Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0901790 | KYP59719.1 | 65.625 | 64 | 13 | 2 | 26 | 80 | 36 | 99 | 1.32e-17 | 80.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0901790 | A0A151SY40 | 65.625 | 64 | 13 | 2 | 26 | 80 | 36 | 99 | 6.32e-18 | 80.9 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0901790 | Msa0959870 | 0.837496 | 5.022426e-57 | -8.615850e-47 |
Msa0901790 | Msa1114030 | 0.809679 | 1.679377e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0901790 | MtrunA17_Chr3g0131571 | 82.812 | 64 | 2 | 2 | 26 | 80 | 96 | 159 | 9.22e-19 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0901790 | AT5G51010.1 | 58.730 | 63 | 17 | 2 | 26 | 79 | 91 | 153 | 2.20e-16 | 69.3 |
Find 15 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATACGTAAGATGTCTGATT+TGG | 0.295596 | 6_1:+98644723 | None:intergenic |
AGCATACATTTCAAACTTAT+CGG | 0.341806 | 6_1:-98644790 | None:intergenic |
GTGGGAGTTGTAGTTCTTGC+AGG | 0.375454 | 6_1:+98645851 | Msa0901790:CDS |
ACTCCCACGGCAACTGCAAT+AGG | 0.395621 | 6_1:-98645836 | None:intergenic |
ATCAATAGTTTCTTGATCCT+TGG | 0.407175 | 6_1:-98644764 | None:intergenic |
TTTGTTGACATCTGTTGCAT+AGG | 0.431914 | 6_1:-98645627 | None:intergenic |
TAGGGCTCAAACCTTCGTTT+AGG | 0.438783 | 6_1:-98645608 | None:intergenic |
TTGTTGACATCTGTTGCATA+GGG | 0.445845 | 6_1:-98645626 | None:intergenic |
TAACTTTATCATATTTGCCA+AGG | 0.528266 | 6_1:+98644747 | Msa0901790:CDS |
ACTTCCTATTGCAGTTGCCG+TGG | 0.541016 | 6_1:+98645832 | Msa0901790:CDS |
CTTCCTATTGCAGTTGCCGT+GGG | 0.547663 | 6_1:+98645833 | Msa0901790:CDS |
ATGTTAGAAAGGCGTTAGAA+AGG | 0.548907 | 6_1:+98645666 | Msa0901790:CDS |
AAATGAAACAGATGTTAGAA+AGG | 0.550334 | 6_1:+98645655 | Msa0901790:CDS |
TGCAAGAACTACAACTCCCA+CGG | 0.635141 | 6_1:-98645849 | None:intergenic |
TTTGTGGTGCTCCTAAACGA+AGG | 0.648339 | 6_1:+98645597 | Msa0901790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATATTATACTGATAAGAA+AGG | + | chr6_1:98645491-98645510 | Msa0901790:intron | 15.0% |
!! | TAATATTATACTGATAAGAA+AGG | + | chr6_1:98645491-98645510 | Msa0901790:intron | 15.0% |
!! | TGGTAAGATATATATTTAGT+TGG | + | chr6_1:98645152-98645171 | Msa0901790:intron | 20.0% |
!!! | TATATATTTAGTTGGTTTTG+TGG | + | chr6_1:98645160-98645179 | Msa0901790:intron | 20.0% |
!! | ATATTAGACCTTAATAAACT+TGG | - | chr6_1:98645477-98645496 | None:intergenic | 20.0% |
!! | ATGTCAAAAACAGAAATAAT+TGG | - | chr6_1:98645782-98645801 | None:intergenic | 20.0% |
