Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958130 | XP_039682791.1 | 73.457 | 324 | 27 | 2 | 1 | 265 | 1 | 324 | 3.87e-160 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0842710 | Msa0958130 | 0.809133 | 2.199408e-50 | -8.615850e-47 |
| Msa0916250 | Msa0958130 | 0.830746 | 2.468138e-55 | -8.615850e-47 |
| Msa0958130 | Msa0958140 | 0.831695 | 1.443168e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958130 | MtrunA17_Chr6g0475481 | 73.457 | 324 | 27 | 2 | 1 | 265 | 1 | 324 | 3.56e-164 | 457 |
| Msa0958130 | MtrunA17_Chr6g0475411 | 61.957 | 184 | 38 | 3 | 91 | 264 | 3 | 164 | 3.69e-68 | 209 |
| Msa0958130 | MtrunA17_Chr4g0013241 | 48.095 | 210 | 57 | 2 | 107 | 265 | 236 | 444 | 7.87e-57 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958130 | AT3G14160.1 | 43.478 | 299 | 99 | 7 | 31 | 265 | 163 | 455 | 7.85e-64 | 206 |
| Msa0958130 | AT5G01780.3 | 40.530 | 264 | 86 | 9 | 68 | 265 | 49 | 307 | 3.31e-45 | 154 |
| Msa0958130 | AT5G01780.4 | 40.530 | 264 | 86 | 9 | 68 | 265 | 49 | 307 | 3.31e-45 | 154 |
| Msa0958130 | AT5G01780.1 | 40.530 | 264 | 86 | 9 | 68 | 265 | 129 | 387 | 7.51e-45 | 155 |
| Msa0958130 | AT5G01780.2 | 40.530 | 264 | 86 | 9 | 68 | 265 | 184 | 442 | 2.53e-44 | 155 |
| Msa0958130 | AT3G14140.1 | 42.529 | 174 | 84 | 4 | 16 | 180 | 155 | 321 | 4.89e-32 | 123 |
| Msa0958130 | AT3G14140.1 | 64.179 | 67 | 23 | 1 | 181 | 247 | 398 | 463 | 3.13e-20 | 90.1 |
| Msa0958130 | AT5G01780.5 | 41.935 | 124 | 57 | 5 | 68 | 180 | 184 | 303 | 7.19e-17 | 79.7 |
Find 74 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATCCCCTTTACTAATT+TGG | 0.146522 | 6_3:+71203564 | None:intergenic |
| TTGAAACCACCTTTGTTTAA+AGG | 0.158222 | 6_3:-71203614 | Msa0958130:CDS |
| GTGAAAGTATGTAGGGAATT+AGG | 0.173680 | 6_3:-71203482 | Msa0958130:CDS |
| TGATGTGTCTTGGTAGAAAT+TGG | 0.246815 | 6_3:-71203397 | Msa0958130:CDS |
| AGGAATTCATCAGGAATCTT+TGG | 0.258019 | 6_3:+71203320 | None:intergenic |
| AGGAATACTTCCACCTTGTT+TGG | 0.291418 | 6_3:+71203640 | None:intergenic |
| CAAGGCGAAGAAAGTTCTTC+TGG | 0.301818 | 6_3:-71202801 | Msa0958130:CDS |
| GGAATTCATCAGGAATCTTT+GGG | 0.303780 | 6_3:+71203321 | None:intergenic |
| AAGAAAGTTCTTCTGGAATC+TGG | 0.306255 | 6_3:-71202794 | Msa0958130:CDS |
| GGAATACTTCCACCTTGTTT+GGG | 0.319663 | 6_3:+71203641 | None:intergenic |
| GATTCAATCGGCCAGGTTTA+CGG | 0.336875 | 6_3:+71202669 | None:intergenic |
| ATTGGTAACTAGCATCAAAA+TGG | 0.343994 | 6_3:-71204898 | Msa0958130:exon |
| TGAAAGTATGTAGGGAATTA+GGG | 0.346841 | 6_3:-71203481 | Msa0958130:CDS |
| CCAGTGGTGTCATTCTCTAT+TGG | 0.369089 | 6_3:-71202866 | Msa0958130:CDS |
| TTGCAGAGACAACCAATGTT+AGG | 0.394931 | 6_3:+71203300 | None:intergenic |
| AGCAGAACCAAATTAGTAAA+GGG | 0.396089 | 6_3:-71203571 | Msa0958130:CDS |
| ACCCAAACGATACTTCAAAA+AGG | 0.410277 | 6_3:-71204950 | Msa0958130:five_prime_UTR |
| TTAAGATAGTGAAAGTATGT+AGG | 0.436961 | 6_3:-71203490 | Msa0958130:CDS |
| TAAGATAGTGAAAGTATGTA+GGG | 0.463631 | 6_3:-71203489 | Msa0958130:CDS |
| GAGACAGGATGGTGGTTGAA+TGG | 0.469387 | 6_3:+71204813 | None:intergenic |
| AACTCCAATGGTTCCATTCG+CGG | 0.473968 | 6_3:-71204852 | Msa0958130:CDS |
| AGAAAGTTCTTCTGGAATCT+GGG | 0.474429 | 6_3:-71202793 | Msa0958130:CDS |
| GTATGTAGGGAATTAGGGTT+AGG | 0.475609 | 6_3:-71203476 | Msa0958130:CDS |
| GAATTAGGGTTAGGTGAAGG+AGG | 0.478275 | 6_3:-71203467 | Msa0958130:CDS |
| ACCAATGTTAGGAATTCATC+AGG | 0.480941 | 6_3:+71203311 | None:intergenic |
| TTGAACGTTACCGGTGTTGT+GGG | 0.486685 | 6_3:+71204774 | None:intergenic |
| GAGCAGAACCAAATTAGTAA+AGG | 0.487213 | 6_3:-71203572 | Msa0958130:CDS |
| GAATATCAGCGACCGTGTGA+TGG | 0.488611 | 6_3:-71203353 | Msa0958130:CDS |
| ATTGAACGTTACCGGTGTTG+TGG | 0.489735 | 6_3:+71204773 | None:intergenic |
| TTTGATAAGGTTGCTGCTGT+TGG | 0.497816 | 6_3:-71203752 | Msa0958130:intron |
| AAGCGGCTAGGAGCAGTCTC+TGG | 0.505878 | 6_3:+71202710 | None:intergenic |
| TCCTGATGAATTCCTAACAT+TGG | 0.507183 | 6_3:-71203312 | Msa0958130:intron |
| AATATCAGCGACCGTGTGAT+GGG | 0.507213 | 6_3:-71203352 | Msa0958130:CDS |
| TTTCACTATCTTAACTTGAT+CGG | 0.509198 | 6_3:+71203499 | None:intergenic |
| GAAACTAATCTCCGTAAACC+TGG | 0.513368 | 6_3:-71202680 | Msa0958130:CDS |
| ACCAACCTAGTTATGAAGGT+GGG | 0.516364 | 6_3:-71203439 | Msa0958130:CDS |
| GTCTGAAAGTAAGATTCAAT+CGG | 0.520803 | 6_3:+71202657 | None:intergenic |
| AAAGTAAGATTCAATCGGCC+AGG | 0.525942 | 6_3:+71202662 | None:intergenic |
| GATGTGTCTTGGTAGAAATT+GGG | 0.527686 | 6_3:-71203396 | Msa0958130:CDS |
| CTGTTTCCTTTAAACAAAGG+TGG | 0.534028 | 6_3:+71203608 | None:intergenic |
| GAATACTTCCACCTTGTTTG+GGG | 0.540380 | 6_3:+71203642 | None:intergenic |
| TCTCTGTTTCCTTTAAACAA+AGG | 0.540412 | 6_3:+71203605 | None:intergenic |
| GTTACCGGTGTTGTGGGCAG+CGG | 0.542345 | 6_3:+71204780 | None:intergenic |
| ATTCGTATCTCGATACCCAT+TGG | 0.543340 | 6_3:-71204916 | Msa0958130:five_prime_UTR |
| TATTCGTATTTACTTGTCTG+AGG | 0.548174 | 6_3:+71203371 | None:intergenic |
| AGTGAACAGAGTATCGATGA+AGG | 0.554444 | 6_3:-71202893 | Msa0958130:intron |
| AGCGGTGTTTGTGAAGAGAC+AGG | 0.560348 | 6_3:+71204798 | None:intergenic |
| AAATTGAAAATGATGTGTCT+TGG | 0.563234 | 6_3:-71203407 | Msa0958130:CDS |
| AATACTTCCACCTTGTTTGG+GGG | 0.564372 | 6_3:+71203643 | None:intergenic |
| ACGACCGCGAATGGAACCAT+TGG | 0.567862 | 6_3:+71204848 | None:intergenic |
