AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960070 MtrunA17_Chr6g0473021 99.329 894 6 0 1 894 1 894 0.0 1794
Msa0960070 MtrunA17_Chr3g0125831 54.275 269 117 4 317 585 323 585 2.19e-100 333
Msa0960070 MtrunA17_Chr1g0159441 51.579 285 132 4 306 590 322 600 3.28e-98 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960070 AT4G25520.1 45.624 857 295 27 75 883 9 742 7.79e-178 533
Msa0960070 AT4G25520.2 45.624 857 295 27 75 883 9 742 7.79e-178 533
Msa0960070 AT5G62090.1 50.912 603 215 17 304 893 281 815 1.38e-177 534
Msa0960070 AT5G62090.2 50.912 603 215 17 304 893 281 815 1.38e-177 534
Msa0960070 AT5G62090.3 50.912 603 215 17 304 893 281 815 1.38e-177 534
Msa0960070 AT4G25515.1 46.742 798 300 21 95 884 1 681 1.68e-177 530
Msa0960070 AT1G43850.2 54.647 269 116 4 317 585 304 566 3.87e-94 316
Msa0960070 AT1G43850.1 54.647 269 116 4 317 585 304 566 3.87e-94 316

Find 247 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACCTTGGTCCGGTTTC+TGG 0.004417 6_3:+79095867 Msa0960070:CDS
GTAACTGTGGATTACGATTT+TGG 0.087200 6_3:-79096415 None:intergenic
TCAAACAATATTAGTATTTC+TGG 0.136306 6_3:+79096065 Msa0960070:CDS
AGCAGGTGGGATATATTATT+TGG 0.184102 6_3:-79096302 None:intergenic
GAATATGGCAAAGAATAATT+TGG 0.196446 6_3:+79100221 Msa0960070:CDS
CAAAGAAGTGCAAGCATTAA+TGG 0.207098 6_3:+79095999 Msa0960070:CDS
AAGAAGCTGGTGAGGGATTC+TGG 0.224369 6_3:-79099900 None:intergenic
GCAAAGAATAATTTGGGTTT+TGG 0.226566 6_3:+79100228 Msa0960070:CDS
ACTCAACTTGTCAGTGTAAT+TGG 0.226766 6_3:+79100531 Msa0960070:three_prime_UTR
CTCCATTTGTGGTTGGAGTT+TGG 0.238832 6_3:-79100254 None:intergenic
CATCAGAAGATTCTGGTAAT+TGG 0.243250 6_3:-79099809 None:intergenic
AGACTTAACGTAGTCAAATT+TGG 0.255462 6_3:+79097722 Msa0960070:CDS
TGCACAAGGGTCCTGACTGC+TGG 0.272148 6_3:+79099049 Msa0960070:intron
CCAGCTTCTTTGCAAGGTGC+TGG 0.274078 6_3:+79099913 Msa0960070:CDS
AAGCAATAGTAATCACAATA+TGG 0.277217 6_3:+79099738 Msa0960070:CDS
TTTGAGCAACCTGAACTAAT+TGG 0.280593 6_3:-79098573 None:intergenic
CCAACCTTGGTCCGGTTTCT+GGG 0.289752 6_3:+79095868 Msa0960070:CDS
CTCAATTTGTCTATTGTTTG+AGG 0.306265 6_3:+79095618 Msa0960070:five_prime_UTR
TTTGCCTCATCAGAAGATTC+TGG 0.314520 6_3:-79099816 None:intergenic
CAGCTTCTTTGCAAGGTGCT+GGG 0.325798 6_3:+79099914 Msa0960070:CDS
GCCAATGGTCAAGGAAATAA+TGG 0.328082 6_3:+79100285 Msa0960070:CDS
AAGATTTGTTAGAACTTTGC+AGG 0.331751 6_3:+79099129 Msa0960070:CDS
AATATGGCAAAGAATAATTT+GGG 0.333666 6_3:+79100222 Msa0960070:CDS
CGCTTTCTTTAACAGTGATC+TGG 0.346150 6_3:+79100473 Msa0960070:CDS
TACTAGTAGATTACACTTGC+AGG 0.347743 6_3:-79100733 None:intergenic
CGTGAAGTAAGATTTCCTTC+TGG 0.348949 6_3:+79097785 Msa0960070:CDS
TCATCTGCTGTTGCAGTGAT+TGG 0.350351 6_3:-79100119 None:intergenic
AAATTTGACTACGTTAAGTC+TGG 0.354883 6_3:-79097720 None:intergenic
GTGAAGTAAGATTTCCTTCT+GGG 0.355713 6_3:+79097786 Msa0960070:CDS
AAAATCTCTAAAGCACCTAT+TGG 0.356672 6_3:-79100687 None:intergenic
TACCTCCCATGGCACCTTCT+CGG 0.358757 6_3:+79095706 Msa0960070:exon
GAAACTGCATTCGCTGAGCC+TGG 0.360815 6_3:-79096526 None:intergenic
GCTCAATCATCATCAAGTTC+TGG 0.361407 6_3:+79095744 Msa0960070:CDS
ACATATCCTGCAGTAGTTGC+TGG 0.363947 6_3:-79100143 None:intergenic
TTTGGAAATCTTAGAGAAAG+AGG 0.365537 6_3:+79095574 Msa0960070:five_prime_UTR
ACCCAATGTAAGTGGGAATA+TGG 0.366855 6_3:+79100206 Msa0960070:CDS
AAATCTGGAAGAAGGGGATT+TGG 0.370643 6_3:+79097575 Msa0960070:CDS
GACATATGCGGAACTAAATC+TGG 0.370733 6_3:+79097560 Msa0960070:CDS
AAATCGTAATCCACAGTTAC+AGG 0.371291 6_3:+79096418 Msa0960070:CDS
GCAGGTTTGTCGGTGAAGTT+TGG 0.376597 6_3:+79095556 Msa0960070:five_prime_UTR
TGCTTGCACTTCTTTGCATA+TGG 0.377246 6_3:-79095992 None:intergenic
GGCAATCGTGGTGCTTTGAC+CGG 0.380864 6_3:+79099760 Msa0960070:CDS
CACACACTCTTGAACTGCTT+TGG 0.381564 6_3:-79097828 None:intergenic
GGCAGAGCCTCCTCCATTTG+TGG 0.385110 6_3:-79100265 None:intergenic
ACAGGTCAACCAATTAGTTC+AGG 0.385319 6_3:+79098564 Msa0960070:intron
GCCATATTCCCACTTACATT+GGG 0.386693 6_3:-79100207 None:intergenic
GCGTCAGCTTGCGAAGAGTT+TGG 0.390189 6_3:+79099072 Msa0960070:CDS
ACCTCCCATGGCACCTTCTC+GGG 0.391943 6_3:+79095707 Msa0960070:exon
GCTGCTGTAGTGAGGGTAGA+TGG 0.399221 6_3:-79100002 None:intergenic
GATGAGCCAGCTTGAGAAGC+AGG 0.407901 6_3:-79096206 None:intergenic
CAGGCACTTGTGCACCCGTT+TGG 0.413768 6_3:-79096235 None:intergenic
TTGAGTCAGTCATGGCTTCC+AGG 0.414836 6_3:-79100514 None:intergenic
AAACTGTTACTCCTTGAAAC+AGG 0.415397 6_3:-79100309 None:intergenic
AAAGCGCTGTCTGTGAAGTC+AGG 0.416020 6_3:-79100456 None:intergenic
TGCCATATTCCCACTTACAT+TGG 0.423079 6_3:-79100208 None:intergenic
ACCTCAACAAAATCACTCTC+AGG 0.424286 6_3:+79100083 Msa0960070:CDS
GGCCAAACTCCAACCACAAA+TGG 0.432260 6_3:+79100252 Msa0960070:CDS
CACTTAATGAGCGCTGTTGA+AGG 0.436350 6_3:-79100050 None:intergenic
TTCACGGGTGCACAAGTGCC+TGG 0.440431 6_3:+79096263 Msa0960070:CDS
ACAGAGGAACCATCCATTGC+AGG 0.441574 6_3:-79096092 None:intergenic
TGTGAAGTCAGGGGCAAAAT+CGG 0.442003 6_3:-79100445 None:intergenic
TGAAAGATTTGTTGCTGAGC+CGG 0.442598 6_3:-79096494 None:intergenic
ATTTGTTTCTTCAGCATGCT+TGG 0.442668 6_3:+79097531 Msa0960070:intron
ATGGCACCTTCTCGGGTGGC+AGG 0.443888 6_3:+79095714 Msa0960070:CDS
CCGTATGATGGTGGTGGTGT+TGG 0.444125 6_3:+79096638 Msa0960070:CDS
GGCTCATCTTCGCACCAAAC+GGG 0.445319 6_3:+79096221 Msa0960070:CDS
AGGATAATAGTATTGCATAT+TGG 0.445753 6_3:+79096975 Msa0960070:intron
CTGCTGCCGCTGCTGTAGTG+AGG 0.446365 6_3:-79100010 None:intergenic
GTCATGACTCTTACTCCAAT+AGG 0.447795 6_3:+79100672 Msa0960070:three_prime_UTR
CCTTCTCGATGAAGTGAGCC+AGG 0.450422 6_3:-79099856 None:intergenic
TGGCTCATCTTCGCACCAAA+CGG 0.451424 6_3:+79096220 Msa0960070:CDS
CTTATGTGATTGTTTGATCC+AGG 0.451548 6_3:-79099718 None:intergenic
AGGTTGGAATGACCAGTTCC+AGG 0.452566 6_3:-79095852 None:intergenic
GACTCTTCTGCAGCAGCTGG+TGG 0.454343 6_3:+79100351 Msa0960070:CDS
CAAACAATATTAGTATTTCT+GGG 0.454378 6_3:+79096066 Msa0960070:CDS
AGCAATAGTAATCACAATAT+GGG 0.454584 6_3:+79099739 Msa0960070:CDS
ACGGAAGAGATATTGTTGTT+TGG 0.456283 6_3:+79100775 Msa0960070:three_prime_UTR
GAAAGATTTGTTGCTGAGCC+GGG 0.456474 6_3:-79096493 None:intergenic
CGGGCCATCACAAGCTGCTA+TGG 0.456754 6_3:+79099780 Msa0960070:CDS
TCTTCTGCAGCAGCTGGTGG+AGG 0.457790 6_3:+79100354 Msa0960070:CDS
GAGAAAGAGGAGATACAGTC+AGG 0.458752 6_3:+79095587 Msa0960070:five_prime_UTR
CTGCTGTAGTGAGGGTAGAT+GGG 0.459396 6_3:-79100001 None:intergenic
CAGTGATCTGGATGATAACA+TGG 0.459525 6_3:+79100485 Msa0960070:CDS
AGGATATGTCAAATAACAAT+GGG 0.460590 6_3:+79100157 Msa0960070:CDS
AAGCTGATGGCATTGAATCC+TGG 0.462617 6_3:+79099700 Msa0960070:CDS
CCCCTTGGTGATTGGAATCA+AGG 0.464760 6_3:-79095680 None:intergenic
CGTATTTACTCAAGACCTAA+AGG 0.464821 6_3:+79097892 Msa0960070:CDS
ATCGGAAGCAACGTCTTGTA+AGG 0.467151 6_3:-79100427 None:intergenic
TTTCTTGGGATTTCTGTGTA+AGG 0.470095 6_3:+79098005 Msa0960070:CDS
