AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0397750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397750 MtrunA17_Chr2g0305311 62.727 330 118 5 3 332 128 452 1.02e-142 412
Msa0397750 MtrunA17_Chr6g0467141 91.071 112 10 0 221 332 1 112 2.85e-68 210
Msa0397750 MtrunA17_Chr2g0309021 28.152 341 210 8 17 329 163 496 1.98e-39 145
Msa0397750 MtrunA17_Chr4g0011741 25.275 273 184 7 54 320 586 844 6.48e-12 66.6
Msa0397750 MtrunA17_Chr3g0086061 84.375 32 5 0 301 332 1 32 9.92e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397750 AT1G40087.1 27.760 317 213 6 18 325 36 345 1.62e-33 127
Msa0397750 AT3G30200.1 26.855 283 187 5 56 325 190 465 8.68e-25 105

Find 66 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTGTTAGCAAATTATT+TGG 0.143001 3_2:+17706199 Msa0397750:CDS
CGCTTGCATTTGCATTAATA+AGG 0.170991 3_2:-17707500 None:intergenic
TGCTGGATATGTCCGTTCTA+TGG 0.260226 3_2:+17707324 Msa0397750:CDS
ATTTAAAGATTTCCCGATAA+TGG 0.263080 3_2:+17706238 Msa0397750:CDS
GAAGCATTTGCCAATGTGTT+TGG 0.345306 3_2:+17707292 Msa0397750:CDS
GTCATTATCCTGGTTCCATT+TGG 0.356509 3_2:-17706137 None:intergenic
CTTTAAATTGCCTTGCCAAT+TGG 0.357012 3_2:-17706223 None:intergenic
AGCAAATTATTTGGGCCAAT+TGG 0.361732 3_2:+17706208 Msa0397750:CDS
TCCCATCTTTCAACCATTAT+CGG 0.380780 3_2:-17706251 None:intergenic
AAATTGTTAGCAAATTATTT+GGG 0.390691 3_2:+17706200 Msa0397750:CDS
TGTTTAAGAAACATTACAAA+TGG 0.399446 3_2:+17706507 Msa0397750:CDS
GCTGGATATGTCCGTTCTAT+GGG 0.400623 3_2:+17707325 Msa0397750:CDS
AGCCGAGATTGATTCTCTTA+AGG 0.409612 3_2:+17707438 Msa0397750:CDS
TACTTGTAGGAATTGAGATA+TGG 0.409851 3_2:+17706916 Msa0397750:intron
CATCCTTCCATTTCTTTCCA+AGG 0.410334 3_2:-17706472 None:intergenic
ACATCAACCTCCCAGTATCT+TGG 0.412857 3_2:-17705950 None:intergenic
TCTCTAGCCTTGGAAAGAAA+TGG 0.416906 3_2:+17706465 Msa0397750:CDS
AAGTTTGTTGTTGATGATGA+TGG 0.421434 3_2:+17706422 Msa0397750:CDS
CCCGATAATGGTTGAAAGAT+GGG 0.441650 3_2:+17706250 Msa0397750:CDS
TCCCGATAATGGTTGAAAGA+TGG 0.446335 3_2:+17706249 Msa0397750:CDS
ATGCGGTGGGTCATATTTCA+AGG 0.456814 3_2:+17706078 Msa0397750:CDS
GCAGATTGCCCCACCGGTTG+AGG 0.457756 3_2:-17706176 None:intergenic
AAATATGTTATCTCTAGCCT+TGG 0.458446 3_2:+17706455 Msa0397750:CDS
CCCATCTTTCAACCATTATC+GGG 0.460909 3_2:-17706250 None:intergenic
ATGGAATGATGTTCCTCAAC+CGG 0.463679 3_2:+17706163 Msa0397750:CDS
TATGTCCGTTCTATGGGGCT+TGG 0.464477 3_2:+17707331 Msa0397750:CDS
GTTTAAGAAACATTACAAAT+GGG 0.473095 3_2:+17706508 Msa0397750:CDS
TTCAGAAGTTGATGTCTTGA+AGG 0.473713 3_2:+17707468 Msa0397750:CDS
CAAATGGGAACTCACATTAG+AGG 0.477412 3_2:+17706523 Msa0397750:CDS
GAGTCAGTTCCTAGTGTATG+AGG 0.494286 3_2:-17706750 None:intergenic
AATTTAGCAGATTGCCCCAC+CGG 0.507605 3_2:-17706182 None:intergenic
GATTGATTCTCTTAAGGAGA+AGG 0.517958 3_2:+17707444 Msa0397750:CDS
TGATCTGGGTGACTAAAACT+TGG 0.518258 3_2:-17706566 None:intergenic