| AACAAAGGTGGTTTCAAACG+AGG | 0.570284 | 6_3:+71203620 | None:intergenic |
| CCCCACCTTCATAACTAGGT+TGG | 0.572257 | 6_3:+71203438 | None:intergenic |
| ATAGCCCCACCTTCATAACT+AGG | 0.574167 | 6_3:+71203434 | None:intergenic |
| GTTTCTTCAAGCAAGCGGCT+AGG | 0.580450 | 6_3:+71202698 | None:intergenic |
| TCGCCATCGCAAAACTCCAA+TGG | 0.583502 | 6_3:-71204864 | Msa0958130:CDS |
| GATTAGTTTCTTCAAGCAAG+CGG | 0.583922 | 6_3:+71202693 | None:intergenic |
| CCAACCTAGTTATGAAGGTG+GGG | 0.593129 | 6_3:-71203438 | Msa0958130:CDS |
| AGGGAATTAGGGTTAGGTGA+AGG | 0.601485 | 6_3:-71203470 | Msa0958130:CDS |
| TACCAACCTAGTTATGAAGG+TGG | 0.606763 | 6_3:-71203440 | Msa0958130:CDS |
| GCAGAACCAAATTAGTAAAG+GGG | 0.612341 | 6_3:-71203570 | Msa0958130:CDS |
| GAAAGTTCTTCTGGAATCTG+GGG | 0.621233 | 6_3:-71202792 | Msa0958130:CDS |
| GAATTCATCAGGAATCTTTG+GGG | 0.622105 | 6_3:+71203322 | None:intergenic |
| GAACAATGATTGTGACAAAG+AGG | 0.622895 | 6_3:-71203711 | Msa0958130:CDS |
| GTGAACAGAGTATCGATGAA+GGG | 0.626296 | 6_3:-71202892 | Msa0958130:intron |
| TTTGTGAAGAGACAGGATGG+TGG | 0.630879 | 6_3:+71204805 | None:intergenic |
| AACAATGATTGTGACAAAGA+GGG | 0.631402 | 6_3:-71203710 | Msa0958130:CDS |
| CCAATAGAGAATGACACCAC+TGG | 0.639301 | 6_3:+71202866 | None:intergenic |
| ATGGCTAGAAATGTCTTCCA+TGG | 0.645861 | 6_3:-71202749 | Msa0958130:CDS |
| GCTTAATAGCATTAACACCA+TGG | 0.652198 | 6_3:+71202732 | None:intergenic |
| AATTCATCAGGAATCTTTGG+GGG | 0.652640 | 6_3:+71203323 | None:intergenic |
| AACACCGCTGCCCACAACAC+CGG | 0.661276 | 6_3:-71204784 | Msa0958130:intron |
| TATCGATGAAGGGTTGCCAG+TGG | 0.666760 | 6_3:-71202882 | Msa0958130:CDS |
| TGATGAAAGGGATGTTGACA+AGG | 0.672012 | 6_3:-71202819 | Msa0958130:CDS |
| GTGTTTGTGAAGAGACAGGA+TGG | 0.696338 | 6_3:+71204802 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAAAATTTATTCAATTT+TGG | - | chr6_3:71202997-71203016 | Msa0958130:intron | 10.0% |
| !!! | TACAAAAATTTATTCAATTT+TGG | - | chr6_3:71202997-71203016 | Msa0958130:intron | 10.0% |
| !!! | TTTGAAATATTAATAGAGTT+AGG | - | chr6_3:71203685-71203704 | Msa0958130:CDS | 15.0% |
| !! | TTGAAATATTAATAGAGTTA+GGG | - | chr6_3:71203686-71203705 | Msa0958130:CDS | 15.0% |
| !! | ATGATTCTTTCATTAATTAA+TGG | - | chr6_3:71203835-71203854 | Msa0958130:intron | 15.0% |
| !!! | TAATGGATTTTATTTTGATA+AGG | - | chr6_3:71203852-71203871 | Msa0958130:intron | 15.0% |
| !!! | TTTGAAATATTAATAGAGTT+AGG | - | chr6_3:71203685-71203704 | Msa0958130:CDS | 15.0% |
| !! | TTGAAATATTAATAGAGTTA+GGG | - | chr6_3:71203686-71203705 | Msa0958130:CDS | 15.0% |
| !! | ATGATTCTTTCATTAATTAA+TGG | - | chr6_3:71203835-71203854 | Msa0958130:intron | 15.0% |
| !!! | TAATGGATTTTATTTTGATA+AGG | - | chr6_3:71203852-71203871 | Msa0958130:intron | 15.0% |
| !!! | TTTACTCAAGAATATTTTGT+AGG | - | chr6_3:71203753-71203772 | Msa0958130:intron | 20.0% |
| !! | TAATTAACAATACAAATGTC+TGG | + | chr6_3:71204399-71204418 | None:intergenic | 20.0% |
| !! | AAGATTCAAAATGTAAAATG+TGG | + | chr6_3:71204662-71204681 | None:intergenic | 20.0% |
| !!! | TTTACTCAAGAATATTTTGT+AGG | - | chr6_3:71203753-71203772 | Msa0958130:intron | 20.0% |
| !! | TAATTAACAATACAAATGTC+TGG | + | chr6_3:71204399-71204418 | None:intergenic | 20.0% |
| !! | AAGATTCAAAATGTAAAATG+TGG | + | chr6_3:71204662-71204681 | None:intergenic | 20.0% |
| ! | ATCATAAAATTGAACGTTAC+CGG | + | chr6_3:71202855-71202874 | None:intergenic | 25.0% |
| ! | ATCATCACGAAATTGAAATT+AGG | - | chr6_3:71202883-71202902 | Msa0958130:CDS | 25.0% |
| ! | TCATCACGAAATTGAAATTA+GGG | - | chr6_3:71202884-71202903 | Msa0958130:CDS | 25.0% |
| ! | TTAGTGATTACTGTATTTGT+TGG | - | chr6_3:71202921-71202940 | Msa0958130:intron | 25.0% |
| !!! | GTTTTAAGCTAATACGAAAT+TGG | - | chr6_3:71202954-71202973 | Msa0958130:intron | 25.0% |
| !! | TTTGAGATTAAAAACTCAAC+TGG | - | chr6_3:71203183-71203202 | Msa0958130:intron | 25.0% |
| ! | TTGAGATTAAAAACTCAACT+GGG | - | chr6_3:71203184-71203203 | Msa0958130:intron | 25.0% |
| ! | GTTGAATTATTGTAAACAGA+AGG | - | chr6_3:71203264-71203283 | Msa0958130:intron | 25.0% |
| !!! | AGGGATTAATTTATTGACTT+GGG | - | chr6_3:71203314-71203333 | Msa0958130:CDS | 25.0% |
| !!! | AAAATTTTAAGGGACCAAAT+TGG | - | chr6_3:71203344-71203363 | Msa0958130:CDS | 25.0% |
| !!! | AAATTTTAAGGGACCAAATT+GGG | - | chr6_3:71203345-71203364 | Msa0958130:CDS | 25.0% |
| ! | AATTGAATAAAGACCCAATT+TGG | + | chr6_3:71203361-71203380 | None:intergenic | 25.0% |
| ! | GAAAACTGAAATATTAACAG+AGG | + | chr6_3:71203492-71203511 | None:intergenic | 25.0% |
| !! | AAATATTTGCCTCTATGTTT+TGG | + | chr6_3:71203638-71203657 | None:intergenic | 25.0% |
| ! | TTAAAGGAAACAGAGAAAAA+AGG | - | chr6_3:71204019-71204038 | Msa0958130:intron | 25.0% |
| !! | TTTCACTATCTTAACTTGAT+CGG | + | chr6_3:71204121-71204140 | None:intergenic | 25.0% |
| !! | TTAAGATAGTGAAAGTATGT+AGG | - | chr6_3:71204127-71204146 | Msa0958130:intron | 25.0% |
| !! | TAAGATAGTGAAAGTATGTA+GGG | - | chr6_3:71204128-71204147 | Msa0958130:intron | 25.0% |
| ! | AAATTGAAAATGATGTGTCT+TGG | - | chr6_3:71204210-71204229 | Msa0958130:intron | 25.0% |
| ! | GTTAATTATTACGCTAAGAA+CGG | - | chr6_3:71204411-71204430 | Msa0958130:intron | 25.0% |
| ! | ATCATAAAATTGAACGTTAC+CGG | + | chr6_3:71202855-71202874 | None:intergenic | 25.0% |
| ! | ATCATCACGAAATTGAAATT+AGG | - | chr6_3:71202883-71202902 | Msa0958130:CDS | 25.0% |
