AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959740 MtrunA17_Chr6g0486531 74.882 211 43 3 2 212 48 248 1.09e-89 284
Msa0959740 MtrunA17_Chr6g0486351 52.174 161 37 4 1 161 46 166 1.06e-35 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959740 AT4G29060.2 57.971 138 57 1 73 209 100 237 2.38e-44 157
Msa0959740 AT4G29060.1 57.971 138 57 1 73 209 100 237 3.61e-44 157

Find 118 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTTTCTTTGGCTGATA+TGG 0.165426 6_3:-77152767 None:intergenic
TTTGGTGCGTTTGTTGATTT+TGG 0.187251 6_3:+77153018 Msa0959740:CDS
CACGGATACTTCTGTTTCTT+TGG 0.210977 6_3:-77152776 None:intergenic
TCATCTGCAACAGGTGAATT+TGG 0.213637 6_3:-77152805 None:intergenic
CCATAATAAAACACAGTTAA+AGG 0.272940 6_3:+77154591 Msa0959740:three_prime_UTR
GGTTCAACTGTCTCTGTTAC+AGG 0.286386 6_3:-77153814 None:intergenic
ACCAAATCCTCATTCTTTAC+AGG 0.301884 6_3:-77152952 None:intergenic
CAACAATCATAAACTGATAA+TGG 0.310238 6_3:+77153775 Msa0959740:three_prime_UTR
CTTGAGGATTCTGTGATAAC+AGG 0.310350 6_3:-77153841 None:intergenic
TCTTCAGTTGTAGGACTATC+AGG 0.311030 6_3:-77154564 None:intergenic
CGATGGATTCGGGAATATAA+TGG 0.316965 6_3:+77153399 Msa0959740:three_prime_UTR
AGGAAGATGGCGATGGATTC+GGG 0.325331 6_3:+77153389 Msa0959740:three_prime_UTR
GAGGAAGATGGCGATGGATT+CGG 0.330444 6_3:+77153388 Msa0959740:three_prime_UTR
CACAAAATTTGTTGTAGGTT+AGG 0.337629 6_3:+77153295 Msa0959740:exon
CCGGATTTCTCTGTATTGTT+TGG 0.339087 6_3:-77153222 None:intergenic
TCCTGTAAAGAATGAGGATT+TGG 0.339661 6_3:+77152951 Msa0959740:CDS
GGAAAATCTTTGTTGGAGAT+TGG 0.350910 6_3:+77153421 Msa0959740:three_prime_UTR
AAGAATGAGGATTTGGTTCC+CGG 0.354645 6_3:+77152958 Msa0959740:CDS
GAAATCACAAAATTTGTTGT+AGG 0.358719 6_3:+77153290 Msa0959740:CDS
TGTTGTAGGTTAGGAGTTGC+AGG 0.366317 6_3:+77153304 Msa0959740:exon
GACCAAGGAAGTGTTATAAA+TGG 0.367748 6_3:+77153562 Msa0959740:three_prime_UTR
TGTGATTTCCTATCTTTCCT+TGG 0.374590 6_3:-77153276 None:intergenic
TATGGCGCTTCTTCAGTTGT+AGG 0.375247 6_3:-77154573 None:intergenic
TTCGAAGAATCCCTCCTCTC+AGG 0.405650 6_3:-77153246 None:intergenic
TCTGAAAGTTTAGCTGTTGA+AGG 0.410361 6_3:+77153613 Msa0959740:three_prime_UTR
CTTGTTCGAACTTCAGCTAA+AGG 0.414251 6_3:-77152844 None:intergenic
AGGAGGGATTCTTCGAAATC+TGG 0.415946 6_3:+77153252 Msa0959740:CDS
TATAATGGGAAAATCTTTGT+TGG 0.419087 6_3:+77153414 Msa0959740:three_prime_UTR
CACCATTTATAACACTTCCT+TGG 0.437574 6_3:-77153564 None:intergenic
TTAGAAACTTCATCTGCAAC+AGG 0.445058 6_3:-77152814 None:intergenic
GTAAAATCTATCCAACGGTT+TGG 0.461463 6_3:+77153000 Msa0959740:CDS
AATCTGGTCCAAGGAAAGAT+AGG 0.464733 6_3:+77153268 Msa0959740:CDS
TAAACTTTCAGAAGCCGCTT+CGG 0.465962 6_3:-77153602 None:intergenic
GATGGATTCGGGAATATAAT+GGG 0.470226 6_3:+77153400 Msa0959740:three_prime_UTR
CCTGAGGGAAGCTTGAATAA+AGG 0.470228 6_3:+77154105 Msa0959740:three_prime_UTR
TAGAAATCCTTCCTCCCCTT+CGG 0.483516 6_3:-77153356 None:intergenic
GAGATTGATGCTAGTTTGAC+TGG 0.484458 6_3:+77154063 Msa0959740:three_prime_UTR
GATGAAAGTGTAACAGAAAG+TGG 0.485200 6_3:+77153724 Msa0959740:three_prime_UTR
CAAGAACCTTCTCCTTCTTG+AGG 0.485334 6_3:-77153857 None:intergenic
TCGCCATCTTCCTCAGCTTA+CGG 0.490050 6_3:-77153379 None:intergenic
AGCATTACTGCTTCAGATGA+AGG 0.490902 6_3:+77154646 Msa0959740:three_prime_UTR
GCATCAATCTCATTGTTCTC+AGG 0.492520 6_3:-77154051 None:intergenic
GGCTTTCGTAAAACCAGCGT+TGG 0.494577 6_3:-77152893 None:intergenic
CCTTTATTCAAGCTTCCCTC+AGG 0.497257 6_3:-77154105 None:intergenic
TTTCCCAGTAAAAGCTGCCC+CGG 0.500991 6_3:-77152977 None:intergenic
CGTAAAACCAGCGTTGGGAT+CGG 0.504127 6_3:-77152887 None:intergenic
TGTTTCTTTGGCTGATATGG+AGG 0.514335 6_3:-77152764 None:intergenic
GAGTGGTCCGAAGGGGAGGA+AGG 0.515972 6_3:+77153349 Msa0959740:three_prime_UTR
TCAGATGAAGGCCTGAGAAA+AGG 0.516893 6_3:+77154658 Msa0959740:three_prime_UTR
CAATGTCGAAACTGACTCAC+TGG 0.520377 6_3:+77153690 Msa0959740:three_prime_UTR
GCTTTCGTAAAACCAGCGTT+GGG 0.522883 6_3:-77152892 None:intergenic
CTGAAAGTTTAGCTGTTGAA+GGG 0.529172 6_3:+77153614 Msa0959740:three_prime_UTR
CCAAACAATACAGAGAAATC+CGG 0.531094 6_3:+77153222 Msa0959740:CDS
AGAATCCCTCCTCTCAGGGC+CGG 0.535622 6_3:-77153241 None:intergenic
CTACCGTAAGCTGAGGAAGA+TGG 0.537175 6_3:+77153376 Msa0959740:three_prime_UTR
TCGAAGAATCCCTCCTCTCA+GGG 0.539017 6_3:-77153245 None:intergenic
TATACATACACACTTATATG+AGG 0.539528 6_3:+77153640 Msa0959740:three_prime_UTR
