC+TGG | 0.145025 | 6_3:-68518188 | None:intergenic |
| TCATTATTTGTTTGCATTGC+AGG | 0.250710 | 6_3:+68516045 | Msa0957450:CDS |
| GAAGAAATAATTAAGAAATT+AGG | 0.264015 | 6_3:-68516756 | None:intergenic |
| GTTTCCGAGTCAAGTCAAAT+TGG | 0.297308 | 6_3:+68518159 | Msa0957450:CDS |
| TTACCGAAGTAATCATTTAC+AGG | 0.307741 | 6_3:-68516566 | None:intergenic |
| CAGTACTGTAGATGCTATTA+AGG | 0.316481 | 6_3:+68516857 | Msa0957450:CDS |
| CATCCTGCTCATTGGCCGTT+TGG | 0.334399 | 6_3:-68516889 | None:intergenic |
| TTGTCAGATGGTCATCCTTA+TGG | 0.348703 | 6_3:+68517665 | Msa0957450:CDS |
| GTCCTGTGGCAGGGGTGGCT+GGG | 0.361215 | 6_3:-68518187 | None:intergenic |
| TCTTTCTTCCTCCTCTGCAC+TGG | 0.372065 | 6_3:-68517762 | None:intergenic |
| GTATGATATTCAGATGTTAA+TGG | 0.372335 | 6_3:+68517882 | Msa0957450:intron |
| TTTCCGAGTCAAGTCAAATT+GGG | 0.375214 | 6_3:+68518160 | Msa0957450:CDS |
| TGGAGATCTGTGCACGAATT+AGG | 0.376826 | 6_3:+68516687 | Msa0957450:CDS |
| GCTGGTGGTTGTTCTGCCTT+CGG | 0.399267 | 6_3:-68517946 | None:intergenic |
| TTCTTCTGATGCAATGGAAA+TGG | 0.401054 | 6_3:-68518097 | None:intergenic |
| TATCAACTTGAAGACCTTGC+AGG | 0.403667 | 6_3:+68517731 | Msa0957450:CDS |
| CATCCAACACGGTGGGTACA+TGG | 0.408172 | 6_3:-68517691 | None:intergenic |
| TCTGTATCTAACAAATAAAC+AGG | 0.417673 | 6_3:-68516822 | None:intergenic |
| TAATTAAGAAATTAGGTACT+TGG | 0.425318 | 6_3:-68516749 | None:intergenic |
| TGACTCGGAAACCGCTGAAA+TGG | 0.436142 | 6_3:-68518148 | None:intergenic |
| TCACTCTGATCGTATATTTG+AGG | 0.447447 | 6_3:+68516135 | Msa0957450:CDS |
| GGAAGGAAGAGGAGATATGT+TGG | 0.451642 | 6_3:+68518518 | Msa0957450:CDS |
| TGATGGTGTTGGAGGGAGGA+AGG | 0.453041 | 6_3:+68518501 | Msa0957450:CDS |
| TGTTGGAGGGAGGAAGGAAG+AGG | 0.458000 | 6_3:+68518507 | Msa0957450:CDS |
| ATAATGTGTTGTCCTGTGGC+AGG | 0.463595 | 6_3:-68518197 | None:intergenic |
| AACCCAGCCACCCCTGCCAC+AGG | 0.466505 | 6_3:+68518185 | Msa0957450:CDS |
| TCGTATATTTGAGGCTTACA+TGG | 0.472947 | 6_3:+68516144 | Msa0957450:CDS |
| CAAACCTCCATCCTGCTCAT+TGG | 0.479086 | 6_3:-68516897 | None:intergenic |
| TCTTCCTCCTCTGCACTGGA+TGG | 0.479687 | 6_3:-68517758 | None:intergenic |
| TCTACAGTACTGCTAGTTGA+TGG | 0.481450 | 6_3:-68516846 | None:intergenic |
| TTGAAGAAGCAGTGGGATGA+TGG | 0.482912 | 6_3:+68518484 | Msa0957450:intron |
| CAAATAATGAAAGAATATGA+TGG | 0.484919 | 6_3:-68516032 | None:intergenic |
| GTGGGTACATGGGGACCATA+AGG | 0.484951 | 6_3:-68517680 | None:intergenic |
| GATGTTAATGGAAGCAGTAA+TGG | 0.488225 | 6_3:+68517894 | Msa0957450:intron |
| GTTCCAAACGGCCAATGAGC+AGG | 0.490303 | 6_3:+68516886 | Msa0957450:CDS |
| CAGTGGGATGATGGTGTTGG+AGG | 0.491191 | 6_3:+68518493 | Msa0957450:CDS |
| TGACAATTCAAAGCTTATCA+TGG | 0.492892 | 6_3:-68517648 | None:intergenic |
| AATGTGTTGTCCTGTGGCAG+GGG | 0.499356 | 6_3:-68518195 | None:intergenic |
| CAAATATACGATCAGAGTGA+TGG | 0.507653 | 6_3:-68516132 | None:intergenic |
| ATCCAACACGGTGGGTACAT+GGG | 0.517832 | 6_3:-68517690 | None:intergenic |
| TTGTATAAAATCATCGTCAA+TGG | 0.519139 | 6_3:-68516107 | None:intergenic |
| TACAGATTCTTCTGATGCAA+TGG | 0.524140 | 6_3:-68518103 | None:intergenic |
| AAATATACGATCAGAGTGAT+GGG | 0.528350 | 6_3:-68516131 | None:intergenic |
| AAGCAGTGGGATGATGGTGT+TGG | 0.536824 | 6_3:+68518490 | Msa0957450:CDS |
| TAATGTGTTGTCCTGTGGCA+GGG | 0.537316 | 6_3:-68518196 | None:intergenic |