| ! | TCATCACGAAATTGAAATTA+GGG | - | chr6_3:71202884-71202903 | Msa0958130:CDS | 25.0% |
| ! | TTAGTGATTACTGTATTTGT+TGG | - | chr6_3:71202921-71202940 | Msa0958130:intron | 25.0% |
| !!! | GTTTTAAGCTAATACGAAAT+TGG | - | chr6_3:71202954-71202973 | Msa0958130:intron | 25.0% |
| !! | TTTGAGATTAAAAACTCAAC+TGG | - | chr6_3:71203183-71203202 | Msa0958130:intron | 25.0% |
| ! | TTGAGATTAAAAACTCAACT+GGG | - | chr6_3:71203184-71203203 | Msa0958130:intron | 25.0% |
| ! | GTTGAATTATTGTAAACAGA+AGG | - | chr6_3:71203264-71203283 | Msa0958130:intron | 25.0% |
| !!! | AGGGATTAATTTATTGACTT+GGG | - | chr6_3:71203314-71203333 | Msa0958130:CDS | 25.0% |
| !!! | AAAATTTTAAGGGACCAAAT+TGG | - | chr6_3:71203344-71203363 | Msa0958130:CDS | 25.0% |
| !!! | AAATTTTAAGGGACCAAATT+GGG | - | chr6_3:71203345-71203364 | Msa0958130:CDS | 25.0% |
| ! | AATTGAATAAAGACCCAATT+TGG | + | chr6_3:71203361-71203380 | None:intergenic | 25.0% |
| ! | GAAAACTGAAATATTAACAG+AGG | + | chr6_3:71203492-71203511 | None:intergenic | 25.0% |
| !! | AAATATTTGCCTCTATGTTT+TGG | + | chr6_3:71203638-71203657 | None:intergenic | 25.0% |
| ! | TTAAAGGAAACAGAGAAAAA+AGG | - | chr6_3:71204019-71204038 | Msa0958130:intron | 25.0% |
| !! | TTTCACTATCTTAACTTGAT+CGG | + | chr6_3:71204121-71204140 | None:intergenic | 25.0% |
| !! | TTAAGATAGTGAAAGTATGT+AGG | - | chr6_3:71204127-71204146 | Msa0958130:intron | 25.0% |
| !! | TAAGATAGTGAAAGTATGTA+GGG | - | chr6_3:71204128-71204147 | Msa0958130:intron | 25.0% |
| ! | AAATTGAAAATGATGTGTCT+TGG | - | chr6_3:71204210-71204229 | Msa0958130:intron | 25.0% |
| ! | GTTAATTATTACGCTAAGAA+CGG | - | chr6_3:71204411-71204430 | Msa0958130:intron | 25.0% |
| !!! | TCCTTTTTGAAGTATCGTTT+GGG | + | chr6_3:71202671-71202690 | None:intergenic | 30.0% |
| !!! | TTCCTTTTTGAAGTATCGTT+TGG | + | chr6_3:71202672-71202691 | None:intergenic | 30.0% |
| ! | TTTTGATGCTAGTTACCAAT+GGG | + | chr6_3:71202719-71202738 | None:intergenic | 30.0% |
| !! | ATTTTGATGCTAGTTACCAA+TGG | + | chr6_3:71202720-71202739 | None:intergenic | 30.0% |
| ! | ATTGGTAACTAGCATCAAAA+TGG | - | chr6_3:71202719-71202738 | Msa0958130:CDS | 30.0% |
| ! | ATTTTCCTCGGTATCAATTT+CGG | + | chr6_3:71203061-71203080 | None:intergenic | 30.0% |
| !! | TACTACTTCTAAAACCACTT+GGG | + | chr6_3:71203159-71203178 | None:intergenic | 30.0% |
| !! | ATACTACTTCTAAAACCACT+TGG | + | chr6_3:71203160-71203179 | None:intergenic | 30.0% |
| ! | GAGGGATTAATTTATTGACT+TGG | - | chr6_3:71203313-71203332 | Msa0958130:CDS | 30.0% |
| !! | TTTTGAGTAAACCACCAAAT+TGG | - | chr6_3:71203430-71203449 | Msa0958130:CDS | 30.0% |
| TGTGACAAAAACAAAGAGAA+AGG | - | chr6_3:71203531-71203550 | Msa0958130:intron | 30.0% | |
| GTGACAAAAACAAAGAGAAA+GGG | - | chr6_3:71203532-71203551 | Msa0958130:intron | 30.0% | |
| !!! | ATGTTTTGGTCACATAACAA+GGG | + | chr6_3:71203624-71203643 | None:intergenic | 30.0% |
| !!! | TATGTTTTGGTCACATAACA+AGG | + | chr6_3:71203625-71203644 | None:intergenic | 30.0% |
| TCTTGAGTAAACCACTAATT+TGG | + | chr6_3:71203744-71203763 | None:intergenic | 30.0% | |
| AACAATGATTGTGACAAAGA+GGG | - | chr6_3:71203907-71203926 | Msa0958130:intron | 30.0% | |
| ! | TTGAAACCACCTTTGTTTAA+AGG | - | chr6_3:71204003-71204022 | Msa0958130:intron | 30.0% |
| TCTCTGTTTCCTTTAAACAA+AGG | + | chr6_3:71204015-71204034 | None:intergenic | 30.0% | |
| AGCAGAACCAAATTAGTAAA+GGG | - | chr6_3:71204046-71204065 | Msa0958130:intron | 30.0% | |
| ! | TGAAAGTATGTAGGGAATTA+GGG | - | chr6_3:71204136-71204155 | Msa0958130:intron | 30.0% |
| ! | TTTTACCAACCTAGTTATGA+AGG | - | chr6_3:71204174-71204193 | Msa0958130:intron | 30.0% |
| TATTCGTATTTACTTGTCTG+AGG | + | chr6_3:71204249-71204268 | None:intergenic | 30.0% | |
| CGCTATTTAATACAAAGTGT+TGG | - | chr6_3:71204555-71204574 | Msa0958130:intron | 30.0% | |
| !! | AGTTTTTGTATGGTGATGAA+AGG | - | chr6_3:71204785-71204804 | Msa0958130:CDS | 30.0% |
| !! | GTTTTTGTATGGTGATGAAA+GGG | - | chr6_3:71204786-71204805 | Msa0958130:CDS | 30.0% |
| !!! | TGTTTTAATCTTCGATGGAA+TGG | - | chr6_3:71204849-71204868 | Msa0958130:CDS | 30.0% |
| GTCTGAAAGTAAGATTCAAT+CGG | + | chr6_3:71204963-71204982 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTGAAGTATCGTTT+GGG | + | chr6_3:71202671-71202690 | None:intergenic | 30.0% |
| !!! | TTCCTTTTTGAAGTATCGTT+TGG | + | chr6_3:71202672-71202691 | None:intergenic | 30.0% |
| ! | TTTTGATGCTAGTTACCAAT+GGG | + | chr6_3:71202719-71202738 | None:intergenic | 30.0% |
| !! | ATTTTGATGCTAGTTACCAA+TGG | + | chr6_3:71202720-71202739 | None:intergenic | 30.0% |
| ! | ATTGGTAACTAGCATCAAAA+TGG | - | chr6_3:71202719-71202738 | Msa0958130:CDS | 30.0% |
| ! | ATTTTCCTCGGTATCAATTT+CGG | + | chr6_3:71203061-71203080 | None:intergenic | 30.0% |
| !! | TACTACTTCTAAAACCACTT+GGG | + | chr6_3:71203159-71203178 | None:intergenic | 30.0% |
| !! | ATACTACTTCTAAAACCACT+TGG | + | chr6_3:71203160-71203179 | None:intergenic | 30.0% |
| ! | GAGGGATTAATTTATTGACT+TGG | - | chr6_3:71203313-71203332 | Msa0958130:CDS | 30.0% |
| !! | TTTTGAGTAAACCACCAAAT+TGG | - | chr6_3:71203430-71203449 | Msa0958130:CDS | 30.0% |
| TGTGACAAAAACAAAGAGAA+AGG | - | chr6_3:71203531-71203550 | Msa0958130:intron | 30.0% | |
| GTGACAAAAACAAAGAGAAA+GGG | - | chr6_3:71203532-71203551 | Msa0958130:intron | 30.0% | |
| !!! | ATGTTTTGGTCACATAACAA+GGG | + | chr6_3:71203624-71203643 | None:intergenic | 30.0% |
| !!! | TATGTTTTGGTCACATAACA+AGG | + | chr6_3:71203625-71203644 | None:intergenic | 30.0% |
