Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959870 | A0A151SY40 | 63.768 | 69 | 16 | 2 | 18 | 77 | 31 | 99 | 1.22e-18 | 82.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0901790 | Msa0959870 | 0.837496 | 5.022426e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959870 | MtrunA17_Chr3g0131571 | 83.077 | 65 | 2 | 2 | 22 | 77 | 95 | 159 | 1.54e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959870 | AT5G51010.1 | 56.522 | 69 | 21 | 2 | 17 | 76 | 85 | 153 | 1.44e-17 | 72.0 |
Find 16 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGGAGTTGTAGTTCTTGC+AGG | 0.375454 | 6_3:+77576343 | Msa0959870:CDS |
| ACTCCCACGGCAACTGCAAT+AGG | 0.395621 | 6_3:-77576328 | None:intergenic |
| TTTGTTGACATCTGTTGCAT+AGG | 0.431914 | 6_3:-77576121 | None:intergenic |
| TAGGGCTCAAACCTTCGTTT+AGG | 0.438783 | 6_3:-77576102 | None:intergenic |
| TTGTTGACATCTGTTGCATA+GGG | 0.445845 | 6_3:-77576120 | None:intergenic |
| CTTAGTTCATCGGGCTCCAT+CGG | 0.496160 | 6_3:-77573392 | None:intergenic |
| ACAACTGCTCTTAGTTCATC+GGG | 0.500188 | 6_3:-77573401 | None:intergenic |
| GACAACTGCTCTTAGTTCAT+CGG | 0.519655 | 6_3:-77573402 | None:intergenic |
| ACTTCCTATTGCAGTTGCCG+TGG | 0.541016 | 6_3:+77576324 | Msa0959870:CDS |
| CTTCCTATTGCAGTTGCCGT+GGG | 0.547663 | 6_3:+77576325 | Msa0959870:CDS |
| ATGTTAGAAAGGCGTTAGAA+AGG | 0.548907 | 6_3:+77576160 | Msa0959870:CDS |
| AAATGAAACAGATGTTAGAA+AGG | 0.550334 | 6_3:+77576149 | Msa0959870:CDS |
| GCCGAAAATGGTATCACCGA+TGG | 0.562882 | 6_3:+77573376 | None:intergenic |
| CATGAATGTCAAAATTCTGA+AGG | 0.564210 | 6_3:-77573424 | None:intergenic |
| TGCAAGAACTACAACTCCCA+CGG | 0.635141 | 6_3:-77576341 | None:intergenic |
| TTTGTGGTGCTCCTAAACGA+AGG | 0.648339 | 6_3:+77576091 | Msa0959870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGACTTTTGATTATTATATT+AGG | + | chr6_3:77573662-77573681 | Msa0959870:intron | 15.0% |
| !!! | TGGTATTTTATTTTATGAAT+TGG | + | chr6_3:77573989-77574008 | Msa0959870:intron | 15.0% |
| !!! | ATTTTTAAGGGATTTAATAT+CGG | + | chr6_3:77574089-77574108 | Msa0959870:intron | 15.0% |
| !!! | AAATTTGTTATTGAAACAAT+TGG | + | chr6_3:77574347-77574366 | Msa0959870:intron | 15.0% |
| !! | AATATATAGATAAATTGCAT+AGG | + | chr6_3:77574416-77574435 | Msa0959870:intron | 15.0% |
| !! | AAAATAGCATAAACAAATAT+CGG | + | chr6_3:77574818-77574837 | Msa0959870:intron | 15.0% |
| !! | TAGATTAAAACAAAAAGATA+TGG | - | chr6_3:77574853-77574872 | None:intergenic | 15.0% |
