Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958140 | XP_039682791.1 | 73.457 | 324 | 27 | 2 | 1 | 265 | 1 | 324 | 2.17e-160 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0958130 | Msa0958140 | 0.831695 | 1.443168e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958140 | MtrunA17_Chr6g0475481 | 73.457 | 324 | 27 | 2 | 1 | 265 | 1 | 324 | 1.99e-164 | 458 |
| Msa0958140 | MtrunA17_Chr6g0475411 | 62.500 | 184 | 37 | 3 | 91 | 264 | 3 | 164 | 1.25e-69 | 213 |
| Msa0958140 | MtrunA17_Chr4g0013241 | 48.095 | 210 | 57 | 2 | 107 | 265 | 236 | 444 | 8.52e-58 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958140 | AT3G14160.1 | 43.234 | 303 | 102 | 7 | 27 | 265 | 159 | 455 | 5.97e-65 | 209 |
| Msa0958140 | AT5G01780.3 | 40.909 | 264 | 85 | 9 | 68 | 265 | 49 | 307 | 1.21e-46 | 158 |
| Msa0958140 | AT5G01780.4 | 40.909 | 264 | 85 | 9 | 68 | 265 | 49 | 307 | 1.21e-46 | 158 |
| Msa0958140 | AT5G01780.1 | 40.909 | 264 | 85 | 9 | 68 | 265 | 129 | 387 | 2.77e-46 | 159 |
| Msa0958140 | AT5G01780.2 | 40.909 | 264 | 85 | 9 | 68 | 265 | 184 | 442 | 7.71e-46 | 159 |
| Msa0958140 | AT3G14140.1 | 42.529 | 174 | 84 | 4 | 16 | 180 | 155 | 321 | 2.89e-32 | 123 |
| Msa0958140 | AT3G14140.1 | 65.672 | 67 | 22 | 1 | 181 | 247 | 398 | 463 | 1.08e-21 | 94.4 |
| Msa0958140 | AT5G01780.5 | 41.935 | 124 | 57 | 5 | 68 | 180 | 184 | 303 | 7.19e-17 | 79.7 |
Find 74 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATCCCCTTTACTAATT+TGG | 0.148694 | 6_3:+71257534 | None:intergenic |
| TTGAAACCACCTTTGTTTAA+AGG | 0.158222 | 6_3:-71257584 | Msa0958140:CDS |
| GTGAAAGTATGTAGGGAATT+AGG | 0.173680 | 6_3:-71257452 | Msa0958140:CDS |
| TGATGTGTCTTGGTAGAAAT+TGG | 0.246815 | 6_3:-71257367 | Msa0958140:CDS |
| AGGAATTCATCAGGAATCTT+TGG | 0.258019 | 6_3:+71257290 | None:intergenic |
| AGGAATACTTCCACCTTGTT+TGG | 0.291418 | 6_3:+71257610 | None:intergenic |
| CAAGGCGAAGAAAGTTCTTC+TGG | 0.301818 | 6_3:-71256771 | Msa0958140:CDS |
| GGAATTCATCAGGAATCTTT+GGG | 0.303780 | 6_3:+71257291 | None:intergenic |
| AAGAAAGTTCTTCTGGAATC+TGG | 0.306255 | 6_3:-71256764 | Msa0958140:CDS |
| GGAATACTTCCACCTTGTTT+GGG | 0.319663 | 6_3:+71257611 | None:intergenic |
| GATTCAATCGGCCAGGTTTA+CGG | 0.336875 | 6_3:+71256639 | None:intergenic |
| ATTGGTAACTAGCATCAAAA+TGG | 0.343994 | 6_3:-71259409 | Msa0958140:exon |
| TGAAAGTATGTAGGGAATTA+GGG | 0.346841 | 6_3:-71257451 | Msa0958140:CDS |
| ATTCAAACGATAGTTCAAAA+AGG | 0.365028 | 6_3:-71259461 | Msa0958140:five_prime_UTR |
| CCAGTGGTGTCATTCTCTAT+TGG | 0.369089 | 6_3:-71256836 | Msa0958140:CDS |
| TTGCAGAGTCAACCAATGTT+AGG | 0.385230 | 6_3:+71257270 | None:intergenic |
| AGCAGAACCAAATTAGTAAA+GGG | 0.396089 | 6_3:-71257541 | Msa0958140:CDS |
| TTAAGATAGTGAAAGTATGT+AGG | 0.436961 | 6_3:-71257460 | Msa0958140:CDS |
| TAAGATAGTGAAAGTATGTA+GGG | 0.463631 | 6_3:-71257459 | Msa0958140:CDS |
| GAGACAGGTTGGTGGTTGAA+TGG | 0.472765 | 6_3:+71259324 | None:intergenic |
| ACCAATGTTAGGAATTCATC+AGG | 0.473909 | 6_3:+71257281 | None:intergenic |
| AACTCCAATGGTTCCATTCG+CGG | 0.473968 | 6_3:-71259363 | Msa0958140:CDS |
| AGAAAGTTCTTCTGGAATCT+GGG | 0.474429 | 6_3:-71256763 | Msa0958140:CDS |
| GTATGTAGGGAATTAGGGTT+AGG | 0.475609 | 6_3:-71257446 | Msa0958140:CDS |
| GAATTAGGGTTAGGTGAAGG+AGG | 0.478275 | 6_3:-71257437 | Msa0958140:CDS |
| TTGAACGTTACCGGTGTTGT+GGG | 0.486685 | 6_3:+71259285 | None:intergenic |