GTCGCTGTCTTTGATGATAG+AGG 0.470148 6_3:-79096691 None:intergenic
GCACAAGGGTCCTGACTGCT+GGG 0.470817 6_3:+79099050 Msa0960070:intron
TGGTCATTCCAACCTTGGTC+CGG 0.471673 6_3:+79095860 Msa0960070:CDS
GAAATAATGGACCTGTTTCA+AGG 0.474603 6_3:+79100298 Msa0960070:CDS
CCCAGAAACCGGACCAAGGT+TGG 0.476077 6_3:-79095868 None:intergenic
GTAGATTACACTTGCAGGCC+AGG 0.476217 6_3:-79100728 None:intergenic
CAAACGGGTGCACAAGTGCC+TGG 0.476595 6_3:+79096236 Msa0960070:CDS
GATGCAAATTCTGCACTCTC+TGG 0.480557 6_3:+79095963 Msa0960070:CDS
AGCTTCTTTGCAAGGTGCTG+GGG 0.481337 6_3:+79099915 Msa0960070:CDS
TGCATATTGGAGAAAATTTG+TGG 0.481757 6_3:+79096988 Msa0960070:CDS
CAAATGATGCAGCCCTCGGC+TGG 0.484088 6_3:+79096605 Msa0960070:CDS
ACAAGTGCCTGGATCTTTCA+CGG 0.484466 6_3:+79096247 Msa0960070:CDS
TGCTGCCGCTGCTGTAGTGA+GGG 0.489285 6_3:-79100009 None:intergenic
TATTTCTGGGTCACCTGCAA+TGG 0.492304 6_3:+79096079 Msa0960070:CDS
AAAACTGACCGTAGTTGCCT+GGG 0.493407 6_3:-79097095 None:intergenic
GGTGAATTCTGCATAGAGCC+TGG 0.493626 6_3:-79099949 None:intergenic
TCCATTATTTCCTTGACCAT+TGG 0.493782 6_3:-79100286 None:intergenic
CGGAACTAAATCTGGAAGAA+GGG 0.496413 6_3:+79097568 Msa0960070:CDS
TCTGCAGCAGCTGGTGGAGG+CGG 0.500960 6_3:+79100357 Msa0960070:CDS
GCTGGTGGAGGCGGCAACAA+TGG 0.501813 6_3:+79100366 Msa0960070:CDS
GGATCTTGAGTGAAAGATCC+AGG 0.501934 6_3:-79096281 None:intergenic
TCTAACACTATACCTGGAAC+TGG 0.502243 6_3:+79095840 Msa0960070:CDS
GCGGAACTAAATCTGGAAGA+AGG 0.502603 6_3:+79097567 Msa0960070:CDS
GCAGAATCAACAGAAGCTGC+AGG 0.503705 6_3:+79096160 Msa0960070:CDS
CCCTCACCAGCTTCTTTGCA+AGG 0.504492 6_3:+79099907 Msa0960070:CDS
CAGAGTACAATTTCTGAAAG+TGG 0.504850 6_3:+79098601 Msa0960070:CDS
AAAGATGCAGGAGATGGAAC+AGG 0.505007 6_3:+79099633 Msa0960070:CDS
TTCGAGGAAGAAGTTCTTCG+TGG 0.507746 6_3:-79098030 None:intergenic
GAGCCTCCTCCATTTGTGGT+TGG 0.509004 6_3:-79100261 None:intergenic
TTATTCATATCCCCAGAAAC+CGG 0.509783 6_3:-79095879 None:intergenic
GGTGTGAAGCGTCCGTATGA+TGG 0.509904 6_3:+79096626 Msa0960070:CDS
CCAGCACCTTGCAAAGAAGC+TGG 0.510142 6_3:-79099913 None:intergenic
TTTCTGAAAGTGGGTCAGAT+GGG 0.511298 6_3:+79098611 Msa0960070:CDS
CATAGTGGACCCAATGTAAG+TGG 0.512009 6_3:+79100198 Msa0960070:CDS
TCTGGGTCACCTGCAATGGA+TGG 0.512455 6_3:+79096083 Msa0960070:CDS
AAACTGCATTCGCTGAGCCT+GGG 0.515879 6_3:-79096525 None:intergenic
TGTGCACCCGTGAAAGATCC+AGG 0.516894 6_3:-79096254 None:intergenic
AATTATTTAGACTCAAAAGA+AGG 0.517001 6_3:+79100825 Msa0960070:three_prime_UTR
GTAAATGACAAGGGTGAGGC+GGG 0.517125 6_3:-79096041 None:intergenic
AGTGACTCTTCTGCAGCAGC+TGG 0.518460 6_3:+79100348 Msa0960070:CDS
GATCACAACGTTGGAGCACT+TGG 0.519657 6_3:+79099322 Msa0960070:CDS
TCGAAAGTTAGTTGCACCAC+AGG 0.521019 6_3:+79098048 Msa0960070:CDS
GCGACATATCAGATGTCCTC+TGG 0.526090 6_3:-79100395 None:intergenic
CATAGCAGCTTGTGATGGCC+CGG 0.526818 6_3:-79099779 None:intergenic
CAAGGTAGCTATCGTAAGCC+AGG 0.529043 6_3:-79095662 None:intergenic
TTCTGGTTTGAGTTACTGAA+AGG 0.529945 6_3:-79099883 None:intergenic
ATTTCTGAAAGTGGGTCAGA+TGG 0.531570 6_3:+79098610 Msa0960070:CDS
GATGATCCAGCAACTACTGC+AGG 0.531746 6_3:+79100137 Msa0960070:CDS
TGTGGTGCAACTAACTTTCG+AGG 0.533250 6_3:-79098046 None:intergenic
AATCTTTCAGTCGTTGCCCC+CGG 0.533553 6_3:+79096475 Msa0960070:CDS
GCAATCGTGGTGCTTTGACC+GGG 0.534883 6_3:+79099761 Msa0960070:CDS
GCAAACTCAGCGCCAAGTGT+TGG 0.535607 6_3:+79095921 Msa0960070:CDS
AACTCAATGAATTCAAGCCC+TGG 0.537180 6_3:+79099838 Msa0960070:CDS
AATGCAAAAGATGCAGGAGA+TGG 0.538660 6_3:+79099627 Msa0960070:CDS
TATCTCTTCCGTGTGTTGCA+CGG 0.540165 6_3:-79100764 None:intergenic
TATGATGGTGGTGGTGTTGG+AGG 0.540568 6_3:+79096641 Msa0960070:CDS
GCTGGGGCTGCTATAATCCC+AGG 0.542056 6_3:+79099931 Msa0960070:CDS
GAGATGGAACAGGCAGCAAA+TGG 0.542386 6_3:+79099643 Msa0960070:CDS
AGCAACAACAGCAAATGCAG+AGG 0.545148 6_3:+79096567 Msa0960070:CDS
GGAACTGGTCATTCCAACCT+TGG 0.546176 6_3:+79095855 Msa0960070:CDS
GGGGTAAAACACCAGCTGAA+TGG 0.548295 6_3:-79097075 None:intergenic
GGAGGCTCTGCCAATGGTCA+AGG 0.550765 6_3:+79100276 Msa0960070:CDS
CACTTTCAGAAATTGTACTC+TGG 0.552295 6_3:-79098600 None:intergenic
AAAGATTTGTTGCTGAGCCG+GGG 0.553303 6_3:-79096492 None:intergenic
AACTCATCTAACACTATACC+TGG 0.553687 6_3:+79095834 Msa0960070:CDS
GCACCTTCTCGGGTGGCAGG+AGG 0.555371 6_3:+79095717 Msa0960070:CDS
AGATGATATAATGCAACAGC+AGG 0.555604 6_3:+79096352 Msa0960070:CDS
AAACCTCCTGCCACCCGAGA+AGG 0.557804 6_3:-79095720 None:intergenic
GCTCCAAATGCAAAAGATGC+AGG 0.558369 6_3:+79099621 Msa0960070:CDS
CAGGATATGTCAAATAACAA+TGG 0.558761 6_3:+79100156 Msa0960070:CDS
GCTACAATCACTAAATGACT+TGG 0.559114 6_3:+79099096 Msa0960070:CDS
GCCACCCGAGAAGGTGCCAT+GGG 0.559219 6_3:-79095711 None:intergenic
CTGGCTCACTTCATCGAGAA+GGG 0.559974 6_3:+79099857 Msa0960070:CDS
TGCCACCCGAGAAGGTGCCA+TGG 0.561510 6_3:-79095712 None:intergenic
CTGGTTTGAGTTACTGAAAG+GGG 0.562385 6_3:-79099881 None:intergenic
AACGTTGGACACCATTCAGC+TGG 0.563736 6_3:+79097064 Msa0960070:CDS
AAGCGCTGTCTGTGAAGTCA+GGG 0.568237 6_3:-79100455 None:intergenic
AGAGTACAATTTCTGAAAGT+GGG 0.568485 6_3:+79098602 Msa0960070:CDS
CAGCTTCGTGTTGTTCGTGA+GGG 0.569042 6_3:+79097857 Msa0960070:CDS
CCTGGCTCACTTCATCGAGA+AGG 0.569293 6_3:+79099856 Msa0960070:CDS
ACCTTGATTCCAATCACCAA+GGG 0.569360 6_3:+79095679 Msa0960070:five_prime_UTR
AACGTAGTCAAATTTGGTGG+TGG 0.570431 6_3:+79097728 Msa0960070:CDS
CAACCTTGGTCCGGTTTCTG+GGG 0.570652 6_3:+79095869 Msa0960070:CDS
TCTGGTTTGAGTTACTGAAA+GGG 0.570960 6_3:-79099882 None:intergenic
CAAGTGCCTGGATCTTTCAC+GGG 0.575073 6_3:+79096248 Msa0960070:CDS
ACCCGAGAAGGTGCCATGGG+AGG 0.577327 6_3:-79095708 None:intergenic
GTGAATTCTGCATAGAGCCT+GGG 0.577345 6_3:-79099948 None:intergenic
TCCCATGGCACCTTCTCGGG+TGG 0.577436 6_3:+79095710 Msa0960070:exon
GTTTCTGGGGATATGAATAA+CGG 0.578565 6_3:+79095882 Msa0960070:CDS
ACCTTGCAAAGAAGCTGGTG+AGG 0.579868 6_3:-79099908 None:intergenic
CCAACACCACCACCATCATA+CGG 0.581250 6_3:-79096638 None:intergenic
CTACAATCACTAAATGACTT+GGG 0.582087 6_3:+79099097 Msa0960070:CDS
GCAGCTTCGTGTTGTTCGTG+AGG 0.582229 6_3:+79097856 Msa0960070:CDS
CTTAACGTAGTCAAATTTGG+TGG 0.585857 6_3:+79097725 Msa0960070:CDS
AATTTGACTACGTTAAGTCT+GGG 0.586300 6_3:-79097719 None:intergenic
AAAGAACTAGCTCCAACACT+TGG 0.586342 6_3:-79095933 None:intergenic
AAACACACTTAATAAGCTGA+TGG 0.587295 6_3:+79099687 Msa0960070:CDS
GAGGTACTGCATCAATCGAC+GGG 0.588234 6_3:-79096672 None:intergenic
CACCATCGTTGCTTTGCACG+AGG 0.589596 6_3:-79097025 None:intergenic
CTCCTCGTGCAAAGCAACGA+TGG 0.595692 6_3:+79097023 Msa0960070:CDS
AACTGCATTCGCTGAGCCTG+GGG 0.596330 6_3:-79096524 None:intergenic
AATCACTCTCAGGGACCTCA+AGG 0.596816 6_3:+79100093 Msa0960070:CDS
AATGGAGGAGGCTCTGCCAA+TGG 0.596871 6_3:+79100270 Msa0960070:CDS
TTGCATTTGGAGCTTTGGGG+TGG 0.597799 6_3:-79099611 None:intergenic
TGCTGTAGTGAGGGTAGATG+GGG 0.597895 6_3:-79100000 None:intergenic
AATCTTTCAGTCATTACCCC+AGG 0.598170 6_3:+79096508 Msa0960070:CDS
