AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959600 MtrunA17_Chr2g0305311 45.517 290 135 10 62 350 6 273 5.51e-65 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 121 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTATTAGCAAATTATT+TGG 0.134917 6_3:+76639577 Msa0959600:CDS
CCTCTTTGTCTCTAGAATTT+TGG 0.205491 6_3:-76640859 None:intergenic
GTCAAGCATTTGCATTAATA+AGG 0.213637 6_3:-76640837 None:intergenic
TGAACGGAGGCGCTTCTTAT+TGG 0.241740 6_3:-76639064 None:intergenic
ATTTAAAGATTTCCCGATAA+TGG 0.263080 6_3:+76639616 Msa0959600:CDS
TGCTGGATATGTCCATTCTA+TGG 0.272992 6_3:+76640661 Msa0959600:three_prime_UTR
AGTTAATTCATAGAATTCTT+TGG 0.292316 6_3:-76634689 None:intergenic
TCCACTCAGGCAGTTGATTT+AGG 0.306922 6_3:-76640956 None:intergenic
CATTCATAAAACTTCGCTTT+AGG 0.312809 6_3:-76640979 None:intergenic
AGCAAATTATTTGGGCCAAT+TGG 0.338084 6_3:+76639586 Msa0959600:CDS
GAAGCATTTGCCAATGTGTT+TGG 0.345306 6_3:+76640629 Msa0959600:three_prime_UTR
GTCATTATCCTGGTTCCATT+TGG 0.356509 6_3:-76639515 None:intergenic
CTTTAAATTGCCTTGCCAAT+TGG 0.357012 6_3:-76639601 None:intergenic
AAATTATTAGCAAATTATTT+GGG 0.372951 6_3:+76639578 Msa0959600:CDS
TCCCATCTTTCAACCATTAT+CGG 0.380780 6_3:-76639629 None:intergenic
TGTTTAAGAAACATTACAAA+TGG 0.399446 6_3:+76639885 Msa0959600:CDS
AGCCGAGATTGATTCTCTTA+AGG 0.409612 6_3:+76640775 Msa0959600:three_prime_UTR
TACTTGTAGGAATTGAGATA+TGG 0.409851 6_3:+76640253 Msa0959600:intron
CATCCTTCCATTTCTTTCCA+AGG 0.410334 6_3:-76639850 None:intergenic
CTTCACCTCCACCTTGGCTC+TGG 0.411054 6_3:+76639214 Msa0959600:CDS
ACATCAACCTCCCAGTATCT+TGG 0.412857 6_3:-76639328 None:intergenic
TCTCTAGCCTTGGAAAGAAA+TGG 0.416906 6_3:+76639843 Msa0959600:CDS
AAGTTTGTTGTTGATGATGA+TGG 0.421434 6_3:+76639800 Msa0959600:CDS
TTCCTTTCTTCGCTTACACT+TGG 0.431022 6_3:-76634661 None:intergenic
CAAATGGGAACTCGCATTAG+AGG 0.434765 6_3:+76639901 Msa0959600:CDS
CCCGATAATGGTTGAAAGAT+GGG 0.441650 6_3:+76639628 Msa0959600:CDS
ACGATGCGTTTGGAGTTGAT+AGG 0.445846 6_3:+76634575 Msa0959600:CDS
TCCCGATAATGGTTGAAAGA+TGG 0.446335 6_3:+76639627 Msa0959600:CDS
GTGATGTTTGTGCAATAGTT+TGG 0.446981 6_3:-76640891 None:intergenic
TATGTCCATTCTATGGGGCT+TGG 0.447173 6_3:+76640668 Msa0959600:three_prime_UTR
TTTGCTTCATAGAACGAACT+TGG 0.455155 6_3:-76634871 None:intergenic
GCAGATTGCCCCACCGGTTG+AGG 0.457756 6_3:-76639554 None:intergenic
AATCTCTACATTTGATGCAA+TGG 0.458071 6_3:-76634617 None:intergenic
AAATATGTTATCTCTAGCCT+TGG 0.458446 6_3:+76639833 Msa0959600:CDS
GGTGTCTCATGTGTGGGTGG+TGG 0.459191 6_3:-76639156 None:intergenic
ATCTCTACATTTGATGCAAT+GGG 0.460721 6_3:-76634616 None:intergenic
CCCATCTTTCAACCATTATC+GGG 0.460909 6_3:-76639628 None:intergenic
ATGGAATGATGTTCCTCAAC+CGG 0.463679 6_3:+76639541 Msa0959600:CDS
TCTTGTACACCCTTCATACA+AGG 0.470520 6_3:-76634728 None:intergenic
GTTTAAGAAACATTACAAAT+GGG 0.473095 6_3:+76639886 Msa0959600:CDS
TTCAGAAGTTGATGTCTTGA+AGG 0.473713 6_3:+76640805 Msa0959600:three_prime_UTR
GCTGGATATGTCCATTCTAT+GGG 0.475145 6_3:+76640662 Msa0959600:three_prime_UTR
AACATGATCAACGATGCGTT+TGG 0.485141 6_3:+76634565 None:intergenic
TTCTTTCTTTAGGTTGCGAA+TGG 0.485954 6_3:+76638961 Msa0959600:intron
ATGCCGAGGAATATAAAATC+AGG 0.488070 6_3:-76641002 None:intergenic
ATGTGGCGGGTCATACTTCA+AGG 0.488660 6_3:+76639456 Msa0959600:CDS
GAGTCAGTTCCTAGTGTATG+AGG 0.494286 6_3:-76640087 None:intergenic
TTCTATGAATTAACTAGAGA+TGG 0.494771 6_3:+76634697 Msa0959600:CDS
AAATCAAAGTTTGTACAAAC+CGG 0.496962 6_3:+76638985 Msa0959600:CDS
AATTTAGCAGATTGCCCCAC+CGG 0.499755 6_3:-76639560 None:intergenic
CGATGCGTTTGGAGTTGATA+GGG 0.504132 6_3:+76634576 Msa0959600:CDS
GATTGATTCTCTTAAGGAGA+AGG 0.517958 6_3:+76640781 Msa0959600:three_prime_UTR
CTTCACCTTCACCTCCACCT+TGG 0.519062 6_3:+76639208 Msa0959600:CDS
CGCTTCTTATTGGCTGCATG+TGG 0.521801 6_3:-76639054 None:intergenic
GCAGTTGATTTAGGTCCACT+TGG 0.522475 6_3:-76640947 None:intergenic
TTATGCCAAGCCCCATAGAA+TGG 0.524475 6_3:-76640673 None:intergenic
GATGGAGGTGTCTCATGTGT+GGG 0.525445 6_3:-76639162 None:intergenic
CAGAGCCAAGGTGGAGGTGA+AGG 0.530476 6_3:-76639213 None:intergenic
GGAGAACAACCCTTGTATGA+AGG 0.531000 6_3:+76634718 Msa0959600:CDS
ATTGGCTGCCTCAAGAGCTC+CGG 0.535808 6_3:-76639004 None:intergenic
GTGCTTGAAGAATCTCCAAA+TGG 0.542925 6_3:+76639500 Msa0959600:CDS
CTGTTATTTGTTAGATGTGG+CGG 0.545341 6_3:+76639442 Msa0959600:intron
TTCCAAGTGTAAGCGAAGAA+AGG 0.545769 6_3:+76634659 Msa0959600:CDS
ATTTGCCAATGTGTTTGGAA+AGG 0.548585 6_3:+76640634 Msa0959600:three_prime_UTR
ATTATTTGGGCCAATTGGCA+AGG 0.549492 6_3:+76639591 Msa0959600:CDS
TGTACAAACCGGAGCTCTTG+AGG 0.549980 6_3:+76638996 Msa0959600:CDS
GATATGGTCGAGAATATAGC+AGG 0.553453 6_3:+76640269 Msa0959600:three_prime_UTR
CTCCTTAAGAGAATCAATCT+CGG 0.554776 6_3:-76640777 None:intergenic
CCAAAATTCTAGAGACAAAG+AGG 0.558355 6_3:+76640859 Msa0959600:three_prime_UTR
TGCGATCAGAAAAGATGAGT+TGG 0.567830 6_3:+76640113 Msa0959600:three_prime_UTR
ATTCCATCGAGTCATTATCC+TGG 0.568967 6_3:-76639525 None:intergenic
TGATGGAGGTGTCTCATGTG+TGG 0.570539 6_3:-76639163 None:intergenic
GAGAACAACCCTTGTATGAA+GGG 0.572568 6_3:+76634719 Msa0959600:CDS
GGAGGTGAAGGTGAAGGTGA+AGG 0.576145 6_3:-76639201 None:intergenic
AATTTGTCAATGAATATGCA+AGG 0.581916 6_3:+76640332 Msa0959600:three_prime_UTR
CAGTTGATTTAGGTCCACTT+GGG 0.583159 6_3:-76640946 None:intergenic
AAGAAGCGCCTCCGTTCACA+AGG 0.583256 6_3:+76639069 Msa0959600:CDS
ACCTAAATCAACTGCCTGAG+TGG 0.584189 6_3:+76640955 Msa0959600:three_prime_UTR
GGAGGTGTCTCATGTGTGGG+TGG 0.585188 6_3:-76639159 None:intergenic
AAGAATCTCCAAATGGAACC+AGG 0.590266 6_3:+76639507 Msa0959600:CDS
GAATGATGTTCCTCAACCGG+TGG 0.591938 6_3:+76639544 Msa0959600:CDS