| GAGCAGAACCAAATTAGTAA+AGG | 0.487213 | 6_3:-71257542 | Msa0958140:CDS |
| GAATATCAGCGACCGTGTGA+TGG | 0.488611 | 6_3:-71257323 | Msa0958140:CDS |
| ATTGAACGTTACCGGTGTTG+TGG | 0.489735 | 6_3:+71259284 | None:intergenic |
| TTCTGAAAGTAAGATTCAAT+CGG | 0.490241 | 6_3:+71256627 | None:intergenic |
| TTTGATAAGGTTGCTGCTGT+TGG | 0.497816 | 6_3:-71257722 | Msa0958140:intron |
| AAGCGGCTAGGAGCAGTCTC+TGG | 0.505878 | 6_3:+71256680 | None:intergenic |
| TCCTGATGAATTCCTAACAT+TGG | 0.507183 | 6_3:-71257282 | Msa0958140:intron |
| AATATCAGCGACCGTGTGAT+GGG | 0.507213 | 6_3:-71257322 | Msa0958140:CDS |
| TTTCACTATCTTAACTTGAT+CGG | 0.509198 | 6_3:+71257469 | None:intergenic |
| GAAACTAATCTCCGTAAACC+TGG | 0.513368 | 6_3:-71256650 | Msa0958140:CDS |
| ACCAACCTAGTTATGAAGGT+GGG | 0.516364 | 6_3:-71257409 | Msa0958140:CDS |
| ATTCGTACTTCGATACCCAT+TGG | 0.521354 | 6_3:-71259427 | Msa0958140:five_prime_UTR |
| AAAGTAAGATTCAATCGGCC+AGG | 0.525942 | 6_3:+71256632 | None:intergenic |
| GATGTGTCTTGGTAGAAATT+GGG | 0.527686 | 6_3:-71257366 | Msa0958140:CDS |
| CTGTTTCCTTTAAACAAAGG+TGG | 0.534028 | 6_3:+71257578 | None:intergenic |
| AGCGGTGTTTGTGAAGAGAC+AGG | 0.536235 | 6_3:+71259309 | None:intergenic |
| GAATACTTCCACCTTGTTTG+GGG | 0.540380 | 6_3:+71257612 | None:intergenic |
| TCTCTGTTTCCTTTAAACAA+AGG | 0.540412 | 6_3:+71257575 | None:intergenic |
| GTTACCGGTGTTGTGGGCAG+CGG | 0.542345 | 6_3:+71259291 | None:intergenic |
| TTTGTGAAGAGACAGGTTGG+TGG | 0.546742 | 6_3:+71259316 | None:intergenic |
| TATTCGTATTTACTTGTCTG+AGG | 0.548174 | 6_3:+71257341 | None:intergenic |
| AGTGAACAGAGTATCGATGA+AGG | 0.554444 | 6_3:-71256863 | Msa0958140:intron |
| AAATTGAAAATGATGTGTCT+TGG | 0.563234 | 6_3:-71257377 | Msa0958140:CDS |
| AATACTTCCACCTTGTTTGG+GGG | 0.564372 | 6_3:+71257613 | None:intergenic |
| ACGACCGCGAATGGAACCAT+TGG | 0.567862 | 6_3:+71259359 | None:intergenic |
| AACAAAGGTGGTTTCAAACG+AGG | 0.570284 | 6_3:+71257590 | None:intergenic |
| CCCCACCTTCATAACTAGGT+TGG | 0.572257 | 6_3:+71257408 | None:intergenic |
| ATAGCCCCACCTTCATAACT+AGG | 0.574167 | 6_3:+71257404 | None:intergenic |
| GTTTCTTCAAGCAAGCGGCT+AGG | 0.580450 | 6_3:+71256668 | None:intergenic |
| TCGCCATCGCAAAACTCCAA+TGG | 0.583502 | 6_3:-71259375 | Msa0958140:CDS |
| GATTAGTTTCTTCAAGCAAG+CGG | 0.583922 | 6_3:+71256663 | None:intergenic |
| AAGGCTAGAAATGTCTTCCA+TGG | 0.590049 | 6_3:-71256719 | Msa0958140:CDS |
| CCAACCTAGTTATGAAGGTG+GGG | 0.593129 | 6_3:-71257408 | Msa0958140:CDS |
| AGGGAATTAGGGTTAGGTGA+AGG | 0.601485 | 6_3:-71257440 | Msa0958140:CDS |
| TACCAACCTAGTTATGAAGG+TGG | 0.606763 | 6_3:-71257410 | Msa0958140:CDS |
| GCAGAACCAAATTAGTAAAG+GGG | 0.612341 | 6_3:-71257540 | Msa0958140:CDS |
| GAAAGTTCTTCTGGAATCTG+GGG | 0.621233 | 6_3:-71256762 | Msa0958140:CDS |
| GAATTCATCAGGAATCTTTG+GGG | 0.622105 | 6_3:+71257292 | None:intergenic |
| GAACAATGATTGTGACAAAG+AGG | 0.622895 | 6_3:-71257681 | Msa0958140:CDS |
| GTGAACAGAGTATCGATGAA+GGG | 0.626296 | 6_3:-71256862 | Msa0958140:intron |
| AACAATGATTGTGACAAAGA+GGG | 0.631402 | 6_3:-71257680 | Msa0958140:CDS |
| CCAATAGAGAATGACACCAC+TGG | 0.639301 | 6_3:+71256836 | None:intergenic |
| GCTTAATAGCATTAACACCA+TGG | 0.652198 | 6_3:+71256702 | None:intergenic |
| AATTCATCAGGAATCTTTGG+GGG | 0.652640 | 6_3:+71257293 | None:intergenic |
| AACACCGCTGCCCACAACAC+CGG | 0.661276 | 6_3:-71259295 | Msa0958140:intron |
| TATCGATGAAGGGTTGCCAG+TGG | 0.666760 | 6_3:-71256852 | Msa0958140:CDS |