CGGACGCTTCACACCAGCCG+AGG 0.600439 6_3:-79096618 None:intergenic
ACAGCAAATGATGCAGCCCT+CGG 0.601152 6_3:+79096601 Msa0960070:CDS
GGAACTAAATCTGGAAGAAG+GGG 0.603444 6_3:+79097569 Msa0960070:CDS
TGCAGTGATTGGTTTCCTTG+AGG 0.604080 6_3:-79100108 None:intergenic
AGAGGTACTGCATCAATCGA+CGG 0.605840 6_3:-79096673 None:intergenic
CCTTGCAAAGAAGCTGGTGA+GGG 0.606576 6_3:-79099907 None:intergenic
TGTAAATGACAAGGGTGAGG+CGG 0.610200 6_3:-79096042 None:intergenic
GGACGCTTCACACCAGCCGA+GGG 0.617274 6_3:-79096617 None:intergenic
TTCTGAAAGTGGGTCAGATG+GGG 0.619067 6_3:+79098612 Msa0960070:CDS
GAACAGGCAGCAAATGGTCA+AGG 0.623367 6_3:+79099649 Msa0960070:CDS
ATTGCCATAGCAGCTTGTGA+TGG 0.623500 6_3:-79099784 None:intergenic
TACCTTGATTCCAATCACCA+AGG 0.624295 6_3:+79095678 Msa0960070:five_prime_UTR
TCACCTCACAACAGTAGTGG+TGG 0.625883 6_3:+79099967 Msa0960070:CDS
AATCACAATATGGGCAATCG+TGG 0.626493 6_3:+79099748 Msa0960070:CDS
ATTACCAGAATCTTCTGATG+AGG 0.627608 6_3:+79099812 Msa0960070:CDS
AAGCGTCCGTATGATGGTGG+TGG 0.627811 6_3:+79096632 Msa0960070:CDS
GTACAACAACAGTCTCATAG+TGG 0.628238 6_3:+79100183 Msa0960070:CDS
TCTAACATCATCAACCCAGA+AGG 0.631328 6_3:-79097800 None:intergenic
CAGAATCAACAGAAGCTGCA+GGG 0.632025 6_3:+79096161 Msa0960070:CDS
AAGATTTGTTGCTGAGCCGG+GGG 0.632626 6_3:-79096491 None:intergenic
AGAAAGAGGAGATACAGTCA+GGG 0.633773 6_3:+79095588 Msa0960070:five_prime_UTR
CAAACTCCAACCACAAATGG+AGG 0.635025 6_3:+79100255 Msa0960070:CDS
AGGCTATGTTTCAGCAACAG+AGG 0.635240 6_3:+79096438 Msa0960070:CDS
CCTCAACAAAATCACTCTCA+GGG 0.635858 6_3:+79100084 Msa0960070:CDS
ACTCCAACCACAAATGGAGG+AGG 0.636114 6_3:+79100258 Msa0960070:CDS
TTGTTTGATGTAAATGACAA+GGG 0.642823 6_3:-79096050 None:intergenic
GAGGGCTGCATCATTTGCTG+TGG 0.647770 6_3:-79096599 None:intergenic
CTTCTCGATGAAGTGAGCCA+GGG 0.649483 6_3:-79099855 None:intergenic
CTGACAAGTTGAGTCAGTCA+TGG 0.652838 6_3:-79100522 None:intergenic
TGAAACATAGCCTGTAACTG+TGG 0.653059 6_3:-79096428 None:intergenic
AATGAGCGCTGTTGAAGGTG+TGG 0.653128 6_3:-79100045 None:intergenic
ATAGTGGACCCAATGTAAGT+GGG 0.659740 6_3:+79100199 Msa0960070:CDS
TGATGTAAATGACAAGGGTG+AGG 0.659830 6_3:-79096045 None:intergenic
AATTCACCTCACAACAGTAG+TGG 0.664907 6_3:+79099964 Msa0960070:CDS
GTGAAGCGTCCGTATGATGG+TGG 0.666690 6_3:+79096629 Msa0960070:CDS
AGAATTCTGCTGTACTACAG+AGG 0.673615 6_3:-79096108 None:intergenic
GAAGGAAATCTTACTTCACG+CGG 0.674498 6_3:-79097782 None:intergenic
GCAACAATGGATTCAACCAG+AGG 0.677444 6_3:+79100379 Msa0960070:CDS
ATCTACCCTCACTACAGCAG+CGG 0.677886 6_3:+79100004 Msa0960070:CDS
ATTGTTTGATGTAAATGACA+AGG 0.683725 6_3:-79096051 None:intergenic
ACTATATTATCTCTGTACAG+TGG 0.684756 6_3:+79100579 Msa0960070:three_prime_UTR
TTAGCATTATATAGTAACGT+TGG 0.685696 6_3:+79097049 Msa0960070:CDS
AAACTGACCGTAGTTGCCTG+GGG 0.689698 6_3:-79097094 None:intergenic
GATATGTCAAATAACAATGG+GGG 0.690886 6_3:+79100159 Msa0960070:CDS
AGTGATCTGGATGATAACAT+GGG 0.697820 6_3:+79100486 Msa0960070:CDS
AGCGCTGTCTGTGAAGTCAG+GGG 0.701664 6_3:-79100454 None:intergenic
CCTTGATTCCAATCACCAAG+GGG 0.715028 6_3:+79095680 Msa0960070:five_prime_UTR
AATCCACCACTACTGTTGTG+AGG 0.715466 6_3:-79099970 None:intergenic
GGATATGTCAAATAACAATG+GGG 0.717595 6_3:+79100158 Msa0960070:CDS
AATCAACAGAAGCTGCAGGG+TGG 0.731716 6_3:+79096164 Msa0960070:CDS
GCTTGGCAGTGTGACATATG+CGG 0.756800 6_3:+79097548 Msa0960070:CDS
CTTGATTCCAATCACCAAGG+GGG 0.762416 6_3:+79095681 Msa0960070:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACATATTTTTAACGTTT+TGG + chr6_3:79096890-79096909 Msa0960070:intron 15.0%
!! TCTTTAATTCAAAGATTTAA+TGG + chr6_3:79097182-79097201 Msa0960070:intron 15.0%
!! ATATAATTAATTGACTATGA+TGG - chr6_3:79098270-79098289 None:intergenic 15.0%
!! ATCATAGTCAATTAATTATA+TGG + chr6_3:79098269-79098288 Msa0960070:intron 15.0%
!!! TAATTATATGGTTAAACTTT+TGG + chr6_3:79098281-79098300 Msa0960070:intron 15.0%
!!! AATTATATGGTTAAACTTTT+GGG + chr6_3:79098282-79098301 Msa0960070:intron 15.0%
!!! TAATTTTTACCTTTTTTTAC+AGG + chr6_3:79098546-79098565 Msa0960070:intron 15.0%
!!! AAAGTTTTATAACTTTTCTT+TGG - chr6_3:79098826-79098845 None:intergenic 15.0%
!! AAAGAAAAGTTATAAAACTT+TGG + chr6_3:79098825-79098844 Msa0960070:intron 15.0%
!!! AAATTATGGAAAATGAATTT+TGG - chr6_3:79099207-79099226 None:intergenic 15.0%
!! GGATTTGATTAAATAAATTA+TGG - chr6_3:79099221-79099240 None:intergenic 15.0%
!! ATCATTATCTTCATAAATAT+TGG + chr6_3:79099362-79099381 Msa0960070:intron 15.0%
!!! ATAGCTTTTCAAAAAAAAAA+AGG - chr6_3:79099515-79099534 None:intergenic 15.0%
!! AGTAAAACAAGAAAAATATA+AGG - chr6_3:79100624-79100643 None:intergenic 15.0%
!! TCAAACAATATTAGTATTTC+TGG + chr6_3:79096065-79096084 Msa0960070:CDS 20.0%
!! CAAACAATATTAGTATTTCT+GGG + chr6_3:79096066-79096085 Msa0960070:CDS 20.0%
!! CAAATAAAAAAACTGACATT+TGG - chr6_3:79096716-79096735 None:intergenic 20.0%
!!! GTATGATTCATTTTATTTAG+TGG + chr6_3:79097343-79097362 Msa0960070:intron 20.0%
!! AATCCTATAATTTATGAGTT+TGG - chr6_3:79097431-79097450 None:intergenic 20.0%
!! ACAGTAAATATAGTTAGATA+TGG - chr6_3:79097931-79097950 None:intergenic 20.0%
!! CTGTAAAAAACAGTAAAAAA+TGG - chr6_3:79098855-79098874 None:intergenic 20.0%
!! AATATGGCAAAGAATAATTT+GGG + chr6_3:79100222-79100241 Msa0960070:CDS 20.0%
!!! TTTTCTTGTTTTACTTTTTG+TGG + chr6_3:79100629-79100648 Msa0960070:three_prime_UTR 20.0%
!! AATTATTTAGACTCAAAAGA+AGG + chr6_3:79100825-79100844 Msa0960070:three_prime_UTR 20.0%
! TTGTTTGATGTAAATGACAA+GGG - chr6_3:79096053-79096072 None:intergenic 25.0%
! ATTGTTTGATGTAAATGACA+AGG - chr6_3:79096054-79096073 None:intergenic 25.0%
! CATAAACTAAAGAAATCATG+TGG - chr6_3:79096757-79096776 None:intergenic 25.0%
!! CACATGATTTCTTTAGTTTA+TGG + chr6_3:79096755-79096774 Msa0960070:intron 25.0%
!! CTTCTTTTAACATCTAGATT+AGG + chr6_3:79096916-79096935 Msa0960070:intron 25.0%
! AGGATAATAGTATTGCATAT+TGG + chr6_3:79096975-79096994 Msa0960070:intron 25.0%
! TTAGCATTATATAGTAACGT+TGG + chr6_3:79097049-79097068 Msa0960070:CDS 25.0%
! TGTTATCATCATGTAATTGT+AGG + chr6_3:79097214-79097233 Msa0960070:intron 25.0%
!! AAACAAGTGATAGCTTTTAT+GGG - chr6_3:79097371-79097390 None:intergenic 25.0%
! TTTCTATCTCTCTCATAAAT+GGG + chr6_3:79097388-79097407 Msa0960070:intron 25.0%
! AAGCCAAACTCATAAATTAT+AGG + chr6_3:79097425-79097444 Msa0960070:intron 25.0%
! TATAACATTATCGCACAAAA+GGG - chr6_3:79097648-79097667 None:intergenic 25.0%
! TTATACTAATATCTGCATTC+TGG + chr6_3:79097663-79097682 Msa0960070:intron 25.0%
!! CAAATTATCAAGATTTTCAG+TGG - chr6_3:79097976-79097995 None:intergenic 25.0%
!!! AATTTGCTCAGATATTTTCT+TGG + chr6_3:79097990-79098009 Msa0960070:intron 25.0%
!! ATTTGCTCAGATATTTTCTT+GGG + chr6_3:79097991-79098010 Msa0960070:intron 25.0%
!!! ATGTTTTGAACAATCAAGAA+TGG - chr6_3:79098237-79098256 None:intergenic 25.0%
! ATTAATTGACTATGATGGTA+AGG - chr6_3:79098265-79098284 None:intergenic 25.0%
