AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0891920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891920 MtrunA17_Chr6g0473021 99.105 894 7 1 1 893 1 894 0.0 1784
Msa0891920 MtrunA17_Chr3g0125831 54.275 269 117 4 317 585 323 585 2.23e-100 333
Msa0891920 MtrunA17_Chr1g0159441 51.579 285 132 4 306 590 322 600 3.24e-98 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891920 AT5G62090.1 50.664 602 217 16 304 892 281 815 8.27e-178 535
Msa0891920 AT5G62090.2 50.664 602 217 16 304 892 281 815 8.27e-178 535
Msa0891920 AT5G62090.3 50.664 602 217 16 304 892 281 815 8.27e-178 535
Msa0891920 AT4G25515.1 47.044 795 301 19 95 883 1 681 1.22e-177 530
Msa0891920 AT4G25520.1 45.678 856 295 26 75 882 9 742 4.55e-177 530
Msa0891920 AT4G25520.2 45.678 856 295 26 75 882 9 742 4.55e-177 530
Msa0891920 AT1G43850.2 54.647 269 116 4 317 585 304 566 3.46e-94 317
Msa0891920 AT1G43850.1 54.647 269 116 4 317 585 304 566 3.46e-94 317

Find 245 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACCTTGGTCCGGTTTC+TGG 0.004417 6_1:-68570329 Msa0891920:CDS
GTAACTGTGGATTACGATTT+TGG 0.087200 6_1:+68569781 None:intergenic
TCAAACAATATTAGTATTTC+TGG 0.136306 6_1:-68570131 Msa0891920:CDS
AGCAGGTGGGATATATTATT+TGG 0.184102 6_1:+68569894 None:intergenic
GAATATGGCAAAGAATAATT+TGG 0.196446 6_1:-68565938 Msa0891920:CDS
CAAAGAAGTGCAAGCATTAA+TGG 0.207098 6_1:-68570197 Msa0891920:CDS
AAGAAGCTGGTGAGGGATTC+TGG 0.224369 6_1:+68566256 None:intergenic
GCAAAGAATAATTTGGGTTT+TGG 0.226566 6_1:-68565931 Msa0891920:CDS
ACTCAACTTGTCAGTGTAAT+TGG 0.226766 6_1:-68565628 Msa0891920:three_prime_UTR
CTCCATTTGTGGTTGGAGTT+TGG 0.238832 6_1:+68565905 None:intergenic
CATCAGAAGATTCTGGTAAT+TGG 0.243250 6_1:+68566347 None:intergenic
AGACTTAACGTAGTCAAATT+TGG 0.255462 6_1:-68568467 Msa0891920:CDS
TGCACAAGGGTCCTGACTGC+TGG 0.272148 6_1:-68567111 Msa0891920:intron
CCAGCTTCTTTGCAAGGTGC+TGG 0.274078 6_1:-68566243 Msa0891920:CDS
AAGCAATAGTAATCACAATA+TGG 0.277217 6_1:-68566418 Msa0891920:CDS
TTTGAGCAACCTGAACTAAT+TGG 0.280593 6_1:+68567586 None:intergenic
CCAACCTTGGTCCGGTTTCT+GGG 0.289752 6_1:-68570328 Msa0891920:CDS
CTCAATTTGTCTATTGTTTG+AGG 0.306265 6_1:-68570578 Msa0891920:five_prime_UTR
TTTGCCTCATCAGAAGATTC+TGG 0.314520 6_1:+68566340 None:intergenic
CAGCTTCTTTGCAAGGTGCT+GGG 0.325798 6_1:-68566242 Msa0891920:CDS
GCCAATGGTCAAGGAAATAA+TGG 0.328082 6_1:-68565874 Msa0891920:CDS
AAGATTTGTTAGAACTTTGC+AGG 0.331751 6_1:-68567031 Msa0891920:intron
AATATGGCAAAGAATAATTT+GGG 0.333666 6_1:-68565937 Msa0891920:CDS
CGCTTTCTTTAACAGTGATC+TGG 0.346150 6_1:-68565686 Msa0891920:CDS
TACTAGTAGATTACACTTGC+AGG 0.347743 6_1:+68565426 None:intergenic
CGTGAAGTAAGATTTCCTTC+TGG 0.348949 6_1:-68568404 Msa0891920:CDS
TCATCTGCTGTTGCAGTGAT+TGG 0.350351 6_1:+68566040 None:intergenic
AAATTTGACTACGTTAAGTC+TGG 0.354883 6_1:+68568469 None:intergenic
GTGAAGTAAGATTTCCTTCT+GGG 0.355713 6_1:-68568403 Msa0891920:CDS
AAAATCTCTAAAGCACCTAT+TGG 0.356672 6_1:+68565472 None:intergenic
TACCTCCCATGGCACCTTCT+CGG 0.358757 6_1:-68570490 Msa0891920:exon
GAAACTGCATTCGCTGAGCC+TGG 0.360815 6_1:+68569670 None:intergenic
GCTCAATCATCATCAAGTTC+TGG 0.361407 6_1:-68570452 Msa0891920:CDS
ACATATCCTGCAGTAGTTGC+TGG 0.363947 6_1:+68566016 None:intergenic
TTTGGAAATCTTAGAGAAAG+AGG 0.365537 6_1:-68570622 Msa0891920:five_prime_UTR
ACCCAATGTAAGTGGGAATA+TGG 0.366855 6_1:-68565953 Msa0891920:CDS
AAATCTGGAAGAAGGGGATT+TGG 0.370643 6_1:-68568614 Msa0891920:intron
GACATATGCGGAACTAAATC+TGG 0.370733 6_1:-68568629 Msa0891920:CDS
AAATCGTAATCCACAGTTAC+AGG 0.371291 6_1:-68569778 Msa0891920:CDS
GCAGGTTTGTCGGTGAAGTT+TGG 0.376597 6_1:-68570640 Msa0891920:five_prime_UTR
TGCTTGCACTTCTTTGCATA+TGG 0.377246 6_1:+68570204 None:intergenic
TGAAAGATTTGTTGCTGAGC+TGG 0.378129 6_1:+68569702 None:intergenic
GGCAATCGTGGTGCTTTGAC+CGG 0.380864 6_1:-68566396 Msa0891920:CDS
CACACACTCTTGAACTGCTT+TGG 0.381564 6_1:+68568361 None:intergenic
GGCAGAGCCTCCTCCATTTG+TGG 0.385110 6_1:+68565894 None:intergenic
ACAGGTCAACCAATTAGTTC+AGG 0.385319 6_1:-68567595 Msa0891920:intron
GCCATATTCCCACTTACATT+GGG 0.386693 6_1:+68565952 None:intergenic
GCGTCAGCTTGCGAAGAGTT+TGG 0.390189 6_1:-68567088 Msa0891920:CDS
ACCTCCCATGGCACCTTCTC+GGG 0.391943 6_1:-68570489 Msa0891920:exon
GCTGCTGTAGTGAGGGTAGA+TGG 0.399221 6_1:+68566154 None:intergenic
GATGAGCCAGCTTGAGAAGC+AGG 0.407901 6_1:+68569990 None:intergenic
CAGGCACTTGTGCACCCGTT+TGG 0.413768 6_1:+68569961 None:intergenic
TTGAGTCAGTCATGGCTTCC+AGG 0.414836 6_1:+68565645 None:intergenic
AAACTGTTACTCCTTGAAAC+AGG 0.415397 6_1:+68565850 None:intergenic
AAAGCGCTGTCTGTGAAGTC+AGG 0.416020 6_1:+68565703 None:intergenic
TGCCATATTCCCACTTACAT+TGG 0.423079 6_1:+68565951 None:intergenic
ACCTCAACAAAATAACTCTC+AGG 0.424286 6_1:-68566076 Msa0891920:CDS