| GTGTTTGTGAAGAGACAGGT+TGG | 0.671938 | 6_3:+71259313 | None:intergenic |
| TGATGAAAGGGATGTTGACA+AGG | 0.672012 | 6_3:-71256789 | Msa0958140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAAAATTTATTCAATTT+TGG | - | chr6_3:71256971-71256990 | Msa0958140:intron | 10.0% |
| !!! | TACAAAAATTTATTCAATTT+TGG | - | chr6_3:71256971-71256990 | Msa0958140:intron | 10.0% |
| !!! | TACAAAAATTTATTCAATTT+TGG | - | chr6_3:71256971-71256990 | Msa0958140:intron | 10.0% |
| !! | TTTCAAAATAATTTATGTCT+TGG | - | chr6_3:71258078-71258097 | Msa0958140:intron | 15.0% |
| !!! | TTTGAAATATTAATAGAGTT+AGG | - | chr6_3:71258181-71258200 | Msa0958140:intron | 15.0% |
| !! | TTGAAATATTAATAGAGTTA+GGG | - | chr6_3:71258182-71258201 | Msa0958140:intron | 15.0% |
| !!! | TAATGGATTTTATTTTGATA+AGG | - | chr6_3:71258348-71258367 | Msa0958140:intron | 15.0% |
| !! | ATTACTGTATTTGTATTTGT+TGG | - | chr6_3:71256895-71256914 | Msa0958140:intron | 20.0% |
| !!! | TTTGAGATTAAAAACTCAAT+TGG | - | chr6_3:71257696-71257715 | Msa0958140:CDS | 20.0% |
| !! | TTGAGATTAAAAACTCAATT+GGG | - | chr6_3:71257697-71257716 | Msa0958140:CDS | 20.0% |
| !!! | AGGGATTAATTTATTGATTT+GGG | - | chr6_3:71257813-71257832 | Msa0958140:intron | 20.0% |
| !! | ATGACTCTTTCATTAATTAA+TGG | - | chr6_3:71258331-71258350 | Msa0958140:intron | 20.0% |
| !! | TAATTTACAATACAAATGTC+TGG | + | chr6_3:71258895-71258914 | None:intergenic | 20.0% |
| !! | AAGATTCAAAATGTAAAATG+TGG | + | chr6_3:71259158-71259177 | None:intergenic | 20.0% |
| ! | ATTCAAACGATAGTTCAAAA+AGG | - | chr6_3:71256622-71256641 | Msa0958140:CDS | 25.0% |
| ! | ATCATAAAATTGAACGTTAC+CGG | + | chr6_3:71256810-71256829 | None:intergenic | 25.0% |
| ! | TCCTTGGTATCAATTAATTT+CGG | + | chr6_3:71257040-71257059 | None:intergenic | 25.0% |
| ! | ATCATCACGAAATTGAAATT+AGG | - | chr6_3:71257131-71257150 | Msa0958140:intron | 25.0% |
| ! | TCATCACGAAATTGAAATTA+GGG | - | chr6_3:71257132-71257151 | Msa0958140:intron | 25.0% |
| ! | TTAGTGATTACTGTATTTGT+TGG | - | chr6_3:71256889-71256908 | Msa0958140:intron | 25.0% |
| ! | TCCTTGGTATCAATTAATTT+CGG | + | chr6_3:71257040-71257059 | None:intergenic | 25.0% |
| ! | ATCATCACGAAATTGAAATT+AGG | - | chr6_3:71257131-71257150 | Msa0958140:intron | 25.0% |
| ! | TCATCACGAAATTGAAATTA+GGG | - | chr6_3:71257132-71257151 | Msa0958140:intron | 25.0% |
| ! | TTAGTGATTACTGTATTTGT+TGG | - | chr6_3:71256889-71256908 | Msa0958140:intron | 25.0% |
| !! | ATTTTCCTCAGTATCAATTT+CGG | + | chr6_3:71257583-71257602 | None:intergenic | 25.0% |
| !! | GAGGGATTAATTTATTGATT+TGG | - | chr6_3:71257812-71257831 | Msa0958140:intron | 25.0% |
| !!! | AAAATTTTAAGGGACCAAAT+TGG | - | chr6_3:71257843-71257862 | Msa0958140:intron | 25.0% |
| !!! | AAATTTTAAGGGACCAAATT+GGG | - | chr6_3:71257844-71257863 | Msa0958140:intron | 25.0% |
| ! | AATTGAATAAAGACCCAATT+TGG | + | chr6_3:71257860-71257879 | None:intergenic | 25.0% |
| ! | GAAAATTGAAATATCAACAG+AGG | + | chr6_3:71257989-71258008 | None:intergenic | 25.0% |
| ! | TGTGACAAAAACAAAGAAAA+AGG | - | chr6_3:71258028-71258047 | Msa0958140:intron | 25.0% |
| ! | GTGACAAAAACAAAGAAAAA+GGG | - | chr6_3:71258029-71258048 | Msa0958140:intron | 25.0% |
| !! | AAATATTTGCCTCTATGTTT+TGG | + | chr6_3:71258134-71258153 | None:intergenic | 25.0% |
| !! | TTTACTCAAGAAGATTTTGT+AGG | - | chr6_3:71258249-71258268 | Msa0958140:intron | 25.0% |