! AAAAGAAACTCCATCATTTA+GGG - chr6_3:79098411-79098430 None:intergenic 25.0%
!!! GAGTTTCTTTTGAAAATCTT+GGG + chr6_3:79098420-79098439 Msa0960070:intron 25.0%
!!! AGTTTCTTTTGAAAATCTTG+GGG + chr6_3:79098421-79098440 Msa0960070:intron 25.0%
!!! ATAGTGTAGAGGTATTATTT+TGG + chr6_3:79098510-79098529 Msa0960070:intron 25.0%
!! AATGTGTTTGAAGTTATACA+TGG + chr6_3:79098902-79098921 Msa0960070:intron 25.0%
! TTATACATGGTCAACTAATA+AGG + chr6_3:79098915-79098934 Msa0960070:intron 25.0%
!! ATAATGTTTCTTTTGCACAA+GGG + chr6_3:79099036-79099055 Msa0960070:intron 25.0%
! TTATATTTCATAGTTTCTGC+AGG + chr6_3:79099164-79099183 Msa0960070:intron 25.0%
! TATATTTCATAGTTTCTGCA+GGG + chr6_3:79099165-79099184 Msa0960070:intron 25.0%
! ATCTGTAAAAACATAACAGA+AGG - chr6_3:79099256-79099275 None:intergenic 25.0%
! TCAAAAAAAAAAAGGAACAG+AGG - chr6_3:79099507-79099526 None:intergenic 25.0%
!!! TTATTAAGTGTGTTTTGATC+AGG - chr6_3:79099682-79099701 None:intergenic 25.0%
! AAGCAATAGTAATCACAATA+TGG + chr6_3:79099738-79099757 Msa0960070:CDS 25.0%
! AGCAATAGTAATCACAATAT+GGG + chr6_3:79099739-79099758 Msa0960070:CDS 25.0%
! AGGATATGTCAAATAACAAT+GGG + chr6_3:79100157-79100176 Msa0960070:CDS 25.0%
! GAATATGGCAAAGAATAATT+TGG + chr6_3:79100221-79100240 Msa0960070:CDS 25.0%
!!! CAAAGAATAATTTGGGTTTT+GGG + chr6_3:79100229-79100248 Msa0960070:CDS 25.0%
!!! AAAGAATAATTTGGGTTTTG+GGG + chr6_3:79100230-79100249 Msa0960070:CDS 25.0%
!!! TGCTTTAGAGATTTTATTTG+AGG + chr6_3:79100695-79100714 Msa0960070:three_prime_UTR 25.0%
TTTGGAAATCTTAGAGAAAG+AGG + chr6_3:79095574-79095593 Msa0960070:five_prime_UTR 30.0%
CTCAATTTGTCTATTGTTTG+AGG + chr6_3:79095618-79095637 Msa0960070:five_prime_UTR 30.0%
! TTTTAAACACTAGTTAAGCC+TGG + chr6_3:79095644-79095663 Msa0960070:five_prime_UTR 30.0%
!!! AGTTCTGGAATTTTCTTTCA+AGG + chr6_3:79095759-79095778 Msa0960070:CDS 30.0%
!!! TTACGATTTTGGAATTGTGT+GGG - chr6_3:79096407-79096426 None:intergenic 30.0%
!!! ATTACGATTTTGGAATTGTG+TGG - chr6_3:79096408-79096427 None:intergenic 30.0%
! AGCAACAACCTTTTATGATT+TGG + chr6_3:79096778-79096797 Msa0960070:intron 30.0%
! GCAACAACCTTTTATGATTT+GGG + chr6_3:79096779-79096798 Msa0960070:intron 30.0%
! CAACAACCTTTTATGATTTG+GGG + chr6_3:79096780-79096799 Msa0960070:intron 30.0%
AAACATCCCCAAATCATAAA+AGG - chr6_3:79096789-79096808 None:intergenic 30.0%
! TTTTGTTGATCTGTTTTCTC+AGG + chr6_3:79096955-79096974 Msa0960070:intron 30.0%
TGCATATTGGAGAAAATTTG+TGG + chr6_3:79096988-79097007 Msa0960070:CDS 30.0%
GGAATAACATGGAAAGAATA+AGG - chr6_3:79097125-79097144 None:intergenic 30.0%
TTTCCATGTTATTCCATGAT+AGG + chr6_3:79097130-79097149 Msa0960070:intron 30.0%
ACAAATGGACAATAACTAGA+TGG - chr6_3:79097295-79097314 None:intergenic 30.0%
! GAAACAAGTGATAGCTTTTA+TGG - chr6_3:79097372-79097391 None:intergenic 30.0%
GTTTCTATCTCTCTCATAAA+TGG + chr6_3:79097387-79097406 Msa0960070:intron 30.0%
TTCTATCTCTCTCATAAATG+GGG + chr6_3:79097389-79097408 Msa0960070:intron 30.0%
TCTCATAAATGGGGAATAAA+TGG + chr6_3:79097398-79097417 Msa0960070:intron 30.0%
! GAAGTACCATGACAATAAAA+GGG - chr6_3:79097477-79097496 None:intergenic 30.0%
!! AGAAGTACCATGACAATAAA+AGG - chr6_3:79097478-79097497 None:intergenic 30.0%
TGCTGAAGAAACAAATATCA+AGG - chr6_3:79097527-79097546 None:intergenic 30.0%
GTATAACATTATCGCACAAA+AGG - chr6_3:79097649-79097668 None:intergenic 30.0%
AATTTGACTACGTTAAGTCT+GGG - chr6_3:79097722-79097741 None:intergenic 30.0%
AAATTTGACTACGTTAAGTC+TGG - chr6_3:79097723-79097742 None:intergenic 30.0%
AGACTTAACGTAGTCAAATT+TGG + chr6_3:79097722-79097741 Msa0960070:CDS 30.0%
!!! GATCGATGAACTTTTGTTTT+TGG + chr6_3:79097754-79097773 Msa0960070:CDS 30.0%
AAAGAAACTCCATCATTTAG+GGG - chr6_3:79098410-79098429 None:intergenic 30.0%
CAAAAGAAACTCCATCATTT+AGG - chr6_3:79098412-79098431 None:intergenic 30.0%
!! GGAGTTTCTTTTGAAAATCT+TGG + chr6_3:79098419-79098438 Msa0960070:intron 30.0%
!!! AGAGGTATTATTTTGGAATG+TGG + chr6_3:79098517-79098536 Msa0960070:intron 30.0%
ATTGGTTGACCTGTAAAAAA+AGG - chr6_3:79098558-79098577 None:intergenic 30.0%
! AGAGTACAATTTCTGAAAGT+GGG + chr6_3:79098602-79098621 Msa0960070:CDS 30.0%
!!! GTATAATGCTTCCTGTTTTT+TGG + chr6_3:79098780-79098799 Msa0960070:intron 30.0%
ATGGTCAACTAATAAGGATA+GGG + chr6_3:79098921-79098940 Msa0960070:intron 30.0%
!!! ATAATTTGTTTTCTTGAGCC+AGG + chr6_3:79098969-79098988 Msa0960070:intron 30.0%
AGTATTAATCTCTACAAACC+TGG - chr6_3:79098990-79099009 None:intergenic 30.0%
! GATAATGTTTCTTTTGCACA+AGG + chr6_3:79099035-79099054 Msa0960070:intron 30.0%
CTACAATCACTAAATGACTT+GGG + chr6_3:79099097-79099116 Msa0960070:CDS 30.0%
!! AAGATTTGTTAGAACTTTGC+AGG + chr6_3:79099129-79099148 Msa0960070:CDS 30.0%
!!! ATATGTTTTGATCACAACGT+TGG + chr6_3:79099313-79099332 Msa0960070:CDS 30.0%
ATTAATAAACACAGGAACAG+AGG - chr6_3:79099541-79099560 None:intergenic 30.0%
GTAGTAGGATTAATAAACAC+AGG - chr6_3:79099549-79099568 None:intergenic 30.0%
!! TAATTTTTCAAACTCTCTGC+AGG - chr6_3:79099577-79099596 None:intergenic 30.0%
AAACACACTTAATAAGCTGA+TGG + chr6_3:79099687-79099706 Msa0960070:CDS 30.0%
CAGGATATGTCAAATAACAA+TGG + chr6_3:79100156-79100175 Msa0960070:CDS 30.0%
GGATATGTCAAATAACAATG+GGG + chr6_3:79100158-79100177 Msa0960070:CDS 30.0%
GATATGTCAAATAACAATGG+GGG + chr6_3:79100159-79100178 Msa0960070:CDS 30.0%
!! GCAAAGAATAATTTGGGTTT+TGG + chr6_3:79100228-79100247 Msa0960070:CDS 30.0%
!! AAGAATAATTTGGGTTTTGG+GGG + chr6_3:79100231-79100250 Msa0960070:CDS 30.0%
ACTATATTATCTCTGTACAG+TGG + chr6_3:79100579-79100598 Msa0960070:three_prime_UTR 30.0%
!! TTTTGTGGTCATTTTCTTGA+TGG + chr6_3:79100644-79100663 Msa0960070:three_prime_UTR 30.0%
!! AAAATCTCTAAAGCACCTAT+TGG - chr6_3:79100690-79100709 None:intergenic 30.0%
!!! ATTTGAGGTTGTTTTTTTCC+TGG + chr6_3:79100710-79100729 Msa0960070:three_prime_UTR 30.0%
! TTGTTGTACATGTGTTTTGC+AGG + chr6_3:79095538-79095557 Msa0960070:five_prime_UTR 35.0%
! TGGAATTTTCTTTCAAGGAG+AGG + chr6_3:79095764-79095783 Msa0960070:CDS 35.0%
! GGAATTTTCTTTCAAGGAGA+GGG + chr6_3:79095765-79095784 Msa0960070:CDS 35.0%
! GAATTTTCTTTCAAGGAGAG+GGG + chr6_3:79095766-79095785 Msa0960070:CDS 35.0%
AACTCATCTAACACTATACC+TGG + chr6_3:79095834-79095853 Msa0960070:CDS 35.0%
TTATTCATATCCCCAGAAAC+CGG - chr6_3:79095882-79095901 None:intergenic 35.0%
! GTTTCTGGGGATATGAATAA+CGG + chr6_3:79095882-79095901 Msa0960070:CDS 35.0%
! TAACGGAATTTTGAACAGTG+TGG + chr6_3:79095899-79095918 Msa0960070:CDS 35.0%
! CAAAGAAGTGCAAGCATTAA+TGG + chr6_3:79095999-79096018 Msa0960070:CDS 35.0%
AGCAGGTGGGATATATTATT+TGG - chr6_3:79096305-79096324 None:intergenic 35.0%
AGATGATATAATGCAACAGC+AGG + chr6_3:79096352-79096371 Msa0960070:CDS 35.0%
!!! TACGATTTTGGAATTGTGTG+GGG - chr6_3:79096406-79096425 None:intergenic 35.0%
!! GTAACTGTGGATTACGATTT+TGG - chr6_3:79096418-79096437 None:intergenic 35.0%
AAATCGTAATCCACAGTTAC+AGG + chr6_3:79096418-79096437 Msa0960070:CDS 35.0%
ACTAAAGAAATCATGTGGAC+AGG - chr6_3:79096752-79096771 None:intergenic 35.0%