!! | TGGTAAGATATATATTTAGT+TGG | + | chr6_1:98645152-98645171 | Msa0901790:intron | 20.0% |
!!! | TATATATTTAGTTGGTTTTG+TGG | + | chr6_1:98645160-98645179 | Msa0901790:intron | 20.0% |
!! | ATATTAGACCTTAATAAACT+TGG | - | chr6_1:98645477-98645496 | None:intergenic | 20.0% |
!! | ATGTCAAAAACAGAAATAAT+TGG | - | chr6_1:98645782-98645801 | None:intergenic | 20.0% |
! | TAACTTTATCATATTTGCCA+AGG | + | chr6_1:98644747-98644766 | Msa0901790:CDS | 25.0% |
! | AGCATACATTTCAAACTTAT+CGG | - | chr6_1:98644793-98644812 | None:intergenic | 25.0% |
! | TTAATGTGTTACAATAATGC+TGG | + | chr6_1:98644868-98644887 | Msa0901790:intron | 25.0% |
! | AAAATGTATTGCCTAAATTG+TGG | - | chr6_1:98645364-98645383 | None:intergenic | 25.0% |
! | TTAGAGTTTCGATAAAATCA+TGG | + | chr6_1:98645382-98645401 | Msa0901790:intron | 25.0% |
! | GAAATGAGAATCTTTATGAT+TGG | - | chr6_1:98645446-98645465 | None:intergenic | 25.0% |
! | TTTCTCTACCAAGTTTATTA+AGG | + | chr6_1:98645466-98645485 | Msa0901790:intron | 25.0% |
! | TACTGATAAGAAAGGAAAAA+TGG | + | chr6_1:98645499-98645518 | Msa0901790:intron | 25.0% |
! | ACTGATAAGAAAGGAAAAAT+GGG | + | chr6_1:98645500-98645519 | Msa0901790:intron | 25.0% |
! | TTGTAAGAAGCAAAAGAAAT+AGG | + | chr6_1:98645528-98645547 | Msa0901790:intron | 25.0% |
! | TGTAAGAAGCAAAAGAAATA+GGG | + | chr6_1:98645529-98645548 | Msa0901790:intron | 25.0% |
! | AAATGAAACAGATGTTAGAA+AGG | + | chr6_1:98645655-98645674 | Msa0901790:CDS | 25.0% |
! | ATGCAAAAAGAAAATGACTA+TGG | - | chr6_1:98645738-98645757 | None:intergenic | 25.0% |
!!! | TTTATTATGCTGATTTCAAC+AGG | + | chr6_1:98645804-98645823 | Msa0901790:intron | 25.0% |
! | TAACTTTATCATATTTGCCA+AGG | + | chr6_1:98644747-98644766 | Msa0901790:CDS | 25.0% |
! | AGCATACATTTCAAACTTAT+CGG | - | chr6_1:98644793-98644812 | None:intergenic | 25.0% |
! | TTAATGTGTTACAATAATGC+TGG | + | chr6_1:98644868-98644887 | Msa0901790:intron | 25.0% |
! | AAAATGTATTGCCTAAATTG+TGG | - | chr6_1:98645364-98645383 | None:intergenic | 25.0% |
! | TTAGAGTTTCGATAAAATCA+TGG | + | chr6_1:98645382-98645401 | Msa0901790:intron | 25.0% |
! | GAAATGAGAATCTTTATGAT+TGG | - | chr6_1:98645446-98645465 | None:intergenic | 25.0% |
! | TTTCTCTACCAAGTTTATTA+AGG | + | chr6_1:98645466-98645485 | Msa0901790:intron | 25.0% |
! | TACTGATAAGAAAGGAAAAA+TGG | + | chr6_1:98645499-98645518 | Msa0901790:intron | 25.0% |
! | ACTGATAAGAAAGGAAAAAT+GGG | + | chr6_1:98645500-98645519 | Msa0901790:intron | 25.0% |