| ! | TTAAAGGAAACAGAGAAAAA+AGG | - | chr6_3:71258515-71258534 | Msa0958140:intron | 25.0% |
| !! | TTTCACTATCTTAACTTGAT+CGG | + | chr6_3:71258617-71258636 | None:intergenic | 25.0% |
| !! | TTAAGATAGTGAAAGTATGT+AGG | - | chr6_3:71258623-71258642 | Msa0958140:intron | 25.0% |
| !! | TAAGATAGTGAAAGTATGTA+GGG | - | chr6_3:71258624-71258643 | Msa0958140:intron | 25.0% |
| ! | AAATTGAAAATGATGTGTCT+TGG | - | chr6_3:71258706-71258725 | Msa0958140:intron | 25.0% |
| ! | GTAAATTATTACGCTAAGAA+CGG | - | chr6_3:71258907-71258926 | Msa0958140:intron | 25.0% |
| !! | TTCTGAAAGTAAGATTCAAT+CGG | + | chr6_3:71259459-71259478 | None:intergenic | 25.0% |
| ! | TTTTGATGCTAGTTACCAAT+GGG | + | chr6_3:71256674-71256693 | None:intergenic | 30.0% |
| !! | ATTTTGATGCTAGTTACCAA+TGG | + | chr6_3:71256675-71256694 | None:intergenic | 30.0% |
| ! | ATTGGTAACTAGCATCAAAA+TGG | - | chr6_3:71256674-71256693 | Msa0958140:CDS | 30.0% |
| AGCATCACGAAATTGAAATT+AGG | - | chr6_3:71256851-71256870 | Msa0958140:CDS | 30.0% | |
| GCATCACGAAATTGAAATTA+GGG | - | chr6_3:71256852-71256871 | Msa0958140:CDS | 30.0% | |
| TGGTATCAATTAATTTCGGT+GGG | + | chr6_3:71257036-71257055 | None:intergenic | 30.0% | |
| TTGGTATCAATTAATTTCGG+TGG | + | chr6_3:71257037-71257056 | None:intergenic | 30.0% | |
| ACCGAAATTAATTGATACCA+AGG | - | chr6_3:71257036-71257055 | Msa0958140:intron | 30.0% | |
| CTAATCAAATTGAACGTTAC+CGG | + | chr6_3:71257090-71257109 | None:intergenic | 30.0% | |
| TGGTATCAATTAATTTCGGT+GGG | + | chr6_3:71257036-71257055 | None:intergenic | 30.0% | |
| TTGGTATCAATTAATTTCGG+TGG | + | chr6_3:71257037-71257056 | None:intergenic | 30.0% | |
| ACCGAAATTAATTGATACCA+AGG | - | chr6_3:71257036-71257055 | Msa0958140:intron | 30.0% | |
| CTAATCAAATTGAACGTTAC+CGG | + | chr6_3:71257090-71257109 | None:intergenic | 30.0% | |
| !! | TTTTGAGTAAACCACCAAAT+TGG | - | chr6_3:71257927-71257946 | Msa0958140:intron | 30.0% |
| !!! | ATGTTTTGGTCACATAACAA+GGG | + | chr6_3:71258120-71258139 | None:intergenic | 30.0% |
| !!! | TATGTTTTGGTCACATAACA+AGG | + | chr6_3:71258121-71258140 | None:intergenic | 30.0% |
| TCTTGAGTAAACCACTAATT+TGG | + | chr6_3:71258240-71258259 | None:intergenic | 30.0% | |
| AACAATGATTGTGACAAAGA+GGG | - | chr6_3:71258403-71258422 | Msa0958140:intron | 30.0% | |
| ! | TTGAAACCACCTTTGTTTAA+AGG | - | chr6_3:71258499-71258518 | Msa0958140:intron | 30.0% |
| TCTCTGTTTCCTTTAAACAA+AGG | + | chr6_3:71258511-71258530 | None:intergenic | 30.0% | |
| AGCAGAACCAAATTAGTAAA+GGG | - | chr6_3:71258542-71258561 | Msa0958140:intron | 30.0% | |
| ! | TGAAAGTATGTAGGGAATTA+GGG | - | chr6_3:71258632-71258651 | Msa0958140:intron | 30.0% |
| ! | TTTTACCAACCTAGTTATGA+AGG | - | chr6_3:71258670-71258689 | Msa0958140:intron | 30.0% |
| TATTCGTATTTACTTGTCTG+AGG | + | chr6_3:71258745-71258764 | None:intergenic | 30.0% | |
| CGCTATTTAATACAAAGTGT+TGG | - | chr6_3:71259051-71259070 | Msa0958140:intron | 30.0% | |
| !! | AGTTTTTGTATGGTGATGAA+AGG | - | chr6_3:71259281-71259300 | Msa0958140:intron | 30.0% |
| !! | GTTTTTGTATGGTGATGAAA+GGG | - | chr6_3:71259282-71259301 | Msa0958140:intron | 30.0% |
| CGATAGTTCAAAAAGGAAAG+TGG | - | chr6_3:71256629-71256648 | Msa0958140:CDS | 35.0% | |
| CCACTGCAAACAAATTGTTA+GGG | + | chr6_3:71257724-71257743 | None:intergenic | 35.0% | |
| ACCACTGCAAACAAATTGTT+AGG | + | chr6_3:71257725-71257744 | None:intergenic | 35.0% | |