CATCTAGATTAGGTACAACA+CGG + chr6_3:79096926-79096945 Msa0960070:intron 35.0%
CATCCTATCATGGAATAACA+TGG - chr6_3:79097136-79097155 None:intergenic 35.0%
ATTGCAGTATCATCCTATCA+TGG - chr6_3:79097146-79097165 None:intergenic 35.0%
AATTTACAGCTCTTGTCTAG+AGG - chr6_3:79097255-79097274 None:intergenic 35.0%
TGGTACTTCTGATTCTTTGA+AGG + chr6_3:79097488-79097507 Msa0960070:intron 35.0%
GGTACTTCTGATTCTTTGAA+GGG + chr6_3:79097489-79097508 Msa0960070:intron 35.0%
! ATTTGTTTCTTCAGCATGCT+TGG + chr6_3:79097531-79097550 Msa0960070:intron 35.0%
! ATTCTGGATTTGCTTAACAG+AGG + chr6_3:79097679-79097698 Msa0960070:intron 35.0%
CTTAACGTAGTCAAATTTGG+TGG + chr6_3:79097725-79097744 Msa0960070:CDS 35.0%
GTGAAGTAAGATTTCCTTCT+GGG + chr6_3:79097786-79097805 Msa0960070:CDS 35.0%
CGTATTTACTCAAGACCTAA+AGG + chr6_3:79097892-79097911 Msa0960070:CDS 35.0%
GGTGAAGATCTATAACCTTT+AGG - chr6_3:79097910-79097929 None:intergenic 35.0%
TTTCTTGGGATTTCTGTGTA+AGG + chr6_3:79098005-79098024 Msa0960070:CDS 35.0%
GAATCTTGTAGTGTAGCTAA+AGG - chr6_3:79098199-79098218 None:intergenic 35.0%
ACGTTCTTGAAATTTCCCAA+AGG + chr6_3:79098331-79098350 Msa0960070:intron 35.0%
GATAGAACTTTCACACCTTT+GGG - chr6_3:79098349-79098368 None:intergenic 35.0%
AAGTTCTATCCACTTTAACC+TGG + chr6_3:79098359-79098378 Msa0960070:intron 35.0%
CTTTGTCGCTGATAACTTTA+TGG + chr6_3:79098467-79098486 Msa0960070:intron 35.0%
! AATCCTGAATGATAGTGTAG+AGG + chr6_3:79098499-79098518 Msa0960070:intron 35.0%
ATACCTCTACACTATCATTC+AGG - chr6_3:79098505-79098524 None:intergenic 35.0%
TTTGAGCAACCTGAACTAAT+TGG - chr6_3:79098576-79098595 None:intergenic 35.0%
CACTTTCAGAAATTGTACTC+TGG - chr6_3:79098603-79098622 None:intergenic 35.0%
! CAGAGTACAATTTCTGAAAG+TGG + chr6_3:79098601-79098620 Msa0960070:CDS 35.0%
!! GTAACATGTAAGTTGATGCA+TGG + chr6_3:79098662-79098681 Msa0960070:intron 35.0%
! ACTCACTGATTGACATATTC+AGG + chr6_3:79098690-79098709 Msa0960070:intron 35.0%
CAACTCAATTGCCAAAAAAC+AGG - chr6_3:79098794-79098813 None:intergenic 35.0%
!!! CTGTTTTTTGGCAATTGAGT+TGG + chr6_3:79098792-79098811 Msa0960070:intron 35.0%
CATGGTCAACTAATAAGGAT+AGG + chr6_3:79098920-79098939 Msa0960070:intron 35.0%
TGGTCAACTAATAAGGATAG+GGG + chr6_3:79098922-79098941 Msa0960070:intron 35.0%
GCTACAATCACTAAATGACT+TGG + chr6_3:79099096-79099115 Msa0960070:CDS 35.0%
AACAGAAGGCAGAGAAAAAA+AGG - chr6_3:79099242-79099261 None:intergenic 35.0%
AAAAAAGGAACAGAGGCTAA+TGG - chr6_3:79099500-79099519 None:intergenic 35.0%
!! TCTTTTGCATTTGGAGCTTT+GGG - chr6_3:79099618-79099637 None:intergenic 35.0%
!! ATCTTTTGCATTTGGAGCTT+TGG - chr6_3:79099619-79099638 None:intergenic 35.0%
!!! TAAGTGTGTTTTGATCAGGT+GGG - chr6_3:79099678-79099697 None:intergenic 35.0%
!!! TTAAGTGTGTTTTGATCAGG+TGG - chr6_3:79099679-79099698 None:intergenic 35.0%
CTTATGTGATTGTTTGATCC+AGG - chr6_3:79099721-79099740 None:intergenic 35.0%
CATCAGAAGATTCTGGTAAT+TGG - chr6_3:79099812-79099831 None:intergenic 35.0%
ATTACCAGAATCTTCTGATG+AGG + chr6_3:79099812-79099831 Msa0960070:CDS 35.0%
! TCTGGTTTGAGTTACTGAAA+GGG - chr6_3:79099885-79099904 None:intergenic 35.0%
!! TTCTGGTTTGAGTTACTGAA+AGG - chr6_3:79099886-79099905 None:intergenic 35.0%
TCCATTATTTCCTTGACCAT+TGG - chr6_3:79100289-79100308 None:intergenic 35.0%
!! GAAATAATGGACCTGTTTCA+AGG + chr6_3:79100298-79100317 Msa0960070:CDS 35.0%
AAACTGTTACTCCTTGAAAC+AGG - chr6_3:79100312-79100331 None:intergenic 35.0%
AGTGATCTGGATGATAACAT+GGG + chr6_3:79100486-79100505 Msa0960070:CDS 35.0%
! ATGATAACATGGGTTTTACC+TGG + chr6_3:79100496-79100515 Msa0960070:CDS 35.0%
ACTCAACTTGTCAGTGTAAT+TGG + chr6_3:79100531-79100550 Msa0960070:three_prime_UTR 35.0%
TACTAGTAGATTACACTTGC+AGG - chr6_3:79100736-79100755 None:intergenic 35.0%
! ACGGAAGAGATATTGTTGTT+TGG + chr6_3:79100775-79100794 Msa0960070:three_prime_UTR 35.0%
! CATGTGTTTTGCAGGTTTGT+CGG + chr6_3:79095546-79095565 Msa0960070:five_prime_UTR 40.0%
AGAAAGAGGAGATACAGTCA+GGG + chr6_3:79095588-79095607 Msa0960070:five_prime_UTR 40.0%
TACCTTGATTCCAATCACCA+AGG + chr6_3:79095678-79095697 Msa0960070:five_prime_UTR 40.0%
ACCTTGATTCCAATCACCAA+GGG + chr6_3:79095679-79095698 Msa0960070:five_prime_UTR 40.0%
GCTCAATCATCATCAAGTTC+TGG + chr6_3:79095744-79095763 Msa0960070:CDS 40.0%
TCTAACACTATACCTGGAAC+TGG + chr6_3:79095840-79095859 Msa0960070:CDS 40.0%
AAAGAACTAGCTCCAACACT+TGG - chr6_3:79095936-79095955 None:intergenic 40.0%
TGCTTGCACTTCTTTGCATA+TGG - chr6_3:79095995-79096014 None:intergenic 40.0%
TGATGTAAATGACAAGGGTG+AGG - chr6_3:79096048-79096067 None:intergenic 40.0%
AGAATTCTGCTGTACTACAG+AGG - chr6_3:79096111-79096130 None:intergenic 40.0%
TGAAACATAGCCTGTAACTG+TGG - chr6_3:79096431-79096450 None:intergenic 40.0%
!! TGAAAGATTTGTTGCTGAGC+CGG - chr6_3:79096497-79096516 None:intergenic 40.0%
AATCTTTCAGTCATTACCCC+AGG + chr6_3:79096508-79096527 Msa0960070:CDS 40.0%
TTGTCCATTTGTGAGAGAGA+TGG + chr6_3:79097303-79097322 Msa0960070:intron 40.0%
! TCCTTGCCCTTTTATTGTCA+TGG + chr6_3:79097468-79097487 Msa0960070:intron 40.0%
ACCATGACAATAAAAGGGCA+AGG - chr6_3:79097472-79097491 None:intergenic 40.0%
GACATATGCGGAACTAAATC+TGG + chr6_3:79097560-79097579 Msa0960070:CDS 40.0%
CGGAACTAAATCTGGAAGAA+GGG + chr6_3:79097568-79097587 Msa0960070:CDS 40.0%
GGAACTAAATCTGGAAGAAG+GGG + chr6_3:79097569-79097588 Msa0960070:CDS 40.0%
AAATCTGGAAGAAGGGGATT+TGG + chr6_3:79097575-79097594 Msa0960070:CDS 40.0%
! AACGTAGTCAAATTTGGTGG+TGG + chr6_3:79097728-79097747 Msa0960070:CDS 40.0%
GAAGGAAATCTTACTTCACG+CGG - chr6_3:79097785-79097804 None:intergenic 40.0%
CGTGAAGTAAGATTTCCTTC+TGG + chr6_3:79097785-79097804 Msa0960070:CDS 40.0%
TCTAACATCATCAACCCAGA+AGG - chr6_3:79097803-79097822 None:intergenic 40.0%
TATGATTCCGCATGCTATGT+TGG + chr6_3:79098073-79098092 Msa0960070:intron 40.0%
CTTAGATCCAACATAGCATG+CGG - chr6_3:79098083-79098102 None:intergenic 40.0%
GGATAGAACTTTCACACCTT+TGG - chr6_3:79098350-79098369 None:intergenic 40.0%
! TTGGTTCTTCCAGGTTAAAG+TGG - chr6_3:79098371-79098390 None:intergenic 40.0%
ACAGGTCAACCAATTAGTTC+AGG + chr6_3:79098564-79098583 Msa0960070:intron 40.0%
! ATTTCTGAAAGTGGGTCAGA+TGG + chr6_3:79098610-79098629 Msa0960070:CDS 40.0%
! TTTCTGAAAGTGGGTCAGAT+GGG + chr6_3:79098611-79098630 Msa0960070:CDS 40.0%
AGATAGTGAATCTGAGGAAG+AGG - chr6_3:79098720-79098739 None:intergenic 40.0%
CAAGAGAGATAGTGAATCTG+AGG - chr6_3:79098726-79098745 None:intergenic 40.0%
! GCAGCTGTTTCAAATTACAC+AGG + chr6_3:79099387-79099406 Msa0960070:intron 40.0%
!! CTTTTGCATTTGGAGCTTTG+GGG - chr6_3:79099617-79099636 None:intergenic 40.0%
! TCTCCTGCATCTTTTGCATT+TGG - chr6_3:79099627-79099646 None:intergenic 40.0%
AATGCAAAAGATGCAGGAGA+TGG + chr6_3:79099627-79099646 Msa0960070:CDS 40.0%
!!! AAGTGTGTTTTGATCAGGTG+GGG - chr6_3:79099677-79099696 None:intergenic 40.0%
AATCACAATATGGGCAATCG+TGG + chr6_3:79099748-79099767 Msa0960070:CDS 40.0%