GGCCAAACTCCAACCACAAA+TGG 0.432260 6_1:-68565907 Msa0891920:CDS
CACTTAATGAGCGCTGTTGA+AGG 0.436350 6_1:+68566109 None:intergenic
TTCACGGGTGCACAAGTGCC+TGG 0.440431 6_1:-68569933 Msa0891920:CDS
ACAGAGGAACCATCCATTGC+AGG 0.441574 6_1:+68570104 None:intergenic
TGTGAAGTCAGGGGCAAAAT+CGG 0.442003 6_1:+68565714 None:intergenic
ATTTGTTTCTTCAGCATGCT+TGG 0.442668 6_1:-68568658 Msa0891920:intron
ATGGCACCTTCTCGGGTGGC+AGG 0.443888 6_1:-68570482 Msa0891920:CDS
CCGTATGATGGTGGTGGTGT+TGG 0.444125 6_1:-68569558 Msa0891920:CDS
GGCTCATCTTCGCACCAAAC+GGG 0.445319 6_1:-68569975 Msa0891920:CDS
AGGATAATAGTATTGCATAT+TGG 0.445753 6_1:-68569221 Msa0891920:CDS
CTGCTGCCGCTGCTGTAGTG+AGG 0.446365 6_1:+68566146 None:intergenic
GTCATGACTCTTACTCCAAT+AGG 0.447795 6_1:-68565487 Msa0891920:three_prime_UTR
CCTTCTCGATGAAGTGAGCC+AGG 0.450422 6_1:+68566300 None:intergenic
TGGCTCATCTTCGCACCAAA+CGG 0.451424 6_1:-68569976 Msa0891920:CDS
CTTATGTGATTGTTTGATCC+AGG 0.451548 6_1:+68566438 None:intergenic
AGGTTGGAATGACCAGTTCC+AGG 0.452566 6_1:+68570344 None:intergenic
GACTCTTCTGCAGCAGCTGG+TGG 0.454343 6_1:-68565808 Msa0891920:CDS
CAAACAATATTAGTATTTCT+GGG 0.454378 6_1:-68570130 Msa0891920:CDS
AGCAATAGTAATCACAATAT+GGG 0.454584 6_1:-68566417 Msa0891920:CDS
ACGGAAGAGATATTGTTGTT+TGG 0.456283 6_1:-68565384 Msa0891920:three_prime_UTR
CGGGCCATCACAAGCTGCTA+TGG 0.456754 6_1:-68566376 Msa0891920:CDS
TCTTCTGCAGCAGCTGGTGG+AGG 0.457790 6_1:-68565805 Msa0891920:CDS
GAGAAAGAGGAGATACAGTC+AGG 0.458752 6_1:-68570609 Msa0891920:five_prime_UTR
CTGCTGTAGTGAGGGTAGAT+GGG 0.459396 6_1:+68566155 None:intergenic
CAGTGATCTGGATGATAACA+TGG 0.459525 6_1:-68565674 Msa0891920:CDS
AGGATATGTCAAATAACAAT+GGG 0.460590 6_1:-68566002 Msa0891920:CDS
AAGCTGATGGCATTGAATCC+TGG 0.462617 6_1:-68566456 Msa0891920:CDS
CCCCTTGGTGATTGGAATCA+AGG 0.464760 6_1:+68570516 None:intergenic
CGTATTTACTCAAGACCTAA+AGG 0.464821 6_1:-68568297 Msa0891920:intron
ATCGGAAGCAACGTCTTGTA+AGG 0.467151 6_1:+68565732 None:intergenic
GAAAGATTTGTTGCTGAGCT+GGG 0.468615 6_1:+68569703 None:intergenic
TTTCTTGGGATTTCTGTGTA+AGG 0.470095 6_1:-68568184 Msa0891920:CDS
GTCGCTGTCTTTGATGATAG+AGG 0.470148 6_1:+68569505 None:intergenic
GCACAAGGGTCCTGACTGCT+GGG 0.470817 6_1:-68567110 Msa0891920:intron
TGGTCATTCCAACCTTGGTC+CGG 0.471673 6_1:-68570336 Msa0891920:CDS
GAAATAATGGACCTGTTTCA+AGG 0.474603 6_1:-68565861 Msa0891920:CDS
CCCAGAAACCGGACCAAGGT+TGG 0.476077 6_1:+68570328 None:intergenic
GTAGATTACACTTGCAGGCC+AGG 0.476217 6_1:+68565431 None:intergenic
CAAACGGGTGCACAAGTGCC+TGG 0.476595 6_1:-68569960 Msa0891920:CDS
GATGCAAATTCTGCACTCTC+TGG 0.480557 6_1:-68570233 Msa0891920:CDS
AGCTTCTTTGCAAGGTGCTG+GGG 0.481337 6_1:-68566241 Msa0891920:CDS
TGCATATTGGAGAAAATTTG+TGG 0.481757 6_1:-68569208 Msa0891920:CDS
ACAAGTGCCTGGATCTTTCA+CGG 0.484466 6_1:-68569949 Msa0891920:CDS
CAAATGATGCAGCCCTCAGC+TGG 0.484505 6_1:-68569591 Msa0891920:CDS
TGCTGCCGCTGCTGTAGTGA+GGG 0.489285 6_1:+68566147 None:intergenic
TATTTCTGGGTCACCTGCAA+TGG 0.492304 6_1:-68570117 Msa0891920:CDS
AAAACTGACCGTAGTTGCCT+GGG 0.493407 6_1:+68569101 None:intergenic
GGTGAATTCTGCATAGAGCC+TGG 0.493626 6_1:+68566207 None:intergenic
TCCATTATTTCCTTGACCAT+TGG 0.493782 6_1:+68565873 None:intergenic
CGGAACTAAATCTGGAAGAA+GGG 0.496413 6_1:-68568621 Msa0891920:CDS
TCTGCAGCAGCTGGTGGAGG+CGG 0.500960 6_1:-68565802 Msa0891920:CDS
GCTGGTGGAGGCGGCAACAA+TGG 0.501813 6_1:-68565793 Msa0891920:CDS
GGATCTTGAGTGAAAGATCC+AGG 0.501934 6_1:+68569915 None:intergenic
TCTAACACTATACCTGGAAC+TGG 0.502243 6_1:-68570356 Msa0891920:CDS
GCGGAACTAAATCTGGAAGA+AGG 0.502603 6_1:-68568622 Msa0891920:CDS
GCAGAATCAACAGAAGCTGC+AGG 0.503705 6_1:-68570036 Msa0891920:CDS
CCCTCACCAGCTTCTTTGCA+AGG 0.504492 6_1:-68566249 Msa0891920:CDS
CAGAGTACAATTTCTGAAAG+TGG 0.504850 6_1:-68567558 Msa0891920:CDS
AAAGATGCAGGAGATGGAAC+AGG 0.505007 6_1:-68566523 Msa0891920:CDS
TTCGAGGAAGAAGTTCTTCG+TGG 0.507746 6_1:+68568159 None:intergenic
GAGCCTCCTCCATTTGTGGT+TGG 0.509004 6_1:+68565898 None:intergenic
TTATTCATATCCCCAGAAAC+CGG 0.509783 6_1:+68570317 None:intergenic
CCAGCACCTTGCAAAGAAGC+TGG 0.510142 6_1:+68566243 None:intergenic
TTTCTGAAAGTGGGTCAGAT+GGG 0.511298 6_1:-68567548 Msa0891920:CDS
CATAGTGGACCCAATGTAAG+TGG 0.512009 6_1:-68565961 Msa0891920:CDS
TCTGGGTCACCTGCAATGGA+TGG 0.512455 6_1:-68570113 Msa0891920:CDS
AAACTGCATTCGCTGAGCCT+GGG 0.515879 6_1:+68569671 None:intergenic
TGTGCACCCGTGAAAGATCC+AGG 0.516894 6_1:+68569942 None:intergenic
AATTATTTAGACTCAAAAGA+AGG 0.517001 6_1:-68565334 Msa0891920:three_prime_UTR
GTAAATGACAAGGGTGAGGC+GGG 0.517125 6_1:+68570155 None:intergenic
AGTGACTCTTCTGCAGCAGC+TGG 0.518460 6_1:-68565811 Msa0891920:CDS
GATCACAACGTTGGAGCACT+TGG 0.519657 6_1:-68566838 Msa0891920:intron