| TCAACATTAACACAGACTAC+TGG | + | chr6_3:71257748-71257767 | None:intergenic | 35.0% | |
| ! | TGGGCTGTGAGAAAATTTTA+AGG | - | chr6_3:71257832-71257851 | Msa0958140:intron | 35.0% |
| ! | GGGCTGTGAGAAAATTTTAA+GGG | - | chr6_3:71257833-71257852 | Msa0958140:intron | 35.0% |
| TTACAAAGACAGGACCAATT+TGG | + | chr6_3:71257944-71257963 | None:intergenic | 35.0% | |
| TGAGAATGACTTACAAAGAC+AGG | + | chr6_3:71257954-71257973 | None:intergenic | 35.0% | |
| TTGAAATATCAACAGAGGCA+GGG | + | chr6_3:71257984-71258003 | None:intergenic | 35.0% | |
| ATTGAAATATCAACAGAGGC+AGG | + | chr6_3:71257985-71258004 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGTCACATGACGA+GGG | + | chr6_3:71258022-71258041 | None:intergenic | 35.0% |
| !!! | TTTGTTTTTGTCACATGACG+AGG | + | chr6_3:71258023-71258042 | None:intergenic | 35.0% |
| GTTATGTGACCAAAACATAG+AGG | - | chr6_3:71258122-71258141 | Msa0958140:intron | 35.0% | |
| GAACAATGATTGTGACAAAG+AGG | - | chr6_3:71258402-71258421 | Msa0958140:intron | 35.0% | |
| CTGTTTCCTTTAAACAAAGG+TGG | + | chr6_3:71258508-71258527 | None:intergenic | 35.0% | |
| AGGAAACAGAGAAAAAAGGA+AGG | - | chr6_3:71258519-71258538 | Msa0958140:intron | 35.0% | |
| GAGCAGAACCAAATTAGTAA+AGG | - | chr6_3:71258541-71258560 | Msa0958140:intron | 35.0% | |
| GCAGAACCAAATTAGTAAAG+GGG | - | chr6_3:71258543-71258562 | Msa0958140:intron | 35.0% | |
| ACACATCCCCTTTACTAATT+TGG | + | chr6_3:71258552-71258571 | None:intergenic | 35.0% | |
| ! | GTGAAAGTATGTAGGGAATT+AGG | - | chr6_3:71258631-71258650 | Msa0958140:intron | 35.0% |
| TGATGTGTCTTGGTAGAAAT+TGG | - | chr6_3:71258716-71258735 | Msa0958140:intron | 35.0% | |
| GATGTGTCTTGGTAGAAATT+GGG | - | chr6_3:71258717-71258736 | Msa0958140:intron | 35.0% | |
| AATTCATCAGGAATCTTTGG+GGG | + | chr6_3:71258793-71258812 | None:intergenic | 35.0% | |
| GAATTCATCAGGAATCTTTG+GGG | + | chr6_3:71258794-71258813 | None:intergenic | 35.0% | |
| GGAATTCATCAGGAATCTTT+GGG | + | chr6_3:71258795-71258814 | None:intergenic | 35.0% | |
| AGGAATTCATCAGGAATCTT+TGG | + | chr6_3:71258796-71258815 | None:intergenic | 35.0% | |
| TCCTGATGAATTCCTAACAT+TGG | - | chr6_3:71258801-71258820 | Msa0958140:intron | 35.0% | |
| ACCAATGTTAGGAATTCATC+AGG | + | chr6_3:71258805-71258824 | None:intergenic | 35.0% | |
| AATCAAAGATTCACATTCCC+TGG | - | chr6_3:71258834-71258853 | Msa0958140:intron | 35.0% | |
| ! | AAGTTTGGATTTAGGGTGTT+TGG | + | chr6_3:71258860-71258879 | None:intergenic | 35.0% |
| TCAAGGGAAGTTTGGATTTA+GGG | + | chr6_3:71258867-71258886 | None:intergenic | 35.0% | |
| ATCAAGGGAAGTTTGGATTT+AGG | + | chr6_3:71258868-71258887 | None:intergenic | 35.0% | |
| !! | AAGAAAGTTCTTCTGGAATC+TGG | - | chr6_3:71259319-71259338 | Msa0958140:CDS | 35.0% |
| !! | AGAAAGTTCTTCTGGAATCT+GGG | - | chr6_3:71259320-71259339 | Msa0958140:CDS | 35.0% |
| !!! | TCTGGGGATGTTTTAATCTT+CGG | - | chr6_3:71259337-71259356 | Msa0958140:CDS | 35.0% |
| !!! | TGTTTTAATCTTCGGTGGAA+AGG | - | chr6_3:71259345-71259364 | Msa0958140:CDS | 35.0% |
| GCTTAATAGCATTAACACCA+TGG | + | chr6_3:71259384-71259403 | None:intergenic | 35.0% | |
| !! | GATTAGTTTCTTCAAGCAAG+CGG | + | chr6_3:71259423-71259442 | None:intergenic | 35.0% |
| ATTCGTACTTCGATACCCAT+TGG | - | chr6_3:71256656-71256675 | Msa0958140:CDS | 40.0% | |
| ! | GTCTCTTGTTCGATTTTCCT+TGG | + | chr6_3:71257056-71257075 | None:intergenic | 40.0% |
| ! | GTCTCTTGTTCGATTTTCCT+TGG | + | chr6_3:71257056-71257075 | None:intergenic | 40.0% |