ATCATCCGCAACAGTTGTTG+AGG 0.540849 6_3:-77153533 None:intergenic
TTGTTCATCAGAATTAGTAA+AGG 0.542251 6_3:-77154620 None:intergenic
GTTGAGTGATAGCTATGTAA+AGG 0.545322 6_3:+77153074 Msa0959740:CDS
AGGTTAGGAGTTGCAGGGTA+CGG 0.545914 6_3:+77153310 Msa0959740:exon
GTGATGAGGAGTGGTCCGAA+GGG 0.548531 6_3:+77153341 Msa0959740:three_prime_UTR
GTTGCAAGTGTGGTGGCTGT+TGG 0.549928 6_3:+77153099 Msa0959740:CDS
GAAGGAAGGAGCTAGTTCAT+TGG 0.552591 6_3:+77153504 Msa0959740:three_prime_UTR
AGCGACGTTGATTACGAAGA+AGG 0.555840 6_3:+77153486 Msa0959740:three_prime_UTR
CGAGATTTGCGTATCACAAG+AGG 0.557273 6_3:+77153460 Msa0959740:three_prime_UTR
CTTAAGTCCGATCCCAACGC+TGG 0.558449 6_3:+77152880 Msa0959740:CDS
TTTCAAGTAGATGACGATGT+TGG 0.558946 6_3:+77154021 Msa0959740:intron
GAAATCCGGCCCTGAGAGGA+GGG 0.559070 6_3:+77153236 Msa0959740:CDS
AGAAATCCGGCCCTGAGAGG+AGG 0.560282 6_3:+77153235 Msa0959740:CDS
CAACAAACGCACCAAACCGT+TGG 0.560336 6_3:-77153011 None:intergenic
CACAAACAGCGGAAACAGCA+TGG 0.561171 6_3:-77152656 None:intergenic
GATTCTGTGATAACAGGGCC+AGG 0.563179 6_3:-77153835 None:intergenic
TGTGATGAGGAGTGGTCCGA+AGG 0.566790 6_3:+77153340 Msa0959740:three_prime_UTR
TAAAACACAGTTAAAGGTGA+AGG 0.567812 6_3:+77154597 Msa0959740:three_prime_UTR
AGAATGAGGATTTGGTTCCC+GGG 0.569157 6_3:+77152959 Msa0959740:CDS
AACTGACTCACTGGTTGAAG+TGG 0.569436 6_3:+77153699 Msa0959740:three_prime_UTR
CGGTTCCTCAACAACTGTTG+CGG 0.573354 6_3:+77153528 Msa0959740:three_prime_UTR
TATAAATGGTGCCACTGAGA+AGG 0.575300 6_3:+77153576 Msa0959740:three_prime_UTR
ATCATAAACTGATAATGGAA+AGG 0.582675 6_3:+77153780 Msa0959740:three_prime_UTR
GGCTGTTGGACAAGAAGTTA+CGG 0.583153 6_3:+77153113 Msa0959740:CDS
TGAGGAGTGGTCCGAAGGGG+AGG 0.583749 6_3:+77153345 Msa0959740:three_prime_UTR
CGCTTCGGTTTCCTTCTCAG+TGG 0.591068 6_3:-77153587 None:intergenic
CAGAATCCTCAAGAAGGAGA+AGG 0.593813 6_3:+77153851 Msa0959740:three_prime_UTR
GTAACAGAGACAGTTGAACC+TGG 0.593855 6_3:+77153817 Msa0959740:three_prime_UTR
GAATGAGGATTTGGTTCCCG+GGG 0.599120 6_3:+77152960 Msa0959740:CDS
AAATCCTCATTCTTTACAGG+AGG 0.604341 6_3:-77152949 None:intergenic
AAGTGATGATTTGTCTCCTG+AGG 0.605174 6_3:+77154089 Msa0959740:three_prime_UTR
TGTAAAGGACGTTGCAAGTG+TGG 0.605803 6_3:+77153089 Msa0959740:CDS
ATTCTTCGAAATCTGGTCCA+AGG 0.607021 6_3:+77153259 Msa0959740:CDS
TTGAGGATTCTGTGATAACA+GGG 0.608025 6_3:-77153840 None:intergenic
GAAGGAGCTAGTTCATTGGT+CGG 0.610923 6_3:+77153508 Msa0959740:three_prime_UTR
GATGCCTCCTGTAAAGAATG+AGG 0.611247 6_3:+77152945 Msa0959740:CDS
GTTGTAGGTTAGGAGTTGCA+GGG 0.614399 6_3:+77153305 Msa0959740:exon
ACGTTGATTACGAAGAAGGA+AGG 0.614789 6_3:+77153490 Msa0959740:three_prime_UTR
TTCCCAGTAAAAGCTGCCCC+GGG 0.615600 6_3:-77152976 None:intergenic
TGAAAGTTTAGCTGTTGAAG+GGG 0.616343 6_3:+77153615 Msa0959740:three_prime_UTR
TTCTGTGGATGACATGAATG+CGG 0.622074 6_3:-77152729 None:intergenic
CAGAGAAATCCGGCCCTGAG+AGG 0.622169 6_3:+77153232 Msa0959740:CDS
GGAAAGTAAAATCTATCCAA+CGG 0.624178 6_3:+77152995 Msa0959740:CDS
TTATCACAGAATCCTCAAGA+AGG 0.626502 6_3:+77153845 Msa0959740:three_prime_UTR
TAAGCTGAGGAAGATGGCGA+TGG 0.627679 6_3:+77153382 Msa0959740:three_prime_UTR
AGTGATGATTTGTCTCCTGA+GGG 0.629295 6_3:+77154090 Msa0959740:three_prime_UTR
GCGGATGATGAAAGCGACCA+AGG 0.634703 6_3:+77153547 Msa0959740:three_prime_UTR
GTTGTAGGACTATCAGGAGA+GGG 0.635970 6_3:-77154558 None:intergenic
AGGATTTCTACCGTAAGCTG+AGG 0.660330 6_3:+77153369 Msa0959740:three_prime_UTR
AGGTGAATTTGGTACCTCCA+CGG 0.661265 6_3:-77152794 None:intergenic
TGGACAAGAAGTTACGGTGA+AGG 0.662070 6_3:+77153119 Msa0959740:CDS
AGTTGTAGGACTATCAGGAG+AGG 0.662090 6_3:-77154559 None:intergenic
CACTGAGAAGGAAACCGAAG+CGG 0.663126 6_3:+77153588 Msa0959740:three_prime_UTR
CAAAGAAACAGAAGTATCCG+TGG 0.681393 6_3:+77152777 Msa0959740:CDS
TGATGAGGAGTGGTCCGAAG+GGG 0.681529 6_3:+77153342 Msa0959740:three_prime_UTR
GTACGGTGAAGAATGTGATG+AGG 0.681697 6_3:+77153327 Msa0959740:three_prime_UTR
GTGAAGAATGTGATGAGGAG+TGG 0.696151 6_3:+77153332 Msa0959740:three_prime_UTR
AAAGGACGTTGCAAGTGTGG+TGG 0.708689 6_3:+77153092 Msa0959740:CDS
TGAAACACAGACACAAACAG+CGG 0.732233 6_3:-77152667 None:intergenic
CCAGACGTTCAAAACCTGCG+AGG 0.752155 6_3:+77152914 Msa0959740:CDS
AGAAACAGAAGTATCCGTGG+AGG 0.756395 6_3:+77152780 Msa0959740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATACAACAACATTTTA+AGG + chr6_3:77152687-77152706 Msa0959740:CDS 20.0%