ATGTTATTTGTTAGATGCGG+TGG 0.519312 3_2:+17706064 Msa0397750:intron
GTGCTTGAAGAATCTCCAAA+TGG 0.542925 3_2:+17706122 Msa0397750:CDS
ATTTGCCAATGTGTTTGGAA+AGG 0.548585 3_2:+17707297 Msa0397750:CDS
ATTATTTGGGCCAATTGGCA+AGG 0.549492 3_2:+17706213 Msa0397750:CDS
GATATGGTCGAGAATATAGC+AGG 0.553453 3_2:+17706932 Msa0397750:CDS
CTCCTTAAGAGAATCAATCT+CGG 0.554776 3_2:-17707440 None:intergenic
TGCGATCAGAAAAGATGAGT+TGG 0.567830 3_2:+17706776 Msa0397750:CDS
ATTCCATCGAGTCATTATCC+TGG 0.568967 3_2:-17706147 None:intergenic
GTAAAATTCTAGAGACAAAG+AGG 0.578147 3_2:+17707522 Msa0397750:exon
AATTTGTCAATGAATATGCA+AGG 0.581916 3_2:+17706995 Msa0397750:CDS
TAGGAGGAAGGCTGAACAAG+TGG 0.584537 3_2:+17706610 Msa0397750:CDS
AAGAATCTCCAAATGGAACC+AGG 0.590266 3_2:+17706129 Msa0397750:CDS
GAATGATGTTCCTCAACCGG+TGG 0.591938 3_2:+17706166 Msa0397750:CDS
AATGATGTTCCTCAACCGGT+GGG 0.604945 3_2:+17706167 Msa0397750:CDS
GTGTTTGGAAAGGAACATGC+TGG 0.608959 3_2:+17707307 Msa0397750:CDS
GAACCAGGATAATGACTCGA+TGG 0.613463 3_2:+17706144 Msa0397750:CDS
CTTGGAAAGAAATGGAAGGA+TGG 0.617605 3_2:+17706473 Msa0397750:CDS
ATATGGTCGAGAATATAGCA+GGG 0.620430 3_2:+17706933 Msa0397750:CDS
TAGCCTTGGAAAGAAATGGA+AGG 0.623697 3_2:+17706469 Msa0397750:CDS
ATTTGTCAATGAATATGCAA+GGG 0.624585 3_2:+17706996 Msa0397750:CDS
TTATGCCAAGCCCCATAGAA+CGG 0.625942 3_2:-17707336 None:intergenic
TGTTTCGTATAAAGATGCCA+AGG 0.628012 3_2:+17706969 Msa0397750:CDS
ATGTTCCTTTCCAAACACAT+TGG 0.633980 3_2:-17707302 None:intergenic
GAGCGACTAGAGATTCGAGA+TGG 0.640237 3_2:-17707361 None:intergenic
GTTTCGTATAAAGATGCCAA+GGG 0.645104 3_2:+17706970 Msa0397750:CDS
ATTAGCCTCGATGGAAGACG+AGG 0.645771 3_2:-17707395 None:intergenic
TGTTATTTGTTAGATGCGGT+GGG 0.649326 3_2:+17706065 Msa0397750:intron
CTGGATATGTCCGTTCTATG+GGG 0.651362 3_2:+17707326 Msa0397750:CDS
TATGGTCGAGAATATAGCAG+GGG 0.665151 3_2:+17706934 Msa0397750:CDS
TTCAAGGAGACGTTTAACAG+TGG 0.691075 3_2:+17706094 Msa0397750:CDS
ATTAGCCTCGTCTTCCATCG+AGG 0.707505 3_2:+17707390 Msa0397750:CDS
AAAGAAACCAAGATACTGGG+AGG 0.708954 3_2:+17705943 Msa0397750:CDS
ATGATGTTCCTCAACCGGTG+GGG 0.710243 3_2:+17706168 Msa0397750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTATTGATTGTTTTAAA+TGG + chr3_2:17706031-17706050 Msa0397750:intron 15.0%
!! TAAATTGTTAGCAAATTATT+TGG + chr3_2:17706199-17706218 Msa0397750:CDS 15.0%
!! AAATTGTTAGCAAATTATTT+GGG + chr3_2:17706200-17706219 Msa0397750:CDS 15.0%
!!! TAGAGATAACATATTTTTTA+TGG - chr3_2:17706451-17706470 None:intergenic 15.0%
!!! AATGTCAAACATTTAATTTT+AGG - chr3_2:17707089-17707108 None:intergenic 15.0%
!!! TTGTTATTGATTGTTTTAAA+TGG + chr3_2:17706031-17706050 Msa0397750:intron 15.0%
!! TAAATTGTTAGCAAATTATT+TGG + chr3_2:17706199-17706218 Msa0397750:CDS 15.0%
!! AAATTGTTAGCAAATTATTT+GGG + chr3_2:17706200-17706219 Msa0397750:CDS 15.0%
!!! TAGAGATAACATATTTTTTA+TGG - chr3_2:17706451-17706470 None:intergenic 15.0%
!!! AATGTCAAACATTTAATTTT+AGG - chr3_2:17707089-17707108 None:intergenic 15.0%