| TCCTCAGTATCAATTTCGGT+GGG | + | chr6_3:71257579-71257598 | None:intergenic | 40.0% | |
| TTCCTCAGTATCAATTTCGG+TGG | + | chr6_3:71257580-71257599 | None:intergenic | 40.0% | |
| !! | CTTCTAAAACCACTTGGGTT+GGG | + | chr6_3:71257667-71257686 | None:intergenic | 40.0% |
| !! | CAGTCCTTCTAAAACCACTT+GGG | + | chr6_3:71257672-71257691 | None:intergenic | 40.0% |
| !! | ACAGTCCTTCTAAAACCACT+TGG | + | chr6_3:71257673-71257692 | None:intergenic | 40.0% |
| ! | CCCTAACAATTTGTTTGCAG+TGG | - | chr6_3:71257721-71257740 | Msa0958140:intron | 40.0% |
| TAGTCCAGTATGAACATGTG+AGG | - | chr6_3:71257793-71257812 | Msa0958140:intron | 40.0% | |
| AGTCCAGTATGAACATGTGA+GGG | - | chr6_3:71257794-71257813 | Msa0958140:intron | 40.0% | |
| AATCCCTCACATGTTCATAC+TGG | + | chr6_3:71257800-71257819 | None:intergenic | 40.0% | |
| ! | TGATAGTGCCTTACAAAGAC+AGG | - | chr6_3:71258212-71258231 | Msa0958140:intron | 40.0% |
| GATAGTGCCTTACAAAGACA+GGG | - | chr6_3:71258213-71258232 | Msa0958140:intron | 40.0% | |
| ATTTGGTCCCTGTCTTTGTA+AGG | + | chr6_3:71258223-71258242 | None:intergenic | 40.0% | |
| AAAGACAGGGACCAAATTAG+TGG | - | chr6_3:71258226-71258245 | Msa0958140:intron | 40.0% | |
| TTTGATAAGGTTGCTGCTGT+TGG | - | chr6_3:71258361-71258380 | Msa0958140:intron | 40.0% | |
| ! | TTGGGGGTGCAAATATCAAA+AGG | + | chr6_3:71258457-71258476 | None:intergenic | 40.0% |
| ! | AATACTTCCACCTTGTTTGG+GGG | + | chr6_3:71258473-71258492 | None:intergenic | 40.0% |
| ! | GAATACTTCCACCTTGTTTG+GGG | + | chr6_3:71258474-71258493 | None:intergenic | 40.0% |
| ! | GGAATACTTCCACCTTGTTT+GGG | + | chr6_3:71258475-71258494 | None:intergenic | 40.0% |
| AGGAATACTTCCACCTTGTT+TGG | + | chr6_3:71258476-71258495 | None:intergenic | 40.0% | |
| AACAAAGGTGGTTTCAAACG+AGG | + | chr6_3:71258496-71258515 | None:intergenic | 40.0% | |
| ACCTGGGATGATTCATTTGA+AGG | - | chr6_3:71258576-71258595 | Msa0958140:intron | 40.0% | |
| CCTGGGATGATTCATTTGAA+GGG | - | chr6_3:71258577-71258596 | Msa0958140:intron | 40.0% | |
| GTATGTAGGGAATTAGGGTT+AGG | - | chr6_3:71258637-71258656 | Msa0958140:intron | 40.0% | |
| TACCAACCTAGTTATGAAGG+TGG | - | chr6_3:71258673-71258692 | Msa0958140:intron | 40.0% | |
| ACCAACCTAGTTATGAAGGT+GGG | - | chr6_3:71258674-71258693 | Msa0958140:intron | 40.0% | |
| TTGCAGAGTCAACCAATGTT+AGG | + | chr6_3:71258816-71258835 | None:intergenic | 40.0% | |
| CAAATGTCTGGAGAGATCAA+GGG | + | chr6_3:71258883-71258902 | None:intergenic | 40.0% | |
| ACAAATGTCTGGAGAGATCA+AGG | + | chr6_3:71258884-71258903 | None:intergenic | 40.0% | |
| !! | AGTGAACAGAGTATCGATGA+AGG | - | chr6_3:71259220-71259239 | Msa0958140:intron | 40.0% |
| !! | GTGAACAGAGTATCGATGAA+GGG | - | chr6_3:71259221-71259240 | Msa0958140:intron | 40.0% |
| ! | GACACTGCAGAGTTTTTGTA+TGG | - | chr6_3:71259271-71259290 | Msa0958140:intron | 40.0% |
| TGATGAAAGGGATGTTGACA+AGG | - | chr6_3:71259294-71259313 | Msa0958140:intron | 40.0% | |
| !! | GAAAGTTCTTCTGGAATCTG+GGG | - | chr6_3:71259321-71259340 | Msa0958140:CDS | 40.0% |
| AAGGCTAGAAATGTCTTCCA+TGG | - | chr6_3:71259364-71259383 | Msa0958140:CDS | 40.0% | |
| GAAACTAATCTCCGTAAACC+TGG | - | chr6_3:71259433-71259452 | Msa0958140:five_prime_UTR | 40.0% | |
| AAAGTAAGATTCAATCGGCC+AGG | + | chr6_3:71259454-71259473 | None:intergenic | 40.0% | |
| ! | GAACCATTGGAGTTTTGCGA+TGG | + | chr6_3:71256714-71256733 | None:intergenic | 45.0% |