TTTGCCTCATCAGAAGATTC+TGG - chr6_3:79099819-79099838 None:intergenic 40.0%
AACTCAATGAATTCAAGCCC+TGG + chr6_3:79099838-79099857 Msa0960070:CDS 40.0%
! CTGGTTTGAGTTACTGAAAG+GGG - chr6_3:79099884-79099903 None:intergenic 40.0%
AATTCACCTCACAACAGTAG+TGG + chr6_3:79099964-79099983 Msa0960070:CDS 40.0%
ACCTCAACAAAATCACTCTC+AGG + chr6_3:79100083-79100102 Msa0960070:CDS 40.0%
CCTCAACAAAATCACTCTCA+GGG + chr6_3:79100084-79100103 Msa0960070:CDS 40.0%
GTACAACAACAGTCTCATAG+TGG + chr6_3:79100183-79100202 Msa0960070:CDS 40.0%
!! ATAGTGGACCCAATGTAAGT+GGG + chr6_3:79100199-79100218 Msa0960070:CDS 40.0%
ACCCAATGTAAGTGGGAATA+TGG + chr6_3:79100206-79100225 Msa0960070:CDS 40.0%
GCCATATTCCCACTTACATT+GGG - chr6_3:79100210-79100229 None:intergenic 40.0%
TGCCATATTCCCACTTACAT+TGG - chr6_3:79100211-79100230 None:intergenic 40.0%
GCCAATGGTCAAGGAAATAA+TGG + chr6_3:79100285-79100304 Msa0960070:CDS 40.0%
CGCTTTCTTTAACAGTGATC+TGG + chr6_3:79100473-79100492 Msa0960070:CDS 40.0%
CAGTGATCTGGATGATAACA+TGG + chr6_3:79100485-79100504 Msa0960070:CDS 40.0%
GTCATGACTCTTACTCCAAT+AGG + chr6_3:79100672-79100691 Msa0960070:three_prime_UTR 40.0%
! CTTTTAATCCGTGCAACACA+CGG + chr6_3:79100756-79100775 Msa0960070:three_prime_UTR 40.0%
GAGAAAGAGGAGATACAGTC+AGG + chr6_3:79095587-79095606 Msa0960070:five_prime_UTR 45.0%
CCTTGATTCCAATCACCAAG+GGG + chr6_3:79095680-79095699 Msa0960070:five_prime_UTR 45.0%
CTTGATTCCAATCACCAAGG+GGG + chr6_3:79095681-79095700 Msa0960070:five_prime_UTR 45.0%
GATGCAAATTCTGCACTCTC+TGG + chr6_3:79095963-79095982 Msa0960070:CDS 45.0%
TGTAAATGACAAGGGTGAGG+CGG - chr6_3:79096045-79096064 None:intergenic 45.0%
!! TATTTCTGGGTCACCTGCAA+TGG + chr6_3:79096079-79096098 Msa0960070:CDS 45.0%
CAGAATCAACAGAAGCTGCA+GGG + chr6_3:79096161-79096180 Msa0960070:CDS 45.0%
ACAAGTGCCTGGATCTTTCA+CGG + chr6_3:79096247-79096266 Msa0960070:CDS 45.0%
GGATCTTGAGTGAAAGATCC+AGG - chr6_3:79096284-79096303 None:intergenic 45.0%
!!! CCTACGTTTTTTCAGCAGGT+GGG - chr6_3:79096318-79096337 None:intergenic 45.0%
AGGCTATGTTTCAGCAACAG+AGG + chr6_3:79096438-79096457 Msa0960070:CDS 45.0%
!! AAAGATTTGTTGCTGAGCCG+GGG - chr6_3:79096495-79096514 None:intergenic 45.0%
!! GAAAGATTTGTTGCTGAGCC+GGG - chr6_3:79096496-79096515 None:intergenic 45.0%
AGCAACAACAGCAAATGCAG+AGG + chr6_3:79096567-79096586 Msa0960070:CDS 45.0%
!! AGAGGTACTGCATCAATCGA+CGG - chr6_3:79096676-79096695 None:intergenic 45.0%
! GTCGCTGTCTTTGATGATAG+AGG - chr6_3:79096694-79096713 None:intergenic 45.0%
! TGTTTTACCCCAGGCAACTA+CGG + chr6_3:79097087-79097106 Msa0960070:CDS 45.0%
AAAACTGACCGTAGTTGCCT+GGG - chr6_3:79097098-79097117 None:intergenic 45.0%
AAAAACTGACCGTAGTTGCC+TGG - chr6_3:79097099-79097118 None:intergenic 45.0%
GTGTCCATCTCTCTCACAAA+TGG - chr6_3:79097310-79097329 None:intergenic 45.0%
GCGGAACTAAATCTGGAAGA+AGG + chr6_3:79097567-79097586 Msa0960070:CDS 45.0%
! TGGAAGAAGGGGATTTGGTA+TGG + chr6_3:79097580-79097599 Msa0960070:intron 45.0%
CACACACTCTTGAACTGCTT+TGG - chr6_3:79097831-79097850 None:intergenic 45.0%
TTCGAGGAAGAAGTTCTTCG+TGG - chr6_3:79098033-79098052 None:intergenic 45.0%
TGTGGTGCAACTAACTTTCG+AGG - chr6_3:79098049-79098068 None:intergenic 45.0%
TCGAAAGTTAGTTGCACCAC+AGG + chr6_3:79098048-79098067 Msa0960070:CDS 45.0%
CATGCGGAATCATATACCTG+TGG - chr6_3:79098067-79098086 None:intergenic 45.0%
GCACAAAGACACACAGAATG+TGG - chr6_3:79098151-79098170 None:intergenic 45.0%
!! CTGGTACATTTGGTTCTTCC+AGG - chr6_3:79098380-79098399 None:intergenic 45.0%
! ATCATTTAGGGGCACGAATC+TGG - chr6_3:79098399-79098418 None:intergenic 45.0%
AGATTCGTGCCCCTAAATGA+TGG + chr6_3:79098398-79098417 Msa0960070:intron 45.0%
AAAGACGACAGGTTACTCAG+TGG - chr6_3:79098447-79098466 None:intergenic 45.0%
! TTCTGAAAGTGGGTCAGATG+GGG + chr6_3:79098612-79098631 Msa0960070:CDS 45.0%
TCTCTGCAGGCAAATGTAGT+AGG - chr6_3:79099564-79099583 None:intergenic 45.0%
GCTCCAAATGCAAAAGATGC+AGG + chr6_3:79099621-79099640 Msa0960070:CDS 45.0%
AAAGATGCAGGAGATGGAAC+AGG + chr6_3:79099633-79099652 Msa0960070:CDS 45.0%
!!! AGTGTGTTTTGATCAGGTGG+GGG - chr6_3:79099676-79099695 None:intergenic 45.0%
! AAGCTGATGGCATTGAATCC+TGG + chr6_3:79099700-79099719 Msa0960070:CDS 45.0%
ATTGCCATAGCAGCTTGTGA+TGG - chr6_3:79099787-79099806 None:intergenic 45.0%
GTGAATTCTGCATAGAGCCT+GGG - chr6_3:79099951-79099970 None:intergenic 45.0%
AATCCACCACTACTGTTGTG+AGG - chr6_3:79099973-79099992 None:intergenic 45.0%
! CACTTAATGAGCGCTGTTGA+AGG - chr6_3:79100053-79100072 None:intergenic 45.0%
! CCCTGAGAGTGATTTTGTTG+AGG - chr6_3:79100087-79100106 None:intergenic 45.0%
!! TGCAGTGATTGGTTTCCTTG+AGG - chr6_3:79100111-79100130 None:intergenic 45.0%
TCATCTGCTGTTGCAGTGAT+TGG - chr6_3:79100122-79100141 None:intergenic 45.0%
ACATATCCTGCAGTAGTTGC+TGG - chr6_3:79100146-79100165 None:intergenic 45.0%
!! CATAGTGGACCCAATGTAAG+TGG + chr6_3:79100198-79100217 Msa0960070:CDS 45.0%
CTCCATTTGTGGTTGGAGTT+TGG - chr6_3:79100257-79100276 None:intergenic 45.0%
CAAACTCCAACCACAAATGG+AGG + chr6_3:79100255-79100274 Msa0960070:CDS 45.0%
! GCAACAATGGATTCAACCAG+AGG + chr6_3:79100379-79100398 Msa0960070:CDS 45.0%
ATCGGAAGCAACGTCTTGTA+AGG - chr6_3:79100430-79100449 None:intergenic 45.0%
TGTGAAGTCAGGGGCAAAAT+CGG - chr6_3:79100448-79100467 None:intergenic 45.0%
! CTGACAAGTTGAGTCAGTCA+TGG - chr6_3:79100525-79100544 None:intergenic 45.0%
TATCTCTTCCGTGTGTTGCA+CGG - chr6_3:79100767-79100786 None:intergenic 45.0%
GCAGGTTTGTCGGTGAAGTT+TGG + chr6_3:79095556-79095575 Msa0960070:five_prime_UTR 50.0%
CAAGGTAGCTATCGTAAGCC+AGG - chr6_3:79095665-79095684 None:intergenic 50.0%
! CCCCTTGGTGATTGGAATCA+AGG - chr6_3:79095683-79095702 None:intergenic 50.0%
AGGTTGGAATGACCAGTTCC+AGG - chr6_3:79095855-79095874 None:intergenic 50.0%
GGAACTGGTCATTCCAACCT+TGG + chr6_3:79095855-79095874 Msa0960070:CDS 50.0%
TGGTCATTCCAACCTTGGTC+CGG + chr6_3:79095860-79095879 Msa0960070:CDS 50.0%
GTAAATGACAAGGGTGAGGC+GGG - chr6_3:79096044-79096063 None:intergenic 50.0%
ACAGAGGAACCATCCATTGC+AGG - chr6_3:79096095-79096114 None:intergenic 50.0%
GCAGAATCAACAGAAGCTGC+AGG + chr6_3:79096160-79096179 Msa0960070:CDS 50.0%
AATCAACAGAAGCTGCAGGG+TGG + chr6_3:79096164-79096183 Msa0960070:CDS 50.0%
! CTTTTGCCTGCTTCTCAAGC+TGG + chr6_3:79096200-79096219 Msa0960070:CDS 50.0%
TGGCTCATCTTCGCACCAAA+CGG + chr6_3:79096220-79096239 Msa0960070:CDS 50.0%
CAAGTGCCTGGATCTTTCAC+GGG + chr6_3:79096248-79096267 Msa0960070:CDS 50.0%
CCCACCTGCTGAAAAAACGT+AGG + chr6_3:79096315-79096334 Msa0960070:CDS 50.0%
!!! GCCTACGTTTTTTCAGCAGG+TGG - chr6_3:79096319-79096338 None:intergenic 50.0%
!!! CCAGCCTACGTTTTTTCAGC+AGG - chr6_3:79096322-79096341 None:intergenic 50.0%
CCTGCTGAAAAAACGTAGGC+TGG + chr6_3:79096319-79096338 Msa0960070:CDS 50.0%
AATCTTTCAGTCGTTGCCCC+CGG + chr6_3:79096475-79096494 Msa0960070:CDS 50.0%
!! AAGATTTGTTGCTGAGCCGG+GGG - chr6_3:79096494-79096513 None:intergenic 50.0%