!! TGTTTAAGAAACATTACAAA+TGG + chr3_2:17706507-17706526 Msa0397750:CDS 20.0%
!! GTTTAAGAAACATTACAAAT+GGG + chr3_2:17706508-17706527 Msa0397750:CDS 20.0%
!! ATTATTGTTTCAATTAATGC+AGG + chr3_2:17706683-17706702 Msa0397750:intron 20.0%
!! ATGTACATTATAAGATTGTT+TGG + chr3_2:17706865-17706884 Msa0397750:intron 20.0%
!!! TTTTTGAACAATTGAAAAAG+AGG + chr3_2:17707043-17707062 Msa0397750:intron 20.0%
!! TGTTTAAGAAACATTACAAA+TGG + chr3_2:17706507-17706526 Msa0397750:CDS 20.0%
!! GTTTAAGAAACATTACAAAT+GGG + chr3_2:17706508-17706527 Msa0397750:CDS 20.0%
!! ATTATTGTTTCAATTAATGC+AGG + chr3_2:17706683-17706702 Msa0397750:intron 20.0%
!! ATGTACATTATAAGATTGTT+TGG + chr3_2:17706865-17706884 Msa0397750:intron 20.0%
!!! TTTTTGAACAATTGAAAAAG+AGG + chr3_2:17707043-17707062 Msa0397750:intron 20.0%
! ATAAAAAGAAACCAAGATAC+TGG + chr3_2:17705939-17705958 Msa0397750:CDS 25.0%
! TAAAAAGAAACCAAGATACT+GGG + chr3_2:17705940-17705959 Msa0397750:CDS 25.0%
!! ATGATGTTATTTGTTAGATG+CGG + chr3_2:17706061-17706080 Msa0397750:intron 25.0%
! ATTTAAAGATTTCCCGATAA+TGG + chr3_2:17706238-17706257 Msa0397750:CDS 25.0%
!! GTTTTATGATAGCAAAGTAA+AGG + chr3_2:17706304-17706323 Msa0397750:CDS 25.0%
! CACAAAAAAATGCAAGAAAT+AGG + chr3_2:17706712-17706731 Msa0397750:CDS 25.0%
! AATTTGTCAATGAATATGCA+AGG + chr3_2:17706995-17707014 Msa0397750:CDS 25.0%
! ATTTGTCAATGAATATGCAA+GGG + chr3_2:17706996-17707015 Msa0397750:CDS 25.0%
! ATAAAAAGAAACCAAGATAC+TGG + chr3_2:17705939-17705958 Msa0397750:CDS 25.0%
! TAAAAAGAAACCAAGATACT+GGG + chr3_2:17705940-17705959 Msa0397750:CDS 25.0%
!! ATGATGTTATTTGTTAGATG+CGG + chr3_2:17706061-17706080 Msa0397750:intron 25.0%
! ATTTAAAGATTTCCCGATAA+TGG + chr3_2:17706238-17706257 Msa0397750:CDS 25.0%
!! GTTTTATGATAGCAAAGTAA+AGG + chr3_2:17706304-17706323 Msa0397750:CDS 25.0%
! CACAAAAAAATGCAAGAAAT+AGG + chr3_2:17706712-17706731 Msa0397750:CDS 25.0%
! AATTTGTCAATGAATATGCA+AGG + chr3_2:17706995-17707014 Msa0397750:CDS 25.0%
! ATTTGTCAATGAATATGCAA+GGG + chr3_2:17706996-17707015 Msa0397750:CDS 25.0%
TAATCTAGTGTTCCTATTTG+TGG + chr3_2:17705983-17706002 Msa0397750:intron 30.0%
AATCTAGTGTTCCTATTTGT+GGG + chr3_2:17705984-17706003 Msa0397750:intron 30.0%
!! AAGTTTGTTGTTGATGATGA+TGG + chr3_2:17706422-17706441 Msa0397750:CDS 30.0%
AAATATGTTATCTCTAGCCT+TGG + chr3_2:17706455-17706474 Msa0397750:CDS 30.0%
!!! CTGTTTTTGTCAATTTTAGG+AGG + chr3_2:17706594-17706613 Msa0397750:CDS 30.0%
!! TTTTGTCAATTTTAGGAGGA+AGG + chr3_2:17706598-17706617 Msa0397750:CDS 30.0%
TATCATATGTGCTTACTTGT+AGG + chr3_2:17706903-17706922 Msa0397750:intron 30.0%
TACTTGTAGGAATTGAGATA+TGG + chr3_2:17706916-17706935 Msa0397750:intron 30.0%
! TTCATTGACAAATTTTCCCT+TGG - chr3_2:17706989-17707008 None:intergenic 30.0%
TTCAATGTTATGACCTCTTT+AGG - chr3_2:17707127-17707146 None:intergenic 30.0%
! GTAAAATTCTAGAGACAAAG+AGG + chr3_2:17707522-17707541 Msa0397750:exon 30.0%