| TCTTGAGTAAACCACTAATT+TGG | + | chr6_3:71203744-71203763 | None:intergenic | 30.0% | |
| AACAATGATTGTGACAAAGA+GGG | - | chr6_3:71203907-71203926 | Msa0958130:intron | 30.0% | |
| ! | TTGAAACCACCTTTGTTTAA+AGG | - | chr6_3:71204003-71204022 | Msa0958130:intron | 30.0% |
| TCTCTGTTTCCTTTAAACAA+AGG | + | chr6_3:71204015-71204034 | None:intergenic | 30.0% | |
| AGCAGAACCAAATTAGTAAA+GGG | - | chr6_3:71204046-71204065 | Msa0958130:intron | 30.0% | |
| ! | TGAAAGTATGTAGGGAATTA+GGG | - | chr6_3:71204136-71204155 | Msa0958130:intron | 30.0% |
| ! | TTTTACCAACCTAGTTATGA+AGG | - | chr6_3:71204174-71204193 | Msa0958130:intron | 30.0% |
| TATTCGTATTTACTTGTCTG+AGG | + | chr6_3:71204249-71204268 | None:intergenic | 30.0% | |
| CGCTATTTAATACAAAGTGT+TGG | - | chr6_3:71204555-71204574 | Msa0958130:intron | 30.0% | |
| !! | AGTTTTTGTATGGTGATGAA+AGG | - | chr6_3:71204785-71204804 | Msa0958130:CDS | 30.0% |
| !! | GTTTTTGTATGGTGATGAAA+GGG | - | chr6_3:71204786-71204805 | Msa0958130:CDS | 30.0% |
| !!! | TGTTTTAATCTTCGATGGAA+TGG | - | chr6_3:71204849-71204868 | Msa0958130:CDS | 30.0% |
| GTCTGAAAGTAAGATTCAAT+CGG | + | chr6_3:71204963-71204982 | None:intergenic | 30.0% | |
| ACCCAAACGATACTTCAAAA+AGG | - | chr6_3:71202667-71202686 | Msa0958130:CDS | 35.0% | |
| ACATTAACACAGAGACTCAT+GGG | + | chr6_3:71203246-71203265 | None:intergenic | 35.0% | |
| AACATTAACACAGAGACTCA+TGG | + | chr6_3:71203247-71203266 | None:intergenic | 35.0% | |
| ! | TGGGCTGTGAGAAAATTTTA+AGG | - | chr6_3:71203333-71203352 | Msa0958130:CDS | 35.0% |
| ! | GGGCTGTGAGAAAATTTTAA+GGG | - | chr6_3:71203334-71203353 | Msa0958130:CDS | 35.0% |
| TTACAAAGACAGGACCAATT+TGG | + | chr6_3:71203447-71203466 | None:intergenic | 35.0% | |
| CTGAAATATTAACAGAGGCA+GGG | + | chr6_3:71203487-71203506 | None:intergenic | 35.0% | |
| ACTGAAATATTAACAGAGGC+AGG | + | chr6_3:71203488-71203507 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGTCACATGACGA+TGG | + | chr6_3:71203525-71203544 | None:intergenic | 35.0% |
| GTTATGTGACCAAAACATAG+AGG | - | chr6_3:71203626-71203645 | Msa0958130:CDS | 35.0% | |
| GAACAATGATTGTGACAAAG+AGG | - | chr6_3:71203906-71203925 | Msa0958130:intron | 35.0% | |
| CTGTTTCCTTTAAACAAAGG+TGG | + | chr6_3:71204012-71204031 | None:intergenic | 35.0% | |
| AGGAAACAGAGAAAAAAGGA+AGG | - | chr6_3:71204023-71204042 | Msa0958130:intron | 35.0% | |
| GAGCAGAACCAAATTAGTAA+AGG | - | chr6_3:71204045-71204064 | Msa0958130:intron | 35.0% | |
| GCAGAACCAAATTAGTAAAG+GGG | - | chr6_3:71204047-71204066 | Msa0958130:intron | 35.0% | |
| ACACATCCCCTTTACTAATT+TGG | + | chr6_3:71204056-71204075 | None:intergenic | 35.0% | |
| ! | GTGAAAGTATGTAGGGAATT+AGG | - | chr6_3:71204135-71204154 | Msa0958130:intron | 35.0% |
| TGATGTGTCTTGGTAGAAAT+TGG | - | chr6_3:71204220-71204239 | Msa0958130:intron | 35.0% | |
| GATGTGTCTTGGTAGAAATT+GGG | - | chr6_3:71204221-71204240 | Msa0958130:intron | 35.0% | |
| AATTCATCAGGAATCTTTGG+GGG | + | chr6_3:71204297-71204316 | None:intergenic | 35.0% | |
| GAATTCATCAGGAATCTTTG+GGG | + | chr6_3:71204298-71204317 | None:intergenic | 35.0% | |
| GGAATTCATCAGGAATCTTT+GGG | + | chr6_3:71204299-71204318 | None:intergenic | 35.0% | |
| AGGAATTCATCAGGAATCTT+TGG | + | chr6_3:71204300-71204319 | None:intergenic | 35.0% | |
| TCCTGATGAATTCCTAACAT+TGG | - | chr6_3:71204305-71204324 | Msa0958130:intron | 35.0% | |
| ACCAATGTTAGGAATTCATC+AGG | + | chr6_3:71204309-71204328 | None:intergenic | 35.0% | |
| AATCAAAGATTCACATTCCC+TGG | - | chr6_3:71204338-71204357 | Msa0958130:intron | 35.0% | |
| ! | AAGTTTGGATTTAGGGTGTT+TGG | + | chr6_3:71204364-71204383 | None:intergenic | 35.0% |
| TCAAGGGAAGTTTGGATTTA+GGG | + | chr6_3:71204371-71204390 | None:intergenic | 35.0% | |
| ATCAAGGGAAGTTTGGATTT+AGG | + | chr6_3:71204372-71204391 | None:intergenic | 35.0% | |
| !! | AAGAAAGTTCTTCTGGAATC+TGG | - | chr6_3:71204823-71204842 | Msa0958130:CDS | 35.0% |
| !! | AGAAAGTTCTTCTGGAATCT+GGG | - | chr6_3:71204824-71204843 | Msa0958130:CDS | 35.0% |
| GCTTAATAGCATTAACACCA+TGG | + | chr6_3:71204888-71204907 | None:intergenic | 35.0% | |
| !! | GATTAGTTTCTTCAAGCAAG+CGG | + | chr6_3:71204927-71204946 | None:intergenic | 35.0% |
| ACCCAAACGATACTTCAAAA+AGG | - | chr6_3:71202667-71202686 | Msa0958130:CDS | 35.0% | |
| ACATTAACACAGAGACTCAT+GGG | + | chr6_3:71203246-71203265 | None:intergenic | 35.0% | |
| AACATTAACACAGAGACTCA+TGG | + | chr6_3:71203247-71203266 | None:intergenic | 35.0% | |
| ! | TGGGCTGTGAGAAAATTTTA+AGG | - | chr6_3:71203333-71203352 | Msa0958130:CDS | 35.0% |
| ! | GGGCTGTGAGAAAATTTTAA+GGG | - | chr6_3:71203334-71203353 | Msa0958130:CDS | 35.0% |
| TTACAAAGACAGGACCAATT+TGG | + | chr6_3:71203447-71203466 | None:intergenic | 35.0% | |
| CTGAAATATTAACAGAGGCA+GGG | + | chr6_3:71203487-71203506 | None:intergenic | 35.0% | |
| ACTGAAATATTAACAGAGGC+AGG | + | chr6_3:71203488-71203507 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGTCACATGACGA+TGG | + | chr6_3:71203525-71203544 | None:intergenic | 35.0% |
| GTTATGTGACCAAAACATAG+AGG | - | chr6_3:71203626-71203645 | Msa0958130:CDS | 35.0% | |
| GAACAATGATTGTGACAAAG+AGG | - | chr6_3:71203906-71203925 | Msa0958130:intron | 35.0% | |
| CTGTTTCCTTTAAACAAAGG+TGG | + | chr6_3:71204012-71204031 | None:intergenic | 35.0% | |
| AGGAAACAGAGAAAAAAGGA+AGG | - | chr6_3:71204023-71204042 | Msa0958130:intron | 35.0% | |