!! AATGGAAAGGAAATATTATT+TGG - chr6_3:77154003-77154022 None:intergenic 20.0%
!!! TCATATACAACAACATTTTA+AGG + chr6_3:77152687-77152706 Msa0959740:CDS 20.0%
!! AATGGAAAGGAAATATTATT+TGG - chr6_3:77154003-77154022 None:intergenic 20.0%
!!! GAAATCACAAAATTTGTTGT+AGG + chr6_3:77153290-77153309 Msa0959740:CDS 25.0%
!! TATAATGGGAAAATCTTTGT+TGG + chr6_3:77153414-77153433 Msa0959740:three_prime_UTR 25.0%
! TATACATACACACTTATATG+AGG + chr6_3:77153640-77153659 Msa0959740:three_prime_UTR 25.0%
! CAACAATCATAAACTGATAA+TGG + chr6_3:77153775-77153794 Msa0959740:three_prime_UTR 25.0%
!!! ATCATAAACTGATAATGGAA+AGG + chr6_3:77153780-77153799 Msa0959740:three_prime_UTR 25.0%
!! AACAACACTAGATTGAATTT+TGG + chr6_3:77154314-77154333 Msa0959740:intron 25.0%
! TACATAAAGATCAAATAGAC+AGG - chr6_3:77154377-77154396 None:intergenic 25.0%
!! TTGCATAAAGTTGATTGATT+GGG - chr6_3:77154448-77154467 None:intergenic 25.0%
!! TTTGCATAAAGTTGATTGAT+TGG - chr6_3:77154449-77154468 None:intergenic 25.0%
!!! CCTTTAACTGTGTTTTATTA+TGG - chr6_3:77154594-77154613 None:intergenic 25.0%
! CCATAATAAAACACAGTTAA+AGG + chr6_3:77154591-77154610 Msa0959740:three_prime_UTR 25.0%
! TTGTTCATCAGAATTAGTAA+AGG - chr6_3:77154623-77154642 None:intergenic 25.0%
!!! GAAATCACAAAATTTGTTGT+AGG + chr6_3:77153290-77153309 Msa0959740:CDS 25.0%
!! TATAATGGGAAAATCTTTGT+TGG + chr6_3:77153414-77153433 Msa0959740:three_prime_UTR 25.0%
! TATACATACACACTTATATG+AGG + chr6_3:77153640-77153659 Msa0959740:three_prime_UTR 25.0%
! CAACAATCATAAACTGATAA+TGG + chr6_3:77153775-77153794 Msa0959740:three_prime_UTR 25.0%
!!! ATCATAAACTGATAATGGAA+AGG + chr6_3:77153780-77153799 Msa0959740:three_prime_UTR 25.0%
!! AACAACACTAGATTGAATTT+TGG + chr6_3:77154314-77154333 Msa0959740:intron 25.0%
! TACATAAAGATCAAATAGAC+AGG - chr6_3:77154377-77154396 None:intergenic 25.0%
!! TTGCATAAAGTTGATTGATT+GGG - chr6_3:77154448-77154467 None:intergenic 25.0%
!! TTTGCATAAAGTTGATTGAT+TGG - chr6_3:77154449-77154468 None:intergenic 25.0%
!!! CCTTTAACTGTGTTTTATTA+TGG - chr6_3:77154594-77154613 None:intergenic 25.0%
! CCATAATAAAACACAGTTAA+AGG + chr6_3:77154591-77154610 Msa0959740:three_prime_UTR 25.0%
! TTGTTCATCAGAATTAGTAA+AGG - chr6_3:77154623-77154642 None:intergenic 25.0%
GGAAAGTAAAATCTATCCAA+CGG + chr6_3:77152995-77153014 Msa0959740:CDS 30.0%
!! CACAAAATTTGTTGTAGGTT+AGG + chr6_3:77153295-77153314 Msa0959740:exon 30.0%
CCATATGTAAAATACGAATG+CGG - chr6_3:77153912-77153931 None:intergenic 30.0%
! AATCTAGTGTTGTTACATAG+TGG - chr6_3:77154308-77154327 None:intergenic 30.0%
GTACAATATCATGCATTATG+TGG - chr6_3:77154404-77154423 None:intergenic 30.0%
TAAAACACAGTTAAAGGTGA+AGG + chr6_3:77154597-77154616 Msa0959740:three_prime_UTR 30.0%
GGAAAGTAAAATCTATCCAA+CGG + chr6_3:77152995-77153014 Msa0959740:CDS 30.0%
!! CACAAAATTTGTTGTAGGTT+AGG + chr6_3:77153295-77153314 Msa0959740:exon 30.0%
CCATATGTAAAATACGAATG+CGG - chr6_3:77153912-77153931 None:intergenic 30.0%
! AATCTAGTGTTGTTACATAG+TGG - chr6_3:77154308-77154327 None:intergenic 30.0%
GTACAATATCATGCATTATG+TGG - chr6_3:77154404-77154423 None:intergenic 30.0%
TAAAACACAGTTAAAGGTGA+AGG + chr6_3:77154597-77154616 Msa0959740:three_prime_UTR 30.0%
!!! AGGTTCGAGATTTTTTTCTG+TGG - chr6_3:77152747-77152766 None:intergenic 35.0%
! TTCTGTTTCTTTGGCTGATA+TGG - chr6_3:77152770-77152789 None:intergenic 35.0%
TTAGAAACTTCATCTGCAAC+AGG - chr6_3:77152817-77152836 None:intergenic 35.0%
AAATCCTCATTCTTTACAGG+AGG - chr6_3:77152952-77152971 None:intergenic 35.0%
TCCTGTAAAGAATGAGGATT+TGG + chr6_3:77152951-77152970 Msa0959740:CDS 35.0%
ACCAAATCCTCATTCTTTAC+AGG - chr6_3:77152955-77152974 None:intergenic 35.0%
GTAAAATCTATCCAACGGTT+TGG + chr6_3:77153000-77153019 Msa0959740:CDS 35.0%
!!! TTTGGTGCGTTTGTTGATTT+TGG + chr6_3:77153018-77153037 Msa0959740:CDS 35.0%
!!! TGTTGATTTTGGAGCTTTCA+CGG + chr6_3:77153029-77153048 Msa0959740:CDS 35.0%
GTTGAGTGATAGCTATGTAA+AGG + chr6_3:77153074-77153093 Msa0959740:CDS 35.0%
CCAAACAATACAGAGAAATC+CGG + chr6_3:77153222-77153241 Msa0959740:CDS 35.0%
TGTGATTTCCTATCTTTCCT+TGG - chr6_3:77153279-77153298 None:intergenic 35.0%
! GATGGATTCGGGAATATAAT+GGG + chr6_3:77153400-77153419 Msa0959740:three_prime_UTR 35.0%
GGAAAATCTTTGTTGGAGAT+TGG + chr6_3:77153421-77153440 Msa0959740:three_prime_UTR 35.0%