TGTTATTTGTTAGATGTGGC+GGG 0.593754 6_3:+76639443 Msa0959600:intron
CATCTCCAGAGCCAAGGTGG+AGG 0.598631 6_3:-76639219 None:intergenic
AATGATGTTCCTCAACCGGT+GGG 0.604945 6_3:+76639545 Msa0959600:CDS
GGTGAAGGTGTCACATATGT+AGG 0.605489 6_3:-76639114 None:intergenic
GTGTTTGGAAAGGAACATGC+TGG 0.608959 6_3:+76640644 Msa0959600:three_prime_UTR
GGTGAAGGTGTAACATGTGT+AGG 0.610224 6_3:-76639186 None:intergenic
GGTGTAACATGTGTAGGTGA+TGG 0.610882 6_3:-76639180 None:intergenic
GAACCAGGATAATGACTCGA+TGG 0.613463 6_3:+76639522 Msa0959600:CDS
CAAGGTGGAGGTGAAGGTGA+AGG 0.617229 6_3:-76639207 None:intergenic
CTTGGAAAGAAATGGAAGGA+TGG 0.617605 6_3:+76639851 Msa0959600:CDS
ACTTCGCTTTAGGTCCACTC+AGG 0.619511 6_3:-76640969 None:intergenic
CATCATCTCCAGAGCCAAGG+TGG 0.619952 6_3:-76639222 None:intergenic
ATATGGTCGAGAATATAGCA+GGG 0.620430 6_3:+76640270 Msa0959600:three_prime_UTR
GTAACATGATCATGCGGTGA+AGG 0.622373 6_3:-76639129 None:intergenic
TAGCCTTGGAAAGAAATGGA+AGG 0.623697 6_3:+76639847 Msa0959600:CDS
CTTGTACACCCTTCATACAA+GGG 0.624029 6_3:-76634727 None:intergenic
ATTTGTCAATGAATATGCAA+GGG 0.624585 6_3:+76640333 Msa0959600:three_prime_UTR
AAGAAAACAATTACAAAACT+CGG 0.624839 6_3:+76634892 Msa0959600:CDS
TGTTTCGCATAAAGATGCCA+AGG 0.628468 6_3:+76640306 Msa0959600:three_prime_UTR
TATATATAATCGATCCCAAG+TGG 0.631420 6_3:+76640932 Msa0959600:three_prime_UTR
GTAACATGTGTAGGTGATGG+AGG 0.632206 6_3:-76639177 None:intergenic
ATGTTCCTTTCCAAACACAT+TGG 0.633980 6_3:-76640639 None:intergenic
CATCATCATCTCCAGAGCCA+AGG 0.635353 6_3:-76639225 None:intergenic
CTGGATATGTCCATTCTATG+GGG 0.638420 6_3:+76640663 Msa0959600:three_prime_UTR
GAGCGACTAGAGATTCGAGA+TGG 0.640237 6_3:-76640698 None:intergenic
TGATAGGGATCAGACAAATG+AGG 0.644394 6_3:+76634591 Msa0959600:CDS
ATTAGCCTCGATGGAAGACG+AGG 0.645771 6_3:-76640732 None:intergenic
TATGGTCGAGAATATAGCAG+GGG 0.665151 6_3:+76640271 Msa0959600:three_prime_UTR
GTTTCGCATAAAGATGCCAA+GGG 0.672067 6_3:+76640307 Msa0959600:three_prime_UTR
AAGCTGAACTATGTATGCCG+AGG 0.679499 6_3:-76641016 None:intergenic
GTGGTAAACCTTGTGAACGG+AGG 0.698715 6_3:-76639035 None:intergenic
GTGGTAAACCTTGTGAACGG+AGG 0.698715 6_3:-76639077 None:intergenic
ATTAGCCTCGTCTTCCATCG+AGG 0.707505 6_3:+76640727 Msa0959600:three_prime_UTR
AAAGAAACCAAGATACTGGG+AGG 0.708954 6_3:+76639321 Msa0959600:CDS
ATGATGTTCCTCAACCGGTG+GGG 0.710243 6_3:+76639546 Msa0959600:CDS
CATGTGGTAAACCTTGTGAA+CGG 0.710378 6_3:-76639038 None:intergenic
CATGTGGTAAACCTTGTGAA+CGG 0.710378 6_3:-76639080 None:intergenic
TTCAAGGAGACGTTTAACAG+TGG 0.713812 6_3:+76639472 Msa0959600:CDS
GTAGGCTGTGAAGCTGCATG+TGG 0.744584 6_3:-76639096 None:intergenic
GGATCTGTAACATGATCATG+CGG 0.757065 6_3:-76639135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTATTAGCAAATTATT+TGG + chr6_3:76639577-76639596 Msa0959600:CDS 10.0%
!! AAATTATTAGCAAATTATTT+GGG + chr6_3:76639578-76639597 Msa0959600:CDS 10.0%
!! TATTGAAAATAATATGATTG+TGG + chr6_3:76636672-76636691 Msa0959600:intron 15.0%
!! TAATATGAAATAACCAAATA+GGG + chr6_3:76637081-76637100 Msa0959600:intron 15.0%
!! AGTATATTTAAGAAAGATTA+TGG + chr6_3:76638585-76638604 Msa0959600:intron 15.0%
!! GATAAAAACTAAATTGAAAA+CGG - chr6_3:76638723-76638742 None:intergenic 15.0%
!!! TTTCAATTTAGTTTTTATCT+AGG + chr6_3:76638724-76638743 Msa0959600:intron 15.0%
!!! TAGAGATAACATATTTTTTA+TGG - chr6_3:76639829-76639848 None:intergenic 15.0%
!!! AATGTCAAACATTTAATTTT+AGG - chr6_3:76640426-76640445 None:intergenic 15.0%
!! AGTTAATTCATAGAATTCTT+TGG - chr6_3:76634692-76634711 None:intergenic 20.0%
!!! AATGATTTTAGAGCTATTAA+AGG + chr6_3:76634825-76634844 Msa0959600:intron 20.0%
!! AAGAAAACAATTACAAAACT+CGG + chr6_3:76634892-76634911 Msa0959600:CDS 20.0%
!! AAATTTGTAACACTTCAAAA+TGG + chr6_3:76634995-76635014 Msa0959600:intron 20.0%
!!! ATATGATTCTTTTAAGAAAG+AGG + chr6_3:76635497-76635516 Msa0959600:intron 20.0%
!! GTCTTAAAAATAGCAATAAA+TGG + chr6_3:76635646-76635665 Msa0959600:intron 20.0%
!! CAAACTACTAAATTATTGAA+GGG - chr6_3:76636646-76636665 None:intergenic 20.0%
!! ACAAACTACTAAATTATTGA+AGG - chr6_3:76636647-76636666 None:intergenic 20.0%
!! TCAATTTGTACATCATTAAT+AGG - chr6_3:76636867-76636886 None:intergenic 20.0%
!! CTAATATGAAATAACCAAAT+AGG + chr6_3:76637080-76637099 Msa0959600:intron 20.0%
!! TTATTAAAAACACAAAACTG+TGG + chr6_3:76637444-76637463 Msa0959600:intron 20.0%
!!! TATCTATTTTAATGCTTCTT+GGG - chr6_3:76637632-76637651 None:intergenic 20.0%
!!! TTATCTATTTTAATGCTTCT+TGG - chr6_3:76637633-76637652 None:intergenic 20.0%
!! AAGCATTAAAATAGATAAGT+TGG + chr6_3:76637635-76637654 Msa0959600:intron 20.0%
!! AGCATTAAAATAGATAAGTT+GGG + chr6_3:76637636-76637655 Msa0959600:intron 20.0%
!!! TTTGTTCTAAATTTTGTGAT+GGG - chr6_3:76637865-76637884 None:intergenic 20.0%
!!! ATTTGTTCTAAATTTTGTGA+TGG - chr6_3:76637866-76637885 None:intergenic 20.0%
!! ATAACATAAATTTACCACTA+AGG + chr6_3:76638681-76638700 Msa0959600:intron 20.0%
!!! AATTTATGTTTTAACAGACA+AGG + chr6_3:76638816-76638835 Msa0959600:intron 20.0%
!! GAGCTTTCATATATAAATAT+TGG + chr6_3:76638936-76638955 Msa0959600:intron 20.0%
!! AATATTGGAATTCTTTCTTT+AGG + chr6_3:76638951-76638970 Msa0959600:intron 20.0%
!!! CTGTTATTGATTGTTTTAAA+TGG + chr6_3:76639409-76639428 Msa0959600:intron 20.0%
!!! GTTTTATGATAACAAAGTAA+AGG + chr6_3:76639682-76639701 Msa0959600:CDS 20.0%
!! TGTTTAAGAAACATTACAAA+TGG + chr6_3:76639885-76639904 Msa0959600:CDS 20.0%
!! GTTTAAGAAACATTACAAAT+GGG + chr6_3:76639886-76639905 Msa0959600:CDS 20.0%
!! ATTATTGTTTCAATTAATGC+AGG + chr6_3:76640020-76640039 Msa0959600:intron 20.0%
! TTCTATGAATTAACTAGAGA+TGG + chr6_3:76634697-76634716 Msa0959600:CDS 25.0%