! | TTGTAAGAAGCAAAAGAAAT+AGG | + | chr6_1:98645528-98645547 | Msa0901790:intron | 25.0% |
! | TGTAAGAAGCAAAAGAAATA+GGG | + | chr6_1:98645529-98645548 | Msa0901790:intron | 25.0% |
! | AAATGAAACAGATGTTAGAA+AGG | + | chr6_1:98645655-98645674 | Msa0901790:CDS | 25.0% |
! | ATGCAAAAAGAAAATGACTA+TGG | - | chr6_1:98645738-98645757 | None:intergenic | 25.0% |
!!! | TTTATTATGCTGATTTCAAC+AGG | + | chr6_1:98645804-98645823 | Msa0901790:intron | 25.0% |
ATCAATAGTTTCTTGATCCT+TGG | - | chr6_1:98644767-98644786 | None:intergenic | 30.0% | |
CTCAATTTCATCAAGTCATT+AGG | - | chr6_1:98644916-98644935 | None:intergenic | 30.0% | |
!!! | TCTGTTTCTATTCCGTTTTA+TGG | + | chr6_1:98644993-98645012 | Msa0901790:intron | 30.0% |
! | ATTAACTGTCATGGATTACT+TGG | + | chr6_1:98645251-98645270 | Msa0901790:intron | 30.0% |
! | TTAACTGTCATGGATTACTT+GGG | + | chr6_1:98645252-98645271 | Msa0901790:intron | 30.0% |
TCAAATTCTAAGTGCATGTT+AGG | + | chr6_1:98645295-98645314 | Msa0901790:intron | 30.0% | |
CACAATTGTTACCACAATTT+AGG | + | chr6_1:98645350-98645369 | Msa0901790:intron | 30.0% | |
CTCTTAATTTCTGAATTTGG+TGG | - | chr6_1:98645410-98645429 | None:intergenic | 30.0% | |
CTGCTCTTAATTTCTGAATT+TGG | - | chr6_1:98645413-98645432 | None:intergenic | 30.0% | |
GTAAGAAGCAAAAGAAATAG+GGG | + | chr6_1:98645530-98645549 | Msa0901790:intron | 30.0% | |
GCATTATGATTGTCTGAAAA+TGG | + | chr6_1:98645564-98645583 | Msa0901790:intron | 30.0% | |
ATCAATAGTTTCTTGATCCT+TGG | - | chr6_1:98644767-98644786 | None:intergenic | 30.0% | |
CTCAATTTCATCAAGTCATT+AGG | - | chr6_1:98644916-98644935 | None:intergenic | 30.0% | |
!!! | TCTGTTTCTATTCCGTTTTA+TGG | + | chr6_1:98644993-98645012 | Msa0901790:intron | 30.0% |
! | ATTAACTGTCATGGATTACT+TGG | + | chr6_1:98645251-98645270 | Msa0901790:intron | 30.0% |
! | TTAACTGTCATGGATTACTT+GGG | + | chr6_1:98645252-98645271 | Msa0901790:intron | 30.0% |
TCAAATTCTAAGTGCATGTT+AGG | + | chr6_1:98645295-98645314 | Msa0901790:intron | 30.0% | |
CACAATTGTTACCACAATTT+AGG | + | chr6_1:98645350-98645369 | Msa0901790:intron | 30.0% | |
CTCTTAATTTCTGAATTTGG+TGG | - | chr6_1:98645410-98645429 | None:intergenic | 30.0% | |
CTGCTCTTAATTTCTGAATT+TGG | - | chr6_1:98645413-98645432 | None:intergenic | 30.0% | |
GTAAGAAGCAAAAGAAATAG+GGG | + | chr6_1:98645530-98645549 | Msa0901790:intron | 30.0% | |
GCATTATGATTGTCTGAAAA+TGG | + | chr6_1:98645564-98645583 | Msa0901790:intron | 30.0% | |
ATGTGTTACAATAATGCTGG+TGG | + | chr6_1:98644871-98644890 | Msa0901790:intron | 35.0% | |