| !! | TAATATTATACTGATAAGAA+AGG | + | chr6_3:77575985-77576004 | Msa0959870:intron | 15.0% |
| !!! | TTACTTTTTTGTAGTTCTAA+AGG | + | chr6_3:77573470-77573489 | Msa0959870:intron | 20.0% |
| !! | AAATACGATAAAAATAGATG+AGG | - | chr6_3:77573507-77573526 | None:intergenic | 20.0% |
| !!! | TATCGTATTTCTTATTTTAC+AGG | + | chr6_3:77573517-77573536 | Msa0959870:intron | 20.0% |
| !! | GATTATTATATTAGGTAACT+TGG | + | chr6_3:77573670-77573689 | Msa0959870:intron | 20.0% |
| !! | AATTTACGATCATAAAATTG+TGG | - | chr6_3:77573916-77573935 | None:intergenic | 20.0% |
| !! | TTATTTGATGTAACTATCAT+TGG | + | chr6_3:77573938-77573957 | Msa0959870:intron | 20.0% |
| !!! | TTTATTTTATGAATTGGTCT+CGG | + | chr6_3:77573995-77574014 | Msa0959870:intron | 20.0% |
| !! | GTCATAAATTAATTGCATTT+CGG | + | chr6_3:77574062-77574081 | Msa0959870:intron | 20.0% |
| !!! | TTTCTGAAAATTTTGATTTG+CGG | + | chr6_3:77574161-77574180 | Msa0959870:intron | 20.0% |
| !! | TTTGTGATTTAATATCCTTT+AGG | + | chr6_3:77574273-77574292 | Msa0959870:intron | 20.0% |
| !!! | TGATTATTCTTTTATCACAT+TGG | + | chr6_3:77574706-77574725 | Msa0959870:intron | 20.0% |
| !! | TAACTTTATCATATTTGTCA+AGG | + | chr6_3:77575237-77575256 | Msa0959870:intron | 20.0% |
| !! | TGGTAAGATATATATTTAGT+TGG | + | chr6_3:77575646-77575665 | Msa0959870:intron | 20.0% |
| !!! | TATATATTTAGTTGGTTTTG+TGG | + | chr6_3:77575654-77575673 | Msa0959870:intron | 20.0% |
| !! | ATATTAGACCTTAATAAACT+TGG | - | chr6_3:77575971-77575990 | None:intergenic | 20.0% |
| !! | ATGTCAAAAACAGAAATAAT+TGG | - | chr6_3:77576274-77576293 | None:intergenic | 20.0% |
| !!! | GTATTTCTTATTTTACAGGT+AGG | + | chr6_3:77573521-77573540 | Msa0959870:intron | 25.0% |
| ! | TAAACTTCAAATATGACACA+TGG | + | chr6_3:77573567-77573586 | Msa0959870:intron | 25.0% |
| !! | TCAACAACTTTTAAGCTTTT+GGG | - | chr6_3:77573600-77573619 | None:intergenic | 25.0% |
| !! | TTCAACAACTTTTAAGCTTT+TGG | - | chr6_3:77573601-77573620 | None:intergenic | 25.0% |
| ! | AAGCTTAAAAGTTGTTGAAA+AGG | + | chr6_3:77573602-77573621 | Msa0959870:intron | 25.0% |
| ! | AGCAAATTTCTCACAAAATT+CGG | - | chr6_3:77573864-77573883 | None:intergenic | 25.0% |
| !!! | ATTTTGTGAGAAATTTGCTA+TGG | + | chr6_3:77573865-77573884 | Msa0959870:intron | 25.0% |
| !!! | TTTTGTGAGAAATTTGCTAT+GGG | + | chr6_3:77573866-77573885 | Msa0959870:intron | 25.0% |
| !!! | AATGTTAGTAATGTTTTGAC+AGG | + | chr6_3:77573890-77573909 | Msa0959870:intron | 25.0% |