!! GACCAAGGAAGTGTTATAAA+TGG + chr6_3:77153562-77153581 Msa0959740:three_prime_UTR 35.0%
CACCATTTATAACACTTCCT+TGG - chr6_3:77153567-77153586 None:intergenic 35.0%
TCTGAAAGTTTAGCTGTTGA+AGG + chr6_3:77153613-77153632 Msa0959740:three_prime_UTR 35.0%
CTGAAAGTTTAGCTGTTGAA+GGG + chr6_3:77153614-77153633 Msa0959740:three_prime_UTR 35.0%
TGAAAGTTTAGCTGTTGAAG+GGG + chr6_3:77153615-77153634 Msa0959740:three_prime_UTR 35.0%
! GATGAAAGTGTAACAGAAAG+TGG + chr6_3:77153724-77153743 Msa0959740:three_prime_UTR 35.0%
TTGAGGATTCTGTGATAACA+GGG - chr6_3:77153843-77153862 None:intergenic 35.0%
TTATCACAGAATCCTCAAGA+AGG + chr6_3:77153845-77153864 Msa0959740:three_prime_UTR 35.0%
! CCGCATTCGTATTTTACATA+TGG + chr6_3:77153909-77153928 Msa0959740:intron 35.0%
GTCATCTACTTGAAATGGAA+AGG - chr6_3:77154016-77154035 None:intergenic 35.0%
ACATCGTCATCTACTTGAAA+TGG - chr6_3:77154021-77154040 None:intergenic 35.0%
! TTTCAAGTAGATGACGATGT+TGG + chr6_3:77154021-77154040 Msa0959740:intron 35.0%
!!! ACTGCTATTTTCTGCGATAT+GGG - chr6_3:77154184-77154203 None:intergenic 35.0%
!!! AACTGCTATTTTCTGCGATA+TGG - chr6_3:77154185-77154204 None:intergenic 35.0%
TTCATATAGCAGCTATAGTG+GGG - chr6_3:77154240-77154259 None:intergenic 35.0%
GTTCATATAGCAGCTATAGT+GGG - chr6_3:77154241-77154260 None:intergenic 35.0%
TGTTCATATAGCAGCTATAG+TGG - chr6_3:77154242-77154261 None:intergenic 35.0%
GGGATCATATATGCAATGAA+AGG - chr6_3:77154428-77154447 None:intergenic 35.0%
CTTTATGCAAACCAAAGCAA+TGG + chr6_3:77154458-77154477 Msa0959740:intron 35.0%
ATGATGTCATTCCATTGCTT+TGG - chr6_3:77154472-77154491 None:intergenic 35.0%
!!! AGGTTCGAGATTTTTTTCTG+TGG - chr6_3:77152747-77152766 None:intergenic 35.0%
! TTCTGTTTCTTTGGCTGATA+TGG - chr6_3:77152770-77152789 None:intergenic 35.0%
TTAGAAACTTCATCTGCAAC+AGG - chr6_3:77152817-77152836 None:intergenic 35.0%
AAATCCTCATTCTTTACAGG+AGG - chr6_3:77152952-77152971 None:intergenic 35.0%
TCCTGTAAAGAATGAGGATT+TGG + chr6_3:77152951-77152970 Msa0959740:CDS 35.0%
ACCAAATCCTCATTCTTTAC+AGG - chr6_3:77152955-77152974 None:intergenic 35.0%
GTAAAATCTATCCAACGGTT+TGG + chr6_3:77153000-77153019 Msa0959740:CDS 35.0%
!!! TTTGGTGCGTTTGTTGATTT+TGG + chr6_3:77153018-77153037 Msa0959740:CDS 35.0%
!!! TGTTGATTTTGGAGCTTTCA+CGG + chr6_3:77153029-77153048 Msa0959740:CDS 35.0%
GTTGAGTGATAGCTATGTAA+AGG + chr6_3:77153074-77153093 Msa0959740:CDS 35.0%
CCAAACAATACAGAGAAATC+CGG + chr6_3:77153222-77153241 Msa0959740:CDS 35.0%
TGTGATTTCCTATCTTTCCT+TGG - chr6_3:77153279-77153298 None:intergenic 35.0%
! GATGGATTCGGGAATATAAT+GGG + chr6_3:77153400-77153419 Msa0959740:three_prime_UTR 35.0%
GGAAAATCTTTGTTGGAGAT+TGG + chr6_3:77153421-77153440 Msa0959740:three_prime_UTR 35.0%
!! GACCAAGGAAGTGTTATAAA+TGG + chr6_3:77153562-77153581 Msa0959740:three_prime_UTR 35.0%
CACCATTTATAACACTTCCT+TGG - chr6_3:77153567-77153586 None:intergenic 35.0%
TCTGAAAGTTTAGCTGTTGA+AGG + chr6_3:77153613-77153632 Msa0959740:three_prime_UTR 35.0%
CTGAAAGTTTAGCTGTTGAA+GGG + chr6_3:77153614-77153633 Msa0959740:three_prime_UTR 35.0%
TGAAAGTTTAGCTGTTGAAG+GGG + chr6_3:77153615-77153634 Msa0959740:three_prime_UTR 35.0%
! GATGAAAGTGTAACAGAAAG+TGG + chr6_3:77153724-77153743 Msa0959740:three_prime_UTR 35.0%
TTGAGGATTCTGTGATAACA+GGG - chr6_3:77153843-77153862 None:intergenic 35.0%
TTATCACAGAATCCTCAAGA+AGG + chr6_3:77153845-77153864 Msa0959740:three_prime_UTR 35.0%
! CCGCATTCGTATTTTACATA+TGG + chr6_3:77153909-77153928 Msa0959740:intron 35.0%
GTCATCTACTTGAAATGGAA+AGG - chr6_3:77154016-77154035 None:intergenic 35.0%
ACATCGTCATCTACTTGAAA+TGG - chr6_3:77154021-77154040 None:intergenic 35.0%
! TTTCAAGTAGATGACGATGT+TGG + chr6_3:77154021-77154040 Msa0959740:intron 35.0%
!!! ACTGCTATTTTCTGCGATAT+GGG - chr6_3:77154184-77154203 None:intergenic 35.0%
!!! AACTGCTATTTTCTGCGATA+TGG - chr6_3:77154185-77154204 None:intergenic 35.0%
TTCATATAGCAGCTATAGTG+GGG - chr6_3:77154240-77154259 None:intergenic 35.0%
GTTCATATAGCAGCTATAGT+GGG - chr6_3:77154241-77154260 None:intergenic 35.0%
TGTTCATATAGCAGCTATAG+TGG - chr6_3:77154242-77154261 None:intergenic 35.0%
GGGATCATATATGCAATGAA+AGG - chr6_3:77154428-77154447 None:intergenic 35.0%
CTTTATGCAAACCAAAGCAA+TGG + chr6_3:77154458-77154477 Msa0959740:intron 35.0%
ATGATGTCATTCCATTGCTT+TGG - chr6_3:77154472-77154491 None:intergenic 35.0%
TGAAACACAGACACAAACAG+CGG - chr6_3:77152670-77152689 None:intergenic 40.0%