AAACTGCATTCGCTGAGCCT+GGG - chr6_3:79096528-79096547 None:intergenic 50.0%
ACAGCAAATGATGCAGCCCT+CGG + chr6_3:79096601-79096620 Msa0960070:CDS 50.0%
CCAACACCACCACCATCATA+CGG - chr6_3:79096641-79096660 None:intergenic 50.0%
!! TATGATGGTGGTGGTGTTGG+AGG + chr6_3:79096641-79096660 Msa0960070:CDS 50.0%
!! GAGGTACTGCATCAATCGAC+GGG - chr6_3:79096675-79096694 None:intergenic 50.0%
AACGTTGGACACCATTCAGC+TGG + chr6_3:79097064-79097083 Msa0960070:CDS 50.0%
GGGGTAAAACACCAGCTGAA+TGG - chr6_3:79097078-79097097 None:intergenic 50.0%
! TTCAGCTGGTGTTTTACCCC+AGG + chr6_3:79097078-79097097 Msa0960070:CDS 50.0%
AAACTGACCGTAGTTGCCTG+GGG - chr6_3:79097097-79097116 None:intergenic 50.0%
GCTTGGCAGTGTGACATATG+CGG + chr6_3:79097548-79097567 Msa0960070:CDS 50.0%
! CAGCTTCGTGTTGTTCGTGA+GGG + chr6_3:79097857-79097876 Msa0960070:CDS 50.0%
GGGCACGAATCTGGTACATT+TGG - chr6_3:79098390-79098409 None:intergenic 50.0%
CAGCGACAAAGAAAGACGAC+AGG - chr6_3:79098458-79098477 None:intergenic 50.0%
! GATCACAACGTTGGAGCACT+TGG + chr6_3:79099322-79099341 Msa0960070:CDS 50.0%
!! TTGCATTTGGAGCTTTGGGG+TGG - chr6_3:79099614-79099633 None:intergenic 50.0%
GAGATGGAACAGGCAGCAAA+TGG + chr6_3:79099643-79099662 Msa0960070:CDS 50.0%
GAACAGGCAGCAAATGGTCA+AGG + chr6_3:79099649-79099668 Msa0960070:CDS 50.0%
CTTCTCGATGAAGTGAGCCA+GGG - chr6_3:79099858-79099877 None:intergenic 50.0%
CTGGCTCACTTCATCGAGAA+GGG + chr6_3:79099857-79099876 Msa0960070:CDS 50.0%
AAGAAGCTGGTGAGGGATTC+TGG - chr6_3:79099903-79099922 None:intergenic 50.0%
CCTTGCAAAGAAGCTGGTGA+GGG - chr6_3:79099910-79099929 None:intergenic 50.0%
ACCTTGCAAAGAAGCTGGTG+AGG - chr6_3:79099911-79099930 None:intergenic 50.0%
! CAGCTTCTTTGCAAGGTGCT+GGG + chr6_3:79099914-79099933 Msa0960070:CDS 50.0%
!! AGCTTCTTTGCAAGGTGCTG+GGG + chr6_3:79099915-79099934 Msa0960070:CDS 50.0%
GGTGAATTCTGCATAGAGCC+TGG - chr6_3:79099952-79099971 None:intergenic 50.0%
TCACCTCACAACAGTAGTGG+TGG + chr6_3:79099967-79099986 Msa0960070:CDS 50.0%
TGCTGTAGTGAGGGTAGATG+GGG - chr6_3:79100003-79100022 None:intergenic 50.0%
CTGCTGTAGTGAGGGTAGAT+GGG - chr6_3:79100004-79100023 None:intergenic 50.0%
ATCTACCCTCACTACAGCAG+CGG + chr6_3:79100004-79100023 Msa0960070:CDS 50.0%
! AATGAGCGCTGTTGAAGGTG+TGG - chr6_3:79100048-79100067 None:intergenic 50.0%
AATCACTCTCAGGGACCTCA+AGG + chr6_3:79100093-79100112 Msa0960070:CDS 50.0%
GATGATCCAGCAACTACTGC+AGG + chr6_3:79100137-79100156 Msa0960070:CDS 50.0%
GGCCAAACTCCAACCACAAA+TGG + chr6_3:79100252-79100271 Msa0960070:CDS 50.0%
ACTCCAACCACAAATGGAGG+AGG + chr6_3:79100258-79100277 Msa0960070:CDS 50.0%
GCGACATATCAGATGTCCTC+TGG - chr6_3:79100398-79100417 None:intergenic 50.0%
! AAGCGCTGTCTGTGAAGTCA+GGG - chr6_3:79100458-79100477 None:intergenic 50.0%
!! AAAGCGCTGTCTGTGAAGTC+AGG - chr6_3:79100459-79100478 None:intergenic 50.0%
TTGAGTCAGTCATGGCTTCC+AGG - chr6_3:79100517-79100536 None:intergenic 50.0%
GTAGATTACACTTGCAGGCC+AGG - chr6_3:79100731-79100750 None:intergenic 50.0%
! AGGTATGCCCCCTTGGTGAT+TGG - chr6_3:79095691-79095710 None:intergenic 55.0%
TACCTCCCATGGCACCTTCT+CGG + chr6_3:79095706-79095725 Msa0960070:exon 55.0%
TCCAACCTTGGTCCGGTTTC+TGG + chr6_3:79095867-79095886 Msa0960070:CDS 55.0%
CCAACCTTGGTCCGGTTTCT+GGG + chr6_3:79095868-79095887 Msa0960070:CDS 55.0%
CAACCTTGGTCCGGTTTCTG+GGG + chr6_3:79095869-79095888 Msa0960070:CDS 55.0%
TATCCCCAGAAACCGGACCA+AGG - chr6_3:79095875-79095894 None:intergenic 55.0%
GCAAACTCAGCGCCAAGTGT+TGG + chr6_3:79095921-79095940 Msa0960070:CDS 55.0%
TCTGGGTCACCTGCAATGGA+TGG + chr6_3:79096083-79096102 Msa0960070:CDS 55.0%
GATGAGCCAGCTTGAGAAGC+AGG - chr6_3:79096209-79096228 None:intergenic 55.0%
GGCTCATCTTCGCACCAAAC+GGG + chr6_3:79096221-79096240 Msa0960070:CDS 55.0%
TGTGCACCCGTGAAAGATCC+AGG - chr6_3:79096257-79096276 None:intergenic 55.0%
AACTGCATTCGCTGAGCCTG+GGG - chr6_3:79096527-79096546 None:intergenic 55.0%
GAAACTGCATTCGCTGAGCC+TGG - chr6_3:79096529-79096548 None:intergenic 55.0%
! GAGGGCTGCATCATTTGCTG+TGG - chr6_3:79096602-79096621 None:intergenic 55.0%
! GGTGTGAAGCGTCCGTATGA+TGG + chr6_3:79096626-79096645 Msa0960070:CDS 55.0%
! GTGAAGCGTCCGTATGATGG+TGG + chr6_3:79096629-79096648 Msa0960070:CDS 55.0%
!! AAGCGTCCGTATGATGGTGG+TGG + chr6_3:79096632-79096651 Msa0960070:CDS 55.0%
!! CCGTATGATGGTGGTGGTGT+TGG + chr6_3:79096638-79096657 Msa0960070:CDS 55.0%
CTCCTCGTGCAAAGCAACGA+TGG + chr6_3:79097023-79097042 Msa0960070:CDS 55.0%
! CACCATCGTTGCTTTGCACG+AGG - chr6_3:79097028-79097047 None:intergenic 55.0%
! GCAGCTTCGTGTTGTTCGTG+AGG + chr6_3:79097856-79097875 Msa0960070:CDS 55.0%
GCGTCAGCTTGCGAAGAGTT+TGG + chr6_3:79099072-79099091 Msa0960070:CDS 55.0%
GGCAATCGTGGTGCTTTGAC+CGG + chr6_3:79099760-79099779 Msa0960070:CDS 55.0%
GCAATCGTGGTGCTTTGACC+GGG + chr6_3:79099761-79099780 Msa0960070:CDS 55.0%
CATAGCAGCTTGTGATGGCC+CGG - chr6_3:79099782-79099801 None:intergenic 55.0%
CCTTCTCGATGAAGTGAGCC+AGG - chr6_3:79099859-79099878 None:intergenic 55.0%
CCTGGCTCACTTCATCGAGA+AGG + chr6_3:79099856-79099875 Msa0960070:CDS 55.0%
CCCTCACCAGCTTCTTTGCA+AGG + chr6_3:79099907-79099926 Msa0960070:CDS 55.0%
CCAGCACCTTGCAAAGAAGC+TGG - chr6_3:79099916-79099935 None:intergenic 55.0%
CCAGCTTCTTTGCAAGGTGC+TGG + chr6_3:79099913-79099932 Msa0960070:CDS 55.0%
GCTGCTGTAGTGAGGGTAGA+TGG - chr6_3:79100005-79100024 None:intergenic 55.0%
GAGCCTCCTCCATTTGTGGT+TGG - chr6_3:79100264-79100283 None:intergenic 55.0%
AATGGAGGAGGCTCTGCCAA+TGG + chr6_3:79100270-79100289 Msa0960070:CDS 55.0%
AGTGACTCTTCTGCAGCAGC+TGG + chr6_3:79100348-79100367 Msa0960070:CDS 55.0%
AGCGCTGTCTGTGAAGTCAG+GGG - chr6_3:79100457-79100476 None:intergenic 55.0%
ACCTCCCATGGCACCTTCTC+GGG + chr6_3:79095707-79095726 Msa0960070:exon 60.0%
AAACCTCCTGCCACCCGAGA+AGG - chr6_3:79095723-79095742 None:intergenic 60.0%
CCCAGAAACCGGACCAAGGT+TGG - chr6_3:79095871-79095890 None:intergenic 60.0%
CAGGCACTTGTGCACCCGTT+TGG - chr6_3:79096238-79096257 None:intergenic 60.0%
CAAACGGGTGCACAAGTGCC+TGG + chr6_3:79096236-79096255 Msa0960070:CDS 60.0%
TTCACGGGTGCACAAGTGCC+TGG + chr6_3:79096263-79096282 Msa0960070:CDS 60.0%
CAAATGATGCAGCCCTCGGC+TGG + chr6_3:79096605-79096624 Msa0960070:CDS 60.0%
TGCACAAGGGTCCTGACTGC+TGG + chr6_3:79099049-79099068 Msa0960070:intron 60.0%
GCACAAGGGTCCTGACTGCT+GGG + chr6_3:79099050-79099069 Msa0960070:intron 60.0%
CGGGCCATCACAAGCTGCTA+TGG + chr6_3:79099780-79099799 Msa0960070:CDS 60.0%
GCTGGGGCTGCTATAATCCC+AGG + chr6_3:79099931-79099950 Msa0960070:CDS 60.0%
TGCTGCCGCTGCTGTAGTGA+GGG - chr6_3:79100012-79100031 None:intergenic 60.0%
GGCAGAGCCTCCTCCATTTG+TGG - chr6_3:79100268-79100287 None:intergenic 60.0%
GGAGGCTCTGCCAATGGTCA+AGG + chr6_3:79100276-79100295 Msa0960070:CDS 60.0%
GACTCTTCTGCAGCAGCTGG+TGG + chr6_3:79100351-79100370 Msa0960070:CDS 60.0%
TCTTCTGCAGCAGCTGGTGG+AGG + chr6_3:79100354-79100373 Msa0960070:CDS 60.0%
! CCATGGGAGGTATGCCCCCT+TGG - chr6_3:79095698-79095717 None:intergenic 65.0%