| GAGCAGAACCAAATTAGTAA+AGG | - | chr6_3:71204045-71204064 | Msa0958130:intron | 35.0% | |
| GCAGAACCAAATTAGTAAAG+GGG | - | chr6_3:71204047-71204066 | Msa0958130:intron | 35.0% | |
| ACACATCCCCTTTACTAATT+TGG | + | chr6_3:71204056-71204075 | None:intergenic | 35.0% | |
| ! | GTGAAAGTATGTAGGGAATT+AGG | - | chr6_3:71204135-71204154 | Msa0958130:intron | 35.0% |
| TGATGTGTCTTGGTAGAAAT+TGG | - | chr6_3:71204220-71204239 | Msa0958130:intron | 35.0% | |
| GATGTGTCTTGGTAGAAATT+GGG | - | chr6_3:71204221-71204240 | Msa0958130:intron | 35.0% | |
| AATTCATCAGGAATCTTTGG+GGG | + | chr6_3:71204297-71204316 | None:intergenic | 35.0% | |
| GAATTCATCAGGAATCTTTG+GGG | + | chr6_3:71204298-71204317 | None:intergenic | 35.0% | |
| GGAATTCATCAGGAATCTTT+GGG | + | chr6_3:71204299-71204318 | None:intergenic | 35.0% | |
| AGGAATTCATCAGGAATCTT+TGG | + | chr6_3:71204300-71204319 | None:intergenic | 35.0% | |
| TCCTGATGAATTCCTAACAT+TGG | - | chr6_3:71204305-71204324 | Msa0958130:intron | 35.0% | |
| ACCAATGTTAGGAATTCATC+AGG | + | chr6_3:71204309-71204328 | None:intergenic | 35.0% | |
| AATCAAAGATTCACATTCCC+TGG | - | chr6_3:71204338-71204357 | Msa0958130:intron | 35.0% | |
| ! | AAGTTTGGATTTAGGGTGTT+TGG | + | chr6_3:71204364-71204383 | None:intergenic | 35.0% |
| TCAAGGGAAGTTTGGATTTA+GGG | + | chr6_3:71204371-71204390 | None:intergenic | 35.0% | |
| ATCAAGGGAAGTTTGGATTT+AGG | + | chr6_3:71204372-71204391 | None:intergenic | 35.0% | |
| !! | AAGAAAGTTCTTCTGGAATC+TGG | - | chr6_3:71204823-71204842 | Msa0958130:CDS | 35.0% |
| !! | AGAAAGTTCTTCTGGAATCT+GGG | - | chr6_3:71204824-71204843 | Msa0958130:CDS | 35.0% |
| GCTTAATAGCATTAACACCA+TGG | + | chr6_3:71204888-71204907 | None:intergenic | 35.0% | |
| !! | GATTAGTTTCTTCAAGCAAG+CGG | + | chr6_3:71204927-71204946 | None:intergenic | 35.0% |
| ATTCGTATCTCGATACCCAT+TGG | - | chr6_3:71202701-71202720 | Msa0958130:CDS | 40.0% | |
| !! | ATCAATTTCGGTGGGTTAGT+TGG | + | chr6_3:71203049-71203068 | None:intergenic | 40.0% |
| AGAGACCTTGAGATATGCTT+CGG | - | chr6_3:71203087-71203106 | Msa0958130:intron | 40.0% | |
| !! | CTTCTAAAACCACTTGGGTT+GGG | + | chr6_3:71203154-71203173 | None:intergenic | 40.0% |
| !! | ACTTCTAAAACCACTTGGGT+TGG | + | chr6_3:71203155-71203174 | None:intergenic | 40.0% |
| GGTCCCTAACAATTTGATTG+CGG | - | chr6_3:71203205-71203224 | Msa0958130:intron | 40.0% | |
| ATTAACACAGAGACTCATGG+GGG | + | chr6_3:71203244-71203263 | None:intergenic | 40.0% | |
| CATTAACACAGAGACTCATG+GGG | + | chr6_3:71203245-71203264 | None:intergenic | 40.0% | |
| TAGTCCAGTATGAACATGTG+AGG | - | chr6_3:71203294-71203313 | Msa0958130:intron | 40.0% | |
| AGTCCAGTATGAACATGTGA+GGG | - | chr6_3:71203295-71203314 | Msa0958130:intron | 40.0% | |
| AATCCCTCACATGTTCATAC+TGG | + | chr6_3:71203301-71203320 | None:intergenic | 40.0% | |
| TGAGAACGACTTACAAAGAC+AGG | + | chr6_3:71203457-71203476 | None:intergenic | 40.0% | |
| ! | TGATAGTGCCTTACAAAGAC+AGG | - | chr6_3:71203716-71203735 | Msa0958130:CDS | 40.0% |
| GATAGTGCCTTACAAAGACA+GGG | - | chr6_3:71203717-71203736 | Msa0958130:CDS | 40.0% | |
| ATTTGGTCCCTGTCTTTGTA+AGG | + | chr6_3:71203727-71203746 | None:intergenic | 40.0% | |
| AAAGACAGGGACCAAATTAG+TGG | - | chr6_3:71203730-71203749 | Msa0958130:CDS | 40.0% | |
| TTTGATAAGGTTGCTGCTGT+TGG | - | chr6_3:71203865-71203884 | Msa0958130:intron | 40.0% | |
| ! | TTGGGGGTGCAAATATCAAA+AGG | + | chr6_3:71203961-71203980 | None:intergenic | 40.0% |
| ! | AATACTTCCACCTTGTTTGG+GGG | + | chr6_3:71203977-71203996 | None:intergenic | 40.0% |
| ! | GAATACTTCCACCTTGTTTG+GGG | + | chr6_3:71203978-71203997 | None:intergenic | 40.0% |
| ! | GGAATACTTCCACCTTGTTT+GGG | + | chr6_3:71203979-71203998 | None:intergenic | 40.0% |
| AGGAATACTTCCACCTTGTT+TGG | + | chr6_3:71203980-71203999 | None:intergenic | 40.0% | |
| AACAAAGGTGGTTTCAAACG+AGG | + | chr6_3:71204000-71204019 | None:intergenic | 40.0% | |
| ACCTGGGATGATTCATTTGA+AGG | - | chr6_3:71204080-71204099 | Msa0958130:intron | 40.0% | |
| CCTGGGATGATTCATTTGAA+GGG | - | chr6_3:71204081-71204100 | Msa0958130:intron | 40.0% | |
| GTATGTAGGGAATTAGGGTT+AGG | - | chr6_3:71204141-71204160 | Msa0958130:intron | 40.0% | |
| TACCAACCTAGTTATGAAGG+TGG | - | chr6_3:71204177-71204196 | Msa0958130:intron | 40.0% | |
| ACCAACCTAGTTATGAAGGT+GGG | - | chr6_3:71204178-71204197 | Msa0958130:intron | 40.0% | |
| TTGCAGAGACAACCAATGTT+AGG | + | chr6_3:71204320-71204339 | None:intergenic | 40.0% | |
| CAAATGTCTGGAGAGATCAA+GGG | + | chr6_3:71204387-71204406 | None:intergenic | 40.0% | |
| ACAAATGTCTGGAGAGATCA+AGG | + | chr6_3:71204388-71204407 | None:intergenic | 40.0% | |
| !! | AGTGAACAGAGTATCGATGA+AGG | - | chr6_3:71204724-71204743 | Msa0958130:intron | 40.0% |
| !! | GTGAACAGAGTATCGATGAA+GGG | - | chr6_3:71204725-71204744 | Msa0958130:intron | 40.0% |
| ! | GACACTGCAGAGTTTTTGTA+TGG | - | chr6_3:71204775-71204794 | Msa0958130:intron | 40.0% |
| TGATGAAAGGGATGTTGACA+AGG | - | chr6_3:71204798-71204817 | Msa0958130:CDS | 40.0% | |
| !! | GAAAGTTCTTCTGGAATCTG+GGG | - | chr6_3:71204825-71204844 | Msa0958130:CDS | 40.0% |
| !!! | GGGGATGTTTTAATCTTCGA+TGG | - | chr6_3:71204844-71204863 | Msa0958130:CDS | 40.0% |
| ATGGCTAGAAATGTCTTCCA+TGG | - | chr6_3:71204868-71204887 | Msa0958130:CDS | 40.0% | |
| GAAACTAATCTCCGTAAACC+TGG | - | chr6_3:71204937-71204956 | Msa0958130:five_prime_UTR | 40.0% | |