TCGAAAGTTAGTTGCACCAC+AGG 0.521019 6_1:-68568141 Msa0891920:intron
GCGACATATCAGATGTCCTC+TGG 0.526090 6_1:+68565764 None:intergenic
CATAGCAGCTTGTGATGGCC+CGG 0.526818 6_1:+68566377 None:intergenic
CAAGGTAGCTATCGTAAGCC+AGG 0.529043 6_1:+68570534 None:intergenic
TTCTGGTTTGAGTTACTGAA+AGG 0.529945 6_1:+68566273 None:intergenic
ATTTCTGAAAGTGGGTCAGA+TGG 0.531570 6_1:-68567549 Msa0891920:CDS
GATGATCCAGCAACTACTGC+AGG 0.531746 6_1:-68566022 Msa0891920:CDS
TGTGGTGCAACTAACTTTCG+AGG 0.533250 6_1:+68568143 None:intergenic
GCAATCGTGGTGCTTTGACC+GGG 0.534883 6_1:-68566395 Msa0891920:CDS
GCAAACTCAGCGCCAAGTGT+TGG 0.535607 6_1:-68570275 Msa0891920:CDS
AACTCAATGAATTCAAGCCC+TGG 0.537180 6_1:-68566318 Msa0891920:CDS
AATGCAAAAGATGCAGGAGA+TGG 0.538660 6_1:-68566529 Msa0891920:CDS
TATCTCTTCCGTGTGTTGCA+CGG 0.540165 6_1:+68565395 None:intergenic
TATGATGGTGGTGGTGTTGG+AGG 0.540568 6_1:-68569555 Msa0891920:CDS
GCTGGGGCTGCTATAATCCC+AGG 0.542056 6_1:-68566225 Msa0891920:CDS
GAGATGGAACAGGCAGCAAA+TGG 0.542386 6_1:-68566513 Msa0891920:CDS
AGCAACAACAGCAAATGCAG+AGG 0.545148 6_1:-68569629 Msa0891920:CDS
GGAACTGGTCATTCCAACCT+TGG 0.546176 6_1:-68570341 Msa0891920:CDS
GGGGTAAAACACCAGCTGAA+TGG 0.548295 6_1:+68569121 None:intergenic
GGAGGCTCTGCCAATGGTCA+AGG 0.550765 6_1:-68565883 Msa0891920:CDS
CACTTTCAGAAATTGTACTC+TGG 0.552295 6_1:+68567559 None:intergenic
AACTCATCTAACACTATACC+TGG 0.553687 6_1:-68570362 Msa0891920:CDS
GCACCTTCTCGGGTGGCAGG+AGG 0.555371 6_1:-68570479 Msa0891920:CDS
AGATGATATAATGCAACAGC+AGG 0.555604 6_1:-68569844 Msa0891920:CDS
AAACCTCCTGCCACCCGAGA+AGG 0.557804 6_1:+68570476 None:intergenic
GCTCCAAATGCAAAAGATGC+AGG 0.558369 6_1:-68566535 Msa0891920:CDS
CAGGATATGTCAAATAACAA+TGG 0.558761 6_1:-68566003 Msa0891920:CDS
GCTACAATCACTAAATGACT+TGG 0.559114 6_1:-68567064 Msa0891920:CDS
GCCACCCGAGAAGGTGCCAT+GGG 0.559219 6_1:+68570485 None:intergenic
CTGGCTCACTTCATCGAGAA+GGG 0.559974 6_1:-68566299 Msa0891920:CDS
TGCCACCCGAGAAGGTGCCA+TGG 0.561510 6_1:+68570484 None:intergenic
CTGGTTTGAGTTACTGAAAG+GGG 0.562385 6_1:+68566275 None:intergenic
AACGTTGGACACCATTCAGC+TGG 0.563736 6_1:-68569132 Msa0891920:CDS
AAAGATTTGTTGCTGAGCTG+GGG 0.565425 6_1:+68569704 None:intergenic
AAGCGCTGTCTGTGAAGTCA+GGG 0.568237 6_1:+68565704 None:intergenic
AGAGTACAATTTCTGAAAGT+GGG 0.568485 6_1:-68567557 Msa0891920:CDS
CAGCTTCGTGTTGTTCGTGA+GGG 0.569042 6_1:-68568332 Msa0891920:CDS
CCTGGCTCACTTCATCGAGA+AGG 0.569293 6_1:-68566300 Msa0891920:CDS
ACCTTGATTCCAATCACCAA+GGG 0.569360 6_1:-68570517 Msa0891920:five_prime_UTR
AACGTAGTCAAATTTGGTGG+TGG 0.570431 6_1:-68568461 Msa0891920:CDS
CAACCTTGGTCCGGTTTCTG+GGG 0.570652 6_1:-68570327 Msa0891920:CDS
TCTGGTTTGAGTTACTGAAA+GGG 0.570960 6_1:+68566274 None:intergenic
GGTGTGAAGCGTCCGTATGA+TGG 0.574656 6_1:-68569570 Msa0891920:CDS
CAAGTGCCTGGATCTTTCAC+GGG 0.575073 6_1:-68569948 Msa0891920:CDS
ACCCGAGAAGGTGCCATGGG+AGG 0.577327 6_1:+68570488 None:intergenic
GTGAATTCTGCATAGAGCCT+GGG 0.577345 6_1:+68566208 None:intergenic
TCCCATGGCACCTTCTCGGG+TGG 0.577436 6_1:-68570486 Msa0891920:exon
GTTTCTGGGGATATGAATAA+CGG 0.578565 6_1:-68570314 Msa0891920:CDS
ACCTTGCAAAGAAGCTGGTG+AGG 0.579868 6_1:+68566248 None:intergenic
CCAACACCACCACCATCATA+CGG 0.581250 6_1:+68569558 None:intergenic
CTACAATCACTAAATGACTT+GGG 0.582087 6_1:-68567063 Msa0891920:CDS
GCAGCTTCGTGTTGTTCGTG+AGG 0.582229 6_1:-68568333 Msa0891920:CDS
CTTAACGTAGTCAAATTTGG+TGG 0.585857 6_1:-68568464 Msa0891920:CDS
AATTTGACTACGTTAAGTCT+GGG 0.586300 6_1:+68568470 None:intergenic
AAAGAACTAGCTCCAACACT+TGG 0.586342 6_1:+68570263 None:intergenic
AAACACACTTAATAAGCTGA+TGG 0.587295 6_1:-68566469 Msa0891920:CDS
GAGGTACTGCATCAATCGAC+GGG 0.588234 6_1:+68569524 None:intergenic
CACCATCGTTGCTTTGCACG+AGG 0.589596 6_1:+68569171 None:intergenic
CTCCTCGTGCAAAGCAACGA+TGG 0.595692 6_1:-68569173 Msa0891920:CDS
AACTGCATTCGCTGAGCCTG+GGG 0.596330 6_1:+68569672 None:intergenic
AATGGAGGAGGCTCTGCCAA+TGG 0.596871 6_1:-68565889 Msa0891920:CDS
TTGCATTTGGAGCTTTGGGG+TGG 0.597799 6_1:+68566545 None:intergenic
TGCTGTAGTGAGGGTAGATG+GGG 0.597895 6_1:+68566156 None:intergenic
AATCTTTCAGTCATTACCCC+AGG 0.598170 6_1:-68569688 Msa0891920:CDS
CCTCAACAAAATAACTCTCA+GGG 0.599473 6_1:-68566075 Msa0891920:CDS
AATAACTCTCAGGGACCTCA+AGG 0.601021 6_1:-68566066 Msa0891920:CDS
GGACGCTTCACACCAGCTGA+GGG 0.602363 6_1:+68569579 None:intergenic
CGGACGCTTCACACCAGCTG+AGG 0.603211 6_1:+68569578 None:intergenic
GGAACTAAATCTGGAAGAAG+GGG 0.603444 6_1:-68568620 Msa0891920:CDS
TGCAGTGATTGGTTTCCTTG+AGG 0.604080 6_1:+68566051 None:intergenic
AGAGGTACTGCATCAATCGA+CGG 0.605840 6_1:+68569523 None:intergenic
CCTTGCAAAGAAGCTGGTGA+GGG 0.606576 6_1:+68566249 None:intergenic
TGTAAATGACAAGGGTGAGG+CGG 0.610200 6_1:+68570154 None:intergenic