!!! TGAAGTGTTACAAATTTTAC+AGG - chr6_3:76634992-76635011 None:intergenic 25.0%
! TTTGAACTCATTATACCAAA+TGG - chr6_3:76635294-76635313 None:intergenic 25.0%
! TGAGTTCAAATTATAGCATT+TGG + chr6_3:76635304-76635323 Msa0959600:intron 25.0%
!!! CAAAACATAAAGGTCATTTT+TGG + chr6_3:76635801-76635820 Msa0959600:intron 25.0%
!!! TTTTTCCTTTTTTTCTGGTT+TGG - chr6_3:76635894-76635913 None:intergenic 25.0%
! ACCAGAAAAAAAGGAAAAAA+AGG + chr6_3:76635895-76635914 Msa0959600:intron 25.0%
!!! TCCTTTTTTTCCTTTTTTTC+TGG - chr6_3:76635899-76635918 None:intergenic 25.0%
! AAAAAAAGGAAAAAAAGGAC+AGG + chr6_3:76635900-76635919 Msa0959600:intron 25.0%
! TATTCTTTGAACTTCCATAT+TGG + chr6_3:76635973-76635992 Msa0959600:intron 25.0%
! TGAAAATGGAAAAATTTCTC+CGG + chr6_3:76636160-76636179 Msa0959600:intron 25.0%
! TCATTCTTTAGACAATTATG+TGG + chr6_3:76636416-76636435 Msa0959600:intron 25.0%
!! AGTATTGAATGTTGAAGATT+TGG + chr6_3:76636442-76636461 Msa0959600:intron 25.0%
! ATGATTGTGGTTCAATTTAT+AGG + chr6_3:76636685-76636704 Msa0959600:intron 25.0%
! ATACATGAGATTCTTACATA+CGG + chr6_3:76636780-76636799 Msa0959600:intron 25.0%
! AACCTTCTTACTTTATCAAA+AGG - chr6_3:76637372-76637391 None:intergenic 25.0%
! TATAACAATCACAAGTACAT+CGG - chr6_3:76638016-76638035 None:intergenic 25.0%
! AGAACTTAAAAAAAAGATGG+TGG + chr6_3:76638262-76638281 Msa0959600:intron 25.0%
! AATTTATGTTATGTACACAG+TGG - chr6_3:76638673-76638692 None:intergenic 25.0%
! AAATCAAAGTTTGTACAAAC+CGG + chr6_3:76638985-76639004 Msa0959600:CDS 25.0%
! ATAAAAAGAAACCAAGATAC+TGG + chr6_3:76639317-76639336 Msa0959600:CDS 25.0%
! TAAAAAGAAACCAAGATACT+GGG + chr6_3:76639318-76639337 Msa0959600:CDS 25.0%
! ATTTAAAGATTTCCCGATAA+TGG + chr6_3:76639616-76639635 Msa0959600:CDS 25.0%
! CAAAAAAAAATGCAAGAAGT+AGG + chr6_3:76640049-76640068 Msa0959600:CDS 25.0%
! TATCATATATGCTTACTTGT+AGG + chr6_3:76640240-76640259 Msa0959600:intron 25.0%
! AATTTGTCAATGAATATGCA+AGG + chr6_3:76640332-76640351 Msa0959600:three_prime_UTR 25.0%
! ATTTGTCAATGAATATGCAA+GGG + chr6_3:76640333-76640352 Msa0959600:three_prime_UTR 25.0%
!! TTTTTGCACAATTGAAAAAG+AGG + chr6_3:76640380-76640399 Msa0959600:intron 25.0%
!! TTCAATGTTATGACCTTTTT+AGG - chr6_3:76640464-76640483 None:intergenic 25.0%
ATCTCTACATTTGATGCAAT+GGG - chr6_3:76634619-76634638 None:intergenic 30.0%
AATCTCTACATTTGATGCAA+TGG - chr6_3:76634620-76634639 None:intergenic 30.0%
CAATAAAGCATACAATCGTT+GGG - chr6_3:76634946-76634965 None:intergenic 30.0%
! CAACGATTGTATGCTTTATT+GGG + chr6_3:76634945-76634964 Msa0959600:intron 30.0%
! AACGATTGTATGCTTTATTG+GGG + chr6_3:76634946-76634965 Msa0959600:intron 30.0%
AACACTTCAAAATGGAAATC+AGG + chr6_3:76635003-76635022 Msa0959600:intron 30.0%
ACACTTCAAAATGGAAATCA+GGG + chr6_3:76635004-76635023 Msa0959600:intron 30.0%
AGGATTGTGTTGTCAATAAT+AGG + chr6_3:76635031-76635050 Msa0959600:intron 30.0%
! AAATAACGAAGAACTTTTGC+AGG - chr6_3:76635066-76635085 None:intergenic 30.0%
!! CTTTTCAATCGAGGTTTTAA+TGG - chr6_3:76635090-76635109 None:intergenic 30.0%
ATAATGTCGATGATAATTCC+TGG + chr6_3:76635387-76635406 Msa0959600:intron 30.0%
TAGACATCGATATCATTTCT+TGG - chr6_3:76635423-76635442 None:intergenic 30.0%
!!! TTGCTATTTTTAAGACGACA+AGG - chr6_3:76635642-76635661 None:intergenic 30.0%
! TAGCAATAAATGGTGTTTTG+TGG + chr6_3:76635656-76635675 Msa0959600:intron 30.0%
! AGCAATAAATGGTGTTTTGT+GGG + chr6_3:76635657-76635676 Msa0959600:intron 30.0%
ACACAGATTTAGATTGAACA+AGG + chr6_3:76635704-76635723 Msa0959600:intron 30.0%
TCAACAGGTTCAAAACATAA+AGG + chr6_3:76635791-76635810 Msa0959600:intron 30.0%
! TTTTCTTCTTCCAAATTGGA+GGG - chr6_3:76635950-76635969 None:intergenic 30.0%
! ATGCTTTTCTTCTTCCAAAT+TGG - chr6_3:76635954-76635973 None:intergenic 30.0%
! ACATTTTTCTCGATATGCAT+CGG - chr6_3:76636029-76636048 None:intergenic 30.0%
AATACTGCTGAAACTTTAGT+AGG - chr6_3:76636383-76636402 None:intergenic 30.0%
! CAAGTTTAACTTCTTCAACA+AGG - chr6_3:76636562-76636581 None:intergenic 30.0%
CTTGTTGAAGAAGTTAAACT+TGG + chr6_3:76636560-76636579 Msa0959600:intron 30.0%
TGTCGAAAGGTAAATTATGT+CGG + chr6_3:76636613-76636632 Msa0959600:intron 30.0%
GGTTCAATTTATAGGTACTT+AGG + chr6_3:76636693-76636712 Msa0959600:intron 30.0%
TAGGAAACATTGAGACTAAA+TGG + chr6_3:76636814-76636833 Msa0959600:intron 30.0%
! TCCAACTCTAGGAAATAATT+CGG - chr6_3:76636901-76636920 None:intergenic 30.0%
! TGAGCTTGTAACTTTTCAAT+CGG - chr6_3:76636960-76636979 None:intergenic 30.0%
TAGTGTTCATAAACCCATTT+AGG + chr6_3:76637210-76637229 Msa0959600:intron 30.0%
! GTGACTAACTGTATGTTTTA+TGG + chr6_3:76637273-76637292 Msa0959600:intron 30.0%
CTAATGAGAACATCTTTATC+TGG - chr6_3:76637336-76637355 None:intergenic 30.0%
! GTCCTTTTGATAAAGTAAGA+AGG + chr6_3:76637367-76637386 Msa0959600:intron 30.0%
TGGATTCAAATTTCGAACAA+AGG + chr6_3:76637410-76637429 Msa0959600:intron 30.0%
TAATAGACATCATTGAGCTT+CGG + chr6_3:76637553-76637572 Msa0959600:intron 30.0%
TGCCAATGTTTAAATGTGAA+TGG + chr6_3:76637592-76637611 Msa0959600:intron 30.0%
GCCAATGTTTAAATGTGAAT+GGG + chr6_3:76637593-76637612 Msa0959600:intron 30.0%
AGCTCAAATGGTTTATTATG+TGG + chr6_3:76637736-76637755 Msa0959600:intron 30.0%
TTATTATGTGGATGATGAGA+AGG + chr6_3:76637748-76637767 Msa0959600:intron 30.0%
!!! TCTAAATTTTGTGATGGGTA+TGG - chr6_3:76637860-76637879 None:intergenic 30.0%
TCTTGCTAATTGTATATGTG+TGG - chr6_3:76637903-76637922 None:intergenic 30.0%
ATAACAATCACAAGTACATC+GGG - chr6_3:76638015-76638034 None:intergenic 30.0%
AAAGAAAAACTAGCAACAAG+AGG - chr6_3:76638138-76638157 None:intergenic 30.0%
GGCAGAACTTAAAAAAAAGA+TGG + chr6_3:76638259-76638278 Msa0959600:intron 30.0%
!!! TTTTGATGAACGTTTTGAAG+TGG - chr6_3:76638336-76638355 None:intergenic 30.0%