| AAAGTAAGATTCAATCGGCC+AGG | + | chr6_3:71204958-71204977 | None:intergenic | 40.0% | |
| ATTCGTATCTCGATACCCAT+TGG | - | chr6_3:71202701-71202720 | Msa0958130:CDS | 40.0% | |
| !! | ATCAATTTCGGTGGGTTAGT+TGG | + | chr6_3:71203049-71203068 | None:intergenic | 40.0% |
| AGAGACCTTGAGATATGCTT+CGG | - | chr6_3:71203087-71203106 | Msa0958130:intron | 40.0% | |
| !! | CTTCTAAAACCACTTGGGTT+GGG | + | chr6_3:71203154-71203173 | None:intergenic | 40.0% |
| !! | ACTTCTAAAACCACTTGGGT+TGG | + | chr6_3:71203155-71203174 | None:intergenic | 40.0% |
| GGTCCCTAACAATTTGATTG+CGG | - | chr6_3:71203205-71203224 | Msa0958130:intron | 40.0% | |
| ATTAACACAGAGACTCATGG+GGG | + | chr6_3:71203244-71203263 | None:intergenic | 40.0% | |
| CATTAACACAGAGACTCATG+GGG | + | chr6_3:71203245-71203264 | None:intergenic | 40.0% | |
| TAGTCCAGTATGAACATGTG+AGG | - | chr6_3:71203294-71203313 | Msa0958130:intron | 40.0% | |
| AGTCCAGTATGAACATGTGA+GGG | - | chr6_3:71203295-71203314 | Msa0958130:intron | 40.0% | |
| AATCCCTCACATGTTCATAC+TGG | + | chr6_3:71203301-71203320 | None:intergenic | 40.0% | |
| TGAGAACGACTTACAAAGAC+AGG | + | chr6_3:71203457-71203476 | None:intergenic | 40.0% | |
| ! | TGATAGTGCCTTACAAAGAC+AGG | - | chr6_3:71203716-71203735 | Msa0958130:CDS | 40.0% |
| GATAGTGCCTTACAAAGACA+GGG | - | chr6_3:71203717-71203736 | Msa0958130:CDS | 40.0% | |
| ATTTGGTCCCTGTCTTTGTA+AGG | + | chr6_3:71203727-71203746 | None:intergenic | 40.0% | |
| AAAGACAGGGACCAAATTAG+TGG | - | chr6_3:71203730-71203749 | Msa0958130:CDS | 40.0% | |
| TTTGATAAGGTTGCTGCTGT+TGG | - | chr6_3:71203865-71203884 | Msa0958130:intron | 40.0% | |
| ! | TTGGGGGTGCAAATATCAAA+AGG | + | chr6_3:71203961-71203980 | None:intergenic | 40.0% |
| ! | AATACTTCCACCTTGTTTGG+GGG | + | chr6_3:71203977-71203996 | None:intergenic | 40.0% |
| ! | GAATACTTCCACCTTGTTTG+GGG | + | chr6_3:71203978-71203997 | None:intergenic | 40.0% |
| ! | GGAATACTTCCACCTTGTTT+GGG | + | chr6_3:71203979-71203998 | None:intergenic | 40.0% |
| AGGAATACTTCCACCTTGTT+TGG | + | chr6_3:71203980-71203999 | None:intergenic | 40.0% | |
| AACAAAGGTGGTTTCAAACG+AGG | + | chr6_3:71204000-71204019 | None:intergenic | 40.0% | |
| ACCTGGGATGATTCATTTGA+AGG | - | chr6_3:71204080-71204099 | Msa0958130:intron | 40.0% | |
| CCTGGGATGATTCATTTGAA+GGG | - | chr6_3:71204081-71204100 | Msa0958130:intron | 40.0% | |
| GTATGTAGGGAATTAGGGTT+AGG | - | chr6_3:71204141-71204160 | Msa0958130:intron | 40.0% | |
| TACCAACCTAGTTATGAAGG+TGG | - | chr6_3:71204177-71204196 | Msa0958130:intron | 40.0% | |
| ACCAACCTAGTTATGAAGGT+GGG | - | chr6_3:71204178-71204197 | Msa0958130:intron | 40.0% | |
| TTGCAGAGACAACCAATGTT+AGG | + | chr6_3:71204320-71204339 | None:intergenic | 40.0% | |
| CAAATGTCTGGAGAGATCAA+GGG | + | chr6_3:71204387-71204406 | None:intergenic | 40.0% | |
| ACAAATGTCTGGAGAGATCA+AGG | + | chr6_3:71204388-71204407 | None:intergenic | 40.0% | |
| !! | AGTGAACAGAGTATCGATGA+AGG | - | chr6_3:71204724-71204743 | Msa0958130:intron | 40.0% |
| !! | GTGAACAGAGTATCGATGAA+GGG | - | chr6_3:71204725-71204744 | Msa0958130:intron | 40.0% |
| ! | GACACTGCAGAGTTTTTGTA+TGG | - | chr6_3:71204775-71204794 | Msa0958130:intron | 40.0% |
| TGATGAAAGGGATGTTGACA+AGG | - | chr6_3:71204798-71204817 | Msa0958130:CDS | 40.0% | |
| !! | GAAAGTTCTTCTGGAATCTG+GGG | - | chr6_3:71204825-71204844 | Msa0958130:CDS | 40.0% |
| !!! | GGGGATGTTTTAATCTTCGA+TGG | - | chr6_3:71204844-71204863 | Msa0958130:CDS | 40.0% |
| ATGGCTAGAAATGTCTTCCA+TGG | - | chr6_3:71204868-71204887 | Msa0958130:CDS | 40.0% | |
| GAAACTAATCTCCGTAAACC+TGG | - | chr6_3:71204937-71204956 | Msa0958130:five_prime_UTR | 40.0% | |
| AAAGTAAGATTCAATCGGCC+AGG | + | chr6_3:71204958-71204977 | None:intergenic | 40.0% | |
| ! | GAACCATTGGAGTTTTGCGA+TGG | + | chr6_3:71202759-71202778 | None:intergenic | 45.0% |
| AACTCCAATGGTTCCATTCG+CGG | - | chr6_3:71202765-71202784 | Msa0958130:CDS | 45.0% | |
| TTTGTGAAGAGACAGGATGG+TGG | + | chr6_3:71202815-71202834 | None:intergenic | 45.0% | |
| GTGTTTGTGAAGAGACAGGA+TGG | + | chr6_3:71202818-71202837 | None:intergenic | 45.0% | |
| !! | TTGAACGTTACCGGTGTTGT+GGG | + | chr6_3:71202846-71202865 | None:intergenic | 45.0% |
| ! | ATTGAACGTTACCGGTGTTG+TGG | + | chr6_3:71202847-71202866 | None:intergenic | 45.0% |
| TCCTCGGTATCAATTTCGGT+GGG | + | chr6_3:71203057-71203076 | None:intergenic | 45.0% | |
| TTCCTCGGTATCAATTTCGG+TGG | + | chr6_3:71203058-71203077 | None:intergenic | 45.0% | |
| !! | GTCTCTGGTTCGATTTTCCT+CGG | + | chr6_3:71203073-71203092 | None:intergenic | 45.0% |
| GAAGCATATCTCAAGGTCTC+TGG | + | chr6_3:71203088-71203107 | None:intergenic | 45.0% | |
| !! | GAAGTGTTGGTTTGAGACCT+TGG | + | chr6_3:71203123-71203142 | None:intergenic | 45.0% |
| !! | TAAAACCACTTGGGTTGGGT+TGG | + | chr6_3:71203150-71203169 | None:intergenic | 45.0% |
| CCGCCGCAATCAAATTGTTA+GGG | + | chr6_3:71203211-71203230 | None:intergenic | 45.0% | |
| CCCTAACAATTTGATTGCGG+CGG | - | chr6_3:71203208-71203227 | Msa0958130:intron | 45.0% | |
| ACCGCCGCAATCAAATTGTT+AGG | + | chr6_3:71203212-71203231 | None:intergenic | 45.0% | |
| CAAAGACAGGACCAATTTGG+TGG | + | chr6_3:71203444-71203463 | None:intergenic | 45.0% | |
| GATATTTGCACCCCCAAACA+AGG | - | chr6_3:71203964-71203983 | Msa0958130:intron | 45.0% | |
| AAAGGGGATGTGTTAAGACC+TGG | - | chr6_3:71204063-71204082 | Msa0958130:intron | 45.0% | |