| AACTCCAATGGTTCCATTCG+CGG | - | chr6_3:71256720-71256739 | Msa0958140:CDS | 45.0% | |
| ! | TTTGTGAAGAGACAGGTTGG+TGG | + | chr6_3:71256770-71256789 | None:intergenic | 45.0% |
| GTGTTTGTGAAGAGACAGGT+TGG | + | chr6_3:71256773-71256792 | None:intergenic | 45.0% | |
| !! | TTGAACGTTACCGGTGTTGT+GGG | + | chr6_3:71256801-71256820 | None:intergenic | 45.0% |
| ! | ATTGAACGTTACCGGTGTTG+TGG | + | chr6_3:71256802-71256821 | None:intergenic | 45.0% |
| ACCCACCGAAATTGATACTG+AGG | - | chr6_3:71257575-71257594 | Msa0958140:CDS | 45.0% | |
| AGACCTTGAGAGACAGTTCA+AGG | - | chr6_3:71257611-71257630 | Msa0958140:CDS | 45.0% | |
| AGACCTTGAACTGTCTCTCA+AGG | + | chr6_3:71257617-71257636 | None:intergenic | 45.0% | |
| !! | AAAACCACTTGGGTTGGGTT+GGG | + | chr6_3:71257662-71257681 | None:intergenic | 45.0% |
| !! | TAAAACCACTTGGGTTGGGT+TGG | + | chr6_3:71257663-71257682 | None:intergenic | 45.0% |
| !! | CCTTCTAAAACCACTTGGGT+TGG | + | chr6_3:71257668-71257687 | None:intergenic | 45.0% |
| !!! | CCAACCCAAGTGGTTTTAGA+AGG | - | chr6_3:71257665-71257684 | Msa0958140:CDS | 45.0% |
| CAAAGACAGGACCAATTTGG+TGG | + | chr6_3:71257941-71257960 | None:intergenic | 45.0% | |
| GATATTTGCACCCCCAAACA+AGG | - | chr6_3:71258460-71258479 | Msa0958140:intron | 45.0% | |
| CCCTTCAAATGAATCATCCC+AGG | + | chr6_3:71258580-71258599 | None:intergenic | 45.0% | |
| AGGGAATTAGGGTTAGGTGA+AGG | - | chr6_3:71258643-71258662 | Msa0958140:intron | 45.0% | |
| GAATTAGGGTTAGGTGAAGG+AGG | - | chr6_3:71258646-71258665 | Msa0958140:intron | 45.0% | |
| CCAACCTAGTTATGAAGGTG+GGG | - | chr6_3:71258675-71258694 | Msa0958140:intron | 45.0% | |
| ATAGCCCCACCTTCATAACT+AGG | + | chr6_3:71258682-71258701 | None:intergenic | 45.0% | |
| AATATCAGCGACCGTGTGAT+GGG | - | chr6_3:71258761-71258780 | Msa0958140:intron | 45.0% | |
| TGGAGAGATCAAGGGAAGTT+TGG | + | chr6_3:71258875-71258894 | None:intergenic | 45.0% | |
| TACGCTAAGAACGGTCAACT+TGG | - | chr6_3:71258916-71258935 | Msa0958140:intron | 45.0% | |
| TGCTACGTGCTATAGAACTC+TGG | - | chr6_3:71258989-71259008 | Msa0958140:intron | 45.0% | |
| TGTGGATGCAGTGTTGTCAA+TGG | + | chr6_3:71259140-71259159 | None:intergenic | 45.0% | |
| ! | GATAGAGTTTGCTTGCTTGC+AGG | - | chr6_3:71259186-71259205 | Msa0958140:intron | 45.0% |
| CCAATAGAGAATGACACCAC+TGG | + | chr6_3:71259250-71259269 | None:intergenic | 45.0% | |
| !! | CCAGTGGTGTCATTCTCTAT+TGG | - | chr6_3:71259247-71259266 | Msa0958140:intron | 45.0% |
| CAAGGCGAAGAAAGTTCTTC+TGG | - | chr6_3:71259312-71259331 | Msa0958140:CDS | 45.0% | |
| !!! | GGGGATGTTTTAATCTTCGG+TGG | - | chr6_3:71259340-71259359 | Msa0958140:CDS | 45.0% |
| GATTCAATCGGCCAGGTTTA+CGG | + | chr6_3:71259447-71259466 | None:intergenic | 45.0% | |
| !!! | TTTTAAATAAAAGATAATTT+AGG | - | chr6_3:71257888-71257907 | Msa0958140:intron | 5.0% |
| TCGCCATCGCAAAACTCCAA+TGG | - | chr6_3:71256708-71256727 | Msa0958140:CDS | 50.0% | |
| !! | GAGACAGGTTGGTGGTTGAA+TGG | + | chr6_3:71256762-71256781 | None:intergenic | 50.0% |
| AGCGGTGTTTGTGAAGAGAC+AGG | + | chr6_3:71256777-71256796 | None:intergenic | 50.0% | |
| CAAGAGACCTTGAGATACGC+CGG | - | chr6_3:71257068-71257087 | Msa0958140:intron | 50.0% | |
| AACGTTACCGGCGTATCTCA+AGG | + | chr6_3:71257078-71257097 | None:intergenic | 50.0% | |
| CAAGAGACCTTGAGATACGC+CGG | - | chr6_3:71257068-71257087 | Msa0958140:intron | 50.0% | |
| AACGTTACCGGCGTATCTCA+AGG | + | chr6_3:71257078-71257097 | None:intergenic | 50.0% | |