TAATCTAGTGTTCCTATTTG+TGG + chr3_2:17705983-17706002 Msa0397750:intron 30.0%
AATCTAGTGTTCCTATTTGT+GGG + chr3_2:17705984-17706003 Msa0397750:intron 30.0%
!! AAGTTTGTTGTTGATGATGA+TGG + chr3_2:17706422-17706441 Msa0397750:CDS 30.0%
AAATATGTTATCTCTAGCCT+TGG + chr3_2:17706455-17706474 Msa0397750:CDS 30.0%
!!! CTGTTTTTGTCAATTTTAGG+AGG + chr3_2:17706594-17706613 Msa0397750:CDS 30.0%
!! TTTTGTCAATTTTAGGAGGA+AGG + chr3_2:17706598-17706617 Msa0397750:CDS 30.0%
TATCATATGTGCTTACTTGT+AGG + chr3_2:17706903-17706922 Msa0397750:intron 30.0%
TACTTGTAGGAATTGAGATA+TGG + chr3_2:17706916-17706935 Msa0397750:intron 30.0%
! TTCATTGACAAATTTTCCCT+TGG - chr3_2:17706989-17707008 None:intergenic 30.0%
TTCAATGTTATGACCTCTTT+AGG - chr3_2:17707127-17707146 None:intergenic 30.0%
! GTAAAATTCTAGAGACAAAG+AGG + chr3_2:17707522-17707541 Msa0397750:exon 30.0%
ATCTAGTGTTCCTATTTGTG+GGG + chr3_2:17705985-17706004 Msa0397750:intron 35.0%
AAAAACAAAGCCCCACAAAT+AGG - chr3_2:17705998-17706017 None:intergenic 35.0%
!!! GGCTTTGTTTTTTCTCTTGT+TGG + chr3_2:17706006-17706025 Msa0397750:intron 35.0%
! ATGTTATTTGTTAGATGCGG+TGG + chr3_2:17706064-17706083 Msa0397750:intron 35.0%
! TGTTATTTGTTAGATGCGGT+GGG + chr3_2:17706065-17706084 Msa0397750:intron 35.0%
AGCAAATTATTTGGGCCAAT+TGG + chr3_2:17706208-17706227 Msa0397750:CDS 35.0%
CTTTAAATTGCCTTGCCAAT+TGG - chr3_2:17706226-17706245 None:intergenic 35.0%
TCCCATCTTTCAACCATTAT+CGG - chr3_2:17706254-17706273 None:intergenic 35.0%
! ATGGGATGCTGCAATTTTAA+AGG + chr3_2:17706268-17706287 Msa0397750:CDS 35.0%
! TTTTAGTCACCCAGATCATT+GGG + chr3_2:17706571-17706590 Msa0397750:CDS 35.0%
!!! GGGCTGTTTTTGTCAATTTT+AGG + chr3_2:17706591-17706610 Msa0397750:CDS 35.0%
CAAAAAACTCCTCATACACT+AGG + chr3_2:17706741-17706760 Msa0397750:CDS 35.0%
!! TCAGAAAAGATGAGTTGGTA+TGG + chr3_2:17706781-17706800 Msa0397750:intron 35.0%
ATATGGTCGAGAATATAGCA+GGG + chr3_2:17706933-17706952 Msa0397750:CDS 35.0%
TGTTTCGTATAAAGATGCCA+AGG + chr3_2:17706969-17706988 Msa0397750:CDS 35.0%
GTTTCGTATAAAGATGCCAA+GGG + chr3_2:17706970-17706989 Msa0397750:CDS 35.0%
! TTAATTTTAGGCGAGCTATG+AGG - chr3_2:17707077-17707096 None:intergenic 35.0%
CACTGTATTATTGCCTAAAG+AGG + chr3_2:17707111-17707130 Msa0397750:intron 35.0%
TCATGAACTGTTGTATATGC+AGG + chr3_2:17707228-17707247 Msa0397750:intron 35.0%
ATTTGCCAATGTGTTTGGAA+AGG + chr3_2:17707297-17707316 Msa0397750:CDS 35.0%
ATGTTCCTTTCCAAACACAT+TGG - chr3_2:17707305-17707324 None:intergenic 35.0%
CTCCTTAAGAGAATCAATCT+CGG - chr3_2:17707443-17707462 None:intergenic 35.0%
! GATTGATTCTCTTAAGGAGA+AGG + chr3_2:17707444-17707463 Msa0397750:CDS 35.0%
!! TTCAGAAGTTGATGTCTTGA+AGG + chr3_2:17707468-17707487 Msa0397750:CDS 35.0%
CGCTTGCATTTGCATTAATA+AGG - chr3_2:17707503-17707522 None:intergenic 35.0%
ATCTAGTGTTCCTATTTGTG+GGG + chr3_2:17705985-17706004 Msa0397750:intron 35.0%
AAAAACAAAGCCCCACAAAT+AGG - chr3_2:17705998-17706017 None:intergenic 35.0%