| ATGGCATGCCCTAATAGAGC+TGG | 0.538904 | 6_3:-68516088 | None:intergenic |
| TCTGCAACCTCCTGAGGATG+AGG | 0.539377 | 6_3:+68516523 | Msa0957450:CDS |
| TGTAAATGATTACTTCGGTA+AGG | 0.540682 | 6_3:+68516568 | Msa0957450:CDS |
| GATTCACCAACCTCATCCTC+AGG | 0.541847 | 6_3:-68516533 | None:intergenic |
| AAATAATGAAAGAATATGAT+GGG | 0.547238 | 6_3:-68516031 | None:intergenic |
| AGTGGGATGATGGTGTTGGA+GGG | 0.547410 | 6_3:+68518494 | Msa0957450:CDS |
| AGATGAACAAAGTGTTAATG+AGG | 0.548504 | 6_3:+68517261 | Msa0957450:CDS |
| TATCATGGATGAAGAGGGTG+GGG | 0.549659 | 6_3:-68517633 | None:intergenic |
| CAATGTTCTGCAACCTCCTG+AGG | 0.553134 | 6_3:+68516517 | Msa0957450:CDS |
| GACTCTTTACTCAGGATGCA+TGG | 0.555592 | 6_3:+68516667 | Msa0957450:intron |
| GGGATGATGGTGTTGGAGGG+AGG | 0.557422 | 6_3:+68518497 | Msa0957450:CDS |
| ATCTAACAAATAAACAGGTA+AGG | 0.567059 | 6_3:-68516817 | None:intergenic |
| TGTGAGTCATCTTTATCTGA+TGG | 0.570709 | 6_3:-68517997 | None:intergenic |
| GTGTTGTCCTGTGGCAGGGG+TGG | 0.571540 | 6_3:-68518192 | None:intergenic |
| TTCCGAGTCAAGTCAAATTG+GGG | 0.573339 | 6_3:+68518161 | Msa0957450:CDS |
| CAACCTCCTGAGGATGAGGT+TGG | 0.573360 | 6_3:+68516527 | Msa0957450:CDS |
| ACATTAGCAATACTACTGGC+TGG | 0.577814 | 6_3:-68517964 | None:intergenic |
| AAAGCTTATCATGGATGAAG+AGG | 0.577943 | 6_3:-68517639 | None:intergenic |
| ATAAGCTTTGAATTGTCAGA+TGG | 0.579614 | 6_3:+68517653 | Msa0957450:CDS |
| AATGGAGTCACTGAAGGACC+TGG | 0.585649 | 6_3:+68517912 | Msa0957450:CDS |
| GAGGAGAAGAGAGAAATCAC+AGG | 0.587751 | 6_3:+68518554 | Msa0957450:CDS |
| TCAAAGTAAAACTGAGGACG+TGG | 0.589417 | 6_3:-68516473 | None:intergenic |
| AGATGACTCACATTCTTCAC+AGG | 0.589430 | 6_3:+68518008 | Msa0957450:CDS |
| TCCAACACGGTGGGTACATG+GGG | 0.595552 | 6_3:-68517689 | None:intergenic |
| TTATCATGGATGAAGAGGGT+GGG | 0.596440 | 6_3:-68517634 | None:intergenic |
| CAAACGGCCAATGAGCAGGA+TGG | 0.600542 | 6_3:+68516890 | Msa0957450:CDS |
| CACTGGATGGAAAACCTGCA+AGG | 0.604166 | 6_3:-68517745 | None:intergenic |
| TTAAGGAAGTCAGTTCCAAA+CGG | 0.604253 | 6_3:+68516874 | Msa0957450:CDS |
| GACCCTGTAAATGATTACTT+CGG | 0.604489 | 6_3:+68516563 | Msa0957450:CDS |
| AGATACATTAGCAATACTAC+TGG | 0.612355 | 6_3:-68517968 | None:intergenic |
| AGCAGTAATGGAGTCACTGA+AGG | 0.616451 | 6_3:+68517906 | Msa0957450:CDS |
| TCCCCATGTACCCACCGTGT+TGG | 0.619550 | 6_3:+68517688 | Msa0957450:CDS |
| CTTATCATGGATGAAGAGGG+TGG | 0.623493 | 6_3:-68517635 | None:intergenic |
| TCTTAATTATTTCTTCTGCG+TGG | 0.628590 | 6_3:+68516763 | Msa0957450:CDS |
| TGAGTCAAATACCATTTCAG+CGG | 0.630555 | 6_3:+68518137 | Msa0957450:CDS |
| GTTGGATGACAATCAGTATG+TGG | 0.637267 | 6_3:+68517706 | Msa0957450:CDS |
| TACCGAAGTAATCATTTACA+GGG | 0.638334 | 6_3:-68516565 | None:intergenic |
| AAGCTTATCATGGATGAAGA+GGG | 0.643532 | 6_3:-68517638 | None:intergenic |
| ACGGCCAATGAGCAGGATGG+AGG | 0.644801 | 6_3:+68516893 | Msa0957450:CDS |
| CCTGGAAGTACAAAATCCGA+AGG | 0.656273 | 6_3:+68517930 | Msa0957450:CDS |
| ACGGATAATGTGTTGTCCTG+TGG | 0.664488 | 6_3:-68518201 | None:intergenic |
| ATGGAATCAAAGTAAAACTG+AGG | 0.668425 | 6_3:-68516479 | None:intergenic |
| TGATTGTCATCCAACACGGT+GGG | 0.675098 | 6_3:-68517698 | None:intergenic |
| AATATACGATCAGAGTGATG+GGG | 0.677083 | 6_3:-68516130 | None:intergenic |
| TCACCAACCTCATCCTCAGG+AGG | 0.681966 | 6_3:-68516530 | None:intergenic |