| AAGGGGATGTGTTAAGACCT+GGG | - | chr6_3:71204064-71204083 | Msa0958130:intron | 45.0% | |
| CCCTTCAAATGAATCATCCC+AGG | + | chr6_3:71204084-71204103 | None:intergenic | 45.0% | |
| AGGGAATTAGGGTTAGGTGA+AGG | - | chr6_3:71204147-71204166 | Msa0958130:intron | 45.0% | |
| GAATTAGGGTTAGGTGAAGG+AGG | - | chr6_3:71204150-71204169 | Msa0958130:intron | 45.0% | |
| CCAACCTAGTTATGAAGGTG+GGG | - | chr6_3:71204179-71204198 | Msa0958130:intron | 45.0% | |
| ATAGCCCCACCTTCATAACT+AGG | + | chr6_3:71204186-71204205 | None:intergenic | 45.0% | |
| AATATCAGCGACCGTGTGAT+GGG | - | chr6_3:71204265-71204284 | Msa0958130:intron | 45.0% | |
| TGGAGAGATCAAGGGAAGTT+TGG | + | chr6_3:71204379-71204398 | None:intergenic | 45.0% | |
| TACGCTAAGAACGGTCAACT+TGG | - | chr6_3:71204420-71204439 | Msa0958130:intron | 45.0% | |
| TGTGGATGCAGTGTTGTCAA+TGG | + | chr6_3:71204644-71204663 | None:intergenic | 45.0% | |
| ! | GATAGAGTTTGCTTGCTTGC+AGG | - | chr6_3:71204690-71204709 | Msa0958130:intron | 45.0% |
| CCAATAGAGAATGACACCAC+TGG | + | chr6_3:71204754-71204773 | None:intergenic | 45.0% | |
| !! | CCAGTGGTGTCATTCTCTAT+TGG | - | chr6_3:71204751-71204770 | Msa0958130:intron | 45.0% |
| CAAGGCGAAGAAAGTTCTTC+TGG | - | chr6_3:71204816-71204835 | Msa0958130:CDS | 45.0% | |
| GATTCAATCGGCCAGGTTTA+CGG | + | chr6_3:71204951-71204970 | None:intergenic | 45.0% | |
| ! | GAACCATTGGAGTTTTGCGA+TGG | + | chr6_3:71202759-71202778 | None:intergenic | 45.0% |
| AACTCCAATGGTTCCATTCG+CGG | - | chr6_3:71202765-71202784 | Msa0958130:CDS | 45.0% | |
| TTTGTGAAGAGACAGGATGG+TGG | + | chr6_3:71202815-71202834 | None:intergenic | 45.0% | |
| GTGTTTGTGAAGAGACAGGA+TGG | + | chr6_3:71202818-71202837 | None:intergenic | 45.0% | |
| !! | TTGAACGTTACCGGTGTTGT+GGG | + | chr6_3:71202846-71202865 | None:intergenic | 45.0% |
| ! | ATTGAACGTTACCGGTGTTG+TGG | + | chr6_3:71202847-71202866 | None:intergenic | 45.0% |
| TCCTCGGTATCAATTTCGGT+GGG | + | chr6_3:71203057-71203076 | None:intergenic | 45.0% | |
| TTCCTCGGTATCAATTTCGG+TGG | + | chr6_3:71203058-71203077 | None:intergenic | 45.0% | |
| !! | GTCTCTGGTTCGATTTTCCT+CGG | + | chr6_3:71203073-71203092 | None:intergenic | 45.0% |
| GAAGCATATCTCAAGGTCTC+TGG | + | chr6_3:71203088-71203107 | None:intergenic | 45.0% | |
| !! | GAAGTGTTGGTTTGAGACCT+TGG | + | chr6_3:71203123-71203142 | None:intergenic | 45.0% |
| !! | TAAAACCACTTGGGTTGGGT+TGG | + | chr6_3:71203150-71203169 | None:intergenic | 45.0% |
| CCGCCGCAATCAAATTGTTA+GGG | + | chr6_3:71203211-71203230 | None:intergenic | 45.0% | |
| CCCTAACAATTTGATTGCGG+CGG | - | chr6_3:71203208-71203227 | Msa0958130:intron | 45.0% | |
| ACCGCCGCAATCAAATTGTT+AGG | + | chr6_3:71203212-71203231 | None:intergenic | 45.0% | |
| CAAAGACAGGACCAATTTGG+TGG | + | chr6_3:71203444-71203463 | None:intergenic | 45.0% | |
| GATATTTGCACCCCCAAACA+AGG | - | chr6_3:71203964-71203983 | Msa0958130:intron | 45.0% | |
| AAAGGGGATGTGTTAAGACC+TGG | - | chr6_3:71204063-71204082 | Msa0958130:intron | 45.0% | |
| AAGGGGATGTGTTAAGACCT+GGG | - | chr6_3:71204064-71204083 | Msa0958130:intron | 45.0% | |
| CCCTTCAAATGAATCATCCC+AGG | + | chr6_3:71204084-71204103 | None:intergenic | 45.0% | |
| AGGGAATTAGGGTTAGGTGA+AGG | - | chr6_3:71204147-71204166 | Msa0958130:intron | 45.0% | |
| GAATTAGGGTTAGGTGAAGG+AGG | - | chr6_3:71204150-71204169 | Msa0958130:intron | 45.0% | |
| CCAACCTAGTTATGAAGGTG+GGG | - | chr6_3:71204179-71204198 | Msa0958130:intron | 45.0% | |
| ATAGCCCCACCTTCATAACT+AGG | + | chr6_3:71204186-71204205 | None:intergenic | 45.0% | |
| AATATCAGCGACCGTGTGAT+GGG | - | chr6_3:71204265-71204284 | Msa0958130:intron | 45.0% | |
| TGGAGAGATCAAGGGAAGTT+TGG | + | chr6_3:71204379-71204398 | None:intergenic | 45.0% | |
| TACGCTAAGAACGGTCAACT+TGG | - | chr6_3:71204420-71204439 | Msa0958130:intron | 45.0% | |
| TGTGGATGCAGTGTTGTCAA+TGG | + | chr6_3:71204644-71204663 | None:intergenic | 45.0% | |
| ! | GATAGAGTTTGCTTGCTTGC+AGG | - | chr6_3:71204690-71204709 | Msa0958130:intron | 45.0% |
| CCAATAGAGAATGACACCAC+TGG | + | chr6_3:71204754-71204773 | None:intergenic | 45.0% | |
| !! | CCAGTGGTGTCATTCTCTAT+TGG | - | chr6_3:71204751-71204770 | Msa0958130:intron | 45.0% |
| CAAGGCGAAGAAAGTTCTTC+TGG | - | chr6_3:71204816-71204835 | Msa0958130:CDS | 45.0% | |
| GATTCAATCGGCCAGGTTTA+CGG | + | chr6_3:71204951-71204970 | None:intergenic | 45.0% | |
| !! | TTAAAAAAAAAAGATAATTT+AGG | - | chr6_3:71203391-71203410 | Msa0958130:CDS | 5.0% |
| !! | TTAAAAAAAAAAGATAATTT+AGG | - | chr6_3:71203391-71203410 | Msa0958130:CDS | 5.0% |
| TCGCCATCGCAAAACTCCAA+TGG | - | chr6_3:71202753-71202772 | Msa0958130:CDS | 50.0% | |
| ! | GAGACAGGATGGTGGTTGAA+TGG | + | chr6_3:71202807-71202826 | None:intergenic | 50.0% |
| AGCGGTGTTTGTGAAGAGAC+AGG | + | chr6_3:71202822-71202841 | None:intergenic | 50.0% | |
| ACCCACCGAAATTGATACCG+AGG | - | chr6_3:71203053-71203072 | Msa0958130:intron | 50.0% | |
| AGCTGCCGAAGCATATCTCA+AGG | + | chr6_3:71203095-71203114 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGTCTGGAAGTGT+TGG | + | chr6_3:71203136-71203155 | None:intergenic | 50.0% |
| GAGACTCATGGGGGCTAAAT+CGG | + | chr6_3:71203235-71203254 | None:intergenic | 50.0% | |
| ATTTGCACCCCCAAACAAGG+TGG | - | chr6_3:71203967-71203986 | Msa0958130:intron | 50.0% | |
| CCCCACCTTCATAACTAGGT+TGG | + | chr6_3:71204182-71204201 | None:intergenic | 50.0% | |