CTTCAAAACGTTCATCAAAA+AGG + chr6_3:76638336-76638355 Msa0959600:intron 30.0%
ATACATAATTACGTCCTTAG+TGG - chr6_3:76638698-76638717 None:intergenic 30.0%
! GGATGTTATGTCTTTTTATG+TGG + chr6_3:76638837-76638856 Msa0959600:intron 30.0%
AACAATAGCTGCTTGAATAT+TGG + chr6_3:76638899-76638918 Msa0959600:intron 30.0%
TAATCTAGTGTTCCTATTTG+TGG + chr6_3:76639361-76639380 Msa0959600:intron 30.0%
AATCTAGTGTTCCTATTTGT+GGG + chr6_3:76639362-76639381 Msa0959600:intron 30.0%
! ATGCTGTTATTTGTTAGATG+TGG + chr6_3:76639439-76639458 Msa0959600:intron 30.0%
!! AAGTTTGTTGTTGATGATGA+TGG + chr6_3:76639800-76639819 Msa0959600:CDS 30.0%
AAATATGTTATCTCTAGCCT+TGG + chr6_3:76639833-76639852 Msa0959600:CDS 30.0%
TACTTGTAGGAATTGAGATA+TGG + chr6_3:76640253-76640272 Msa0959600:intron 30.0%
! TTCATTGACAAATTTTCCCT+TGG - chr6_3:76640326-76640345 None:intergenic 30.0%
CACTGTATTATTGCCTAAAA+AGG + chr6_3:76640448-76640467 Msa0959600:intron 30.0%
GTCAAGCATTTGCATTAATA+AGG - chr6_3:76640840-76640859 None:intergenic 30.0%
TATATATAATCGATCCCAAG+TGG + chr6_3:76640932-76640951 Msa0959600:three_prime_UTR 30.0%
CATTCATAAAACTTCGCTTT+AGG - chr6_3:76640982-76641001 None:intergenic 30.0%
! ATGCCTGATTTTATATTCCT+CGG + chr6_3:76640999-76641018 Msa0959600:three_prime_UTR 30.0%
TATCACATCAAGTGTTTGTG+TGG + chr6_3:76634781-76634800 Msa0959600:intron 35.0%
ATCACATCAAGTGTTTGTGT+GGG + chr6_3:76634782-76634801 Msa0959600:intron 35.0%
TTTGCTTCATAGAACGAACT+TGG - chr6_3:76634874-76634893 None:intergenic 35.0%
CCAATAAAGCATACAATCGT+TGG - chr6_3:76634947-76634966 None:intergenic 35.0%
CCAACGATTGTATGCTTTAT+TGG + chr6_3:76634944-76634963 Msa0959600:intron 35.0%
CACTTCAAAATGGAAATCAG+GGG + chr6_3:76635005-76635024 Msa0959600:intron 35.0%
AAAATGGAAATCAGGGGAAA+AGG + chr6_3:76635011-76635030 Msa0959600:intron 35.0%
! GAAAACAGTCTTTTCAATCG+AGG - chr6_3:76635099-76635118 None:intergenic 35.0%
!! GCAGTTGATAATAACAACGA+TGG + chr6_3:76635153-76635172 Msa0959600:intron 35.0%
ATAACAACGATGGAATGATG+AGG + chr6_3:76635163-76635182 Msa0959600:intron 35.0%
AATTTGACCTGAAACACAGT+TGG + chr6_3:76635214-76635233 Msa0959600:intron 35.0%
TTTCTTGGCGAATATTTACC+AGG - chr6_3:76635408-76635427 None:intergenic 35.0%
TAAATCTGTGTCTCTGATGA+AGG - chr6_3:76635695-76635714 None:intergenic 35.0%
! TTGAACAAGGTTCGATTTGA+TGG + chr6_3:76635717-76635736 Msa0959600:intron 35.0%
GTAAAAAGCCAAAGAAAGCA+GGG + chr6_3:76635823-76635842 Msa0959600:intron 35.0%
!!! TCCTTTTTTTCTGGTTTGGA+GGG - chr6_3:76635890-76635909 None:intergenic 35.0%
!!! TTCCTTTTTTTCTGGTTTGG+AGG - chr6_3:76635891-76635910 None:intergenic 35.0%
! CTTTTCTTCTTCCAAATTGG+AGG - chr6_3:76635951-76635970 None:intergenic 35.0%
CTTTGAACTTCCATATTGGA+AGG + chr6_3:76635977-76635996 Msa0959600:intron 35.0%
AGAAGATTGTCCTTCCAATA+TGG - chr6_3:76635990-76636009 None:intergenic 35.0%
! CATTTTTCTCGATATGCATC+GGG - chr6_3:76636028-76636047 None:intergenic 35.0%
GCATATCGAGAAAAATGTGT+TGG + chr6_3:76636031-76636050 Msa0959600:intron 35.0%
! TTCCATTTTCATTGCACCAA+AGG - chr6_3:76636151-76636170 None:intergenic 35.0%
CCAGTCAAAGTAAAAATTGC+CGG - chr6_3:76636182-76636201 None:intergenic 35.0%
! TTTGACTGGTCAAAGTAAGA+GGG + chr6_3:76636193-76636212 Msa0959600:intron 35.0%
! ATGTTGCTTGAATAACCATC+AGG - chr6_3:76636251-76636270 None:intergenic 35.0%
!! CATTTCTAGATGCATTGACT+TGG + chr6_3:76636268-76636287 Msa0959600:intron 35.0%
!! TTGGAAGCTCTTAAGTTGAA+AGG + chr6_3:76636287-76636306 Msa0959600:intron 35.0%
GAAGTTGTTCCATCAATATG+TGG - chr6_3:76636334-76636353 None:intergenic 35.0%
AACTTCTACCTTTAGCCATT+CGG + chr6_3:76636348-76636367 Msa0959600:intron 35.0%
GGCATAAAGTGAGGATAATT+TGG - chr6_3:76636481-76636500 None:intergenic 35.0%
GAGGAAATATCATTTCCATG+TGG - chr6_3:76636502-76636521 None:intergenic 35.0%
GTTGAAGAAGTTAAACTTGG+AGG + chr6_3:76636563-76636582 Msa0959600:intron 35.0%
ATACATCCATCGATACTGAA+CGG - chr6_3:76636591-76636610 None:intergenic 35.0%
GACATAATTTACCTTTCGAC+AGG - chr6_3:76636614-76636633 None:intergenic 35.0%
GTAATAAAGCACAACCAGAA+GGG + chr6_3:76636736-76636755 Msa0959600:intron 35.0%
AGATTCTTACATACGGTTCA+AGG + chr6_3:76636787-76636806 Msa0959600:intron 35.0%
TGAGACTAAATGGAATCAAC+CGG + chr6_3:76636824-76636843 Msa0959600:intron 35.0%
TTAGATAGTCCTCAACTACA+GGG - chr6_3:76637004-76637023 None:intergenic 35.0%
ATTAGATAGTCCTCAACTAC+AGG - chr6_3:76637005-76637024 None:intergenic 35.0%
ATACTTCTGTACTCCCTATT+TGG - chr6_3:76637097-76637116 None:intergenic 35.0%
! TTCATAAAGAGTTTGCTCGT+TGG + chr6_3:76637173-76637192 Msa0959600:intron 35.0%
CAAACTCTGTGAACCTAAAT+GGG - chr6_3:76637226-76637245 None:intergenic 35.0%
AACAATCTTGACACCATTGA+TGG + chr6_3:76637309-76637328 Msa0959600:intron 35.0%
ATCTTTATCTGGTCCATCAA+TGG - chr6_3:76637325-76637344 None:intergenic 35.0%
TTCACTGCATACAATGTCAA+TGG + chr6_3:76637390-76637409 Msa0959600:intron 35.0%
! ACACAAAACTGTGGAGTTTT+TGG + chr6_3:76637453-76637472 Msa0959600:intron 35.0%
AATGATGCCCAAATGAGATT+TGG + chr6_3:76637507-76637526 Msa0959600:intron 35.0%
GCCCATTCACATTTAAACAT+TGG - chr6_3:76637597-76637616 None:intergenic 35.0%
TTTAATGCTTCTTGGGTTTG+TGG - chr6_3:76637625-76637644 None:intergenic 35.0%
GGGTGGAAATGATGAAATTA+TGG + chr6_3:76637823-76637842 Msa0959600:intron 35.0%
CAAACATCATCATCTGTAGT+CGG - chr6_3:76637926-76637945 None:intergenic 35.0%
TAACAATCACAAGTACATCG+GGG - chr6_3:76638014-76638033 None:intergenic 35.0%
TGCAAATAGCTAAGCAAAGT+AGG - chr6_3:76638163-76638182 None:intergenic 35.0%
GCAAGTTCTTGAGAGATAAT+TGG - chr6_3:76638299-76638318 None:intergenic 35.0%
TGAAGAGTTTATGCTTCATC+TGG + chr6_3:76638434-76638453 Msa0959600:intron 35.0%