| TCCGAGTCAAGTCAAATTGG+GGG | 0.694971 | 6_3:+68518162 | Msa0957450:CDS |
| TGCAAGCAGGAAGAGAAGTG+TGG | 0.700363 | 6_3:+68517602 | Msa0957450:intron |
| CTGATTGTCATCCAACACGG+TGG | 0.711872 | 6_3:-68517699 | None:intergenic |
| ATACTGATTGTCATCCAACA+CGG | 0.712282 | 6_3:-68517702 | None:intergenic |
| TTAGCAATACTACTGGCTGG+TGG | 0.719984 | 6_3:-68517961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCATTTTTTATAGAAAA+AGG | - | chr6_3:68516190-68516209 | None:intergenic | 10.0% |
| !! | AAAAACATAATTAAATTTGA+GGG | + | chr6_3:68516437-68516456 | Msa0957450:CDS | 10.0% |
| !!! | TTGTTTTAAATAAAAATATG+AGG | - | chr6_3:68517168-68517187 | None:intergenic | 10.0% |
| !! | AATTAAAAAAAAGGATAAAA+AGG | - | chr6_3:68517292-68517311 | None:intergenic | 10.0% |
| !! | AAATAATGAAAGAATATGAT+GGG | - | chr6_3:68516034-68516053 | None:intergenic | 15.0% |
| !!! | GACTTATTTTATAATTTTGA+AGG | - | chr6_3:68516295-68516314 | None:intergenic | 15.0% |
| !! | CAAAAACATAATTAAATTTG+AGG | + | chr6_3:68516436-68516455 | Msa0957450:CDS | 15.0% |
| !! | GAAGAAATAATTAAGAAATT+AGG | - | chr6_3:68516759-68516778 | None:intergenic | 15.0% |
| !!! | TATATTTGCTATAAGATTAT+TGG | + | chr6_3:68517352-68517371 | Msa0957450:intron | 15.0% |
| !! | TAATTCAAATATCTAACTTT+AGG | + | chr6_3:68517507-68517526 | Msa0957450:intron | 15.0% |
| !! | TAACATACATGAAAAAAAAA+AGG | + | chr6_3:68517829-68517848 | Msa0957450:intron | 15.0% |
| !! | CAAATAATGAAAGAATATGA+TGG | - | chr6_3:68516035-68516054 | None:intergenic | 20.0% |
| !! | ATTGTGAAAAAAGATGTTTA+TGG | - | chr6_3:68516501-68516520 | None:intergenic | 20.0% |
| !!! | CAGTGAAATTTTATCAAAAA+TGG | - | chr6_3:68516621-68516640 | None:intergenic | 20.0% |
| !! | TAATTAAGAAATTAGGTACT+TGG | - | chr6_3:68516752-68516771 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGAGGAGA+CGG | - | chr6_3:68517136-68517155 | None:intergenic | 20.0% |
| !!! | CGGTTTTAAATAAAAATATG+AGG | - | chr6_3:68517142-68517161 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGAGGAGA+CGG | - | chr6_3:68517136-68517155 | None:intergenic | 20.0% |
| !! | AAATTTGTATTTGAATTCTG+TGG | + | chr6_3:68517186-68517205 | Msa0957450:intron | 20.0% |
| !!! | TTTTTTCATGTATGTTAATC+AGG | - | chr6_3:68517826-68517845 | None:intergenic | 20.0% |
| !! | NNNNNNNNNNTTGCTAGACT+CGG | - | chr6_3:68518229-68518248 | None:intergenic | 20.0% |
| ! | TTGTATAAAATCATCGTCAA+TGG | - | chr6_3:68516110-68516129 | None:intergenic | 25.0% |
| ! | AAGCAACTTTAAACATCTAA+AGG | - | chr6_3:68516317-68516336 | None:intergenic | 25.0% |
| ! | AGTACAATAGAAATATCTAG+AGG | - | chr6_3:68516346-68516365 | None:intergenic | 25.0% |
| !! | GAATCATCTTCTAAAAACAA+AGG | + | chr6_3:68516720-68516739 | Msa0957450:CDS | 25.0% |
| ! | GATTCACACAAAAATTCTAA+TGG | - | chr6_3:68516792-68516811 | None:intergenic | 25.0% |
| ! | ATCTAACAAATAAACAGGTA+AGG | - | chr6_3:68516820-68516839 | None:intergenic | 25.0% |
| ! | TCTGTATCTAACAAATAAAC+AGG | - | chr6_3:68516825-68516844 | None:intergenic | 25.0% |
| ! | ATTAGTTAATGTGATGCTAA+TGG | - | chr6_3:68517107-68517126 | None:intergenic | 25.0% |
| ! | AAATAAAAATATGAGGAGAC+GGG | - | chr6_3:68517135-68517154 | None:intergenic | 25.0% |
| !!! | TCTTTTGAAGAAATATCAGA+TGG | - | chr6_3:68517244-68517263 | None:intergenic | 25.0% |
| ! | GATTATTGGCAATTATACAA+TGG | + | chr6_3:68517366-68517385 | Msa0957450:intron | 25.0% |