| GAATATCAGCGACCGTGTGA+TGG | - | chr6_3:71204264-71204283 | Msa0958130:intron | 50.0% | |
| ! | GGATTTAGGGTGTTTGGCCA+GGG | + | chr6_3:71204358-71204377 | None:intergenic | 50.0% |
| ! | TGGATTTAGGGTGTTTGGCC+AGG | + | chr6_3:71204359-71204378 | None:intergenic | 50.0% |
| ! | CGGTCAACTTGGTCTTCATC+AGG | - | chr6_3:71204431-71204450 | Msa0958130:intron | 50.0% |
| TGCTACGTGCTATAGCACTC+TGG | - | chr6_3:71204493-71204512 | Msa0958130:intron | 50.0% | |
| GTTTGCTTGCTTGCAGGACA+AGG | - | chr6_3:71204696-71204715 | Msa0958130:intron | 50.0% | |
| TATCGATGAAGGGTTGCCAG+TGG | - | chr6_3:71204735-71204754 | Msa0958130:intron | 50.0% | |
| GTTTCTTCAAGCAAGCGGCT+AGG | + | chr6_3:71204922-71204941 | None:intergenic | 50.0% | |
| TCGCCATCGCAAAACTCCAA+TGG | - | chr6_3:71202753-71202772 | Msa0958130:CDS | 50.0% | |
| ! | GAGACAGGATGGTGGTTGAA+TGG | + | chr6_3:71202807-71202826 | None:intergenic | 50.0% |
| AGCGGTGTTTGTGAAGAGAC+AGG | + | chr6_3:71202822-71202841 | None:intergenic | 50.0% | |
| ACCCACCGAAATTGATACCG+AGG | - | chr6_3:71203053-71203072 | Msa0958130:intron | 50.0% | |
| AGCTGCCGAAGCATATCTCA+AGG | + | chr6_3:71203095-71203114 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGTCTGGAAGTGT+TGG | + | chr6_3:71203136-71203155 | None:intergenic | 50.0% |
| GAGACTCATGGGGGCTAAAT+CGG | + | chr6_3:71203235-71203254 | None:intergenic | 50.0% | |
| ATTTGCACCCCCAAACAAGG+TGG | - | chr6_3:71203967-71203986 | Msa0958130:intron | 50.0% | |
| CCCCACCTTCATAACTAGGT+TGG | + | chr6_3:71204182-71204201 | None:intergenic | 50.0% | |
| GAATATCAGCGACCGTGTGA+TGG | - | chr6_3:71204264-71204283 | Msa0958130:intron | 50.0% | |
| ! | GGATTTAGGGTGTTTGGCCA+GGG | + | chr6_3:71204358-71204377 | None:intergenic | 50.0% |
| ! | TGGATTTAGGGTGTTTGGCC+AGG | + | chr6_3:71204359-71204378 | None:intergenic | 50.0% |
| ! | CGGTCAACTTGGTCTTCATC+AGG | - | chr6_3:71204431-71204450 | Msa0958130:intron | 50.0% |
| TGCTACGTGCTATAGCACTC+TGG | - | chr6_3:71204493-71204512 | Msa0958130:intron | 50.0% | |
| GTTTGCTTGCTTGCAGGACA+AGG | - | chr6_3:71204696-71204715 | Msa0958130:intron | 50.0% | |
| TATCGATGAAGGGTTGCCAG+TGG | - | chr6_3:71204735-71204754 | Msa0958130:intron | 50.0% | |
| GTTTCTTCAAGCAAGCGGCT+AGG | + | chr6_3:71204922-71204941 | None:intergenic | 50.0% | |
| ACGACCGCGAATGGAACCAT+TGG | + | chr6_3:71202772-71202791 | None:intergenic | 55.0% | |
| AACACGATCACGACCGCGAA+TGG | + | chr6_3:71202781-71202800 | None:intergenic | 55.0% | |
| GCTATAGCGCTGTAGCAGAG+CGG | - | chr6_3:71204589-71204608 | Msa0958130:intron | 55.0% | |
| ACGACCGCGAATGGAACCAT+TGG | + | chr6_3:71202772-71202791 | None:intergenic | 55.0% | |
| AACACGATCACGACCGCGAA+TGG | + | chr6_3:71202781-71202800 | None:intergenic | 55.0% | |
| GCTATAGCGCTGTAGCAGAG+CGG | - | chr6_3:71204589-71204608 | Msa0958130:intron | 55.0% | |
| AACACCGCTGCCCACAACAC+CGG | - | chr6_3:71202833-71202852 | Msa0958130:CDS | 60.0% | |
| !! | GTTACCGGTGTTGTGGGCAG+CGG | + | chr6_3:71202840-71202859 | None:intergenic | 60.0% |
| !! | CCACTTGGGTTGGGTTGGTC+TGG | + | chr6_3:71203145-71203164 | None:intergenic | 60.0% |
| CCAGACCAACCCAACCCAAG+TGG | - | chr6_3:71203142-71203161 | Msa0958130:intron | 60.0% | |
| GGGGGAACTGACCCATCACA+CGG | + | chr6_3:71204279-71204298 | None:intergenic | 60.0% | |
| AAGCGGCTAGGAGCAGTCTC+TGG | + | chr6_3:71204910-71204929 | None:intergenic | 60.0% | |
| AACACCGCTGCCCACAACAC+CGG | - | chr6_3:71202833-71202852 | Msa0958130:CDS | 60.0% | |
| !! | GTTACCGGTGTTGTGGGCAG+CGG | + | chr6_3:71202840-71202859 | None:intergenic | 60.0% |
| !! | CCACTTGGGTTGGGTTGGTC+TGG | + | chr6_3:71203145-71203164 | None:intergenic | 60.0% |
| CCAGACCAACCCAACCCAAG+TGG | - | chr6_3:71203142-71203161 | Msa0958130:intron | 60.0% | |
| GGGGGAACTGACCCATCACA+CGG | + | chr6_3:71204279-71204298 | None:intergenic | 60.0% | |
| AAGCGGCTAGGAGCAGTCTC+TGG | + | chr6_3:71204910-71204929 | None:intergenic | 60.0% | |
| GCTTCGGCAGCTTCGCTCCA+AGG | - | chr6_3:71203103-71203122 | Msa0958130:intron | 65.0% | |
| GCTTCGGCAGCTTCGCTCCA+AGG | - | chr6_3:71203103-71203122 | Msa0958130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 71202649 | 71204990 | 71202649 | ID=Msa0958130;Name=Msa0958130 |
| chr6_3 | mRNA | 71202649 | 71204990 | 71202649 | ID=Msa0958130-mRNA-1;Parent=Msa0958130;Name=Msa0958130-mRNA-1;_AED=0.16;_eAED=0.16;_QI=89|0.33|0.25|1|0.33|0.25|4|0|265 |
| chr6_3 | exon | 71202649 | 71202906 | 71202649 | ID=Msa0958130-mRNA-1:exon:12983;Parent=Msa0958130-mRNA-1 |
| chr6_3 | exon | 71203313 | 71203537 | 71203313 | ID=Msa0958130-mRNA-1:exon:12982;Parent=Msa0958130-mRNA-1 |
| chr6_3 | exon | 71203568 | 71203765 | 71203568 | ID=Msa0958130-mRNA-1:exon:12981;Parent=Msa0958130-mRNA-1 |
| chr6_3 | exon | 71204785 | 71204990 | 71204785 | ID=Msa0958130-mRNA-1:exon:12980;Parent=Msa0958130-mRNA-1 |
| chr6_3 | five_prime_UTR | 71204902 | 71204990 | 71204902 | ID=Msa0958130-mRNA-1:five_prime_utr;Parent=Msa0958130-mRNA-1 |
| chr6_3 | CDS | 71204785 | 71204901 | 71204785 | ID=Msa0958130-mRNA-1:cds;Parent=Msa0958130-mRNA-1 |
| chr6_3 | CDS | 71203568 | 71203765 | 71203568 | ID=Msa0958130-mRNA-1:cds;Parent=Msa0958130-mRNA-1 |
| chr6_3 | CDS | 71203313 | 71203537 | 71203313 | ID=Msa0958130-mRNA-1:cds;Parent=Msa0958130-mRNA-1 |
| chr6_3 | CDS | 71202649 | 71202906 | 71202649 | ID=Msa0958130-mRNA-1:cds;Parent=Msa0958130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