| ! | CACATAAAAAAAAATGTCAC+TGG | + | chr6_3:77574205-77574224 | Msa0959870:intron | 25.0% |
| !!! | TATATTTTAAAAACCTCCGT+AGG | - | chr6_3:77574402-77574421 | None:intergenic | 25.0% |
| ! | TTATTCAATTCGTTTCCATT+AGG | + | chr6_3:77574630-77574649 | Msa0959870:intron | 25.0% |
| ! | TTTGATCAACTTAACTTTCT+CGG | - | chr6_3:77574679-77574698 | None:intergenic | 25.0% |
| ! | AAATTTGTCACAAAAGAGAA+AGG | - | chr6_3:77574774-77574793 | None:intergenic | 25.0% |
| ! | TATACAACAACACATACAAA+TGG | - | chr6_3:77574876-77574895 | None:intergenic | 25.0% |
| !! | GTTTTGCTTAAGATGTTAAA+AGG | + | chr6_3:77574951-77574970 | Msa0959870:intron | 25.0% |
| ! | AAAAATCTGACACAAATATG+TGG | - | chr6_3:77575051-77575070 | None:intergenic | 25.0% |
| ! | ACAAACAAAGTTGTGTTTAA+AGG | - | chr6_3:77575084-77575103 | None:intergenic | 25.0% |
| !! | TTTTAATATGCAGGTTACTT+TGG | - | chr6_3:77575120-77575139 | None:intergenic | 25.0% |
| !!! | ATAAGCAAGTTTTAATATGC+AGG | - | chr6_3:77575129-77575148 | None:intergenic | 25.0% |
| !! | CATATGAGTTTGTTTAATAC+TGG | - | chr6_3:77575174-77575193 | None:intergenic | 25.0% |
| ! | AGCATACATTTCAAACTTAT+CGG | - | chr6_3:77575283-77575302 | None:intergenic | 25.0% |
| ! | TTAATGTGTTACAATAATGC+TGG | + | chr6_3:77575362-77575381 | Msa0959870:intron | 25.0% |
| ! | AAAATGTATTGCCTAAATTG+TGG | - | chr6_3:77575858-77575877 | None:intergenic | 25.0% |
| ! | TTAGAGTTTCGATAAAATCA+TGG | + | chr6_3:77575876-77575895 | Msa0959870:intron | 25.0% |
| ! | GAAATGAGAATCTTTATGAT+TGG | - | chr6_3:77575940-77575959 | None:intergenic | 25.0% |
| ! | TTTCTCTACCAAGTTTATTA+AGG | + | chr6_3:77575960-77575979 | Msa0959870:intron | 25.0% |
| ! | TACTGATAAGAAAGGAAAAA+TGG | + | chr6_3:77575993-77576012 | Msa0959870:intron | 25.0% |
| ! | ACTGATAAGAAAGGAAAAAT+GGG | + | chr6_3:77575994-77576013 | Msa0959870:intron | 25.0% |
| ! | TTGTAAGAAGCAAAAGAAAT+AGG | + | chr6_3:77576022-77576041 | Msa0959870:intron | 25.0% |
| ! | TGTAAGAAGCAAAAGAAATA+GGG | + | chr6_3:77576023-77576042 | Msa0959870:intron | 25.0% |
| ! | AAATGAAACAGATGTTAGAA+AGG | + | chr6_3:77576149-77576168 | Msa0959870:CDS | 25.0% |
| ! | ATGCAAAAAGAAAATGACTA+TGG | - | chr6_3:77576232-77576251 | None:intergenic | 25.0% |
| !!! | TTTATTATGCTGATTTCAAC+AGG | + | chr6_3:77576296-77576315 | Msa0959870:intron | 25.0% |
| CATGAATGTCAAAATTCTGA+AGG | - | chr6_3:77573427-77573446 | None:intergenic | 30.0% | |
| !! | CTTCAGAATTTTGACATTCA+TGG | + | chr6_3:77573425-77573444 | Msa0959870:CDS | 30.0% |