TTCTGTGGATGACATGAATG+CGG - chr6_3:77152732-77152751 None:intergenic 40.0%
TGTTTCTTTGGCTGATATGG+AGG - chr6_3:77152767-77152786 None:intergenic 40.0%
! CACGGATACTTCTGTTTCTT+TGG - chr6_3:77152779-77152798 None:intergenic 40.0%
!! CAAAGAAACAGAAGTATCCG+TGG + chr6_3:77152777-77152796 Msa0959740:CDS 40.0%
TCATCTGCAACAGGTGAATT+TGG - chr6_3:77152808-77152827 None:intergenic 40.0%
CTTGTTCGAACTTCAGCTAA+AGG - chr6_3:77152847-77152866 None:intergenic 40.0%
! AAGAATGAGGATTTGGTTCC+CGG + chr6_3:77152958-77152977 Msa0959740:CDS 40.0%
CCGGATTTCTCTGTATTGTT+TGG - chr6_3:77153225-77153244 None:intergenic 40.0%
ATTCTTCGAAATCTGGTCCA+AGG + chr6_3:77153259-77153278 Msa0959740:CDS 40.0%
AATCTGGTCCAAGGAAAGAT+AGG + chr6_3:77153268-77153287 Msa0959740:CDS 40.0%
! CGATGGATTCGGGAATATAA+TGG + chr6_3:77153399-77153418 Msa0959740:three_prime_UTR 40.0%
! ACGTTGATTACGAAGAAGGA+AGG + chr6_3:77153490-77153509 Msa0959740:three_prime_UTR 40.0%
!! TATAAATGGTGCCACTGAGA+AGG + chr6_3:77153576-77153595 Msa0959740:three_prime_UTR 40.0%
TAAACTTTCAGAAGCCGCTT+CGG - chr6_3:77153605-77153624 None:intergenic 40.0%
CTTGAGGATTCTGTGATAAC+AGG - chr6_3:77153844-77153863 None:intergenic 40.0%
GCATCAATCTCATTGTTCTC+AGG - chr6_3:77154054-77154073 None:intergenic 40.0%
! GAGATTGATGCTAGTTTGAC+TGG + chr6_3:77154063-77154082 Msa0959740:three_prime_UTR 40.0%
! AAGTGATGATTTGTCTCCTG+AGG + chr6_3:77154089-77154108 Msa0959740:three_prime_UTR 40.0%
! AGTGATGATTTGTCTCCTGA+GGG + chr6_3:77154090-77154109 Msa0959740:three_prime_UTR 40.0%
! GATTGACAACACTGATTGTC+AGG - chr6_3:77154162-77154181 None:intergenic 40.0%
GCTGTAATGCTATTGCATAG+CGG - chr6_3:77154218-77154237 None:intergenic 40.0%
GCTATAGTGCTATAGCATAG+TGG - chr6_3:77154284-77154303 None:intergenic 40.0%
TCTTCAGTTGTAGGACTATC+AGG - chr6_3:77154567-77154586 None:intergenic 40.0%
AGCATTACTGCTTCAGATGA+AGG + chr6_3:77154646-77154665 Msa0959740:three_prime_UTR 40.0%
TGAAACACAGACACAAACAG+CGG - chr6_3:77152670-77152689 None:intergenic 40.0%
TTCTGTGGATGACATGAATG+CGG - chr6_3:77152732-77152751 None:intergenic 40.0%
TGTTTCTTTGGCTGATATGG+AGG - chr6_3:77152767-77152786 None:intergenic 40.0%
! CACGGATACTTCTGTTTCTT+TGG - chr6_3:77152779-77152798 None:intergenic 40.0%
!! CAAAGAAACAGAAGTATCCG+TGG + chr6_3:77152777-77152796 Msa0959740:CDS 40.0%
TCATCTGCAACAGGTGAATT+TGG - chr6_3:77152808-77152827 None:intergenic 40.0%
CTTGTTCGAACTTCAGCTAA+AGG - chr6_3:77152847-77152866 None:intergenic 40.0%
! AAGAATGAGGATTTGGTTCC+CGG + chr6_3:77152958-77152977 Msa0959740:CDS 40.0%
CCGGATTTCTCTGTATTGTT+TGG - chr6_3:77153225-77153244 None:intergenic 40.0%
ATTCTTCGAAATCTGGTCCA+AGG + chr6_3:77153259-77153278 Msa0959740:CDS 40.0%
AATCTGGTCCAAGGAAAGAT+AGG + chr6_3:77153268-77153287 Msa0959740:CDS 40.0%
! CGATGGATTCGGGAATATAA+TGG + chr6_3:77153399-77153418 Msa0959740:three_prime_UTR 40.0%
! ACGTTGATTACGAAGAAGGA+AGG + chr6_3:77153490-77153509 Msa0959740:three_prime_UTR 40.0%
!! TATAAATGGTGCCACTGAGA+AGG + chr6_3:77153576-77153595 Msa0959740:three_prime_UTR 40.0%
TAAACTTTCAGAAGCCGCTT+CGG - chr6_3:77153605-77153624 None:intergenic 40.0%
CTTGAGGATTCTGTGATAAC+AGG - chr6_3:77153844-77153863 None:intergenic 40.0%
GCATCAATCTCATTGTTCTC+AGG - chr6_3:77154054-77154073 None:intergenic 40.0%
! GAGATTGATGCTAGTTTGAC+TGG + chr6_3:77154063-77154082 Msa0959740:three_prime_UTR 40.0%
! AAGTGATGATTTGTCTCCTG+AGG + chr6_3:77154089-77154108 Msa0959740:three_prime_UTR 40.0%
! AGTGATGATTTGTCTCCTGA+GGG + chr6_3:77154090-77154109 Msa0959740:three_prime_UTR 40.0%
! GATTGACAACACTGATTGTC+AGG - chr6_3:77154162-77154181 None:intergenic 40.0%
GCTGTAATGCTATTGCATAG+CGG - chr6_3:77154218-77154237 None:intergenic 40.0%
GCTATAGTGCTATAGCATAG+TGG - chr6_3:77154284-77154303 None:intergenic 40.0%
TCTTCAGTTGTAGGACTATC+AGG - chr6_3:77154567-77154586 None:intergenic 40.0%
AGCATTACTGCTTCAGATGA+AGG + chr6_3:77154646-77154665 Msa0959740:three_prime_UTR 40.0%
!! AGAAACAGAAGTATCCGTGG+AGG + chr6_3:77152780-77152799 Msa0959740:CDS 45.0%
AGGTGAATTTGGTACCTCCA+CGG - chr6_3:77152797-77152816 None:intergenic 45.0%
GCTTTCGTAAAACCAGCGTT+GGG - chr6_3:77152895-77152914 None:intergenic 45.0%
GATGCCTCCTGTAAAGAATG+AGG + chr6_3:77152945-77152964 Msa0959740:CDS 45.0%
! AGAATGAGGATTTGGTTCCC+GGG + chr6_3:77152959-77152978 Msa0959740:CDS 45.0%
!!! GATTTTGGAGCTTTCACGGA+CGG + chr6_3:77153033-77153052 Msa0959740:CDS 45.0%