| ! | ATTATACAATGGACCATTTA+CGG | + | chr6_3:68517377-68517396 | Msa0957450:intron | 25.0% |
| ! | TTGAAACTGATGAAATACTT+AGG | + | chr6_3:68517530-68517549 | Msa0957450:intron | 25.0% |
| ! | GTATGATATTCAGATGTTAA+TGG | + | chr6_3:68517882-68517901 | Msa0957450:intron | 25.0% |
| !!! | TCAAGTCTAGCTTTATAATA+AGG | + | chr6_3:68518406-68518425 | Msa0957450:intron | 25.0% |
| ! | TAAGGAAAACAAAGAAAAAG+AGG | + | chr6_3:68518424-68518443 | Msa0957450:intron | 25.0% |
| ! | ATATGTTGGAAAAAGAAAGT+AGG | + | chr6_3:68518532-68518551 | Msa0957450:CDS | 25.0% |
| TCATTATTTGTTTGCATTGC+AGG | + | chr6_3:68516045-68516064 | Msa0957450:CDS | 30.0% | |
| AAATATACGATCAGAGTGAT+GGG | - | chr6_3:68516134-68516153 | None:intergenic | 30.0% | |
| TATTAAAGATCCGTAATGCA+GGG | - | chr6_3:68516391-68516410 | None:intergenic | 30.0% | |
| ATATTAAAGATCCGTAATGC+AGG | - | chr6_3:68516392-68516411 | None:intergenic | 30.0% | |
| TGCATTACGGATCTTTAATA+TGG | + | chr6_3:68516391-68516410 | Msa0957450:intron | 30.0% | |
| GCATTACGGATCTTTAATAT+GGG | + | chr6_3:68516392-68516411 | Msa0957450:intron | 30.0% | |
| ATGGAATCAAAGTAAAACTG+AGG | - | chr6_3:68516482-68516501 | None:intergenic | 30.0% | |
| TACCGAAGTAATCATTTACA+GGG | - | chr6_3:68516568-68516587 | None:intergenic | 30.0% | |
| TTACCGAAGTAATCATTTAC+AGG | - | chr6_3:68516569-68516588 | None:intergenic | 30.0% | |
| TGTAAATGATTACTTCGGTA+AGG | + | chr6_3:68516568-68516587 | Msa0957450:CDS | 30.0% | |
| TAAAACTTGACTCTTTACTC+AGG | + | chr6_3:68516659-68516678 | Msa0957450:intron | 30.0% | |
| ! | ATCTTCTAAAAACAAAGGCA+TGG | + | chr6_3:68516725-68516744 | Msa0957450:CDS | 30.0% |
| ! | TCTTAATTATTTCTTCTGCG+TGG | + | chr6_3:68516763-68516782 | Msa0957450:CDS | 30.0% |
| TTGTATTTGAACTACACTTG+AGG | + | chr6_3:68517001-68517020 | Msa0957450:intron | 30.0% | |
| AATAAAAATATGAGGAGACG+GGG | - | chr6_3:68517134-68517153 | None:intergenic | 30.0% | |
| ! | AGATGAACAAAGTGTTAATG+AGG | + | chr6_3:68517261-68517280 | Msa0957450:CDS | 30.0% |
| TTATACAATGGACCATTTAC+GGG | + | chr6_3:68517378-68517397 | Msa0957450:intron | 30.0% | |
| TGACAATTCAAAGCTTATCA+TGG | - | chr6_3:68517651-68517670 | None:intergenic | 30.0% | |
| !! | ATAAGCTTTGAATTGTCAGA+TGG | + | chr6_3:68517653-68517672 | Msa0957450:CDS | 30.0% |
| TTTCATGTATGTTAATCAGG+TGG | - | chr6_3:68517823-68517842 | None:intergenic | 30.0% | |
| AGATACATTAGCAATACTAC+TGG | - | chr6_3:68517971-68517990 | None:intergenic | 30.0% | |
| ! | AGAGAAGATTCTTTTTGCAT+GGG | - | chr6_3:68518045-68518064 | None:intergenic | 30.0% |
| ! | TAGAGAAGATTCTTTTTGCA+TGG | - | chr6_3:68518046-68518065 | None:intergenic | 30.0% |
| CAATAATTACATGCTTGTGA+GGG | + | chr6_3:68518346-68518365 | Msa0957450:intron | 30.0% | |
| GGAATTTGAGAAAGAAATGA+AGG | + | chr6_3:68518445-68518464 | Msa0957450:intron | 30.0% | |
| ATTTGAGAAAGAAATGAAGG+TGG | + | chr6_3:68518448-68518467 | Msa0957450:intron | 30.0% | |
| TTTGAGAAAGAAATGAAGGT+GGG | + | chr6_3:68518449-68518468 | Msa0957450:intron | 30.0% | |
| !! | TGTTTTGTTCCAGCTCTATT+AGG | + | chr6_3:68516079-68516098 | Msa0957450:CDS | 35.0% |
| !! | GTTTTGTTCCAGCTCTATTA+GGG | + | chr6_3:68516080-68516099 | Msa0957450:CDS | 35.0% |
| AATATACGATCAGAGTGATG+GGG | - | chr6_3:68516133-68516152 | None:intergenic | 35.0% | |
| CAAATATACGATCAGAGTGA+TGG | - | chr6_3:68516135-68516154 | None:intergenic | 35.0% | |
| TCACTCTGATCGTATATTTG+AGG | + | chr6_3:68516135-68516154 | Msa0957450:CDS | 35.0% | |