| !! | GAATTTTGACATTCATGGTA+AGG | + | chr6_3:77573430-77573449 | Msa0959870:intron | 30.0% |
| ! | AAGTAAGTACGATTTTCACT+GGG | - | chr6_3:77573456-77573475 | None:intergenic | 30.0% |
| ! | AAAGTAAGTACGATTTTCAC+TGG | - | chr6_3:77573457-77573476 | None:intergenic | 30.0% |
| TTACAGGTAGGTGTTTATTA+AGG | + | chr6_3:77573533-77573552 | Msa0959870:intron | 30.0% | |
| ! | AGTCTAACATTGATGATAAG+TGG | - | chr6_3:77573647-77573666 | None:intergenic | 30.0% |
| CATTGGAATCTTATATTGTG+TGG | + | chr6_3:77573955-77573974 | Msa0959870:intron | 30.0% | |
| TATAAATGTTGCAGCTAGAT+TGG | + | chr6_3:77574040-77574059 | Msa0959870:intron | 30.0% | |
| ! | CATTTCGGTTGCATTTTTAA+GGG | + | chr6_3:77574077-77574096 | Msa0959870:intron | 30.0% |
| !! | ATTGCATAGGTTATTTCTAC+TGG | + | chr6_3:77574429-77574448 | Msa0959870:intron | 30.0% |
| ACACTACATTTAGACACATA+TGG | - | chr6_3:77574481-77574500 | None:intergenic | 30.0% | |
| TTGCCAGACTAAAATAATAG+TGG | + | chr6_3:77574536-77574555 | Msa0959870:intron | 30.0% | |
| !!! | CATCCACTATTATTTTAGTC+TGG | - | chr6_3:77574542-77574561 | None:intergenic | 30.0% |
| TAAGATGTTAAAAGGTCCAT+AGG | + | chr6_3:77574959-77574978 | Msa0959870:intron | 30.0% | |
| AAGATGTTAAAAGGTCCATA+GGG | + | chr6_3:77574960-77574979 | Msa0959870:intron | 30.0% | |
| AAATCAGACATCTTACGTAT+TGG | - | chr6_3:77575214-77575233 | None:intergenic | 30.0% | |
| AATACGTAAGATGTCTGATT+TGG | + | chr6_3:77575213-77575232 | Msa0959870:intron | 30.0% | |
| CTCAATTTCATCAAGTCATT+AGG | - | chr6_3:77575410-77575429 | None:intergenic | 30.0% | |
| !!! | TCTGTTTCTATTCCGTTTTA+TGG | + | chr6_3:77575487-77575506 | Msa0959870:intron | 30.0% |
| ! | ATTAACTGTCATGGATTACT+TGG | + | chr6_3:77575745-77575764 | Msa0959870:intron | 30.0% |
| ! | TTAACTGTCATGGATTACTT+GGG | + | chr6_3:77575746-77575765 | Msa0959870:intron | 30.0% |
| TCAAATTCTAAGTGCATGTT+AGG | + | chr6_3:77575789-77575808 | Msa0959870:intron | 30.0% | |
| CACAATTGTTACCACAATTT+AGG | + | chr6_3:77575844-77575863 | Msa0959870:intron | 30.0% | |
| CTCTTAATTTCTGAATTTGG+TGG | - | chr6_3:77575904-77575923 | None:intergenic | 30.0% | |
| CTGCTCTTAATTTCTGAATT+TGG | - | chr6_3:77575907-77575926 | None:intergenic | 30.0% | |
| GTAAGAAGCAAAAGAAATAG+GGG | + | chr6_3:77576024-77576043 | Msa0959870:intron | 30.0% | |
| GCATTATGATTGTCTGAAAA+TGG | + | chr6_3:77576058-77576077 | Msa0959870:intron | 30.0% | |