!!! GGCTTTGTTTTTTCTCTTGT+TGG + chr3_2:17706006-17706025 Msa0397750:intron 35.0%
! ATGTTATTTGTTAGATGCGG+TGG + chr3_2:17706064-17706083 Msa0397750:intron 35.0%
! TGTTATTTGTTAGATGCGGT+GGG + chr3_2:17706065-17706084 Msa0397750:intron 35.0%
AGCAAATTATTTGGGCCAAT+TGG + chr3_2:17706208-17706227 Msa0397750:CDS 35.0%
CTTTAAATTGCCTTGCCAAT+TGG - chr3_2:17706226-17706245 None:intergenic 35.0%
TCCCATCTTTCAACCATTAT+CGG - chr3_2:17706254-17706273 None:intergenic 35.0%
! ATGGGATGCTGCAATTTTAA+AGG + chr3_2:17706268-17706287 Msa0397750:CDS 35.0%
! TTTTAGTCACCCAGATCATT+GGG + chr3_2:17706571-17706590 Msa0397750:CDS 35.0%
!!! GGGCTGTTTTTGTCAATTTT+AGG + chr3_2:17706591-17706610 Msa0397750:CDS 35.0%
CAAAAAACTCCTCATACACT+AGG + chr3_2:17706741-17706760 Msa0397750:CDS 35.0%
!! TCAGAAAAGATGAGTTGGTA+TGG + chr3_2:17706781-17706800 Msa0397750:intron 35.0%
ATATGGTCGAGAATATAGCA+GGG + chr3_2:17706933-17706952 Msa0397750:CDS 35.0%
TGTTTCGTATAAAGATGCCA+AGG + chr3_2:17706969-17706988 Msa0397750:CDS 35.0%
GTTTCGTATAAAGATGCCAA+GGG + chr3_2:17706970-17706989 Msa0397750:CDS 35.0%
! TTAATTTTAGGCGAGCTATG+AGG - chr3_2:17707077-17707096 None:intergenic 35.0%
CACTGTATTATTGCCTAAAG+AGG + chr3_2:17707111-17707130 Msa0397750:intron 35.0%
TCATGAACTGTTGTATATGC+AGG + chr3_2:17707228-17707247 Msa0397750:intron 35.0%
ATTTGCCAATGTGTTTGGAA+AGG + chr3_2:17707297-17707316 Msa0397750:CDS 35.0%
ATGTTCCTTTCCAAACACAT+TGG - chr3_2:17707305-17707324 None:intergenic 35.0%
CTCCTTAAGAGAATCAATCT+CGG - chr3_2:17707443-17707462 None:intergenic 35.0%
! GATTGATTCTCTTAAGGAGA+AGG + chr3_2:17707444-17707463 Msa0397750:CDS 35.0%
!! TTCAGAAGTTGATGTCTTGA+AGG + chr3_2:17707468-17707487 Msa0397750:CDS 35.0%
CGCTTGCATTTGCATTAATA+AGG - chr3_2:17707503-17707522 None:intergenic 35.0%
AAAGAAACCAAGATACTGGG+AGG + chr3_2:17705943-17705962 Msa0397750:CDS 40.0%
TTCAAGGAGACGTTTAACAG+TGG + chr3_2:17706094-17706113 Msa0397750:CDS 40.0%
GTGCTTGAAGAATCTCCAAA+TGG + chr3_2:17706122-17706141 Msa0397750:CDS 40.0%
AAGAATCTCCAAATGGAACC+AGG + chr3_2:17706129-17706148 Msa0397750:CDS 40.0%
GTCATTATCCTGGTTCCATT+TGG - chr3_2:17706140-17706159 None:intergenic 40.0%
ATTCCATCGAGTCATTATCC+TGG - chr3_2:17706150-17706169 None:intergenic 40.0%
ATGGAATGATGTTCCTCAAC+CGG + chr3_2:17706163-17706182 Msa0397750:CDS 40.0%
ATTATTTGGGCCAATTGGCA+AGG + chr3_2:17706213-17706232 Msa0397750:CDS 40.0%
! TCCCGATAATGGTTGAAAGA+TGG + chr3_2:17706249-17706268 Msa0397750:CDS 40.0%
CCCATCTTTCAACCATTATC+GGG - chr3_2:17706253-17706272 None:intergenic 40.0%
! CCCGATAATGGTTGAAAGAT+GGG + chr3_2:17706250-17706269 Msa0397750:CDS 40.0%
!! TCTCTAGCCTTGGAAAGAAA+TGG + chr3_2:17706465-17706484 Msa0397750:CDS 40.0%
! TAGCCTTGGAAAGAAATGGA+AGG + chr3_2:17706469-17706488 Msa0397750:CDS 40.0%
CATCCTTCCATTTCTTTCCA+AGG - chr3_2:17706475-17706494 None:intergenic 40.0%
CTTGGAAAGAAATGGAAGGA+TGG + chr3_2:17706473-17706492 Msa0397750:CDS 40.0%