| ! | TCGTATATTTGAGGCTTACA+TGG | + | chr6_3:68516144-68516163 | Msa0957450:CDS | 35.0% |
| TTGTCAACTTCTTGTTCTGT+TGG | + | chr6_3:68516225-68516244 | Msa0957450:intron | 35.0% | |
| TGTCAACTTCTTGTTCTGTT+GGG | + | chr6_3:68516226-68516245 | Msa0957450:intron | 35.0% | |
| AAAGGCCTGCAAAATATGAT+GGG | - | chr6_3:68516264-68516283 | None:intergenic | 35.0% | |
| TAAAGGCCTGCAAAATATGA+TGG | - | chr6_3:68516265-68516284 | None:intergenic | 35.0% | |
| !! | ATTTTGAAGGCATGCTCTAA+AGG | - | chr6_3:68516282-68516301 | None:intergenic | 35.0% |
| ! | GTTTTATATGCCCTGCATTA+CGG | + | chr6_3:68516378-68516397 | Msa0957450:intron | 35.0% |
| GACCCTGTAAATGATTACTT+CGG | + | chr6_3:68516563-68516582 | Msa0957450:CDS | 35.0% | |
| CAGTACTGTAGATGCTATTA+AGG | + | chr6_3:68516857-68516876 | Msa0957450:CDS | 35.0% | |
| TTAAGGAAGTCAGTTCCAAA+CGG | + | chr6_3:68516874-68516893 | Msa0957450:CDS | 35.0% | |
| ATAAAAATATGAGGAGACGG+GGG | - | chr6_3:68517133-68517152 | None:intergenic | 35.0% | |
| ! | TTTATTGCATGACTTTTCCC+AGG | + | chr6_3:68517216-68517235 | Msa0957450:intron | 35.0% |
| AGAAATATCAGATGGAACCT+GGG | - | chr6_3:68517236-68517255 | None:intergenic | 35.0% | |
| AAGAAATATCAGATGGAACC+TGG | - | chr6_3:68517237-68517256 | None:intergenic | 35.0% | |
| !!! | TTGCGCCACATACATTTTTT+TGG | + | chr6_3:68517417-68517436 | Msa0957450:intron | 35.0% |
| CACGACCAAAAAAATGTATG+TGG | - | chr6_3:68517425-68517444 | None:intergenic | 35.0% | |
| !!! | CACATACATTTTTTTGGTCG+TGG | + | chr6_3:68517423-68517442 | Msa0957450:intron | 35.0% |
| !!! | ATACATTTTTTTGGTCGTGG+TGG | + | chr6_3:68517426-68517445 | Msa0957450:intron | 35.0% |
| GTAGTAGGTTAAACTAGAAG+TGG | - | chr6_3:68517464-68517483 | None:intergenic | 35.0% | |
| ! | GAGAATCTAGTTCATGTATG+TGG | - | chr6_3:68517563-68517582 | None:intergenic | 35.0% |
| AAGCTTATCATGGATGAAGA+GGG | - | chr6_3:68517641-68517660 | None:intergenic | 35.0% | |
| AAAGCTTATCATGGATGAAG+AGG | - | chr6_3:68517642-68517661 | None:intergenic | 35.0% | |
| ! | ATACTGATTGTCATCCAACA+CGG | - | chr6_3:68517705-68517724 | None:intergenic | 35.0% |
| GATGTTAATGGAAGCAGTAA+TGG | + | chr6_3:68517894-68517913 | Msa0957450:intron | 35.0% | |
| TGTGAGTCATCTTTATCTGA+TGG | - | chr6_3:68518000-68518019 | None:intergenic | 35.0% | |
| TTCTTCTGATGCAATGGAAA+TGG | - | chr6_3:68518100-68518119 | None:intergenic | 35.0% | |
| TACAGATTCTTCTGATGCAA+TGG | - | chr6_3:68518106-68518125 | None:intergenic | 35.0% | |
| TGAGTCAAATACCATTTCAG+CGG | + | chr6_3:68518137-68518156 | Msa0957450:CDS | 35.0% | |
| TTTCCGAGTCAAGTCAAATT+GGG | + | chr6_3:68518160-68518179 | Msa0957450:CDS | 35.0% | |
| GCAATAATTACATGCTTGTG+AGG | + | chr6_3:68518345-68518364 | Msa0957450:intron | 35.0% | |
| TTGAGAAAGAAATGAAGGTG+GGG | + | chr6_3:68518450-68518469 | Msa0957450:intron | 35.0% | |
| TGTTGGAAAAAGAAAGTAGG+AGG | + | chr6_3:68518535-68518554 | Msa0957450:CDS | 35.0% | |
| ! | AAGTCCCCATCATATTTTGC+AGG | + | chr6_3:68516256-68516275 | Msa0957450:intron | 40.0% |
| AAGGCCTGCAAAATATGATG+GGG | - | chr6_3:68516263-68516282 | None:intergenic | 40.0% | |
| TCAAAGTAAAACTGAGGACG+TGG | - | chr6_3:68516476-68516495 | None:intergenic | 40.0% | |
| TCTACAGTACTGCTAGTTGA+TGG | - | chr6_3:68516849-68516868 | None:intergenic | 40.0% | |
| GATTCGAACTAAGCAACTTG+AGG | - | chr6_3:68517060-68517079 | None:intergenic | 40.0% | |