TTCTGAAAGTGGGTCAGATG+GGG 0.619067 6_1:-68567547 Msa0891920:CDS
GAACAGGCAGCAAATGGTCA+AGG 0.623367 6_1:-68566507 Msa0891920:CDS
ATTGCCATAGCAGCTTGTGA+TGG 0.623500 6_1:+68566372 None:intergenic
TACCTTGATTCCAATCACCA+AGG 0.624295 6_1:-68570518 Msa0891920:five_prime_UTR
TCACCTCACAACAGTAGTGG+TGG 0.625883 6_1:-68566189 Msa0891920:CDS
AATCACAATATGGGCAATCG+TGG 0.626493 6_1:-68566408 Msa0891920:CDS
ATTACCAGAATCTTCTGATG+AGG 0.627608 6_1:-68566344 Msa0891920:CDS
AAGCGTCCGTATGATGGTGG+TGG 0.627811 6_1:-68569564 Msa0891920:CDS
GAGGGCTGCATCATTTGCTG+TGG 0.628092 6_1:+68569597 None:intergenic
GTACAACAACAGTCTCATAG+TGG 0.628238 6_1:-68565976 Msa0891920:CDS
TCTAACATCATCAACCCAGA+AGG 0.631328 6_1:+68568389 None:intergenic
CAGAATCAACAGAAGCTGCA+GGG 0.632025 6_1:-68570035 Msa0891920:CDS
AGAAAGAGGAGATACAGTCA+GGG 0.633773 6_1:-68570608 Msa0891920:five_prime_UTR
AAGATTTGTTGCTGAGCTGG+GGG 0.634024 6_1:+68569705 None:intergenic
CAAACTCCAACCACAAATGG+AGG 0.635025 6_1:-68565904 Msa0891920:CDS
AGGCTATGTTTCAGCAACAG+AGG 0.635240 6_1:-68569758 Msa0891920:CDS
ACTCCAACCACAAATGGAGG+AGG 0.636114 6_1:-68565901 Msa0891920:CDS
TTGTTTGATGTAAATGACAA+GGG 0.642823 6_1:+68570146 None:intergenic
CTTCTCGATGAAGTGAGCCA+GGG 0.649483 6_1:+68566301 None:intergenic
CTGACAAGTTGAGTCAGTCA+TGG 0.652838 6_1:+68565637 None:intergenic
TGAAACATAGCCTGTAACTG+TGG 0.653059 6_1:+68569768 None:intergenic
AATGAGCGCTGTTGAAGGTG+TGG 0.653128 6_1:+68566114 None:intergenic
ATAGTGGACCCAATGTAAGT+GGG 0.659740 6_1:-68565960 Msa0891920:CDS
TGATGTAAATGACAAGGGTG+AGG 0.659830 6_1:+68570151 None:intergenic
AATTCACCTCACAACAGTAG+TGG 0.664907 6_1:-68566192 Msa0891920:CDS
GTGAAGCGTCCGTATGATGG+TGG 0.666690 6_1:-68569567 Msa0891920:CDS
AGAATTCTGCTGTACTACAG+AGG 0.673615 6_1:+68570088 None:intergenic
GAAGGAAATCTTACTTCACG+CGG 0.674498 6_1:+68568407 None:intergenic
GCAACAATGGATTCAACCAG+AGG 0.677444 6_1:-68565780 Msa0891920:CDS
ATCTACCCTCACTACAGCAG+CGG 0.677886 6_1:-68566152 Msa0891920:CDS
ATTGTTTGATGTAAATGACA+AGG 0.683725 6_1:+68570145 None:intergenic
ACTATATTATCTCTGTACAG+TGG 0.684756 6_1:-68565580 Msa0891920:three_prime_UTR
TTAGCATTATATAGTAACGT+TGG 0.685696 6_1:-68569147 Msa0891920:CDS
AAACTGACCGTAGTTGCCTG+GGG 0.689698 6_1:+68569102 None:intergenic
GATATGTCAAATAACAATGG+GGG 0.690886 6_1:-68566000 Msa0891920:CDS
AGTGATCTGGATGATAACAT+GGG 0.697820 6_1:-68565673 Msa0891920:CDS
AGCGCTGTCTGTGAAGTCAG+GGG 0.701664 6_1:+68565705 None:intergenic
CCTTGATTCCAATCACCAAG+GGG 0.715028 6_1:-68570516 Msa0891920:five_prime_UTR
AATCCACCACTACTGTTGTG+AGG 0.715466 6_1:+68566186 None:intergenic
GGATATGTCAAATAACAATG+GGG 0.717595 6_1:-68566001 Msa0891920:CDS
AATCAACAGAAGCTGCAGGG+TGG 0.731716 6_1:-68570032 Msa0891920:CDS
GCTTGGCAGTGTGACATATG+CGG 0.756800 6_1:-68568641 Msa0891920:CDS
CTTGATTCCAATCACCAAGG+GGG 0.762416 6_1:-68570515 Msa0891920:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTCAAAAAAAAAAAAA+AGG + chr6_1:68569408-68569427 None:intergenic 10.0%
!!! ATAACATATTTTTAACGTTT+TGG - chr6_1:68566748-68566767 Msa0891920:intron 15.0%
!! TCTTTAATTCAAAGATTTAA+TGG - chr6_1:68567047-68567066 Msa0891920:CDS 15.0%
!! ATATAATTAATTGACTATGA+TGG + chr6_1:68568136-68568155 None:intergenic 15.0%
!! ATCATAGTCAATTAATTATA+TGG - chr6_1:68568135-68568154 Msa0891920:intron 15.0%
!!! TAATTATATGGTTAAACTTT+TGG - chr6_1:68568147-68568166 Msa0891920:CDS 15.0%
!!! AATTATATGGTTAAACTTTT+GGG - chr6_1:68568148-68568167 Msa0891920:CDS 15.0%
!! CAATTATATAGATATCATTA+TGG + chr6_1:68568380-68568399 None:intergenic 15.0%
!! CATAATGATATCTATATAAT+TGG - chr6_1:68568378-68568397 Msa0891920:CDS 15.0%
!!! TAATTTTTACCTTTTTTTAC+AGG - chr6_1:68568441-68568460 Msa0891920:CDS 15.0%
!!! AAAGTTTTATAACTTTTCTT+TGG + chr6_1:68568720-68568739 None:intergenic 15.0%
!! AAAGAAAAGTTATAAAACTT+TGG - chr6_1:68568719-68568738 Msa0891920:intron 15.0%
!!! AAATTATGGAAAATGAATTT+TGG + chr6_1:68569101-68569120 None:intergenic 15.0%
!! GGATTTGATTAAATAAATTA+TGG + chr6_1:68569115-68569134 None:intergenic 15.0%
!! ATCATTATCTTCATAAATAT+TGG - chr6_1:68569256-68569275 Msa0891920:intron 15.0%
!! AGTAAAACAAGAAAAATATA+AGG + chr6_1:68570519-68570538 None:intergenic 15.0%
!! TCAAACAATATTAGTATTTC+TGG - chr6_1:68565923-68565942 Msa0891920:CDS 20.0%
!! CAAACAATATTAGTATTTCT+GGG - chr6_1:68565924-68565943 Msa0891920:CDS 20.0%
!! CAAATAAAAAAACTGACATT+TGG + chr6_1:68566574-68566593 None:intergenic 20.0%
!!! GTATGATTCATTTTATTTAG+TGG - chr6_1:68567208-68567227 Msa0891920:intron 20.0%
!! AATCCTATAATTTATGAGTT+TGG + chr6_1:68567296-68567315 None:intergenic 20.0%
!! ACAGTAAATATAGTTAGATA+TGG + chr6_1:68567796-68567815 None:intergenic 20.0%
!! CTGTAAAAAACAGTAAAAAA+AGG + chr6_1:68568749-68568768 None:intergenic 20.0%
!! AAAAAAAAAAAAAGGAACAG+AGG + chr6_1:68569400-68569419 None:intergenic 20.0%