! ATCACGTACAAGTTGACATT+CGG - chr6_3:76638488-76638507 None:intergenic 35.0%
ATAACCTATAACGTGCGTTT+GGG - chr6_3:76638539-76638558 None:intergenic 35.0%
AATAACCTATAACGTGCGTT+TGG - chr6_3:76638540-76638559 None:intergenic 35.0%
!! TTCTTTCTTTAGGTTGCGAA+TGG + chr6_3:76638961-76638980 Msa0959600:intron 35.0%
ATCTAGTGTTCCTATTTGTG+GGG + chr6_3:76639363-76639382 Msa0959600:intron 35.0%
! CTGTTATTTGTTAGATGTGG+CGG + chr6_3:76639442-76639461 Msa0959600:intron 35.0%
! TGTTATTTGTTAGATGTGGC+GGG + chr6_3:76639443-76639462 Msa0959600:intron 35.0%
AGCAAATTATTTGGGCCAAT+TGG + chr6_3:76639586-76639605 Msa0959600:CDS 35.0%
CTTTAAATTGCCTTGCCAAT+TGG - chr6_3:76639604-76639623 None:intergenic 35.0%
TCCCATCTTTCAACCATTAT+CGG - chr6_3:76639632-76639651 None:intergenic 35.0%
! ATGGGATGCTGCAATTTTAA+AGG + chr6_3:76639646-76639665 Msa0959600:CDS 35.0%
CAAAAAACTCCTCATACACT+AGG + chr6_3:76640078-76640097 Msa0959600:three_prime_UTR 35.0%
!! TCAGAAAAGATGAGTTGGTA+TGG + chr6_3:76640118-76640137 Msa0959600:intron 35.0%
ATATGGTCGAGAATATAGCA+GGG + chr6_3:76640270-76640289 Msa0959600:three_prime_UTR 35.0%
! TTAATTTTAGGCGAGCTATG+AGG - chr6_3:76640414-76640433 None:intergenic 35.0%
TCATGAACTGTTGTATATGC+AGG + chr6_3:76640565-76640584 Msa0959600:intron 35.0%
ATTTGCCAATGTGTTTGGAA+AGG + chr6_3:76640634-76640653 Msa0959600:three_prime_UTR 35.0%
ATGTTCCTTTCCAAACACAT+TGG - chr6_3:76640642-76640661 None:intergenic 35.0%
CTCCTTAAGAGAATCAATCT+CGG - chr6_3:76640780-76640799 None:intergenic 35.0%
! GATTGATTCTCTTAAGGAGA+AGG + chr6_3:76640781-76640800 Msa0959600:three_prime_UTR 35.0%
!! TTCAGAAGTTGATGTCTTGA+AGG + chr6_3:76640805-76640824 Msa0959600:three_prime_UTR 35.0%
!!! CCTCTTTGTCTCTAGAATTT+TGG - chr6_3:76640862-76640881 None:intergenic 35.0%
! CCAAAATTCTAGAGACAAAG+AGG + chr6_3:76640859-76640878 Msa0959600:three_prime_UTR 35.0%
GTGATGTTTGTGCAATAGTT+TGG - chr6_3:76640894-76640913 None:intergenic 35.0%
ATGCCGAGGAATATAAAATC+AGG - chr6_3:76641005-76641024 None:intergenic 35.0%
!! GCTTCTCTGTTTTAGACAAT+AGG + chr6_3:76641035-76641054 Msa0959600:three_prime_UTR 35.0%
TGATAGGGATCAGACAAATG+AGG + chr6_3:76634591-76634610 Msa0959600:CDS 40.0%
TTCCAAGTGTAAGCGAAGAA+AGG + chr6_3:76634659-76634678 Msa0959600:CDS 40.0%
TTCCTTTCTTCGCTTACACT+TGG - chr6_3:76634664-76634683 None:intergenic 40.0%
GAGAACAACCCTTGTATGAA+GGG + chr6_3:76634719-76634738 Msa0959600:CDS 40.0%
CTTGTACACCCTTCATACAA+GGG - chr6_3:76634730-76634749 None:intergenic 40.0%
TCTTGTACACCCTTCATACA+AGG - chr6_3:76634731-76634750 None:intergenic 40.0%
!! ATCCTAGAGATTCTGAAGCT+TGG + chr6_3:76635187-76635206 Msa0959600:intron 40.0%
TTCCAAGCTTCAGAATCTCT+AGG - chr6_3:76635192-76635211 None:intergenic 40.0%
ATGCAAACCAACTGTGTTTC+AGG - chr6_3:76635224-76635243 None:intergenic 40.0%
! AGTGACGGCTTTAATCCATT+TGG + chr6_3:76635276-76635295 Msa0959600:intron 40.0%
CTACTTACAACCTCTAGTCA+AGG + chr6_3:76635440-76635459 Msa0959600:intron 40.0%
TCAAGGAGTTGAAGGAGTTA+TGG + chr6_3:76635457-76635476 Msa0959600:intron 40.0%
TTGAAGGAGTTATGGACAAC+TGG + chr6_3:76635465-76635484 Msa0959600:intron 40.0%
AAGACGACAAGGTTTAGTGT+CGG - chr6_3:76635631-76635650 None:intergenic 40.0%
TGATGTCCAGATAACGTTAC+CGG - chr6_3:76635765-76635784 None:intergenic 40.0%
TGGACATCAAGTTCTTCAAC+AGG + chr6_3:76635776-76635795 Msa0959600:intron 40.0%
GGTAAAAAGCCAAAGAAAGC+AGG + chr6_3:76635822-76635841 Msa0959600:intron 40.0%
GCAGGGTTGGGAAAAAAAAA+AGG + chr6_3:76635840-76635859 Msa0959600:intron 40.0%
ACCCTCCAAACCAGAAAAAA+AGG + chr6_3:76635886-76635905 Msa0959600:intron 40.0%
ATCTTATGCCCATAGCTTCA+AGG - chr6_3:76636124-76636143 None:intergenic 40.0%
! GACCTTTGGTGCAATGAAAA+TGG + chr6_3:76636146-76636165 Msa0959600:intron 40.0%
! CCGGCAATTTTTACTTTGAC+TGG + chr6_3:76636179-76636198 Msa0959600:intron 40.0%
! CTTTGACTGGTCAAAGTAAG+AGG + chr6_3:76636192-76636211 Msa0959600:intron 40.0%
AAGAATATCACAGTGCCTGA+TGG + chr6_3:76636233-76636252 Msa0959600:intron 40.0%
TCATGATGGCCACATATTGA+TGG + chr6_3:76636322-76636341 Msa0959600:intron 40.0%
TATCCTCACTTTATGCCACA+TGG + chr6_3:76636484-76636503 Msa0959600:intron 40.0%
TTTCCATGTGGCATAAAGTG+AGG - chr6_3:76636490-76636509 None:intergenic 40.0%
ATGACAGTGAAGAATGATGG+AGG - chr6_3:76636521-76636540 None:intergenic 40.0%
TCCATCATTCTTCACTGTCA+TGG + chr6_3:76636520-76636539 Msa0959600:intron 40.0%
ACCATGACAGTGAAGAATGA+TGG - chr6_3:76636524-76636543 None:intergenic 40.0%
TACATCCATCGATACTGAAC+GGG - chr6_3:76636590-76636609 None:intergenic 40.0%
CGTAATAAAGCACAACCAGA+AGG + chr6_3:76636735-76636754 Msa0959600:intron 40.0%
! ACATACGGTTCAAGGTATCT+AGG + chr6_3:76636795-76636814 Msa0959600:intron 40.0%
GAGACTAAATGGAATCAACC+GGG + chr6_3:76636825-76636844 Msa0959600:intron 40.0%
GCCGAATTATTTCCTAGAGT+TGG + chr6_3:76636897-76636916 Msa0959600:intron 40.0%
! CCAATAGGTTTTCCAACTCT+AGG - chr6_3:76636912-76636931 None:intergenic 40.0%
CCTAGAGTTGGAAAACCTAT+TGG + chr6_3:76636909-76636928 Msa0959600:intron 40.0%
AGAGTTGGAAAACCTATTGG+TGG + chr6_3:76636912-76636931 Msa0959600:intron 40.0%
TAACGTGAAGATCCACCAAT+AGG - chr6_3:76636927-76636946 None:intergenic 40.0%
GTATGATACGAAGTCAGCTA+AGG + chr6_3:76637113-76637132 Msa0959600:intron 40.0%
!! TACTTCTGAGGTAGACAAGA+AGG + chr6_3:76637150-76637169 Msa0959600:intron 40.0%
GCAAACTCTGTGAACCTAAA+TGG - chr6_3:76637227-76637246 None:intergenic 40.0%
!! GTTCTCATTAGTCTTGCTCA+AGG + chr6_3:76637345-76637364 Msa0959600:intron 40.0%
ATGCCCAAATGAGATTTGGA+GGG + chr6_3:76637511-76637530 Msa0959600:intron 40.0%
ATCATTGAGCTTCGGTATGA+TGG + chr6_3:76637561-76637580 Msa0959600:intron 40.0%
GCTCATCATCTTCATGTTGT+CGG - chr6_3:76637697-76637716 None:intergenic 40.0%