| GAATTACATTCTTCAAGCCC+AGG | - | chr6_3:68517493-68517512 | None:intergenic | 40.0% | |
| ! | TGCATGATTTTCTTGCAAGC+AGG | + | chr6_3:68517589-68517608 | Msa0957450:intron | 40.0% |
| TTATCATGGATGAAGAGGGT+GGG | - | chr6_3:68517637-68517656 | None:intergenic | 40.0% | |
| TTGTCAGATGGTCATCCTTA+TGG | + | chr6_3:68517665-68517684 | Msa0957450:CDS | 40.0% | |
| GTTGGATGACAATCAGTATG+TGG | + | chr6_3:68517706-68517725 | Msa0957450:CDS | 40.0% | |
| TATCAACTTGAAGACCTTGC+AGG | + | chr6_3:68517731-68517750 | Msa0957450:CDS | 40.0% | |
| ACATTAGCAATACTACTGGC+TGG | - | chr6_3:68517967-68517986 | None:intergenic | 40.0% | |
| AGATGACTCACATTCTTCAC+AGG | + | chr6_3:68518008-68518027 | Msa0957450:CDS | 40.0% | |
| GTTTCCGAGTCAAGTCAAAT+TGG | + | chr6_3:68518159-68518178 | Msa0957450:CDS | 40.0% | |
| TTCCGAGTCAAGTCAAATTG+GGG | + | chr6_3:68518161-68518180 | Msa0957450:CDS | 40.0% | |
| CTTGTGAGGGAAAAATGCAA+GGG | + | chr6_3:68518359-68518378 | Msa0957450:intron | 40.0% | |
| AGGGAAAAATGCAAGGGATT+AGG | + | chr6_3:68518365-68518384 | Msa0957450:intron | 40.0% | |
| GGGAAAAATGCAAGGGATTA+GGG | + | chr6_3:68518366-68518385 | Msa0957450:intron | 40.0% | |
| GGAAAAATGCAAGGGATTAG+GGG | + | chr6_3:68518367-68518386 | Msa0957450:intron | 40.0% | |
| !! | AGCGATTTTGAAGAAGCAGT+GGG | + | chr6_3:68518477-68518496 | Msa0957450:intron | 40.0% |
| TATGGGTTTCTGTGCTTTGC+AGG | + | chr6_3:68516409-68516428 | Msa0957450:intron | 45.0% | |
| ATGGGTTTCTGTGCTTTGCA+GGG | + | chr6_3:68516410-68516429 | Msa0957450:intron | 45.0% | |
| GACTCTTTACTCAGGATGCA+TGG | + | chr6_3:68516667-68516686 | Msa0957450:intron | 45.0% | |
| TGGAGATCTGTGCACGAATT+AGG | + | chr6_3:68516687-68516706 | Msa0957450:CDS | 45.0% | |
| TTGCTTAGTTCGAATCCCCT+CGG | + | chr6_3:68517064-68517083 | Msa0957450:intron | 45.0% | |
| ! | ATTTTACAACCACTCCCGAG+GGG | - | chr6_3:68517082-68517101 | None:intergenic | 45.0% |
| ! | CATTTTACAACCACTCCCGA+GGG | - | chr6_3:68517083-68517102 | None:intergenic | 45.0% |
| ! | TCATTTTACAACCACTCCCG+AGG | - | chr6_3:68517084-68517103 | None:intergenic | 45.0% |
| GGCGCAAAATAGAAATGCAG+TGG | - | chr6_3:68517404-68517423 | None:intergenic | 45.0% | |
| !!! | TTTTTTTGGTCGTGGTGGTC+TGG | + | chr6_3:68517431-68517450 | Msa0957450:intron | 45.0% |
| TTAACCTACTACCCAGTACC+TGG | + | chr6_3:68517472-68517491 | Msa0957450:intron | 45.0% | |
| TAACCTACTACCCAGTACCT+GGG | + | chr6_3:68517473-68517492 | Msa0957450:intron | 45.0% | |
| ATTCTTCAAGCCCAGGTACT+GGG | - | chr6_3:68517486-68517505 | None:intergenic | 45.0% | |
| TATCATGGATGAAGAGGGTG+GGG | - | chr6_3:68517636-68517655 | None:intergenic | 45.0% | |
| CTTATCATGGATGAAGAGGG+TGG | - | chr6_3:68517638-68517657 | None:intergenic | 45.0% | |
| TGATTGTCATCCAACACGGT+GGG | - | chr6_3:68517701-68517720 | None:intergenic | 45.0% | |
| ! | AGCAGTAATGGAGTCACTGA+AGG | + | chr6_3:68517906-68517925 | Msa0957450:CDS | 45.0% |
| ! | CCTTCGGATTTTGTACTTCC+AGG | - | chr6_3:68517933-68517952 | None:intergenic | 45.0% |
| ! | CCTGGAAGTACAAAATCCGA+AGG | + | chr6_3:68517930-68517949 | Msa0957450:CDS | 45.0% |
| ! | TTAGCAATACTACTGGCTGG+TGG | - | chr6_3:68517964-68517983 | None:intergenic | 45.0% |
| TCCGAGTCAAGTCAAATTGG+GGG | + | chr6_3:68518162-68518181 | Msa0957450:CDS | 45.0% | |
| !! | TCCCCCAATTTGACTTGACT+CGG | - | chr6_3:68518166-68518185 | None:intergenic | 45.0% |