!! AATATGGCAAAGAATAATTT+GGG - chr6_1:68570117-68570136 Msa0891920:CDS 20.0%
!!! TTTTCTTGTTTTACTTTTTG+TGG - chr6_1:68570524-68570543 Msa0891920:five_prime_UTR 20.0%
!! AATTATTTAGACTCAAAAGA+AGG - chr6_1:68570720-68570739 Msa0891920:five_prime_UTR 20.0%
! TTGTTTGATGTAAATGACAA+GGG + chr6_1:68565911-68565930 None:intergenic 25.0%
! ATTGTTTGATGTAAATGACA+AGG + chr6_1:68565912-68565931 None:intergenic 25.0%
! CATAAACTAAAGAAATCATG+TGG + chr6_1:68566615-68566634 None:intergenic 25.0%
!! CACATGATTTCTTTAGTTTA+TGG - chr6_1:68566613-68566632 Msa0891920:intron 25.0%
!! CTTCTTTTAACATCTAGATT+AGG - chr6_1:68566774-68566793 Msa0891920:intron 25.0%
! AGGATAATAGTATTGCATAT+TGG - chr6_1:68566833-68566852 Msa0891920:intron 25.0%
! TTAGCATTATATAGTAACGT+TGG - chr6_1:68566907-68566926 Msa0891920:intron 25.0%
! TATTCATGGAATAACATACA+AGG + chr6_1:68566996-68567015 None:intergenic 25.0%
! TTGTATGTTATTCCATGAAT+AGG - chr6_1:68566995-68567014 Msa0891920:intron 25.0%
! TGTTATCATCATGTAATTGT+AGG - chr6_1:68567079-68567098 Msa0891920:CDS 25.0%
!! AAACAAGTGATAGCTTTTAT+GGG + chr6_1:68567236-68567255 None:intergenic 25.0%
! TTTCTATCTCTCTCATAAAT+GGG - chr6_1:68567253-68567272 Msa0891920:intron 25.0%
! AAGCCAAACTCATAAATTAT+AGG - chr6_1:68567290-68567309 Msa0891920:intron 25.0%
! TATAACATTATCGCACAAAA+GGG + chr6_1:68567513-68567532 None:intergenic 25.0%
! TTATACTAATATCTGCATTC+TGG - chr6_1:68567528-68567547 Msa0891920:CDS 25.0%
!! CAAATTATCAAGATTTTCAG+TGG + chr6_1:68567841-68567860 None:intergenic 25.0%
!!! AATTTGCTCAGATATTTTCT+TGG - chr6_1:68567855-68567874 Msa0891920:intron 25.0%
!! ATTTGCTCAGATATTTTCTT+GGG - chr6_1:68567856-68567875 Msa0891920:intron 25.0%
!!! ATGTTTTGAACAATCAAGAA+TGG + chr6_1:68568102-68568121 None:intergenic 25.0%
! AAAAGAAACTCCATCATTTA+GGG + chr6_1:68568279-68568298 None:intergenic 25.0%
!!! GAGTTTCTTTTGAAAATCTT+GGG - chr6_1:68568288-68568307 Msa0891920:intron 25.0%
!!! AGTTTCTTTTGAAAATCTTG+GGG - chr6_1:68568289-68568308 Msa0891920:intron 25.0%
! TAGATATCATTATGGAGTAA+GGG + chr6_1:68568372-68568391 None:intergenic 25.0%
! ATAGATATCATTATGGAGTA+AGG + chr6_1:68568373-68568392 None:intergenic 25.0%
!!! ATAGTGTAGAGGTATTATTT+TGG - chr6_1:68568405-68568424 Msa0891920:CDS 25.0%
!! AATGTGTTTGAAGTTATACA+TGG - chr6_1:68568796-68568815 Msa0891920:intron 25.0%
! TTATACATGGTCAACTAATA+AGG - chr6_1:68568809-68568828 Msa0891920:intron 25.0%
!! ATAATGTTTCTTTTGCACAA+GGG - chr6_1:68568930-68568949 Msa0891920:intron 25.0%
! TTATATTTCATAGTTTCTGC+AGG - chr6_1:68569058-68569077 Msa0891920:intron 25.0%
! TATATTTCATAGTTTCTGCA+GGG - chr6_1:68569059-68569078 Msa0891920:intron 25.0%
! ATCTGTAAAAACATAACAGA+AGG + chr6_1:68569150-68569169 None:intergenic 25.0%
!!! TTATTAAGTGTGTTTTGATC+AGG + chr6_1:68569580-68569599 None:intergenic 25.0%
! AAGCAATAGTAATCACAATA+TGG - chr6_1:68569636-68569655 Msa0891920:CDS 25.0%
! AGCAATAGTAATCACAATAT+GGG - chr6_1:68569637-68569656 Msa0891920:CDS 25.0%
! AGGATATGTCAAATAACAAT+GGG - chr6_1:68570052-68570071 Msa0891920:CDS 25.0%
! GAATATGGCAAAGAATAATT+TGG - chr6_1:68570116-68570135 Msa0891920:CDS 25.0%
!!! CAAAGAATAATTTGGGTTTT+GGG - chr6_1:68570124-68570143 Msa0891920:CDS 25.0%
!!! AAAGAATAATTTGGGTTTTG+GGG - chr6_1:68570125-68570144 Msa0891920:CDS 25.0%
!!! TGCTTTAGAGATTTTATTTG+AGG - chr6_1:68570590-68570609 Msa0891920:five_prime_UTR 25.0%
!!! GCTTTAGAGATTTTATTTGA+GGG - chr6_1:68570591-68570610 Msa0891920:five_prime_UTR 25.0%
TTTGGAAATCTTAGAGAAAG+AGG - chr6_1:68565432-68565451 Msa0891920:three_prime_UTR 30.0%
CTCAATTTGTCTATTGTTTG+AGG - chr6_1:68565476-68565495 Msa0891920:three_prime_UTR 30.0%
! TTTTAAACACTAGTTAAGCC+TGG - chr6_1:68565502-68565521 Msa0891920:three_prime_UTR 30.0%
!!! AGTTCTGGAATTTTCTTTCA+AGG - chr6_1:68565617-68565636 Msa0891920:three_prime_UTR 30.0%
!!! TTACGATTTTGGAATTGTGT+GGG + chr6_1:68566265-68566284 None:intergenic 30.0%
!!! ATTACGATTTTGGAATTGTG+TGG + chr6_1:68566266-68566285 None:intergenic 30.0%
! AGCAACAACCTTTTATGATT+TGG - chr6_1:68566636-68566655 Msa0891920:intron 30.0%
! GCAACAACCTTTTATGATTT+GGG - chr6_1:68566637-68566656 Msa0891920:intron 30.0%
! CAACAACCTTTTATGATTTG+GGG - chr6_1:68566638-68566657 Msa0891920:intron 30.0%
AAACATCCCCAAATCATAAA+AGG + chr6_1:68566647-68566666 None:intergenic 30.0%
! TTTTGTTGATCTGTTTTCTC+AGG - chr6_1:68566813-68566832 Msa0891920:intron 30.0%
TGCATATTGGAGAAAATTTG+TGG - chr6_1:68566846-68566865 Msa0891920:CDS 30.0%
ACAAATGGACAATAACTAGA+TGG + chr6_1:68567160-68567179 None:intergenic 30.0%
! GAAACAAGTGATAGCTTTTA+TGG + chr6_1:68567237-68567256 None:intergenic 30.0%
GTTTCTATCTCTCTCATAAA+TGG - chr6_1:68567252-68567271 Msa0891920:intron 30.0%
TTCTATCTCTCTCATAAATG+GGG - chr6_1:68567254-68567273 Msa0891920:intron 30.0%