| ! | CTAACATTGATGATAAGTGG+CGG | - | chr6_3:77573644-77573663 | None:intergenic | 35.0% |
| ! | GCATTTCGGTTGCATTTTTA+AGG | + | chr6_3:77574076-77574095 | Msa0959870:intron | 35.0% |
| TCTTGATTGGATCTTAGTCA+TGG | + | chr6_3:77574120-77574139 | Msa0959870:intron | 35.0% | |
| ATCTTAGTCATGGAAGCTAA+TGG | + | chr6_3:77574130-77574149 | Msa0959870:intron | 35.0% | |
| !!! | AAATTTTGATTTGCGGCTGT+TGG | + | chr6_3:77574168-77574187 | Msa0959870:intron | 35.0% |
| CGAAGAAGACATAAACCTAA+AGG | - | chr6_3:77574291-77574310 | None:intergenic | 35.0% | |
| CAATTGGCAAATCATCTACA+AGG | + | chr6_3:77574363-77574382 | Msa0959870:intron | 35.0% | |
| AGGATAATGAACACAACCTA+CGG | + | chr6_3:77574383-77574402 | Msa0959870:intron | 35.0% | |
| TCCATTAGGTACCTAACAAA+TGG | + | chr6_3:77574644-77574663 | Msa0959870:intron | 35.0% | |
| ! | ACCATTTGTTAGGTACCTAA+TGG | - | chr6_3:77574648-77574667 | None:intergenic | 35.0% |
| GGAGAAGAATACCATTTGTT+AGG | - | chr6_3:77574658-77574677 | None:intergenic | 35.0% | |
| GCATAAACAAATATCGGACA+TGG | + | chr6_3:77574824-77574843 | Msa0959870:intron | 35.0% | |
| TTGTTGTATATTCCCTGCAT+TGG | + | chr6_3:77574886-77574905 | Msa0959870:intron | 35.0% | |
| !! | TGTGTCAGATTTTTGTTTGC+AGG | + | chr6_3:77575057-77575076 | Msa0959870:intron | 35.0% |
| AGACATCTTACGTATTGGAA+TGG | - | chr6_3:77575209-77575228 | None:intergenic | 35.0% | |
| ATGTGTTACAATAATGCTGG+TGG | + | chr6_3:77575365-77575384 | Msa0959870:intron | 35.0% | |
| TGTGTTACAATAATGCTGGT+GGG | + | chr6_3:77575366-77575385 | Msa0959870:intron | 35.0% | |
| GAAATTGAGAACATTTCACG+TGG | + | chr6_3:77575421-77575440 | Msa0959870:intron | 35.0% | |
| ATTGTGTGGTGAAACTTTGT+GGG | - | chr6_3:77575585-77575604 | None:intergenic | 35.0% | |
| AATTGTGTGGTGAAACTTTG+TGG | - | chr6_3:77575586-77575605 | None:intergenic | 35.0% | |
| GTTTCACCACACAATTGTTA+AGG | + | chr6_3:77575590-77575609 | Msa0959870:intron | 35.0% | |
| TCAACTCCTTAACAATTGTG+TGG | - | chr6_3:77575599-77575618 | None:intergenic | 35.0% | |
| !!! | TGATGTGGTTTTTGGCAATT+TGG | + | chr6_3:77575626-77575645 | Msa0959870:intron | 35.0% |
| CGAAACAGAATTAACTGTCA+TGG | + | chr6_3:77575736-77575755 | Msa0959870:intron | 35.0% | |
| ! | AAATGGTGTTTTGCAGTTTG+TGG | + | chr6_3:77576075-77576094 | Msa0959870:intron | 35.0% |
| TTGTTGACATCTGTTGCATA+GGG | - | chr6_3:77576123-77576142 | None:intergenic | 35.0% | |
| TTTGTTGACATCTGTTGCAT+AGG | - | chr6_3:77576124-77576143 | None:intergenic | 35.0% | |