CAAATGGGAACTCACATTAG+AGG + chr3_2:17706523-17706542 Msa0397750:CDS 40.0%
TGATCTGGGTGACTAAAACT+TGG - chr3_2:17706569-17706588 None:intergenic 40.0%
!! GTTTTAGTCACCCAGATCAT+TGG + chr3_2:17706570-17706589 Msa0397750:CDS 40.0%
CAAAAACAGCCCAATGATCT+GGG - chr3_2:17706583-17706602 None:intergenic 40.0%
ACAAAAACAGCCCAATGATC+TGG - chr3_2:17706584-17706603 None:intergenic 40.0%
TGCGATCAGAAAAGATGAGT+TGG + chr3_2:17706776-17706795 Msa0397750:CDS 40.0%
GATATGGTCGAGAATATAGC+AGG + chr3_2:17706932-17706951 Msa0397750:CDS 40.0%
TATGGTCGAGAATATAGCAG+GGG + chr3_2:17706934-17706953 Msa0397750:CDS 40.0%
! GAAGCATTTGCCAATGTGTT+TGG + chr3_2:17707292-17707311 Msa0397750:CDS 40.0%
!! CATTTTCTCATTAGCCTCGA+TGG - chr3_2:17707407-17707426 None:intergenic 40.0%
! AGCCGAGATTGATTCTCTTA+AGG + chr3_2:17707438-17707457 Msa0397750:CDS 40.0%
AAAGAAACCAAGATACTGGG+AGG + chr3_2:17705943-17705962 Msa0397750:CDS 40.0%
TTCAAGGAGACGTTTAACAG+TGG + chr3_2:17706094-17706113 Msa0397750:CDS 40.0%
GTGCTTGAAGAATCTCCAAA+TGG + chr3_2:17706122-17706141 Msa0397750:CDS 40.0%
AAGAATCTCCAAATGGAACC+AGG + chr3_2:17706129-17706148 Msa0397750:CDS 40.0%
GTCATTATCCTGGTTCCATT+TGG - chr3_2:17706140-17706159 None:intergenic 40.0%
ATTCCATCGAGTCATTATCC+TGG - chr3_2:17706150-17706169 None:intergenic 40.0%
ATGGAATGATGTTCCTCAAC+CGG + chr3_2:17706163-17706182 Msa0397750:CDS 40.0%
ATTATTTGGGCCAATTGGCA+AGG + chr3_2:17706213-17706232 Msa0397750:CDS 40.0%
! TCCCGATAATGGTTGAAAGA+TGG + chr3_2:17706249-17706268 Msa0397750:CDS 40.0%
CCCATCTTTCAACCATTATC+GGG - chr3_2:17706253-17706272 None:intergenic 40.0%
! CCCGATAATGGTTGAAAGAT+GGG + chr3_2:17706250-17706269 Msa0397750:CDS 40.0%
!! TCTCTAGCCTTGGAAAGAAA+TGG + chr3_2:17706465-17706484 Msa0397750:CDS 40.0%
! TAGCCTTGGAAAGAAATGGA+AGG + chr3_2:17706469-17706488 Msa0397750:CDS 40.0%
CATCCTTCCATTTCTTTCCA+AGG - chr3_2:17706475-17706494 None:intergenic 40.0%
CTTGGAAAGAAATGGAAGGA+TGG + chr3_2:17706473-17706492 Msa0397750:CDS 40.0%
CAAATGGGAACTCACATTAG+AGG + chr3_2:17706523-17706542 Msa0397750:CDS 40.0%
TGATCTGGGTGACTAAAACT+TGG - chr3_2:17706569-17706588 None:intergenic 40.0%
!! GTTTTAGTCACCCAGATCAT+TGG + chr3_2:17706570-17706589 Msa0397750:CDS 40.0%
CAAAAACAGCCCAATGATCT+GGG - chr3_2:17706583-17706602 None:intergenic 40.0%
ACAAAAACAGCCCAATGATC+TGG - chr3_2:17706584-17706603 None:intergenic 40.0%
TGCGATCAGAAAAGATGAGT+TGG + chr3_2:17706776-17706795 Msa0397750:CDS 40.0%
GATATGGTCGAGAATATAGC+AGG + chr3_2:17706932-17706951 Msa0397750:CDS 40.0%
TATGGTCGAGAATATAGCAG+GGG + chr3_2:17706934-17706953 Msa0397750:CDS 40.0%
! GAAGCATTTGCCAATGTGTT+TGG + chr3_2:17707292-17707311 Msa0397750:CDS 40.0%
!! CATTTTCTCATTAGCCTCGA+TGG - chr3_2:17707407-17707426 None:intergenic 40.0%
! AGCCGAGATTGATTCTCTTA+AGG + chr3_2:17707438-17707457 Msa0397750:CDS 40.0%
ACATCAACCTCCCAGTATCT+TGG - chr3_2:17705953-17705972 None:intergenic 45.0%
ATGCGGTGGGTCATATTTCA+AGG + chr3_2:17706078-17706097 Msa0397750:CDS 45.0%