| GAACTGTCTCTCAAGGTCTC+TGG | + | chr6_3:71257610-71257629 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGTCTGGAAGTGT+TGG | + | chr6_3:71257644-71257663 | None:intergenic | 50.0% |
| ATTTGCACCCCCAAACAAGG+TGG | - | chr6_3:71258463-71258482 | Msa0958140:intron | 50.0% | |
| AAAGGGGATGTGTTACGACC+TGG | - | chr6_3:71258559-71258578 | Msa0958140:intron | 50.0% | |
| AAGGGGATGTGTTACGACCT+GGG | - | chr6_3:71258560-71258579 | Msa0958140:intron | 50.0% | |
| CCCCACCTTCATAACTAGGT+TGG | + | chr6_3:71258678-71258697 | None:intergenic | 50.0% | |
| GAATATCAGCGACCGTGTGA+TGG | - | chr6_3:71258760-71258779 | Msa0958140:intron | 50.0% | |
| ! | GGATTTAGGGTGTTTGGCCA+GGG | + | chr6_3:71258854-71258873 | None:intergenic | 50.0% |
| ! | TGGATTTAGGGTGTTTGGCC+AGG | + | chr6_3:71258855-71258874 | None:intergenic | 50.0% |
| ! | CGGTCAACTTGGTCTTCATC+AGG | - | chr6_3:71258927-71258946 | Msa0958140:intron | 50.0% |
| GTTTGCTTGCTTGCAGGACA+AGG | - | chr6_3:71259192-71259211 | Msa0958140:intron | 50.0% | |
| TATCGATGAAGGGTTGCCAG+TGG | - | chr6_3:71259231-71259250 | Msa0958140:intron | 50.0% | |
| GTTTCTTCAAGCAAGCGGCT+AGG | + | chr6_3:71259418-71259437 | None:intergenic | 50.0% | |
| ACGACCGCGAATGGAACCAT+TGG | + | chr6_3:71256727-71256746 | None:intergenic | 55.0% | |
| AACACGATCACGACCGCGAA+TGG | + | chr6_3:71256736-71256755 | None:intergenic | 55.0% | |
| GCTATAGCGCTGTAGCAGAG+CGG | - | chr6_3:71259085-71259104 | Msa0958140:intron | 55.0% | |
| AACACCGCTGCCCACAACAC+CGG | - | chr6_3:71256788-71256807 | Msa0958140:CDS | 60.0% | |
| !! | GTTACCGGTGTTGTGGGCAG+CGG | + | chr6_3:71256795-71256814 | None:intergenic | 60.0% |
| !! | TGGGTTGGGTTGGGTTGGTC+TGG | + | chr6_3:71257653-71257672 | None:intergenic | 60.0% |
| !! | CCACTTGGGTTGGGTTGGGT+TGG | + | chr6_3:71257658-71257677 | None:intergenic | 60.0% |
| CCAACCCAACCCAACCCAAG+TGG | - | chr6_3:71257655-71257674 | Msa0958140:CDS | 60.0% | |
| GGGGGAACTGACCCATCACA+CGG | + | chr6_3:71258775-71258794 | None:intergenic | 60.0% | |
| AAGCGGCTAGGAGCAGTCTC+TGG | + | chr6_3:71259406-71259425 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 71256619 | 71259486 | 71256619 | ID=Msa0958140;Name=Msa0958140 |
| chr6_3 | mRNA | 71256619 | 71259486 | 71256619 | ID=Msa0958140-mRNA-1;Parent=Msa0958140;Name=Msa0958140-mRNA-1;_AED=0.16;_eAED=0.16;_QI=74|0.33|0.25|1|0.33|0.25|4|0|265 |
| chr6_3 | exon | 71256619 | 71256876 | 71256619 | ID=Msa0958140-mRNA-1:exon:12987;Parent=Msa0958140-mRNA-1 |
| chr6_3 | exon | 71257283 | 71257507 | 71257283 | ID=Msa0958140-mRNA-1:exon:12986;Parent=Msa0958140-mRNA-1 |
| chr6_3 | exon | 71257538 | 71257735 | 71257538 | ID=Msa0958140-mRNA-1:exon:12985;Parent=Msa0958140-mRNA-1 |
| chr6_3 | exon | 71259296 | 71259486 | 71259296 | ID=Msa0958140-mRNA-1:exon:12984;Parent=Msa0958140-mRNA-1 |
| chr6_3 | five_prime_UTR | 71259413 | 71259486 | 71259413 | ID=Msa0958140-mRNA-1:five_prime_utr;Parent=Msa0958140-mRNA-1 |
| chr6_3 | CDS | 71259296 | 71259412 | 71259296 | ID=Msa0958140-mRNA-1:cds;Parent=Msa0958140-mRNA-1 |
| chr6_3 | CDS | 71257538 | 71257735 | 71257538 | ID=Msa0958140-mRNA-1:cds;Parent=Msa0958140-mRNA-1 |
| chr6_3 | CDS | 71257283 | 71257507 | 71257283 | ID=Msa0958140-mRNA-1:cds;Parent=Msa0958140-mRNA-1 |
| chr6_3 | CDS | 71256619 | 71256876 | 71256619 | ID=Msa0958140-mRNA-1:cds;Parent=Msa0958140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