ATGATGAGAAGGAAGAAGGA+TGG + chr6_3:76637759-76637778 Msa0959600:intron 40.0%
TCTCTTGGCTTCAAATGAAC+AGG - chr6_3:76637791-76637810 None:intergenic 40.0%
CCAAGAGACTTGTATGACAT+GGG + chr6_3:76637803-76637822 Msa0959600:intron 40.0%
GCAAGCAAAGTTCGAAAGAA+TGG + chr6_3:76638238-76638257 Msa0959600:intron 40.0%
!!! ACGTTTTGAAGTGGCAGAAT+AGG - chr6_3:76638327-76638346 None:intergenic 40.0%
TGGATAGAACTGTCAAACTG+TGG + chr6_3:76638857-76638876 Msa0959600:intron 40.0%
CATGTGGTAAACCTTGTGAA+CGG - chr6_3:76639041-76639060 None:intergenic 40.0%
CATGTGGTAAACCTTGTGAA+CGG - chr6_3:76639041-76639060 None:intergenic 40.0%
GGATCTGTAACATGATCATG+CGG - chr6_3:76639138-76639157 None:intergenic 40.0%
AAAGAAACCAAGATACTGGG+AGG + chr6_3:76639321-76639340 Msa0959600:CDS 40.0%
AAAAACACAGCCCCACAAAT+AGG - chr6_3:76639376-76639395 None:intergenic 40.0%
!!! GGCTGTGTTTTTTCTCTTGT+TGG + chr6_3:76639384-76639403 Msa0959600:intron 40.0%
TTCAAGGAGACGTTTAACAG+TGG + chr6_3:76639472-76639491 Msa0959600:CDS 40.0%
GTGCTTGAAGAATCTCCAAA+TGG + chr6_3:76639500-76639519 Msa0959600:CDS 40.0%
AAGAATCTCCAAATGGAACC+AGG + chr6_3:76639507-76639526 Msa0959600:CDS 40.0%
GTCATTATCCTGGTTCCATT+TGG - chr6_3:76639518-76639537 None:intergenic 40.0%
ATTCCATCGAGTCATTATCC+TGG - chr6_3:76639528-76639547 None:intergenic 40.0%
ATGGAATGATGTTCCTCAAC+CGG + chr6_3:76639541-76639560 Msa0959600:CDS 40.0%
ATTATTTGGGCCAATTGGCA+AGG + chr6_3:76639591-76639610 Msa0959600:CDS 40.0%
! TCCCGATAATGGTTGAAAGA+TGG + chr6_3:76639627-76639646 Msa0959600:CDS 40.0%
CCCATCTTTCAACCATTATC+GGG - chr6_3:76639631-76639650 None:intergenic 40.0%
! CCCGATAATGGTTGAAAGAT+GGG + chr6_3:76639628-76639647 Msa0959600:CDS 40.0%
!! TCTCTAGCCTTGGAAAGAAA+TGG + chr6_3:76639843-76639862 Msa0959600:CDS 40.0%
! TAGCCTTGGAAAGAAATGGA+AGG + chr6_3:76639847-76639866 Msa0959600:CDS 40.0%
CATCCTTCCATTTCTTTCCA+AGG - chr6_3:76639853-76639872 None:intergenic 40.0%
CTTGGAAAGAAATGGAAGGA+TGG + chr6_3:76639851-76639870 Msa0959600:CDS 40.0%
TGCGATCAGAAAAGATGAGT+TGG + chr6_3:76640113-76640132 Msa0959600:three_prime_UTR 40.0%
TCTGTGTATGCAATCTCATC+TGG + chr6_3:76640179-76640198 Msa0959600:intron 40.0%
GATATGGTCGAGAATATAGC+AGG + chr6_3:76640269-76640288 Msa0959600:three_prime_UTR 40.0%
TATGGTCGAGAATATAGCAG+GGG + chr6_3:76640271-76640290 Msa0959600:three_prime_UTR 40.0%
TGTTTCGCATAAAGATGCCA+AGG + chr6_3:76640306-76640325 Msa0959600:three_prime_UTR 40.0%
GTTTCGCATAAAGATGCCAA+GGG + chr6_3:76640307-76640326 Msa0959600:three_prime_UTR 40.0%
! GAAGCATTTGCCAATGTGTT+TGG + chr6_3:76640629-76640648 Msa0959600:three_prime_UTR 40.0%
TGCTGGATATGTCCATTCTA+TGG + chr6_3:76640661-76640680 Msa0959600:three_prime_UTR 40.0%
GCTGGATATGTCCATTCTAT+GGG + chr6_3:76640662-76640681 Msa0959600:three_prime_UTR 40.0%
CTGGATATGTCCATTCTATG+GGG + chr6_3:76640663-76640682 Msa0959600:three_prime_UTR 40.0%
!! CATTTTCTCATTAGCCTCGA+TGG - chr6_3:76640744-76640763 None:intergenic 40.0%
! AGCCGAGATTGATTCTCTTA+AGG + chr6_3:76640775-76640794 Msa0959600:three_prime_UTR 40.0%
! CAGTTGATTTAGGTCCACTT+GGG - chr6_3:76640949-76640968 None:intergenic 40.0%
! ACGATGCGTTTGGAGTTGAT+AGG + chr6_3:76634575-76634594 Msa0959600:CDS 45.0%
!! CGATGCGTTTGGAGTTGATA+GGG + chr6_3:76634576-76634595 Msa0959600:CDS 45.0%
GGAGAACAACCCTTGTATGA+AGG + chr6_3:76634718-76634737 Msa0959600:CDS 45.0%
ATACAATCGTTGGGACATGC+AGG - chr6_3:76634937-76634956 None:intergenic 45.0%
ATTGGGGTGAAGATGAAGAC+AGG + chr6_3:76634962-76634981 Msa0959600:intron 45.0%
TTGGGGTGAAGATGAAGACA+GGG + chr6_3:76634963-76634982 Msa0959600:intron 45.0%
TTCTTCATCAAAGACTGCCG+AGG + chr6_3:76635116-76635135 Msa0959600:intron 45.0%
TGCATGCCATCTCATATCCT+CGG - chr6_3:76635136-76635155 None:intergenic 45.0%
AATGCAAGACGCAAGTTTCG+CGG - chr6_3:76635252-76635271 None:intergenic 45.0%
CGTCTTGCATTAGCTAGTGA+CGG + chr6_3:76635261-76635280 Msa0959600:intron 45.0%
TTGTATGGGATGAGCACAAC+TGG - chr6_3:76635330-76635349 None:intergenic 45.0%
GTATCTTTCATGCACACCCA+TGG - chr6_3:76635360-76635379 None:intergenic 45.0%
ACCTCTAGTCAAGGAGTTGA+AGG + chr6_3:76635449-76635468 Msa0959600:intron 45.0%
TCCTTCAACTCCTTGACTAG+AGG - chr6_3:76635453-76635472 None:intergenic 45.0%
CATTACACGCAACCTTGATG+TGG + chr6_3:76635526-76635545 Msa0959600:intron 45.0%
GTCACTAATCGTCCACATCA+AGG - chr6_3:76635541-76635560 None:intergenic 45.0%
GTGGACGATTAGTGACTTTC+CGG + chr6_3:76635545-76635564 Msa0959600:intron 45.0%
TGGACGATTAGTGACTTTCC+GGG + chr6_3:76635546-76635565 Msa0959600:intron 45.0%
ATTAGTGACTTTCCGGGCTT+AGG + chr6_3:76635552-76635571 Msa0959600:intron 45.0%
! GCTTAGGTATGCTTTCTGGT+TGG + chr6_3:76635568-76635587 Msa0959600:intron 45.0%
TCTGGTTGGAACACATACAC+CGG + chr6_3:76635582-76635601 Msa0959600:intron 45.0%
ACACGAAGGACATGCAAAAC+CGG - chr6_3:76635604-76635623 None:intergenic 45.0%
!! TTAGTGTCGGTGTTACACGA+AGG - chr6_3:76635618-76635637 None:intergenic 45.0%
AAAGCCAAAGAAAGCAGGGT+TGG + chr6_3:76635827-76635846 Msa0959600:intron 45.0%
AAGCCAAAGAAAGCAGGGTT+GGG + chr6_3:76635828-76635847 Msa0959600:intron 45.0%
TTTCCCAACCCTGCTTTCTT+TGG - chr6_3:76635834-76635853 None:intergenic 45.0%
GGCAAGAAACAACCTACACA+AGG + chr6_3:76635861-76635880 Msa0959600:intron 45.0%
GGAAAAAAAGGACAGGCAAG+AGG + chr6_3:76635907-76635926 Msa0959600:intron 45.0%
CAGAAGATGACCCTCCAATT+TGG + chr6_3:76635937-76635956 Msa0959600:intron 45.0%
TCGAAGAGACCTTGAAGCTA+TGG + chr6_3:76636112-76636131 Msa0959600:intron 45.0%
CGAAGAGACCTTGAAGCTAT+GGG + chr6_3:76636113-76636132 Msa0959600:intron 45.0%
TGGGCATAAGATCTGACCTT+TGG + chr6_3:76636132-76636151 Msa0959600:intron 45.0%
GGAACGTTGAAGAGTCATGA+TGG + chr6_3:76636308-76636327 Msa0959600:intron 45.0%