TGTGTTACAATAATGCTGGT+GGG | + | chr6_1:98644872-98644891 | Msa0901790:intron | 35.0% | |
GAAATTGAGAACATTTCACG+TGG | + | chr6_1:98644927-98644946 | Msa0901790:intron | 35.0% | |
ATTGTGTGGTGAAACTTTGT+GGG | - | chr6_1:98645091-98645110 | None:intergenic | 35.0% | |
AATTGTGTGGTGAAACTTTG+TGG | - | chr6_1:98645092-98645111 | None:intergenic | 35.0% | |
GTTTCACCACACAATTGTTA+AGG | + | chr6_1:98645096-98645115 | Msa0901790:intron | 35.0% | |
TCAACTCCTTAACAATTGTG+TGG | - | chr6_1:98645105-98645124 | None:intergenic | 35.0% | |
!!! | TGATGTGGTTTTTGGCAATT+TGG | + | chr6_1:98645132-98645151 | Msa0901790:intron | 35.0% |
ATGTCTTTCAGAAGATGTCT+TGG | + | chr6_1:98645186-98645205 | Msa0901790:intron | 35.0% | |
TTTCAGAAGATGTCTTGGTT+TGG | + | chr6_1:98645191-98645210 | Msa0901790:intron | 35.0% | |
CGAAACAGAATTAACTGTCA+TGG | + | chr6_1:98645242-98645261 | Msa0901790:intron | 35.0% | |
GTTAGGTTCAGTGAATTTGA+TGG | + | chr6_1:98645312-98645331 | Msa0901790:intron | 35.0% | |
! | AAATGGTGTTTTGCAGTTTG+TGG | + | chr6_1:98645581-98645600 | Msa0901790:intron | 35.0% |
TTGTTGACATCTGTTGCATA+GGG | - | chr6_1:98645629-98645648 | None:intergenic | 35.0% | |
TTTGTTGACATCTGTTGCAT+AGG | - | chr6_1:98645630-98645649 | None:intergenic | 35.0% | |
!! | ATGTTAGAAAGGCGTTAGAA+AGG | + | chr6_1:98645666-98645685 | Msa0901790:CDS | 35.0% |
TCCAAAGAGATGAAGCAATT+GGG | + | chr6_1:98645704-98645723 | Msa0901790:intron | 35.0% | |
ATGTGTTACAATAATGCTGG+TGG | + | chr6_1:98644871-98644890 | Msa0901790:intron | 35.0% | |
TGTGTTACAATAATGCTGGT+GGG | + | chr6_1:98644872-98644891 | Msa0901790:intron | 35.0% | |
GAAATTGAGAACATTTCACG+TGG | + | chr6_1:98644927-98644946 | Msa0901790:intron | 35.0% | |
ATTGTGTGGTGAAACTTTGT+GGG | - | chr6_1:98645091-98645110 | None:intergenic | 35.0% | |
AATTGTGTGGTGAAACTTTG+TGG | - | chr6_1:98645092-98645111 | None:intergenic | 35.0% | |
GTTTCACCACACAATTGTTA+AGG | + | chr6_1:98645096-98645115 | Msa0901790:intron | 35.0% | |
TCAACTCCTTAACAATTGTG+TGG | - | chr6_1:98645105-98645124 | None:intergenic | 35.0% | |
!!! | TGATGTGGTTTTTGGCAATT+TGG | + | chr6_1:98645132-98645151 | Msa0901790:intron | 35.0% |
ATGTCTTTCAGAAGATGTCT+TGG | + | chr6_1:98645186-98645205 | Msa0901790:intron | 35.0% | |
TTTCAGAAGATGTCTTGGTT+TGG | + | chr6_1:98645191-98645210 | Msa0901790:intron | 35.0% | |
CGAAACAGAATTAACTGTCA+TGG | + | chr6_1:98645242-98645261 | Msa0901790:intron | 35.0% | |
GTTAGGTTCAGTGAATTTGA+TGG | + | chr6_1:98645312-98645331 | Msa0901790:intron | 35.0% | |