GAACCAGGATAATGACTCGA+TGG + chr3_2:17706144-17706163 Msa0397750:CDS 45.0%
AATGATGTTCCTCAACCGGT+GGG + chr3_2:17706167-17706186 Msa0397750:CDS 45.0%
AATTTAGCAGATTGCCCCAC+CGG - chr3_2:17706185-17706204 None:intergenic 45.0%
GAGTCAGTTCCTAGTGTATG+AGG - chr3_2:17706753-17706772 None:intergenic 45.0%
TCTGTGTACGCAATCTCATC+TGG + chr3_2:17706842-17706861 Msa0397750:intron 45.0%
GTGTTTGGAAAGGAACATGC+TGG + chr3_2:17707307-17707326 Msa0397750:CDS 45.0%
TGCTGGATATGTCCGTTCTA+TGG + chr3_2:17707324-17707343 Msa0397750:CDS 45.0%
GCTGGATATGTCCGTTCTAT+GGG + chr3_2:17707325-17707344 Msa0397750:CDS 45.0%
CTGGATATGTCCGTTCTATG+GGG + chr3_2:17707326-17707345 Msa0397750:CDS 45.0%
TTATGCCAAGCCCCATAGAA+CGG - chr3_2:17707339-17707358 None:intergenic 45.0%
ACATCAACCTCCCAGTATCT+TGG - chr3_2:17705953-17705972 None:intergenic 45.0%
ATGCGGTGGGTCATATTTCA+AGG + chr3_2:17706078-17706097 Msa0397750:CDS 45.0%
GAACCAGGATAATGACTCGA+TGG + chr3_2:17706144-17706163 Msa0397750:CDS 45.0%
AATGATGTTCCTCAACCGGT+GGG + chr3_2:17706167-17706186 Msa0397750:CDS 45.0%
AATTTAGCAGATTGCCCCAC+CGG - chr3_2:17706185-17706204 None:intergenic 45.0%
GAGTCAGTTCCTAGTGTATG+AGG - chr3_2:17706753-17706772 None:intergenic 45.0%
TCTGTGTACGCAATCTCATC+TGG + chr3_2:17706842-17706861 Msa0397750:intron 45.0%
GTGTTTGGAAAGGAACATGC+TGG + chr3_2:17707307-17707326 Msa0397750:CDS 45.0%
TGCTGGATATGTCCGTTCTA+TGG + chr3_2:17707324-17707343 Msa0397750:CDS 45.0%
GCTGGATATGTCCGTTCTAT+GGG + chr3_2:17707325-17707344 Msa0397750:CDS 45.0%
CTGGATATGTCCGTTCTATG+GGG + chr3_2:17707326-17707345 Msa0397750:CDS 45.0%
TTATGCCAAGCCCCATAGAA+CGG - chr3_2:17707339-17707358 None:intergenic 45.0%
GAATGATGTTCCTCAACCGG+TGG + chr3_2:17706166-17706185 Msa0397750:CDS 50.0%
ATGATGTTCCTCAACCGGTG+GGG + chr3_2:17706168-17706187 Msa0397750:CDS 50.0%
TAGGAGGAAGGCTGAACAAG+TGG + chr3_2:17706610-17706629 Msa0397750:CDS 50.0%
TATGTCCGTTCTATGGGGCT+TGG + chr3_2:17707331-17707350 Msa0397750:CDS 50.0%
GAGCGACTAGAGATTCGAGA+TGG - chr3_2:17707364-17707383 None:intergenic 50.0%
! ATTAGCCTCGTCTTCCATCG+AGG + chr3_2:17707390-17707409 Msa0397750:CDS 50.0%
! ATTAGCCTCGATGGAAGACG+AGG - chr3_2:17707398-17707417 None:intergenic 50.0%
GAATGATGTTCCTCAACCGG+TGG + chr3_2:17706166-17706185 Msa0397750:CDS 50.0%
ATGATGTTCCTCAACCGGTG+GGG + chr3_2:17706168-17706187 Msa0397750:CDS 50.0%
TAGGAGGAAGGCTGAACAAG+TGG + chr3_2:17706610-17706629 Msa0397750:CDS 50.0%
TATGTCCGTTCTATGGGGCT+TGG + chr3_2:17707331-17707350 Msa0397750:CDS 50.0%
GAGCGACTAGAGATTCGAGA+TGG - chr3_2:17707364-17707383 None:intergenic 50.0%
! ATTAGCCTCGTCTTCCATCG+AGG + chr3_2:17707390-17707409 Msa0397750:CDS 50.0%
! ATTAGCCTCGATGGAAGACG+AGG - chr3_2:17707398-17707417 None:intergenic 50.0%
! GCAGATTGCCCCACCGGTTG+AGG - chr3_2:17706179-17706198 None:intergenic 65.0%
! GCAGATTGCCCCACCGGTTG+AGG - chr3_2:17706179-17706198 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 17705908 17707561 17705908 ID=Msa0397750;Name=Msa0397750