TCTCATAAATGGGGAATAAA+TGG - chr6_1:68567263-68567282 Msa0891920:intron 30.0%
! GAAGTACCATGACAATAAAA+GGG + chr6_1:68567342-68567361 None:intergenic 30.0%
!! AGAAGTACCATGACAATAAA+AGG + chr6_1:68567343-68567362 None:intergenic 30.0%
TGCTGAAGAAACAAATATCA+AGG + chr6_1:68567392-68567411 None:intergenic 30.0%
GTATAACATTATCGCACAAA+AGG + chr6_1:68567514-68567533 None:intergenic 30.0%
AATTTGACTACGTTAAGTCT+GGG + chr6_1:68567587-68567606 None:intergenic 30.0%
AAATTTGACTACGTTAAGTC+TGG + chr6_1:68567588-68567607 None:intergenic 30.0%
AGACTTAACGTAGTCAAATT+TGG - chr6_1:68567587-68567606 Msa0891920:CDS 30.0%
!!! GATCGATGAACTTTTGTTTT+TGG - chr6_1:68567619-68567638 Msa0891920:intron 30.0%
AAAGAAACTCCATCATTTAG+GGG + chr6_1:68568278-68568297 None:intergenic 30.0%
CAAAAGAAACTCCATCATTT+AGG + chr6_1:68568280-68568299 None:intergenic 30.0%
!! GGAGTTTCTTTTGAAAATCT+TGG - chr6_1:68568287-68568306 Msa0891920:intron 30.0%
! TAATTGGAATGATAGTGTAG+AGG - chr6_1:68568394-68568413 Msa0891920:CDS 30.0%
!!! AGAGGTATTATTTTGGAATG+TGG - chr6_1:68568412-68568431 Msa0891920:CDS 30.0%
ATTGGTTGACCTGTAAAAAA+AGG + chr6_1:68568453-68568472 None:intergenic 30.0%
! AGAGTACAATTTCTGAAAGT+GGG - chr6_1:68568497-68568516 Msa0891920:intron 30.0%
!!! GTATAATGCTTCCTGTTTTT+TGG - chr6_1:68568674-68568693 Msa0891920:intron 30.0%
ATGGTCAACTAATAAGGATA+GGG - chr6_1:68568815-68568834 Msa0891920:intron 30.0%
!!! ATAATTTGTTTTCTTGAGCC+AGG - chr6_1:68568863-68568882 Msa0891920:intron 30.0%
AGTATTAATCTCTACAAACC+TGG + chr6_1:68568884-68568903 None:intergenic 30.0%
! GATAATGTTTCTTTTGCACA+AGG - chr6_1:68568929-68568948 Msa0891920:intron 30.0%
CTACAATCACTAAATGACTT+GGG - chr6_1:68568991-68569010 Msa0891920:intron 30.0%
!! AAGATTTGTTAGAACTTTGC+AGG - chr6_1:68569023-68569042 Msa0891920:intron 30.0%
!!! ATATGTTTTGATCACAACGT+TGG - chr6_1:68569207-68569226 Msa0891920:CDS 30.0%
ATTAATAAACACAGGAACAG+AGG + chr6_1:68569439-68569458 None:intergenic 30.0%
GTAGTAGGATTAATAAACAC+AGG + chr6_1:68569447-68569466 None:intergenic 30.0%
!! TAATTTTTCAAACTCTCTGC+AGG + chr6_1:68569475-68569494 None:intergenic 30.0%
AAACACACTTAATAAGCTGA+TGG - chr6_1:68569585-68569604 Msa0891920:CDS 30.0%
CAGGATATGTCAAATAACAA+TGG - chr6_1:68570051-68570070 Msa0891920:CDS 30.0%
GGATATGTCAAATAACAATG+GGG - chr6_1:68570053-68570072 Msa0891920:CDS 30.0%
GATATGTCAAATAACAATGG+GGG - chr6_1:68570054-68570073 Msa0891920:CDS 30.0%
!! GCAAAGAATAATTTGGGTTT+TGG - chr6_1:68570123-68570142 Msa0891920:CDS 30.0%
!! AAGAATAATTTGGGTTTTGG+GGG - chr6_1:68570126-68570145 Msa0891920:CDS 30.0%
ACTATATTATCTCTGTACAG+TGG - chr6_1:68570474-68570493 Msa0891920:CDS 30.0%
!! TTTTGTGGTCATTTTCTTGA+TGG - chr6_1:68570539-68570558 Msa0891920:five_prime_UTR 30.0%
!! AAAATCTCTAAAGCACCTAT+TGG + chr6_1:68570585-68570604 None:intergenic 30.0%
! TTGTTGTACATGTGTTTTGC+AGG - chr6_1:68565396-68565415 Msa0891920:three_prime_UTR 35.0%
! TGGAATTTTCTTTCAAGGAG+AGG - chr6_1:68565622-68565641 Msa0891920:three_prime_UTR 35.0%
! GGAATTTTCTTTCAAGGAGA+GGG - chr6_1:68565623-68565642 Msa0891920:three_prime_UTR 35.0%
! GAATTTTCTTTCAAGGAGAG+GGG - chr6_1:68565624-68565643 Msa0891920:three_prime_UTR 35.0%
AACTCATCTAACACTATACC+TGG - chr6_1:68565692-68565711 Msa0891920:CDS 35.0%
TTATTCATATCCCCAGAAAC+CGG + chr6_1:68565740-68565759 None:intergenic 35.0%
! GTTTCTGGGGATATGAATAA+CGG - chr6_1:68565740-68565759 Msa0891920:CDS 35.0%
! TAACGGAATTTTGAACAGTG+TGG - chr6_1:68565757-68565776 Msa0891920:CDS 35.0%
! CAAAGAAGTGCAAGCATTAA+TGG - chr6_1:68565857-68565876 Msa0891920:CDS 35.0%
AGCAGGTGGGATATATTATT+TGG + chr6_1:68566163-68566182 None:intergenic 35.0%
AGATGATATAATGCAACAGC+AGG - chr6_1:68566210-68566229 Msa0891920:CDS 35.0%
!!! TACGATTTTGGAATTGTGTG+GGG + chr6_1:68566264-68566283 None:intergenic 35.0%
!! GTAACTGTGGATTACGATTT+TGG + chr6_1:68566276-68566295 None:intergenic 35.0%
AAATCGTAATCCACAGTTAC+AGG - chr6_1:68566276-68566295 Msa0891920:CDS 35.0%
ACTAAAGAAATCATGTGGAC+AGG + chr6_1:68566610-68566629 None:intergenic 35.0%
CATCTAGATTAGGTACAACA+CGG - chr6_1:68566784-68566803 Msa0891920:intron 35.0%
TTGCAGTATCATCCTATTCA+TGG + chr6_1:68567010-68567029 None:intergenic 35.0%
AATTTACAGCTCTTGTCTAG+AGG + chr6_1:68567120-68567139 None:intergenic 35.0%
TGGTACTTCTGATTCTTTGA+AGG - chr6_1:68567353-68567372 Msa0891920:intron 35.0%
GGTACTTCTGATTCTTTGAA+GGG - chr6_1:68567354-68567373 Msa0891920:intron 35.0%
! ATTTGTTTCTTCAGCATGCT+TGG - chr6_1:68567396-68567415 Msa0891920:intron 35.0%
! ATTCTGGATTTGCTTAACAG+AGG - chr6_1:68567544-68567563 Msa0891920:CDS 35.0%
CTTAACGTAGTCAAATTTGG+TGG - chr6_1:68567590-68567609 Msa0891920:CDS 35.0%
GTGAAGTAAGATTTCCTTCT+GGG - chr6_1:68567651-68567670 Msa0891920:intron 35.0%
CGTATTTACTCAAGACCTAA+AGG - chr6_1:68567757-68567776 Msa0891920:intron 35.0%