! | AAATGGTGTTTTGCAGTTTG+TGG | + | chr6_1:98645581-98645600 | Msa0901790:intron | 35.0% |
TTGTTGACATCTGTTGCATA+GGG | - | chr6_1:98645629-98645648 | None:intergenic | 35.0% | |
TTTGTTGACATCTGTTGCAT+AGG | - | chr6_1:98645630-98645649 | None:intergenic | 35.0% | |
!! | ATGTTAGAAAGGCGTTAGAA+AGG | + | chr6_1:98645666-98645685 | Msa0901790:CDS | 35.0% |
TCCAAAGAGATGAAGCAATT+GGG | + | chr6_1:98645704-98645723 | Msa0901790:intron | 35.0% | |
GTGTTACAATAATGCTGGTG+GGG | + | chr6_1:98644873-98644892 | Msa0901790:intron | 40.0% | |
GTGCTGCAAAAGCCATAAAA+CGG | - | chr6_1:98645008-98645027 | None:intergenic | 40.0% | |
!! | AAGAGAGTAGAAGCACCATT+TGG | - | chr6_1:98645064-98645083 | None:intergenic | 40.0% |
! | ACAACCTCTGATGTGGTTTT+TGG | + | chr6_1:98645124-98645143 | Msa0901790:intron | 40.0% |
ATTGCCAAAAACCACATCAG+AGG | - | chr6_1:98645131-98645150 | None:intergenic | 40.0% | |
GTTAATTCTGTTTCGTCAGC+AGG | - | chr6_1:98645237-98645256 | None:intergenic | 40.0% | |
CTCCAAAGAGATGAAGCAAT+TGG | + | chr6_1:98645703-98645722 | Msa0901790:intron | 40.0% | |
ACCCAATTGCTTCATCTCTT+TGG | - | chr6_1:98645708-98645727 | None:intergenic | 40.0% | |
GTGTTACAATAATGCTGGTG+GGG | + | chr6_1:98644873-98644892 | Msa0901790:intron | 40.0% | |
GTGCTGCAAAAGCCATAAAA+CGG | - | chr6_1:98645008-98645027 | None:intergenic | 40.0% | |
!! | AAGAGAGTAGAAGCACCATT+TGG | - | chr6_1:98645064-98645083 | None:intergenic | 40.0% |
! | ACAACCTCTGATGTGGTTTT+TGG | + | chr6_1:98645124-98645143 | Msa0901790:intron | 40.0% |
ATTGCCAAAAACCACATCAG+AGG | - | chr6_1:98645131-98645150 | None:intergenic | 40.0% | |
GTTAATTCTGTTTCGTCAGC+AGG | - | chr6_1:98645237-98645256 | None:intergenic | 40.0% | |
CTCCAAAGAGATGAAGCAAT+TGG | + | chr6_1:98645703-98645722 | Msa0901790:intron | 40.0% | |
ACCCAATTGCTTCATCTCTT+TGG | - | chr6_1:98645708-98645727 | None:intergenic | 40.0% | |
TTTGTGGTGCTCCTAAACGA+AGG | + | chr6_1:98645597-98645616 | Msa0901790:CDS | 45.0% | |
TAGGGCTCAAACCTTCGTTT+AGG | - | chr6_1:98645611-98645630 | None:intergenic | 45.0% | |
TGCAAGAACTACAACTCCCA+CGG | - | chr6_1:98645852-98645871 | None:intergenic | 45.0% | |
TTTGTGGTGCTCCTAAACGA+AGG | + | chr6_1:98645597-98645616 | Msa0901790:CDS | 45.0% | |
TAGGGCTCAAACCTTCGTTT+AGG | - | chr6_1:98645611-98645630 | None:intergenic | 45.0% | |
TGCAAGAACTACAACTCCCA+CGG | - | chr6_1:98645852-98645871 | None:intergenic | 45.0% | |