| TAATGTGTTGTCCTGTGGCA+GGG | - | chr6_3:68518199-68518218 | None:intergenic | 45.0% | |
| ATAATGTGTTGTCCTGTGGC+AGG | - | chr6_3:68518200-68518219 | None:intergenic | 45.0% | |
| ACGGATAATGTGTTGTCCTG+TGG | - | chr6_3:68518204-68518223 | None:intergenic | 45.0% | |
| GCTTGTGAGGGAAAAATGCA+AGG | + | chr6_3:68518358-68518377 | Msa0957450:intron | 45.0% | |
| AGAAAGAAATGAAGGTGGGG+TGG | + | chr6_3:68518453-68518472 | Msa0957450:intron | 45.0% | |
| GAAAGAAATGAAGGTGGGGT+GGG | + | chr6_3:68518454-68518473 | Msa0957450:intron | 45.0% | |
| !! | GAGCGATTTTGAAGAAGCAG+TGG | + | chr6_3:68518476-68518495 | Msa0957450:intron | 45.0% |
| TTGAAGAAGCAGTGGGATGA+TGG | + | chr6_3:68518484-68518503 | Msa0957450:intron | 45.0% | |
| GGAAGGAAGAGGAGATATGT+TGG | + | chr6_3:68518518-68518537 | Msa0957450:CDS | 45.0% | |
| GAGGAGAAGAGAGAAATCAC+AGG | + | chr6_3:68518554-68518573 | Msa0957450:CDS | 45.0% | |
| !!! | TAAATTTTCAATTAAAAAAA+AGG | - | chr6_3:68517301-68517320 | None:intergenic | 5.0% |
| ATGGCATGCCCTAATAGAGC+TGG | - | chr6_3:68516091-68516110 | None:intergenic | 50.0% | |
| CAATGTTCTGCAACCTCCTG+AGG | + | chr6_3:68516517-68516536 | Msa0957450:CDS | 50.0% | |
| GATTCACCAACCTCATCCTC+AGG | - | chr6_3:68516536-68516555 | None:intergenic | 50.0% | |
| CAAACCTCCATCCTGCTCAT+TGG | - | chr6_3:68516900-68516919 | None:intergenic | 50.0% | |
| ! | CACTTGAGGTGCTAGCTAAG+TGG | + | chr6_3:68517015-68517034 | Msa0957450:intron | 50.0% |
| TGCTTAGTTCGAATCCCCTC+GGG | + | chr6_3:68517065-68517084 | Msa0957450:intron | 50.0% | |
| GAAATGCAGTGGCCCGTAAA+TGG | - | chr6_3:68517393-68517412 | None:intergenic | 50.0% | |
| CATTCTTCAAGCCCAGGTAC+TGG | - | chr6_3:68517487-68517506 | None:intergenic | 50.0% | |
| TGCAAGCAGGAAGAGAAGTG+TGG | + | chr6_3:68517602-68517621 | Msa0957450:intron | 50.0% | |
| ATCCAACACGGTGGGTACAT+GGG | - | chr6_3:68517693-68517712 | None:intergenic | 50.0% | |
| CTGATTGTCATCCAACACGG+TGG | - | chr6_3:68517702-68517721 | None:intergenic | 50.0% | |
| CACTGGATGGAAAACCTGCA+AGG | - | chr6_3:68517748-68517767 | None:intergenic | 50.0% | |
| ! | AGGTTTTCCATCCAGTGCAG+AGG | + | chr6_3:68517751-68517770 | Msa0957450:CDS | 50.0% |
| ! | TTTTCCATCCAGTGCAGAGG+AGG | + | chr6_3:68517754-68517773 | Msa0957450:CDS | 50.0% |
| TCTTTCTTCCTCCTCTGCAC+TGG | - | chr6_3:68517765-68517784 | None:intergenic | 50.0% | |
| AATGGAGTCACTGAAGGACC+TGG | + | chr6_3:68517912-68517931 | Msa0957450:CDS | 50.0% | |
| ! | TGACTCGGAAACCGCTGAAA+TGG | - | chr6_3:68518151-68518170 | None:intergenic | 50.0% |
| AATGTGTTGTCCTGTGGCAG+GGG | - | chr6_3:68518198-68518217 | None:intergenic | 50.0% | |
| ! | AAGCAGTGGGATGATGGTGT+TGG | + | chr6_3:68518490-68518509 | Msa0957450:CDS | 50.0% |
| ! | AGTGGGATGATGGTGTTGGA+GGG | + | chr6_3:68518494-68518513 | Msa0957450:CDS | 50.0% |
| TCTGCAACCTCCTGAGGATG+AGG | + | chr6_3:68516523-68516542 | Msa0957450:CDS | 55.0% | |
| CAACCTCCTGAGGATGAGGT+TGG | + | chr6_3:68516527-68516546 | Msa0957450:CDS | 55.0% | |
| TCACCAACCTCATCCTCAGG+AGG | - | chr6_3:68516533-68516552 | None:intergenic | 55.0% | |
| GTTCCAAACGGCCAATGAGC+AGG | + | chr6_3:68516886-68516905 | Msa0957450:CDS | 55.0% | |
| CATCCTGCTCATTGGCCGTT+TGG | - | chr6_3:68516892-68516911 | None:intergenic | 55.0% | |
| CAAACGGCCAATGAGCAGGA+TGG | + | chr6_3:68516890-68516909 | Msa0957450:CDS | 55.0% | |
| ! | TTTTGGTCGTGGTGGTCTGG+TGG | + | chr6_3:68517434-68517453 | Msa0957450:intron | 55.0% |