| !! | ATGTTAGAAAGGCGTTAGAA+AGG | + | chr6_3:77576160-77576179 | Msa0959870:CDS | 35.0% |
| TCCAAAGAGATGAAGCAATT+GGG | + | chr6_3:77576198-77576217 | Msa0959870:intron | 35.0% | |
| ACAACTGCTCTTAGTTCATC+GGG | - | chr6_3:77573404-77573423 | None:intergenic | 40.0% | |
| GACAACTGCTCTTAGTTCAT+CGG | - | chr6_3:77573405-77573424 | None:intergenic | 40.0% | |
| ATTGTGTGGATCAGAGTCAT+TGG | + | chr6_3:77573969-77573988 | Msa0959870:intron | 40.0% | |
| ATCGGCTAGAACTTCTTGAT+TGG | + | chr6_3:77574107-77574126 | Msa0959870:intron | 40.0% | |
| ATAATGAACACAACCTACGG+AGG | + | chr6_3:77574386-77574405 | Msa0959870:intron | 40.0% | |
| GCACAAAAACATCATCCCTA+TGG | - | chr6_3:77574978-77574997 | None:intergenic | 40.0% | |
| !! | TAGGGATGATGTTTTTGTGC+TGG | + | chr6_3:77574978-77574997 | Msa0959870:intron | 40.0% |
| TGGTGTAATGTGTGAGTAGA+GGG | + | chr6_3:77574998-77575017 | Msa0959870:intron | 40.0% | |
| GTGTTACAATAATGCTGGTG+GGG | + | chr6_3:77575367-77575386 | Msa0959870:intron | 40.0% | |
| GTGCTGCAAAAGCCATAAAA+CGG | - | chr6_3:77575502-77575521 | None:intergenic | 40.0% | |
| !! | AAGAGAGTAGAAGCACCATT+TGG | - | chr6_3:77575558-77575577 | None:intergenic | 40.0% |
| ! | ACAACCTCTGATGTGGTTTT+TGG | + | chr6_3:77575618-77575637 | Msa0959870:intron | 40.0% |
| ATTGCCAAAAACCACATCAG+AGG | - | chr6_3:77575625-77575644 | None:intergenic | 40.0% | |
| ATGTCTTTCAGAAGCTGTCT+TGG | + | chr6_3:77575680-77575699 | Msa0959870:intron | 40.0% | |
| TTTCAGAAGCTGTCTTGGTT+TGG | + | chr6_3:77575685-77575704 | Msa0959870:intron | 40.0% | |
| GTTAATTCTGTTTCGTCAGC+AGG | - | chr6_3:77575731-77575750 | None:intergenic | 40.0% | |
| GTTAGGTTCAGCGAATTTGA+TGG | + | chr6_3:77575806-77575825 | Msa0959870:intron | 40.0% | |
| CTCCAAAGAGATGAAGCAAT+TGG | + | chr6_3:77576197-77576216 | Msa0959870:intron | 40.0% | |
| ACCCAATTGCTTCATCTCTT+TGG | - | chr6_3:77576202-77576221 | None:intergenic | 40.0% | |
| ATTTGCGGCTGTTGGCATAA+AGG | + | chr6_3:77574176-77574195 | Msa0959870:intron | 45.0% | |
| ACTGGACTCTCAGACTTTGA+AGG | + | chr6_3:77574223-77574242 | Msa0959870:intron | 45.0% | |
| CTGGTGTAATGTGTGAGTAG+AGG | + | chr6_3:77574997-77575016 | Msa0959870:intron | 45.0% | |
| TTTGTGGTGCTCCTAAACGA+AGG | + | chr6_3:77576091-77576110 | Msa0959870:CDS | 45.0% | |
| TAGGGCTCAAACCTTCGTTT+AGG | - | chr6_3:77576105-77576124 | None:intergenic | 45.0% | |
| TGCAAGAACTACAACTCCCA+CGG | - | chr6_3:77576344-77576363 | None:intergenic | 45.0% | |