TGTAAAGGACGTTGCAAGTG+TGG + chr6_3:77153089-77153108 Msa0959740:CDS 45.0%
GGCTGTTGGACAAGAAGTTA+CGG + chr6_3:77153113-77153132 Msa0959740:CDS 45.0%
TGGACAAGAAGTTACGGTGA+AGG + chr6_3:77153119-77153138 Msa0959740:CDS 45.0%
!!! AGCATCAGCTTTTTCACGCA+TGG - chr6_3:77153184-77153203 None:intergenic 45.0%
ATGCGTGAAAAAGCTGATGC+TGG + chr6_3:77153183-77153202 Msa0959740:CDS 45.0%
AGGAGGGATTCTTCGAAATC+TGG + chr6_3:77153252-77153271 Msa0959740:CDS 45.0%
TGTTGTAGGTTAGGAGTTGC+AGG + chr6_3:77153304-77153323 Msa0959740:exon 45.0%
GTTGTAGGTTAGGAGTTGCA+GGG + chr6_3:77153305-77153324 Msa0959740:exon 45.0%
GTACGGTGAAGAATGTGATG+AGG + chr6_3:77153327-77153346 Msa0959740:three_prime_UTR 45.0%
GTGAAGAATGTGATGAGGAG+TGG + chr6_3:77153332-77153351 Msa0959740:three_prime_UTR 45.0%
TAGAAATCCTTCCTCCCCTT+CGG - chr6_3:77153359-77153378 None:intergenic 45.0%
AGGATTTCTACCGTAAGCTG+AGG + chr6_3:77153369-77153388 Msa0959740:three_prime_UTR 45.0%
CGAGATTTGCGTATCACAAG+AGG + chr6_3:77153460-77153479 Msa0959740:three_prime_UTR 45.0%
! AGCGACGTTGATTACGAAGA+AGG + chr6_3:77153486-77153505 Msa0959740:three_prime_UTR 45.0%
GAAGGAAGGAGCTAGTTCAT+TGG + chr6_3:77153504-77153523 Msa0959740:three_prime_UTR 45.0%
GAAGGAGCTAGTTCATTGGT+CGG + chr6_3:77153508-77153527 Msa0959740:three_prime_UTR 45.0%
ATCATCCGCAACAGTTGTTG+AGG - chr6_3:77153536-77153555 None:intergenic 45.0%
! CAATGTCGAAACTGACTCAC+TGG + chr6_3:77153690-77153709 Msa0959740:three_prime_UTR 45.0%
! AACTGACTCACTGGTTGAAG+TGG + chr6_3:77153699-77153718 Msa0959740:three_prime_UTR 45.0%
GGTTCAACTGTCTCTGTTAC+AGG - chr6_3:77153817-77153836 None:intergenic 45.0%
GTAACAGAGACAGTTGAACC+TGG + chr6_3:77153817-77153836 Msa0959740:three_prime_UTR 45.0%
CAGAATCCTCAAGAAGGAGA+AGG + chr6_3:77153851-77153870 Msa0959740:three_prime_UTR 45.0%
CAAGAACCTTCTCCTTCTTG+AGG - chr6_3:77153860-77153879 None:intergenic 45.0%
CCTTTATTCAAGCTTCCCTC+AGG - chr6_3:77154108-77154127 None:intergenic 45.0%
CCTGAGGGAAGCTTGAATAA+AGG + chr6_3:77154105-77154124 Msa0959740:three_prime_UTR 45.0%
! CAGGCAAGACGGATTTGAAA+AGG - chr6_3:77154143-77154162 None:intergenic 45.0%
! ACACTGATTGTCAGGCAAGA+CGG - chr6_3:77154154-77154173 None:intergenic 45.0%
GTTGTAGGACTATCAGGAGA+GGG - chr6_3:77154561-77154580 None:intergenic 45.0%
AGTTGTAGGACTATCAGGAG+AGG - chr6_3:77154562-77154581 None:intergenic 45.0%
TATGGCGCTTCTTCAGTTGT+AGG - chr6_3:77154576-77154595 None:intergenic 45.0%
TCAGATGAAGGCCTGAGAAA+AGG + chr6_3:77154658-77154677 Msa0959740:three_prime_UTR 45.0%
!! AGAAACAGAAGTATCCGTGG+AGG + chr6_3:77152780-77152799 Msa0959740:CDS 45.0%
AGGTGAATTTGGTACCTCCA+CGG - chr6_3:77152797-77152816 None:intergenic 45.0%
GCTTTCGTAAAACCAGCGTT+GGG - chr6_3:77152895-77152914 None:intergenic 45.0%
GATGCCTCCTGTAAAGAATG+AGG + chr6_3:77152945-77152964 Msa0959740:CDS 45.0%
! AGAATGAGGATTTGGTTCCC+GGG + chr6_3:77152959-77152978 Msa0959740:CDS 45.0%
!!! GATTTTGGAGCTTTCACGGA+CGG + chr6_3:77153033-77153052 Msa0959740:CDS 45.0%
TGTAAAGGACGTTGCAAGTG+TGG + chr6_3:77153089-77153108 Msa0959740:CDS 45.0%
GGCTGTTGGACAAGAAGTTA+CGG + chr6_3:77153113-77153132 Msa0959740:CDS 45.0%
TGGACAAGAAGTTACGGTGA+AGG + chr6_3:77153119-77153138 Msa0959740:CDS 45.0%
!!! AGCATCAGCTTTTTCACGCA+TGG - chr6_3:77153184-77153203 None:intergenic 45.0%
ATGCGTGAAAAAGCTGATGC+TGG + chr6_3:77153183-77153202 Msa0959740:CDS 45.0%
AGGAGGGATTCTTCGAAATC+TGG + chr6_3:77153252-77153271 Msa0959740:CDS 45.0%
TGTTGTAGGTTAGGAGTTGC+AGG + chr6_3:77153304-77153323 Msa0959740:exon 45.0%
GTTGTAGGTTAGGAGTTGCA+GGG + chr6_3:77153305-77153324 Msa0959740:exon 45.0%
GTACGGTGAAGAATGTGATG+AGG + chr6_3:77153327-77153346 Msa0959740:three_prime_UTR 45.0%
GTGAAGAATGTGATGAGGAG+TGG + chr6_3:77153332-77153351 Msa0959740:three_prime_UTR 45.0%
TAGAAATCCTTCCTCCCCTT+CGG - chr6_3:77153359-77153378 None:intergenic 45.0%
AGGATTTCTACCGTAAGCTG+AGG + chr6_3:77153369-77153388 Msa0959740:three_prime_UTR 45.0%
CGAGATTTGCGTATCACAAG+AGG + chr6_3:77153460-77153479 Msa0959740:three_prime_UTR 45.0%
! AGCGACGTTGATTACGAAGA+AGG + chr6_3:77153486-77153505 Msa0959740:three_prime_UTR 45.0%
GAAGGAAGGAGCTAGTTCAT+TGG + chr6_3:77153504-77153523 Msa0959740:three_prime_UTR 45.0%
GAAGGAGCTAGTTCATTGGT+CGG + chr6_3:77153508-77153527 Msa0959740:three_prime_UTR 45.0%
ATCATCCGCAACAGTTGTTG+AGG - chr6_3:77153536-77153555 None:intergenic 45.0%