! CCAAGGGGGCATACCTCCCA+TGG + chr6_3:79095695-79095714 Msa0960070:exon 65.0%
!! ACCCGAGAAGGTGCCATGGG+AGG - chr6_3:79095711-79095730 None:intergenic 65.0%
TCCCATGGCACCTTCTCGGG+TGG + chr6_3:79095710-79095729 Msa0960070:exon 65.0%
!! GCCACCCGAGAAGGTGCCAT+GGG - chr6_3:79095714-79095733 None:intergenic 65.0%
!! TGCCACCCGAGAAGGTGCCA+TGG - chr6_3:79095715-79095734 None:intergenic 65.0%
ATGGCACCTTCTCGGGTGGC+AGG + chr6_3:79095714-79095733 Msa0960070:CDS 65.0%
GGACGCTTCACACCAGCCGA+GGG - chr6_3:79096620-79096639 None:intergenic 65.0%
CAAGCTGACGCCCAGCAGTC+AGG - chr6_3:79099063-79099082 None:intergenic 65.0%
CTGCTGCCGCTGCTGTAGTG+AGG - chr6_3:79100013-79100032 None:intergenic 65.0%
TCTGCAGCAGCTGGTGGAGG+CGG + chr6_3:79100357-79100376 Msa0960070:CDS 65.0%
GCTGGTGGAGGCGGCAACAA+TGG + chr6_3:79100366-79100385 Msa0960070:CDS 65.0%
GCACCTTCTCGGGTGGCAGG+AGG + chr6_3:79095717-79095736 Msa0960070:CDS 70.0%
CGGACGCTTCACACCAGCCG+AGG - chr6_3:79096621-79096640 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 79095473 79100850 79095473 ID=Msa0960070;Name=Msa0960070
chr6_3 mRNA 79095473 79100850 79095473 ID=Msa0960070-mRNA-1;Parent=Msa0960070;Name=Msa0960070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=241|1|1|1|1|1|9|323|894
chr6_3 exon 79095473 79096718 79095473 ID=Msa0960070-mRNA-1:exon:14027;Parent=Msa0960070-mRNA-1
chr6_3 exon 79096977 79097108 79096977 ID=Msa0960070-mRNA-1:exon:14028;Parent=Msa0960070-mRNA-1
chr6_3 exon 79097545 79097596 79097545 ID=Msa0960070-mRNA-1:exon:14029;Parent=Msa0960070-mRNA-1
chr6_3 exon 79097699 79097913 79097699 ID=Msa0960070-mRNA-1:exon:14030;Parent=Msa0960070-mRNA-1
chr6_3 exon 79098001 79098069 79098001 ID=Msa0960070-mRNA-1:exon:14031;Parent=Msa0960070-mRNA-1
chr6_3 exon 79098568 79098668 79098568 ID=Msa0960070-mRNA-1:exon:14032;Parent=Msa0960070-mRNA-1
chr6_3 exon 79099057 79099150 79099057 ID=Msa0960070-mRNA-1:exon:14033;Parent=Msa0960070-mRNA-1
chr6_3 exon 79099274 79099343 79099274 ID=Msa0960070-mRNA-1:exon:14034;Parent=Msa0960070-mRNA-1
chr6_3 exon 79099581 79100850 79099581 ID=Msa0960070-mRNA-1:exon:14035;Parent=Msa0960070-mRNA-1
chr6_3 five_prime_UTR 79095473 79095713 79095473 ID=Msa0960070-mRNA-1:five_prime_utr;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79095714 79096718 79095714 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79096977 79097108 79096977 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79097545 79097596 79097545 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79097699 79097913 79097699 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79098001 79098069 79098001 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79098568 79098668 79098568 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79099057 79099150 79099057 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79099274 79099343 79099274 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 CDS 79099581 79100527 79099581 ID=Msa0960070-mRNA-1:cds;Parent=Msa0960070-mRNA-1
chr6_3 three_prime_UTR 79100528 79100850 79100528 ID=Msa0960070-mRNA-1:three_prime_utr;Parent=Msa0960070-mRNA-1
Gene Sequence

>Msa0960070

ATGGCACCTTCTCGGGTGGCAGGAGGTTTAGCTCAATCATCATCAAGTTCTGGAATTTTCTTTCAAGGAGAGGGGCAGTCACATAATTTAGTTAACTCTCACTTGAGCTCGTCATTAGTTAACTCATCTAACACTATACCTGGAACTGGTCATTCCAACCTTGGTCCGGTTTCTGGGGATATGAATAACGGAATTTTGAACAGTGTGGCAAACTCAGCGCCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGAGCGCCATATGCAAAGAAGTGCAAGCATTAATGGAGATTCGTATTTAAGATTACCCGCCTCACCCTTGTCATTTACATCAAACAATATTAGTATTTCTGGGTCACCTGCAATGGATGGTTCCTCTGTAGTACAGCAGAATTCTCATCAAGATCAGAATGCTCAACAGTTGCAGCAGAATCAACAGAAGCTGCAGGGTGGTTCAAGTTCTATGCTTTTGCCTGCTTCTCAAGCTGGCTCATCTTCGCACCAAACGGGTGCACAAGTGCCTGGATCTTTCACGGGTGCACAAGTGCCTGGATCTTTCACTCAAGATCCAAATAATATATCCCACCTGCTGAAAAAACGTAGGCTGGATATCAAACAAGATGATATAATGCAACAGCAGGTAATACAGCAGCTTCTTCAGAGACAAGACCCCACACAATTCCAAAATCGTAATCCACAGTTACAGGCTATGTTTCAGCAACAGAGGCTGAAGCAACAACAAATCTTTCAGTCGTTGCCCCCGGCTCAGCAACAAATCTTTCAGTCATTACCCCAGGCTCAGCGAATGCAGTTTCTGCAGCAACAACAGCAGCAGCAACAACAGCAAATGCAGAGGCAGCAAATACCACAGCAAATGATGCAGCCCTCGGCTGGTGTGAAGCGTCCGTATGATGGTGGTGGTGTTGGAGGTGTATGTGCCCGTCGATTGATGCAGTACCTCTATCATCAAAGACAGCGACCAAATGATAATAGTATTGCATATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGCAACGATGGTGCTTAGCATTATATAGTAACGTTGGACACCATTCAGCTGGTGTTTTACCCCAGGCAACTACGCATGCTTGGCAGTGTGACATATGCGGAACTAAATCTGGAAGAAGGGGATTTGAGGCAACTTTTGATATACTACCCAGACTTAACGTAGTCAAATTTGGTGGTGGAGTGATCGATGAACTTTTGTTTTTGGACTTGCCGCGTGAAGTAAGATTTCCTTCTGGGTTGATGATGTTAGAATATACCAAAGCAGTTCAAGAGTGTGTGTATGAGCAGCTTCGTGTTGTTCGTGAGGGTCAACTTCGTATCGTATTTACTCAAGACCTAAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCACGAAGAACTTCTTCCTCGAAAGTTAGTTGCACCACAGGTCAACCAATTAGTTCAGGTTGCTCAAAAATGCCAGAGTACAATTTCTGAAAGTGGGTCAGATGGGGTCTCTCAGCAAGACTTGCAAACAAACAGTAACATGGTCCTGACTGCTGGGCGTCAGCTTGCGAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGATTTTCGAAAAGATTTGTTAGAACTTTGCAGATTTCTGAAGTTTGCAATAGCATGAAAGATCTAATCGATATATGTTTTGATCACAACGTTGGAGCACTTGAGAGTTTGAAAAATTATTCTCAATATTCAACCACCCCAAAGCTCCAAATGCAAAAGATGCAGGAGATGGAACAGGCAGCAAATGGTCAAGGACCCCCACCTGATCAAAACACACTTAATAAGCTGATGGCATTGAATCCTGGATCAAACAATCACATAAGCAATAGTAATCACAATATGGGCAATCGTGGTGCTTTGACCGGGCCATCACAAGCTGCTATGGCAATGTCCAATTACCAGAATCTTCTGATGAGGCAAAACTCAATGAATTCAAGCCCTGGCTCACTTCATCGAGAAGGGTCCCCTTTCAGTAACTCAAACCAGAATCCCTCACCAGCTTCTTTGCAAGGTGCTGGGGCTGCTATAATCCCAGGCTCTATGCAGAATTCACCTCACAACAGTAGTGGTGGATTCTCAAATCCCCATCTACCCTCACTACAGCAGCGGCAGCAGCAGCAGCAGCAACCACACCTTCAACAGCGCTCATTAAGTGCAAATAATTTACCTCAACAAAATCACTCTCAGGGACCTCAAGGAAACCAATCACTGCAACAGCAGATGATCCAGCAACTACTGCAGGATATGTCAAATAACAATGGGGGAGTACAACAACAGTCTCATAGTGGACCCAATGTAAGTGGGAATATGGCAAAGAATAATTTGGGTTTTGGGGGCCAAACTCCAACCACAAATGGAGGAGGCTCTGCCAATGGTCAAGGAAATAATGGACCTGTTTCAAGGAGTAACAGTTTCAAAGCAGCTTCAAACAGTGACTCTTCTGCAGCAGCTGGTGGAGGCGGCAACAATGGATTCAACCAGAGGACATCTGATATGTCGCAGAATCTAGCCTTACAAGACGTTGCTTCCGATTTTGCCCCTGACTTCACAGACAGCGCTTTCTTTAACAGTGATCTGGATGATAACATGGGTTTTACCTGGAAGCCATGA
Protein sequence

>Msa0960070

MAPSRVAGGLAQSSSSSGIFFQGEGQSHNLVNSHLSSSLVNSSNTIPGTGHSNLGPVSGDMNNGILNSVANSAPSVGASSLVTDANSALSGERHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAQQLQQNQQKLQGGSSSMLLPASQAGSSSHQTGAQVPGSFTGAQVPGSFTQDPNNISHLLKKRRLDIKQDDIMQQQVIQQLLQRQDPTQFQNRNPQLQAMFQQQRLKQQQIFQSLPPAQQQIFQSLPQAQRMQFLQQQQQQQQQQMQRQQIPQQMMQPSAGVKRPYDGGGVGGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKQRWCLALYSNVGHHSAGVLPQATTHAWQCDICGTKSGRRGFEATFDILPRLNVVKFGGGVIDELLFLDLPREVRFPSGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNSMKDLIDICFDHNVGALESLKNYSQYSTTPKLQMQKMQEMEQAANGQGPPPDQNTLNKLMALNPGSNNHISNSNHNMGNRGALTGPSQAAMAMSNYQNLLMRQNSMNSSPGSLHREGSPFSNSNQNPSPASLQGAGAAIIPGSMQNSPHNSSGGFSNPHLPSLQQRQQQQQQPHLQQRSLSANNLPQQNHSQGPQGNQSLQQQMIQQLLQDMSNNNGGVQQQSHSGPNVSGNMAKNNLGFGGQTPTTNGGGSANGQGNNGPVSRSNSFKAASNSDSSAAAGGGGNNGFNQRTSDMSQNLALQDVASDFAPDFTDSAFFNSDLDDNMGFTWKP*