| !!! | ATATAATAAACATTAAATTT+TGG | - | chr6_3:77573801-77573820 | None:intergenic | 5.0% |
| CTTAGTTCATCGGGCTCCAT+CGG | - | chr6_3:77573395-77573414 | None:intergenic | 50.0% | |
| CATTGGATGCAGCTCATGAG+CGG | + | chr6_3:77574723-77574742 | Msa0959870:intron | 50.0% | |
| GAGCGGAGTTTGAACACGTA+AGG | + | chr6_3:77574740-77574759 | Msa0959870:intron | 50.0% | |
| TAACATCAGCAGAGCAGCCA+TGG | - | chr6_3:77574915-77574934 | None:intergenic | 50.0% | |
| ATTTGGACTGCTGGAGCAGT+CGG | - | chr6_3:77575541-77575560 | None:intergenic | 50.0% | |
| !! | AGAAGCACCATTTGGACTGC+TGG | - | chr6_3:77575550-77575569 | None:intergenic | 50.0% |
| GGAGTTGACAACCTCTGATG+TGG | + | chr6_3:77575611-77575630 | Msa0959870:intron | 50.0% | |
| ACTTCCTATTGCAGTTGCCG+TGG | + | chr6_3:77576324-77576343 | Msa0959870:CDS | 50.0% | |
| CTTCCTATTGCAGTTGCCGT+GGG | + | chr6_3:77576325-77576344 | Msa0959870:CDS | 50.0% | |
| GTGGGAGTTGTAGTTCTTGC+AGG | + | chr6_3:77576343-77576362 | Msa0959870:CDS | 50.0% | |
| !! | ATTCCCTGCATTGGCTGCCA+TGG | + | chr6_3:77574895-77574914 | Msa0959870:intron | 55.0% |
| TGCTGGTGGGGTTGTAAGCA+AGG | + | chr6_3:77575379-77575398 | Msa0959870:intron | 55.0% | |
| GACTGCTCCAGCAGTCCAAA+TGG | + | chr6_3:77575540-77575559 | Msa0959870:intron | 55.0% | |
| ACTCCCACGGCAACTGCAAT+AGG | - | chr6_3:77576331-77576350 | None:intergenic | 55.0% | |
| CAGCCATGGCAGCCAATGCA+GGG | - | chr6_3:77574901-77574920 | None:intergenic | 60.0% | |
| GCAGCCATGGCAGCCAATGC+AGG | - | chr6_3:77574902-77574921 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 77573383 | 77576396 | 77573383 | ID=Msa0959870;Name=Msa0959870 |
| chr6_3 | mRNA | 77573383 | 77576396 | 77573383 | ID=Msa0959870-mRNA-1;Parent=Msa0959870;Name=Msa0959870-mRNA-1;_AED=0.53;_eAED=0.85;_QI=0|0|0|0.66|1|1|3|0|77 |
| chr6_3 | exon | 77573383 | 77573446 | 77573383 | ID=Msa0959870-mRNA-1:exon:13888;Parent=Msa0959870-mRNA-1 |
| chr6_3 | exon | 77576091 | 77576181 | 77576091 | ID=Msa0959870-mRNA-1:exon:13889;Parent=Msa0959870-mRNA-1 |
| chr6_3 | exon | 77576318 | 77576396 | 77576318 | ID=Msa0959870-mRNA-1:exon:13890;Parent=Msa0959870-mRNA-1 |
| chr6_3 | CDS | 77573383 | 77573446 | 77573383 | ID=Msa0959870-mRNA-1:cds;Parent=Msa0959870-mRNA-1 |
| chr6_3 | CDS | 77576091 | 77576181 | 77576091 | ID=Msa0959870-mRNA-1:cds;Parent=Msa0959870-mRNA-1 |
| chr6_3 | CDS | 77576318 | 77576396 | 77576318 | ID=Msa0959870-mRNA-1:cds;Parent=Msa0959870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