ATTTGGACTGCTGGAGCAGT+CGG | - | chr6_1:98645047-98645066 | None:intergenic | 50.0% | |
!! | AGAAGCACCATTTGGACTGC+TGG | - | chr6_1:98645056-98645075 | None:intergenic | 50.0% |
GGAGTTGACAACCTCTGATG+TGG | + | chr6_1:98645117-98645136 | Msa0901790:intron | 50.0% | |
ACTTCCTATTGCAGTTGCCG+TGG | + | chr6_1:98645832-98645851 | Msa0901790:CDS | 50.0% | |
CTTCCTATTGCAGTTGCCGT+GGG | + | chr6_1:98645833-98645852 | Msa0901790:CDS | 50.0% | |
GTGGGAGTTGTAGTTCTTGC+AGG | + | chr6_1:98645851-98645870 | Msa0901790:CDS | 50.0% | |
ATTTGGACTGCTGGAGCAGT+CGG | - | chr6_1:98645047-98645066 | None:intergenic | 50.0% | |
!! | AGAAGCACCATTTGGACTGC+TGG | - | chr6_1:98645056-98645075 | None:intergenic | 50.0% |
GGAGTTGACAACCTCTGATG+TGG | + | chr6_1:98645117-98645136 | Msa0901790:intron | 50.0% | |
ACTTCCTATTGCAGTTGCCG+TGG | + | chr6_1:98645832-98645851 | Msa0901790:CDS | 50.0% | |
CTTCCTATTGCAGTTGCCGT+GGG | + | chr6_1:98645833-98645852 | Msa0901790:CDS | 50.0% | |
GTGGGAGTTGTAGTTCTTGC+AGG | + | chr6_1:98645851-98645870 | Msa0901790:CDS | 50.0% | |
TGCTGGTGGGGTTGTAAGCA+AGG | + | chr6_1:98644885-98644904 | Msa0901790:intron | 55.0% | |
GACTGCTCCAGCAGTCCAAA+TGG | + | chr6_1:98645046-98645065 | Msa0901790:intron | 55.0% | |
ACTCCCACGGCAACTGCAAT+AGG | - | chr6_1:98645839-98645858 | None:intergenic | 55.0% | |
TGCTGGTGGGGTTGTAAGCA+AGG | + | chr6_1:98644885-98644904 | Msa0901790:intron | 55.0% | |
GACTGCTCCAGCAGTCCAAA+TGG | + | chr6_1:98645046-98645065 | Msa0901790:intron | 55.0% | |
ACTCCCACGGCAACTGCAAT+AGG | - | chr6_1:98645839-98645858 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 98644733 | 98645904 | 98644733 | ID=Msa0901790;Name=Msa0901790 |
chr6_1 | mRNA | 98644733 | 98645904 | 98644733 | ID=Msa0901790-mRNA-1;Parent=Msa0901790;Name=Msa0901790-mRNA-1;_AED=0.54;_eAED=0.85;_QI=0|0|0|0.66|0.5|0.66|3|0|80 |
chr6_1 | exon | 98644733 | 98644805 | 98644733 | ID=Msa0901790-mRNA-1:exon:17435;Parent=Msa0901790-mRNA-1 |
chr6_1 | exon | 98645597 | 98645687 | 98645597 | ID=Msa0901790-mRNA-1:exon:17436;Parent=Msa0901790-mRNA-1 |
chr6_1 | exon | 98645826 | 98645904 | 98645826 | ID=Msa0901790-mRNA-1:exon:17437;Parent=Msa0901790-mRNA-1 |
chr6_1 | CDS | 98644733 | 98644805 | 98644733 | ID=Msa0901790-mRNA-1:cds;Parent=Msa0901790-mRNA-1 |
chr6_1 | CDS | 98645597 | 98645687 | 98645597 | ID=Msa0901790-mRNA-1:cds;Parent=Msa0901790-mRNA-1 |
chr6_1 | CDS | 98645826 | 98645904 | 98645826 | ID=Msa0901790-mRNA-1:cds;Parent=Msa0901790-mRNA-1 |
Gene Sequence |
Protein sequence |