GGTGAAGATCTATAACCTTT+AGG + chr6_1:68567775-68567794 None:intergenic 35.0%
TTTCTTGGGATTTCTGTGTA+AGG - chr6_1:68567870-68567889 Msa0891920:intron 35.0%
GAATCTTGTAGTGTAGCAAA+AGG + chr6_1:68568064-68568083 None:intergenic 35.0%
CAGTTCTTGAAATTTCCCAA+AGG - chr6_1:68568198-68568217 Msa0891920:intron 35.0%
GATAGAACTTTCACACCTTT+GGG + chr6_1:68568216-68568235 None:intergenic 35.0%
AAGTTCTATCCACTTTAACC+TGG - chr6_1:68568226-68568245 Msa0891920:intron 35.0%
AAGAAACTCCATCATTTAGG+GGG + chr6_1:68568277-68568296 None:intergenic 35.0%
CTTTGTCGCTGATAACTTTA+TGG - chr6_1:68568335-68568354 Msa0891920:CDS 35.0%
TTTGAGCAACCTGAACTAAT+TGG + chr6_1:68568471-68568490 None:intergenic 35.0%
CACTTTCAGAAATTGTACTC+TGG + chr6_1:68568498-68568517 None:intergenic 35.0%
! CAGAGTACAATTTCTGAAAG+TGG - chr6_1:68568496-68568515 Msa0891920:intron 35.0%
!! GTAACATGTAAGTTGATGCA+TGG - chr6_1:68568557-68568576 Msa0891920:intron 35.0%
CAACTCAATTGCCAAAAAAC+AGG + chr6_1:68568688-68568707 None:intergenic 35.0%
!!! CTGTTTTTTGGCAATTGAGT+TGG - chr6_1:68568686-68568705 Msa0891920:intron 35.0%
CATGGTCAACTAATAAGGAT+AGG - chr6_1:68568814-68568833 Msa0891920:intron 35.0%
TGGTCAACTAATAAGGATAG+GGG - chr6_1:68568816-68568835 Msa0891920:intron 35.0%
GCTACAATCACTAAATGACT+TGG - chr6_1:68568990-68569009 Msa0891920:intron 35.0%
AACAGAAGGCAGAGAAAAAA+AGG + chr6_1:68569136-68569155 None:intergenic 35.0%
AAAAAAGGAACAGAGGCTAA+TGG + chr6_1:68569393-68569412 None:intergenic 35.0%
!! TCTTTTGCATTTGGAGCTTT+GGG + chr6_1:68569516-68569535 None:intergenic 35.0%
!! ATCTTTTGCATTTGGAGCTT+TGG + chr6_1:68569517-68569536 None:intergenic 35.0%
!!! TAAGTGTGTTTTGATCAGGT+GGG + chr6_1:68569576-68569595 None:intergenic 35.0%
!!! TTAAGTGTGTTTTGATCAGG+TGG + chr6_1:68569577-68569596 None:intergenic 35.0%
CTTATGTGATTGTTTGATCC+AGG + chr6_1:68569619-68569638 None:intergenic 35.0%
CATCAGAAGATTCTGGTAAT+TGG + chr6_1:68569710-68569729 None:intergenic 35.0%
ATTACCAGAATCTTCTGATG+AGG - chr6_1:68569710-68569729 Msa0891920:CDS 35.0%
! TCTGGTTTGAGTTACTGAAA+GGG + chr6_1:68569783-68569802 None:intergenic 35.0%
!! TTCTGGTTTGAGTTACTGAA+AGG + chr6_1:68569784-68569803 None:intergenic 35.0%
ACCTCAACAAAATAACTCTC+AGG - chr6_1:68569978-68569997 Msa0891920:CDS 35.0%
CCTCAACAAAATAACTCTCA+GGG - chr6_1:68569979-68569998 Msa0891920:CDS 35.0%
TCCATTATTTCCTTGACCAT+TGG + chr6_1:68570184-68570203 None:intergenic 35.0%
!! GAAATAATGGACCTGTTTCA+AGG - chr6_1:68570193-68570212 Msa0891920:CDS 35.0%
AAACTGTTACTCCTTGAAAC+AGG + chr6_1:68570207-68570226 None:intergenic 35.0%
AGTGATCTGGATGATAACAT+GGG - chr6_1:68570381-68570400 Msa0891920:CDS 35.0%
! ATGATAACATGGGTTTTACC+TGG - chr6_1:68570391-68570410 Msa0891920:CDS 35.0%
ACTCAACTTGTCAGTGTAAT+TGG - chr6_1:68570426-68570445 Msa0891920:CDS 35.0%
!!! ATTTGAGGGTTGTTTTTTCC+TGG - chr6_1:68570605-68570624 Msa0891920:five_prime_UTR 35.0%
TACTAGTAGATTACACTTGC+AGG + chr6_1:68570631-68570650 None:intergenic 35.0%
! ACGGAAGAGATATTGTTGTT+TGG - chr6_1:68570670-68570689 Msa0891920:five_prime_UTR 35.0%
! CATGTGTTTTGCAGGTTTGT+CGG - chr6_1:68565404-68565423 Msa0891920:three_prime_UTR 40.0%
AGAAAGAGGAGATACAGTCA+GGG - chr6_1:68565446-68565465 Msa0891920:three_prime_UTR 40.0%
TACCTTGATTCCAATCACCA+AGG - chr6_1:68565536-68565555 Msa0891920:three_prime_UTR 40.0%
ACCTTGATTCCAATCACCAA+GGG - chr6_1:68565537-68565556 Msa0891920:three_prime_UTR 40.0%
GCTCAATCATCATCAAGTTC+TGG - chr6_1:68565602-68565621 Msa0891920:three_prime_UTR 40.0%
TCTAACACTATACCTGGAAC+TGG - chr6_1:68565698-68565717 Msa0891920:CDS 40.0%
AAAGAACTAGCTCCAACACT+TGG + chr6_1:68565794-68565813 None:intergenic 40.0%
TGCTTGCACTTCTTTGCATA+TGG + chr6_1:68565853-68565872 None:intergenic 40.0%
TGATGTAAATGACAAGGGTG+AGG + chr6_1:68565906-68565925 None:intergenic 40.0%
AGAATTCTGCTGTACTACAG+AGG + chr6_1:68565969-68565988 None:intergenic 40.0%
TGAAACATAGCCTGTAACTG+TGG + chr6_1:68566289-68566308 None:intergenic 40.0%
!! AAAGATTTGTTGCTGAGCTG+GGG + chr6_1:68566353-68566372 None:intergenic 40.0%
!! GAAAGATTTGTTGCTGAGCT+GGG + chr6_1:68566354-68566373 None:intergenic 40.0%
!! TGAAAGATTTGTTGCTGAGC+TGG + chr6_1:68566355-68566374 None:intergenic 40.0%
AATCTTTCAGTCATTACCCC+AGG - chr6_1:68566366-68566385 Msa0891920:CDS 40.0%
TTGTCCATTTGTGAGAGAGA+TGG - chr6_1:68567168-68567187 Msa0891920:intron 40.0%
! TCCTTGCCCTTTTATTGTCA+TGG - chr6_1:68567333-68567352 Msa0891920:intron 40.0%
ACCATGACAATAAAAGGGCA+AGG + chr6_1:68567337-68567356 None:intergenic 40.0%
GACATATGCGGAACTAAATC+TGG - chr6_1:68567425-68567444 Msa0891920:intron 40.0%
CGGAACTAAATCTGGAAGAA+GGG - chr6_1:68567433-68567452 Msa0891920:intron 40.0%
GGAACTAAATCTGGAAGAAG+GGG - chr6_1:68567434-68567453 Msa0891920:intron 40.0%