! CAATGTCGAAACTGACTCAC+TGG + chr6_3:77153690-77153709 Msa0959740:three_prime_UTR 45.0%
! AACTGACTCACTGGTTGAAG+TGG + chr6_3:77153699-77153718 Msa0959740:three_prime_UTR 45.0%
GGTTCAACTGTCTCTGTTAC+AGG - chr6_3:77153817-77153836 None:intergenic 45.0%
GTAACAGAGACAGTTGAACC+TGG + chr6_3:77153817-77153836 Msa0959740:three_prime_UTR 45.0%
CAGAATCCTCAAGAAGGAGA+AGG + chr6_3:77153851-77153870 Msa0959740:three_prime_UTR 45.0%
CAAGAACCTTCTCCTTCTTG+AGG - chr6_3:77153860-77153879 None:intergenic 45.0%
CCTTTATTCAAGCTTCCCTC+AGG - chr6_3:77154108-77154127 None:intergenic 45.0%
CCTGAGGGAAGCTTGAATAA+AGG + chr6_3:77154105-77154124 Msa0959740:three_prime_UTR 45.0%
! CAGGCAAGACGGATTTGAAA+AGG - chr6_3:77154143-77154162 None:intergenic 45.0%
! ACACTGATTGTCAGGCAAGA+CGG - chr6_3:77154154-77154173 None:intergenic 45.0%
GTTGTAGGACTATCAGGAGA+GGG - chr6_3:77154561-77154580 None:intergenic 45.0%
AGTTGTAGGACTATCAGGAG+AGG - chr6_3:77154562-77154581 None:intergenic 45.0%
TATGGCGCTTCTTCAGTTGT+AGG - chr6_3:77154576-77154595 None:intergenic 45.0%
! CGTAAAACCAGCGTTGGGAT+CGG - chr6_3:77152890-77152909 None:intergenic 50.0%
GGCTTTCGTAAAACCAGCGT+TGG - chr6_3:77152896-77152915 None:intergenic 50.0%
! GAATGAGGATTTGGTTCCCG+GGG + chr6_3:77152960-77152979 Msa0959740:CDS 50.0%
TTTCCCAGTAAAAGCTGCCC+CGG - chr6_3:77152980-77152999 None:intergenic 50.0%
CAACAAACGCACCAAACCGT+TGG - chr6_3:77153014-77153033 None:intergenic 50.0%
AAAGGACGTTGCAAGTGTGG+TGG + chr6_3:77153092-77153111 Msa0959740:CDS 50.0%
TCGAAGAATCCCTCCTCTCA+GGG - chr6_3:77153248-77153267 None:intergenic 50.0%
TTCGAAGAATCCCTCCTCTC+AGG - chr6_3:77153249-77153268 None:intergenic 50.0%
AGGTTAGGAGTTGCAGGGTA+CGG + chr6_3:77153310-77153329 Msa0959740:exon 50.0%
CTACCGTAAGCTGAGGAAGA+TGG + chr6_3:77153376-77153395 Msa0959740:three_prime_UTR 50.0%
TCGCCATCTTCCTCAGCTTA+CGG - chr6_3:77153382-77153401 None:intergenic 50.0%
TAAGCTGAGGAAGATGGCGA+TGG + chr6_3:77153382-77153401 Msa0959740:three_prime_UTR 50.0%
! GAGGAAGATGGCGATGGATT+CGG + chr6_3:77153388-77153407 Msa0959740:three_prime_UTR 50.0%
! AGGAAGATGGCGATGGATTC+GGG + chr6_3:77153389-77153408 Msa0959740:three_prime_UTR 50.0%
CGGTTCCTCAACAACTGTTG+CGG + chr6_3:77153528-77153547 Msa0959740:three_prime_UTR 50.0%
CACTGAGAAGGAAACCGAAG+CGG + chr6_3:77153588-77153607 Msa0959740:three_prime_UTR 50.0%
GATTCTGTGATAACAGGGCC+AGG - chr6_3:77153838-77153857 None:intergenic 50.0%
! CGTAAAACCAGCGTTGGGAT+CGG - chr6_3:77152890-77152909 None:intergenic 50.0%
GGCTTTCGTAAAACCAGCGT+TGG - chr6_3:77152896-77152915 None:intergenic 50.0%
! GAATGAGGATTTGGTTCCCG+GGG + chr6_3:77152960-77152979 Msa0959740:CDS 50.0%
TTTCCCAGTAAAAGCTGCCC+CGG - chr6_3:77152980-77152999 None:intergenic 50.0%
CAACAAACGCACCAAACCGT+TGG - chr6_3:77153014-77153033 None:intergenic 50.0%
AAAGGACGTTGCAAGTGTGG+TGG + chr6_3:77153092-77153111 Msa0959740:CDS 50.0%
TCGAAGAATCCCTCCTCTCA+GGG - chr6_3:77153248-77153267 None:intergenic 50.0%
TTCGAAGAATCCCTCCTCTC+AGG - chr6_3:77153249-77153268 None:intergenic 50.0%
AGGTTAGGAGTTGCAGGGTA+CGG + chr6_3:77153310-77153329 Msa0959740:exon 50.0%
CTACCGTAAGCTGAGGAAGA+TGG + chr6_3:77153376-77153395 Msa0959740:three_prime_UTR 50.0%
TCGCCATCTTCCTCAGCTTA+CGG - chr6_3:77153382-77153401 None:intergenic 50.0%
TAAGCTGAGGAAGATGGCGA+TGG + chr6_3:77153382-77153401 Msa0959740:three_prime_UTR 50.0%
! GAGGAAGATGGCGATGGATT+CGG + chr6_3:77153388-77153407 Msa0959740:three_prime_UTR 50.0%
! AGGAAGATGGCGATGGATTC+GGG + chr6_3:77153389-77153408 Msa0959740:three_prime_UTR 50.0%
CGGTTCCTCAACAACTGTTG+CGG + chr6_3:77153528-77153547 Msa0959740:three_prime_UTR 50.0%
CACTGAGAAGGAAACCGAAG+CGG + chr6_3:77153588-77153607 Msa0959740:three_prime_UTR 50.0%
GATTCTGTGATAACAGGGCC+AGG - chr6_3:77153838-77153857 None:intergenic 50.0%
CTTAAGTCCGATCCCAACGC+TGG + chr6_3:77152880-77152899 Msa0959740:CDS 55.0%
!!! CCTCGCAGGTTTTGAACGTC+TGG - chr6_3:77152917-77152936 None:intergenic 55.0%
CCAGACGTTCAAAACCTGCG+AGG + chr6_3:77152914-77152933 Msa0959740:CDS 55.0%
! TTCCCGGGGCAGCTTTTACT+GGG + chr6_3:77152974-77152993 Msa0959740:CDS 55.0%
TTCCCAGTAAAAGCTGCCCC+GGG - chr6_3:77152979-77152998 None:intergenic 55.0%
GTTGCAAGTGTGGTGGCTGT+TGG + chr6_3:77153099-77153118 Msa0959740:CDS 55.0%
TGTGATGAGGAGTGGTCCGA+AGG + chr6_3:77153340-77153359 Msa0959740:three_prime_UTR 55.0%
GTGATGAGGAGTGGTCCGAA+GGG + chr6_3:77153341-77153360 Msa0959740:three_prime_UTR 55.0%