AATGCTGTCCGAATGGCTAA+AGG - chr6_3:76636359-76636378 None:intergenic 45.0%
AGTAGGTAATGCTGTCCGAA+TGG - chr6_3:76636366-76636385 None:intergenic 45.0%
CTTCACTGTCATGGTTCACT+TGG + chr6_3:76636529-76636548 Msa0959600:intron 45.0%
GATGGATGTATCCTGTCGAA+AGG + chr6_3:76636600-76636619 Msa0959600:intron 45.0%
CAGAAGGGTCTATTGCAGAA+GGG + chr6_3:76636751-76636770 Msa0959600:intron 45.0%
GAAATAATTCGGCTACACGC+GGG - chr6_3:76636890-76636909 None:intergenic 45.0%
GGAAATAATTCGGCTACACG+CGG - chr6_3:76636891-76636910 None:intergenic 45.0%
AACAAACTGCCCTGTAGTTG+AGG + chr6_3:76636992-76637011 Msa0959600:intron 45.0%
TAGTGCAAGGACTACTTCTG+AGG + chr6_3:76637138-76637157 Msa0959600:intron 45.0%
!!! TGTGGAGTTTTTGGCGTGTT+TGG + chr6_3:76637462-76637481 Msa0959600:intron 45.0%
!!! GTGGAGTTTTTGGCGTGTTT+GGG + chr6_3:76637463-76637482 Msa0959600:intron 45.0%
GATGCCCAAATGAGATTTGG+AGG + chr6_3:76637510-76637529 Msa0959600:intron 45.0%
TGCCCAAATGAGATTTGGAG+GGG + chr6_3:76637512-76637531 Msa0959600:intron 45.0%
CACCCCTCCAAATCTCATTT+GGG - chr6_3:76637517-76637536 None:intergenic 45.0%
TCACCCCTCCAAATCTCATT+TGG - chr6_3:76637518-76637537 None:intergenic 45.0%
TTTGGAGGGGTGACTTACTA+TGG + chr6_3:76637525-76637544 Msa0959600:intron 45.0%
GCTTCTGACGCTGTAATGAA+TGG - chr6_3:76637719-76637738 None:intergenic 45.0%
TACAGCGTCAGAAGCTCAAA+TGG + chr6_3:76637724-76637743 Msa0959600:intron 45.0%
GTGGATGATGAGAAGGAAGA+AGG + chr6_3:76637755-76637774 Msa0959600:intron 45.0%
GCCAAGAGACTTGTATGACA+TGG + chr6_3:76637802-76637821 Msa0959600:intron 45.0%
CCCATGTCATACAAGTCTCT+TGG - chr6_3:76637806-76637825 None:intergenic 45.0%
AGAGACTTGTATGACATGGG+TGG + chr6_3:76637806-76637825 Msa0959600:intron 45.0%
!! TGTGATGGGTATGGCTCAAT+GGG - chr6_3:76637851-76637870 None:intergenic 45.0%
!! TTGTGATGGGTATGGCTCAA+TGG - chr6_3:76637852-76637871 None:intergenic 45.0%
TCGAACTTTGCTTGCTCGTA+TGG - chr6_3:76638233-76638252 None:intergenic 45.0%
CGAAATTAGTGAGACTGACG+TGG - chr6_3:76638462-76638481 None:intergenic 45.0%
!!! TGAACGGAGGCGCTTTTTAT+TGG - chr6_3:76639025-76639044 None:intergenic 45.0%
!! GGTGAAGGTGTCACATATGT+AGG - chr6_3:76639117-76639136 None:intergenic 45.0%
GTAACATGATCATGCGGTGA+AGG - chr6_3:76639132-76639151 None:intergenic 45.0%
! GTAACATGTGTAGGTGATGG+AGG - chr6_3:76639180-76639199 None:intergenic 45.0%
GGTGTAACATGTGTAGGTGA+TGG - chr6_3:76639183-76639202 None:intergenic 45.0%
! GGTGAAGGTGTAACATGTGT+AGG - chr6_3:76639189-76639208 None:intergenic 45.0%
ACATCAACCTCCCAGTATCT+TGG - chr6_3:76639331-76639350 None:intergenic 45.0%
GAACCAGGATAATGACTCGA+TGG + chr6_3:76639522-76639541 Msa0959600:CDS 45.0%
AATGATGTTCCTCAACCGGT+GGG + chr6_3:76639545-76639564 Msa0959600:CDS 45.0%
AATTTAGCAGATTGCCCCAC+CGG - chr6_3:76639563-76639582 None:intergenic 45.0%
CAAATGGGAACTCGCATTAG+AGG + chr6_3:76639901-76639920 Msa0959600:CDS 45.0%
GAGTCAGTTCCTAGTGTATG+AGG - chr6_3:76640090-76640109 None:intergenic 45.0%
GTGTTTGGAAAGGAACATGC+TGG + chr6_3:76640644-76640663 Msa0959600:three_prime_UTR 45.0%
TATGTCCATTCTATGGGGCT+TGG + chr6_3:76640668-76640687 Msa0959600:three_prime_UTR 45.0%
TTATGCCAAGCCCCATAGAA+TGG - chr6_3:76640676-76640695 None:intergenic 45.0%
! GCAGTTGATTTAGGTCCACT+TGG - chr6_3:76640950-76640969 None:intergenic 45.0%
ACCTAAATCAACTGCCTGAG+TGG + chr6_3:76640955-76640974 Msa0959600:three_prime_UTR 45.0%
! TCCACTCAGGCAGTTGATTT+AGG - chr6_3:76640959-76640978 None:intergenic 45.0%
AAGCTGAACTATGTATGCCG+AGG - chr6_3:76641019-76641038 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAACT+TGG - chr6_3:76639947-76639966 None:intergenic 5.0%
!!! AGTTTTTTTTTTTTTTTTTA+AGG - chr6_3:76639985-76640004 None:intergenic 5.0%
AGACTGCCGAGGATATGAGA+TGG + chr6_3:76635127-76635146 Msa0959600:intron 50.0%
TCCCATACAACACTCCTCCA+TGG + chr6_3:76635340-76635359 Msa0959600:intron 50.0%
!! CCCATGGAGGAGTGTTGTAT+GGG - chr6_3:76635344-76635363 None:intergenic 50.0%
CCCATACAACACTCCTCCAT+GGG + chr6_3:76635341-76635360 Msa0959600:intron 50.0%
!! ACCCATGGAGGAGTGTTGTA+TGG - chr6_3:76635345-76635364 None:intergenic 50.0%
TCTTTCATGCACACCCATGG+AGG - chr6_3:76635357-76635376 None:intergenic 50.0%
GGAGTTATGGACAACTGGTG+TGG + chr6_3:76635470-76635489 Msa0959600:intron 50.0%
! CCAGAAAGCATACCTAAGCC+CGG - chr6_3:76635567-76635586 None:intergenic 50.0%
GCAAGAAATGCGTAGTCCAC+CGG + chr6_3:76635743-76635762 Msa0959600:intron 50.0%
AGTCCACCGGTAACGTTATC+TGG + chr6_3:76635756-76635775 Msa0959600:intron 50.0%
TGTCCAGATAACGTTACCGG+TGG - chr6_3:76635762-76635781 None:intergenic 50.0%
TTTGGAGGGTCACCTTGTGT+AGG - chr6_3:76635876-76635895 None:intergenic 50.0%
GGTCTCTTCGAGCATCAACA+TGG - chr6_3:76636103-76636122 None:intergenic 50.0%
CCTTCTGCAATAGACCCTTC+TGG - chr6_3:76636753-76636772 None:intergenic 50.0%
CCAGAAGGGTCTATTGCAGA+AGG + chr6_3:76636750-76636769 Msa0959600:intron 50.0%
GTCAGCTAAGGAGTAGTGCA+AGG + chr6_3:76637125-76637144 Msa0959600:intron 50.0%
! TGATGGGTATGGCTCAATGG+GGG - chr6_3:76637849-76637868 None:intergenic 50.0%
!! GTGATGGGTATGGCTCAATG+GGG - chr6_3:76637850-76637869 None:intergenic 50.0%
TCAGCCCAAACGCACGTTAT+AGG + chr6_3:76638532-76638551 Msa0959600:intron 50.0%
TGTACAAACCGGAGCTCTTG+AGG + chr6_3:76638996-76639015 Msa0959600:CDS 50.0%
!! AAAAAGCGCCTCCGTTCACA+AGG + chr6_3:76639027-76639046 Msa0959600:CDS 50.0%
GTGGTAAACCTTGTGAACGG+AGG - chr6_3:76639038-76639057 None:intergenic 50.0%
! CGCTTCTTATTGGCTGCATG+TGG - chr6_3:76639057-76639076 None:intergenic 50.0%
!! TGAACGGAGGCGCTTCTTAT+TGG - chr6_3:76639067-76639086 None:intergenic 50.0%
GTGGTAAACCTTGTGAACGG+AGG - chr6_3:76639038-76639057 None:intergenic 50.0%