chr3_2 mRNA 17705908 17707561 17705908 ID=Msa0397750-mRNA-1;Parent=Msa0397750;Name=Msa0397750-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.83|1|1|0.83|6|36|333
chr3_2 exon 17705908 17705977 17705908 ID=Msa0397750-mRNA-1:exon:3966;Parent=Msa0397750-mRNA-1
chr3_2 exon 17706078 17706325 17706078 ID=Msa0397750-mRNA-1:exon:3967;Parent=Msa0397750-mRNA-1
chr3_2 exon 17706419 17706631 17706419 ID=Msa0397750-mRNA-1:exon:3968;Parent=Msa0397750-mRNA-1
chr3_2 exon 17706705 17706797 17706705 ID=Msa0397750-mRNA-1:exon:3969;Parent=Msa0397750-mRNA-1
chr3_2 exon 17706925 17707026 17706925 ID=Msa0397750-mRNA-1:exon:3970;Parent=Msa0397750-mRNA-1
chr3_2 exon 17707250 17707561 17707250 ID=Msa0397750-mRNA-1:exon:3971;Parent=Msa0397750-mRNA-1
chr3_2 CDS 17705908 17705977 17705908 ID=Msa0397750-mRNA-1:cds;Parent=Msa0397750-mRNA-1
chr3_2 CDS 17706078 17706325 17706078 ID=Msa0397750-mRNA-1:cds;Parent=Msa0397750-mRNA-1
chr3_2 CDS 17706419 17706631 17706419 ID=Msa0397750-mRNA-1:cds;Parent=Msa0397750-mRNA-1
chr3_2 CDS 17706705 17706797 17706705 ID=Msa0397750-mRNA-1:cds;Parent=Msa0397750-mRNA-1
chr3_2 CDS 17706925 17707026 17706925 ID=Msa0397750-mRNA-1:cds;Parent=Msa0397750-mRNA-1
chr3_2 CDS 17707250 17707525 17707250 ID=Msa0397750-mRNA-1:cds;Parent=Msa0397750-mRNA-1
chr3_2 three_prime_UTR 17707526 17707561 17707526 ID=Msa0397750-mRNA-1:three_prime_utr;Parent=Msa0397750-mRNA-1
Gene Sequence

>Msa0397750

GAAGATGTAGATGAAGAGCTGAACATTACTGATAAAAAGAAACCAAGATACTGGGAGGTTGATGTTATAAATGCGGTGGGTCATATTTCAAGGAGACGTTTAACAGTGGCAGATGTGCTTGAAGAATCTCCAAATGGAACCAGGATAATGACTCGATGGAATGATGTTCCTCAACCGGTGGGGCAATCTGCTAAATTGTTAGCAAATTATTTGGGCCAATTGGCAAGGCAATTTAAAGATTTCCCGATAATGGTTGAAAGATGGGATGCTGCAATTTTAAAGGAAAAGAAAACTAAGTTTTATGATAGCAAAGTAAAGTCAAAGTTTGTTGTTGATGATGATGGAGACCATAAAAAATATGTTATCTCTAGCCTTGGAAAGAAATGGAAGGATGGAAAGTCTCGATTGTTTAAGAAACATTACAAATGGGAACTCACATTAGAGGAGAATCTCAAAAAAAATCGTCCAAGTTTTAGTCACCCAGATCATTGGGCTGTTTTTGTCAATTTTAGGAGGAAGGCTGAACAAGTGGCGATTGCACAAAAAAATGCAAGAAATAGGAAAATGCAAAAAACTCCTCATACACTAGGAACTGACTCGCTTGCGATCAGAAAAGATGAGTTGGAATTGAGATATGGTCGAGAATATAGCAGGGGAGATATGTATGATGTTTCGTATAAAGATGCCAAGGGAAAATTTGTCAATGAATATGCAAGGGAAAAAGCTGAACTATTGCAAGTTGAAATGCAAAACACTCAATGTGAGAATGAAGCATTTGCCAATGTGTTTGGAAAGGAACATGCTGGATATGTCCGTTCTATGGGGCTTGGCATAACACCATCTCGAATCTCTAGTCGCTCTACTAGATTAGCCTCGTCTTCCATCGAGGCTAATGAGAAAATGTTGAAAATGCAAGCCGAGATTGATTCTCTTAAGGAGAAGGCTTCAGAAGTTGATGTCTTGAAGGCGCAAGTTGCCTTATTAATGCAAATGCAAGCGTAA

Protein sequence

>Msa0397750

EDVDEELNITDKKKPRYWEVDVINAVGHISRRRLTVADVLEESPNGTRIMTRWNDVPQPVGQSAKLLANYLGQLARQFKDFPIMVERWDAAILKEKKTKFYDSKVKSKFVVDDDGDHKKYVISSLGKKWKDGKSRLFKKHYKWELTLEENLKKNRPSFSHPDHWAVFVNFRRKAEQVAIAQKNARNRKMQKTPHTLGTDSLAIRKDELELRYGREYSRGDMYDVSYKDAKGKFVNEYAREKAELLQVEMQNTQCENEAFANVFGKEHAGYVRSMGLGITPSRISSRSTRLASSSIEANEKMLKMQAEIDSLKEKASEVDVLKAQVALLMQMQA*