TGATGAGGAGTGGTCCGAAG+GGG + chr6_3:77153342-77153361 Msa0959740:three_prime_UTR 55.0%
GCGGATGATGAAAGCGACCA+AGG + chr6_3:77153547-77153566 Msa0959740:three_prime_UTR 55.0%
CGCTTCGGTTTCCTTCTCAG+TGG - chr6_3:77153590-77153609 None:intergenic 55.0%
CTTAAGTCCGATCCCAACGC+TGG + chr6_3:77152880-77152899 Msa0959740:CDS 55.0%
!!! CCTCGCAGGTTTTGAACGTC+TGG - chr6_3:77152917-77152936 None:intergenic 55.0%
CCAGACGTTCAAAACCTGCG+AGG + chr6_3:77152914-77152933 Msa0959740:CDS 55.0%
! TTCCCGGGGCAGCTTTTACT+GGG + chr6_3:77152974-77152993 Msa0959740:CDS 55.0%
TTCCCAGTAAAAGCTGCCCC+GGG - chr6_3:77152979-77152998 None:intergenic 55.0%
GTTGCAAGTGTGGTGGCTGT+TGG + chr6_3:77153099-77153118 Msa0959740:CDS 55.0%
TGTGATGAGGAGTGGTCCGA+AGG + chr6_3:77153340-77153359 Msa0959740:three_prime_UTR 55.0%
GTGATGAGGAGTGGTCCGAA+GGG + chr6_3:77153341-77153360 Msa0959740:three_prime_UTR 55.0%
TGATGAGGAGTGGTCCGAAG+GGG + chr6_3:77153342-77153361 Msa0959740:three_prime_UTR 55.0%
GCGGATGATGAAAGCGACCA+AGG + chr6_3:77153547-77153566 Msa0959740:three_prime_UTR 55.0%
CGCTTCGGTTTCCTTCTCAG+TGG - chr6_3:77153590-77153609 None:intergenic 55.0%
!! GGCATCTCGCTTTTCCTCGC+AGG - chr6_3:77152931-77152950 None:intergenic 60.0%
! GTTCCCGGGGCAGCTTTTAC+TGG + chr6_3:77152973-77152992 Msa0959740:CDS 60.0%
CAGAGAAATCCGGCCCTGAG+AGG + chr6_3:77153232-77153251 Msa0959740:CDS 60.0%
AGAAATCCGGCCCTGAGAGG+AGG + chr6_3:77153235-77153254 Msa0959740:CDS 60.0%
GAAATCCGGCCCTGAGAGGA+GGG + chr6_3:77153236-77153255 Msa0959740:CDS 60.0%
AGAATCCCTCCTCTCAGGGC+CGG - chr6_3:77153244-77153263 None:intergenic 60.0%
!! GGCATCTCGCTTTTCCTCGC+AGG - chr6_3:77152931-77152950 None:intergenic 60.0%
! GTTCCCGGGGCAGCTTTTAC+TGG + chr6_3:77152973-77152992 Msa0959740:CDS 60.0%
CAGAGAAATCCGGCCCTGAG+AGG + chr6_3:77153232-77153251 Msa0959740:CDS 60.0%
AGAAATCCGGCCCTGAGAGG+AGG + chr6_3:77153235-77153254 Msa0959740:CDS 60.0%
GAAATCCGGCCCTGAGAGGA+GGG + chr6_3:77153236-77153255 Msa0959740:CDS 60.0%
AGAATCCCTCCTCTCAGGGC+CGG - chr6_3:77153244-77153263 None:intergenic 60.0%
TGAGGAGTGGTCCGAAGGGG+AGG + chr6_3:77153345-77153364 Msa0959740:three_prime_UTR 65.0%
GAGTGGTCCGAAGGGGAGGA+AGG + chr6_3:77153349-77153368 Msa0959740:three_prime_UTR 65.0%
TGAGGAGTGGTCCGAAGGGG+AGG + chr6_3:77153345-77153364 Msa0959740:three_prime_UTR 65.0%
GAGTGGTCCGAAGGGGAGGA+AGG + chr6_3:77153349-77153368 Msa0959740:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 77152658 77154680 77152658 ID=Msa0959740;Name=Msa0959740
chr6_3 mRNA 77152658 77154680 77152658 ID=Msa0959740-mRNA-1;Parent=Msa0959740;Name=Msa0959740-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|1|0.66|1|0|0.66|3|807|217
chr6_3 exon 77152658 77153872 77152658 ID=Msa0959740-mRNA-1:exon:13818;Parent=Msa0959740-mRNA-1
chr6_3 exon 77154031 77154126 77154031 ID=Msa0959740-mRNA-1:exon:13819;Parent=Msa0959740-mRNA-1
chr6_3 exon 77154531 77154680 77154531 ID=Msa0959740-mRNA-1:exon:13820;Parent=Msa0959740-mRNA-1
chr6_3 CDS 77152658 77153311 77152658 ID=Msa0959740-mRNA-1:cds;Parent=Msa0959740-mRNA-1
chr6_3 three_prime_UTR 77153312 77153872 77153312 ID=Msa0959740-mRNA-1:three_prime_utr;Parent=Msa0959740-mRNA-1
chr6_3 three_prime_UTR 77154031 77154126 77154031 ID=Msa0959740-mRNA-1:three_prime_utr;Parent=Msa0959740-mRNA-1
chr6_3 three_prime_UTR 77154531 77154680 77154531 ID=Msa0959740-mRNA-1:three_prime_utr;Parent=Msa0959740-mRNA-1
Gene Sequence

>Msa0959740

ATGCTGTTTCCGCTGTTTGTGTCTGTGTTTCATATACAACAACATTTTAAGGAACAGTTTATCACTGAAATCCGCATTCATGTCATCCACAGAAAAAAATCTCGAACCTCCATATCAGCCAAAGAAACAGAAGTATCCGTGGAGGTACCAAATTCACCTGTTGCAGATGAAGTTTCTAATGAATTTCCTTTAGCTGAAGTTCGAACAAGTGAAGATTCATCTCTTAAGTCCGATCCCAACGCTGGTTTTACGAAAGCCAGACGTTCAAAACCTGCGAGGAAAAGCGAGATGCCTCCTGTAAAGAATGAGGATTTGGTTCCCGGGGCAGCTTTTACTGGGAAAGTAAAATCTATCCAACGGTTTGGTGCGTTTGTTGATTTTGGAGCTTTCACGGACGGACTTGTTCATATTTCAATGTTGAGTGATAGCTATGTAAAGGACGTTGCAAGTGTGGTGGCTGTTGGACAAGAAGTTACGGTGAAGGTGATTGAAGTGAATGCTGAAACTAAGCGTATATCTCTATCCATGCGTGAAAAAGCTGATGCTGGTAATCGTAATGATGCACCAAACAATACAGAGAAATCCGGCCCTGAGAGGAGGGATTCTTCGAAATCTGGTCCAAGGAAAGATAGGAAATCACAAAATTTGTTGTAG
Protein sequence

>Msa0959740

MLFPLFVSVFHIQQHFKEQFITEIRIHVIHRKKSRTSISAKETEVSVEVPNSPVADEVSNEFPLAEVRTSEDSSLKSDPNAGFTKARRSKPARKSEMPPVKNEDLVPGAAFTGKVKSIQRFGAFVDFGAFTDGLVHISMLSDSYVKDVASVVAVGQEVTVKVIEVNAETKRISLSMREKADAGNRNDAPNNTEKSGPERRDSSKSGPRKDRKSQNLL*