!! GATGGAGGTGTCTCATGTGT+GGG - chr6_3:76639165-76639184 None:intergenic 50.0%
!! TGATGGAGGTGTCTCATGTG+TGG - chr6_3:76639166-76639185 None:intergenic 50.0%
CATCATCATCTCCAGAGCCA+AGG - chr6_3:76639228-76639247 None:intergenic 50.0%
!! ATGTGGCGGGTCATACTTCA+AGG + chr6_3:76639456-76639475 Msa0959600:CDS 50.0%
GAATGATGTTCCTCAACCGG+TGG + chr6_3:76639544-76639563 Msa0959600:CDS 50.0%
ATGATGTTCCTCAACCGGTG+GGG + chr6_3:76639546-76639565 Msa0959600:CDS 50.0%
GAGCGACTAGAGATTCGAGA+TGG - chr6_3:76640701-76640720 None:intergenic 50.0%
! ATTAGCCTCGTCTTCCATCG+AGG + chr6_3:76640727-76640746 Msa0959600:three_prime_UTR 50.0%
! ATTAGCCTCGATGGAAGACG+AGG - chr6_3:76640735-76640754 None:intergenic 50.0%
! ACTTCGCTTTAGGTCCACTC+AGG - chr6_3:76640972-76640991 None:intergenic 50.0%
CCGGGCTTAGGTATGCTTTC+TGG + chr6_3:76635564-76635583 Msa0959600:intron 55.0%
! GAGGTCCCGTTCAGTATCGA+TGG + chr6_3:76636582-76636601 Msa0959600:intron 55.0%
ATTGGCTGCCTCAAGAGCTC+CGG - chr6_3:76639007-76639026 None:intergenic 55.0%
!! AAGAAGCGCCTCCGTTCACA+AGG + chr6_3:76639069-76639088 Msa0959600:CDS 55.0%
GTAGGCTGTGAAGCTGCATG+TGG - chr6_3:76639099-76639118 None:intergenic 55.0%
GGAGGTGAAGGTGAAGGTGA+AGG - chr6_3:76639204-76639223 None:intergenic 55.0%
CAAGGTGGAGGTGAAGGTGA+AGG - chr6_3:76639210-76639229 None:intergenic 55.0%
CTTCACCTTCACCTCCACCT+TGG + chr6_3:76639208-76639227 Msa0959600:CDS 55.0%
CATCATCTCCAGAGCCAAGG+TGG - chr6_3:76639225-76639244 None:intergenic 55.0%
GGCTCATCGTCTACACGACC+CGG - chr6_3:76636846-76636865 None:intergenic 60.0%
GGTGTCTCATGTGTGGGTGG+TGG - chr6_3:76639159-76639178 None:intergenic 60.0%
!! GGAGGTGTCTCATGTGTGGG+TGG - chr6_3:76639162-76639181 None:intergenic 60.0%
CAGAGCCAAGGTGGAGGTGA+AGG - chr6_3:76639216-76639235 None:intergenic 60.0%
CTTCACCTCCACCTTGGCTC+TGG + chr6_3:76639214-76639233 Msa0959600:CDS 60.0%
CATCTCCAGAGCCAAGGTGG+AGG - chr6_3:76639222-76639241 None:intergenic 60.0%
! GCAGATTGCCCCACCGGTTG+AGG - chr6_3:76639557-76639576 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 76634568 76641107 76634568 ID=Msa0959600;Name=Msa0959600
chr6_3 mRNA 76634568 76641107 76634568 ID=Msa0959600-mRNA-1;Parent=Msa0959600;Name=Msa0959600-mRNA-1;_AED=0.19;_eAED=0.21;_QI=0|0.5|0.44|1|0.37|0.55|9|687|364
chr6_3 exon 76634568 76634791 76634568 ID=Msa0959600-mRNA-1:exon:13764;Parent=Msa0959600-mRNA-1
chr6_3 exon 76634847 76634913 76634847 ID=Msa0959600-mRNA-1:exon:13765;Parent=Msa0959600-mRNA-1
chr6_3 exon 76638973 76639146 76638973 ID=Msa0959600-mRNA-1:exon:13766;Parent=Msa0959600-mRNA-1
chr6_3 exon 76639154 76639355 76639154 ID=Msa0959600-mRNA-1:exon:13767;Parent=Msa0959600-mRNA-1
chr6_3 exon 76639456 76639703 76639456 ID=Msa0959600-mRNA-1:exon:13768;Parent=Msa0959600-mRNA-1
chr6_3 exon 76639797 76639947 76639797 ID=Msa0959600-mRNA-1:exon:13769;Parent=Msa0959600-mRNA-1
chr6_3 exon 76640042 76640134 76640042 ID=Msa0959600-mRNA-1:exon:13770;Parent=Msa0959600-mRNA-1
chr6_3 exon 76640262 76640363 76640262 ID=Msa0959600-mRNA-1:exon:13771;Parent=Msa0959600-mRNA-1
chr6_3 exon 76640587 76641107 76640587 ID=Msa0959600-mRNA-1:exon:13772;Parent=Msa0959600-mRNA-1
chr6_3 CDS 76634568 76634791 76634568 ID=Msa0959600-mRNA-1:cds;Parent=Msa0959600-mRNA-1
chr6_3 CDS 76634847 76634913 76634847 ID=Msa0959600-mRNA-1:cds;Parent=Msa0959600-mRNA-1
chr6_3 CDS 76638973 76639146 76638973 ID=Msa0959600-mRNA-1:cds;Parent=Msa0959600-mRNA-1
chr6_3 CDS 76639154 76639355 76639154 ID=Msa0959600-mRNA-1:cds;Parent=Msa0959600-mRNA-1
chr6_3 CDS 76639456 76639703 76639456 ID=Msa0959600-mRNA-1:cds;Parent=Msa0959600-mRNA-1
chr6_3 CDS 76639797 76639947 76639797 ID=Msa0959600-mRNA-1:cds;Parent=Msa0959600-mRNA-1
chr6_3 CDS 76640042 76640070 76640042 ID=Msa0959600-mRNA-1:cds;Parent=Msa0959600-mRNA-1
chr6_3 three_prime_UTR 76640071 76640134 76640071 ID=Msa0959600-mRNA-1:three_prime_utr;Parent=Msa0959600-mRNA-1
chr6_3 three_prime_UTR 76640262 76640363 76640262 ID=Msa0959600-mRNA-1:three_prime_utr;Parent=Msa0959600-mRNA-1
chr6_3 three_prime_UTR 76640587 76641107 76640587 ID=Msa0959600-mRNA-1:three_prime_utr;Parent=Msa0959600-mRNA-1
Gene Sequence

>Msa0959600

ATGATCAACGATGCGTTTGGAGTTGATAGGGATCAGACAAATGAGGTACCCATTGCATCAAATGTAGAGATTGATCGAGATGAAGATGTGATTCCAAGTGTAAGCGAAGAAAGGAATGAAGCCAAAGAATTCTATGAATTAACTAGAGATGGAGAACAACCCTTGTATGAAGGGTGTACAAGATATTCAAGATTGTCTTTTTTGTTAAAGTTGTATCACATCAAGATGCATTTGAATTTGCAAGTATTCCAAGTTCGTTCTATGAAGCAAAGAAAACAATTACAAAACTCGGTTGCGAATGGAAAATCAAAGTTTGTACAAACCGGAGCTCTTGAGGCAGCCAATAAAAAGCGCCTCCGTTCACAAGGTTTACCACATGCAGCCAATAAGAAGCGCCTCCGTTCACAAGGTTTACCACATGCAGCTTCACAGCCTACATATGTGACACCTTCACCGCATGATCATATCCACCACCCACACATGAGACACCTCCATCACCTACACATGTTACACCTTCACCTTCACCTTCACCTCCACCTTGGCTCTGGAGATGATGATGTAGATGATGATGTAGATGATGATGATGATGATGTAGATGAAGATGTAGATGAAGAGCTGAACATTACTGATAAAAAGAAACCAAGATACTGGGAGGTTGATGTTATAAATGTGGCGGGTCATACTTCAAGGAGACGTTTAACAGTGGCAGATGTGCTTGAAGAATCTCCAAATGGAACCAGGATAATGACTCGATGGAATGATGTTCCTCAACCGGTGGGGCAATCTGCTAAATTATTAGCAAATTATTTGGGCCAATTGGCAAGGCAATTTAAAGATTTCCCGATAATGGTTGAAAGATGGGATGCTGCAATTTTAAAGGAAAAGAAAACTGTGTTTTATGATAACAAAGTAAAGTCAAAGTTTGTTGTTGATGATGATGGAGACCATAAAAAATATGTTATCTCTAGCCTTGGAAAGAAATGGAAGGATGGAAAGTCTCGATTGTTTAAGAAACATTACAAATGGGAACTCGCATTAGAGGAGAATCTCAAAAAAAATCGTCCAAGCGATTGCAAAAAAAAATGCAAGAAGTAG
Protein sequence

>Msa0959600

MINDAFGVDRDQTNEVPIASNVEIDRDEDVIPSVSEERNEAKEFYELTRDGEQPLYEGCTRYSRLSFLLKLYHIKMHLNLQVFQVRSMKQRKQLQNSVANGKSKFVQTGALEAANKKRLRSQGLPHAANKKRLRSQGLPHAASQPTYVTPSPHDHIHHPHMRHLHHLHMLHLHLHLHLHLGSGDDDVDDDVDDDDDDVDEDVDEELNITDKKKPRYWEVDVINVAGHTSRRRLTVADVLEESPNGTRIMTRWNDVPQPVGQSAKLLANYLGQLARQFKDFPIMVERWDAAILKEKKTVFYDNKVKSKFVVDDDGDHKKYVISSLGKKWKDGKSRLFKKHYKWELALEENLKKNRPSDCKKKCKK*