| !! | AAGCCCAGGTACTGGGTAGT+AGG | - | chr6_3:68517479-68517498 | None:intergenic | 55.0% |
| GTGGGTACATGGGGACCATA+AGG | - | chr6_3:68517683-68517702 | None:intergenic | 55.0% | |
| TCCAACACGGTGGGTACATG+GGG | - | chr6_3:68517692-68517711 | None:intergenic | 55.0% | |
| CATCCAACACGGTGGGTACA+TGG | - | chr6_3:68517694-68517713 | None:intergenic | 55.0% | |
| TCTTCCTCCTCTGCACTGGA+TGG | - | chr6_3:68517761-68517780 | None:intergenic | 55.0% | |
| GCTGGTGGTTGTTCTGCCTT+CGG | - | chr6_3:68517949-68517968 | None:intergenic | 55.0% | |
| ! | CAGTGGGATGATGGTGTTGG+AGG | + | chr6_3:68518493-68518512 | Msa0957450:CDS | 55.0% |
| ! | TGATGGTGTTGGAGGGAGGA+AGG | + | chr6_3:68518501-68518520 | Msa0957450:CDS | 55.0% |
| TGTTGGAGGGAGGAAGGAAG+AGG | + | chr6_3:68518507-68518526 | Msa0957450:CDS | 55.0% | |
| ACGGCCAATGAGCAGGATGG+AGG | + | chr6_3:68516893-68516912 | Msa0957450:CDS | 60.0% | |
| AGTTCGAATCCCCTCGGGAG+TGG | + | chr6_3:68517070-68517089 | Msa0957450:intron | 60.0% | |
| TCCCCATGTACCCACCGTGT+TGG | + | chr6_3:68517688-68517707 | Msa0957450:CDS | 60.0% | |
| ! | GGGATGATGGTGTTGGAGGG+AGG | + | chr6_3:68518497-68518516 | Msa0957450:CDS | 60.0% |
| GTGTTGTCCTGTGGCAGGGG+TGG | - | chr6_3:68518195-68518214 | None:intergenic | 65.0% | |
| AACCCAGCCACCCCTGCCAC+AGG | + | chr6_3:68518185-68518204 | Msa0957450:CDS | 70.0% | |
| GTCCTGTGGCAGGGGTGGCT+GGG | - | chr6_3:68518190-68518209 | None:intergenic | 70.0% | |
| TGTCCTGTGGCAGGGGTGGC+TGG | - | chr6_3:68518191-68518210 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 68516019 | 68518606 | 68516019 | ID=Msa0957450;Name=Msa0957450 |
| chr6_3 | mRNA | 68516019 | 68518606 | 68516019 | ID=Msa0957450-mRNA-1;Parent=Msa0957450;Name=Msa0957450-mRNA-1;_AED=0.08;_eAED=0.16;_QI=0|0.16|0|0.85|1|1|7|0|400 |
| chr6_3 | exon | 68516019 | 68516165 | 68516019 | ID=Msa0957450-mRNA-1:exon:12592;Parent=Msa0957450-mRNA-1 |
| chr6_3 | exon | 68516431 | 68516589 | 68516431 | ID=Msa0957450-mRNA-1:exon:12593;Parent=Msa0957450-mRNA-1 |
| chr6_3 | exon | 68516681 | 68516914 | 68516681 | ID=Msa0957450-mRNA-1:exon:12594;Parent=Msa0957450-mRNA-1 |
| chr6_3 | exon | 68517238 | 68517282 | 68517238 | ID=Msa0957450-mRNA-1:exon:12595;Parent=Msa0957450-mRNA-1 |
| chr6_3 | exon | 68517611 | 68517784 | 68517611 | ID=Msa0957450-mRNA-1:exon:12596;Parent=Msa0957450-mRNA-1 |
| chr6_3 | exon | 68517895 | 68518221 | 68517895 | ID=Msa0957450-mRNA-1:exon:12597;Parent=Msa0957450-mRNA-1 |
| chr6_3 | exon | 68518490 | 68518606 | 68518490 | ID=Msa0957450-mRNA-1:exon:12598;Parent=Msa0957450-mRNA-1 |
| chr6_3 | CDS | 68516019 | 68516165 | 68516019 | ID=Msa0957450-mRNA-1:cds;Parent=Msa0957450-mRNA-1 |
| chr6_3 | CDS | 68516431 | 68516589 | 68516431 | ID=Msa0957450-mRNA-1:cds;Parent=Msa0957450-mRNA-1 |
| chr6_3 | CDS | 68516681 | 68516914 | 68516681 | ID=Msa0957450-mRNA-1:cds;Parent=Msa0957450-mRNA-1 |
| chr6_3 | CDS | 68517238 | 68517282 | 68517238 | ID=Msa0957450-mRNA-1:cds;Parent=Msa0957450-mRNA-1 |
| chr6_3 | CDS | 68517611 | 68517784 | 68517611 | ID=Msa0957450-mRNA-1:cds;Parent=Msa0957450-mRNA-1 |
| chr6_3 | CDS | 68517895 | 68518221 | 68517895 | ID=Msa0957450-mRNA-1:cds;Parent=Msa0957450-mRNA-1 |
| chr6_3 | CDS | 68518490 | 68518606 | 68518490 | ID=Msa0957450-mRNA-1:cds;Parent=Msa0957450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