AAATCTGGAAGAAGGGGATT+TGG - chr6_1:68567440-68567459 Msa0891920:intron 40.0%
! AACGTAGTCAAATTTGGTGG+TGG - chr6_1:68567593-68567612 Msa0891920:CDS 40.0%
GAAGGAAATCTTACTTCACG+CGG + chr6_1:68567650-68567669 None:intergenic 40.0%
CGTGAAGTAAGATTTCCTTC+TGG - chr6_1:68567650-68567669 Msa0891920:intron 40.0%
TCTAACATCATCAACCCAGA+AGG + chr6_1:68567668-68567687 None:intergenic 40.0%
TATGATTCCGCATGCTATGT+TGG - chr6_1:68567938-68567957 Msa0891920:intron 40.0%
CTTAGATCCAACATAGCATG+CGG + chr6_1:68567948-68567967 None:intergenic 40.0%
GGATAGAACTTTCACACCTT+TGG + chr6_1:68568217-68568236 None:intergenic 40.0%
! TTGGTTCTTCCAGGTTAAAG+TGG + chr6_1:68568238-68568257 None:intergenic 40.0%
ACAGGTCAACCAATTAGTTC+AGG - chr6_1:68568459-68568478 Msa0891920:CDS 40.0%
! ATTTCTGAAAGTGGGTCAGA+TGG - chr6_1:68568505-68568524 Msa0891920:intron 40.0%
! TTTCTGAAAGTGGGTCAGAT+GGG - chr6_1:68568506-68568525 Msa0891920:intron 40.0%
AGATAGTGAATCTGAGGAAG+AGG + chr6_1:68568614-68568633 None:intergenic 40.0%
CAAGAGAGATAGTGAATCTG+AGG + chr6_1:68568620-68568639 None:intergenic 40.0%
! GCAGCTGTTTGAAATTACAC+AGG - chr6_1:68569280-68569299 Msa0891920:intron 40.0%
!! CTTTTGCATTTGGAGCTTTG+GGG + chr6_1:68569515-68569534 None:intergenic 40.0%
! TCTCCTGCATCTTTTGCATT+TGG + chr6_1:68569525-68569544 None:intergenic 40.0%
AATGCAAAAGATGCAGGAGA+TGG - chr6_1:68569525-68569544 Msa0891920:CDS 40.0%
!!! AAGTGTGTTTTGATCAGGTG+GGG + chr6_1:68569575-68569594 None:intergenic 40.0%
AATCACAATATGGGCAATCG+TGG - chr6_1:68569646-68569665 Msa0891920:CDS 40.0%
TTTGCCTCATCAGAAGATTC+TGG + chr6_1:68569717-68569736 None:intergenic 40.0%
AACTCAATGAATTCAAGCCC+TGG - chr6_1:68569736-68569755 Msa0891920:CDS 40.0%
! CTGGTTTGAGTTACTGAAAG+GGG + chr6_1:68569782-68569801 None:intergenic 40.0%
AATTCACCTCACAACAGTAG+TGG - chr6_1:68569862-68569881 Msa0891920:CDS 40.0%
!! CCCTGAGAGTTATTTTGTTG+AGG + chr6_1:68569982-68570001 None:intergenic 40.0%
GTACAACAACAGTCTCATAG+TGG - chr6_1:68570078-68570097 Msa0891920:CDS 40.0%
!! ATAGTGGACCCAATGTAAGT+GGG - chr6_1:68570094-68570113 Msa0891920:CDS 40.0%
ACCCAATGTAAGTGGGAATA+TGG - chr6_1:68570101-68570120 Msa0891920:CDS 40.0%
GCCATATTCCCACTTACATT+GGG + chr6_1:68570105-68570124 None:intergenic 40.0%
TGCCATATTCCCACTTACAT+TGG + chr6_1:68570106-68570125 None:intergenic 40.0%
GCCAATGGTCAAGGAAATAA+TGG - chr6_1:68570180-68570199 Msa0891920:CDS 40.0%
CGCTTTCTTTAACAGTGATC+TGG - chr6_1:68570368-68570387 Msa0891920:CDS 40.0%
CAGTGATCTGGATGATAACA+TGG - chr6_1:68570380-68570399 Msa0891920:CDS 40.0%
GTCATGACTCTTACTCCAAT+AGG - chr6_1:68570567-68570586 Msa0891920:five_prime_UTR 40.0%
! CTTTTAATCCGTGCAACACA+CGG - chr6_1:68570651-68570670 Msa0891920:five_prime_UTR 40.0%
GAGAAAGAGGAGATACAGTC+AGG - chr6_1:68565445-68565464 Msa0891920:three_prime_UTR 45.0%
CCTTGATTCCAATCACCAAG+GGG - chr6_1:68565538-68565557 Msa0891920:three_prime_UTR 45.0%
CTTGATTCCAATCACCAAGG+GGG - chr6_1:68565539-68565558 Msa0891920:three_prime_UTR 45.0%
GATGCAAATTCTGCACTCTC+TGG - chr6_1:68565821-68565840 Msa0891920:CDS 45.0%
TGTAAATGACAAGGGTGAGG+CGG + chr6_1:68565903-68565922 None:intergenic 45.0%
!! TATTTCTGGGTCACCTGCAA+TGG - chr6_1:68565937-68565956 Msa0891920:CDS 45.0%
CAGAATCAACAGAAGCTGCA+GGG - chr6_1:68566019-68566038 Msa0891920:CDS 45.0%
ACAAGTGCCTGGATCTTTCA+CGG - chr6_1:68566105-68566124 Msa0891920:CDS 45.0%
GGATCTTGAGTGAAAGATCC+AGG + chr6_1:68566142-68566161 None:intergenic 45.0%
!!! CCTACGTTTTTTCAGCAGGT+GGG + chr6_1:68566176-68566195 None:intergenic 45.0%
AGGCTATGTTTCAGCAACAG+AGG - chr6_1:68566296-68566315 Msa0891920:CDS 45.0%
!! AAGATTTGTTGCTGAGCTGG+GGG + chr6_1:68566352-68566371 None:intergenic 45.0%
AGCAACAACAGCAAATGCAG+AGG - chr6_1:68566425-68566444 Msa0891920:CDS 45.0%
!! AGAGGTACTGCATCAATCGA+CGG + chr6_1:68566534-68566553 None:intergenic 45.0%
! GTCGCTGTCTTTGATGATAG+AGG + chr6_1:68566552-68566571 None:intergenic 45.0%
! TGTTTTACCCCAGGCAACTA+CGG - chr6_1:68566945-68566964 Msa0891920:intron 45.0%
AAAACTGACCGTAGTTGCCT+GGG + chr6_1:68566956-68566975 None:intergenic 45.0%
AAAAACTGACCGTAGTTGCC+TGG + chr6_1:68566957-68566976 None:intergenic 45.0%
GTGTCCATCTCTCTCACAAA+TGG + chr6_1:68567175-68567194 None:intergenic 45.0%
GCGGAACTAAATCTGGAAGA+AGG - chr6_1:68567432-68567451 Msa0891920:intron 45.0%
! TGGAAGAAGGGGATTTGGTA+TGG - chr6_1:68567445-68567464 Msa0891920:intron 45.0%
CACACACTCTTGAACTGCTT+TGG + chr6_1:68567696-68567715 None:intergenic 45.0%
TTCGAGGAAGAAGTTCTTCG+TGG + chr6_1:68567898-68567917 None:intergenic 45.0%
TGTGGTGCAACTAACTTTCG+AGG + chr6_1:68567914-68567933 None:intergenic 45.0%
TCGAAAGTTAGTTGCACCAC+AGG - chr6_1:68567913-68567932 Msa0891920:intron 45.0%
CATGCGGAATCATATACCTG+TGG + chr6_1:68567932-68567951 None:intergenic 45.0%
GCACAAAGACACACAGAATG+TGG + chr6_1:68568016-68568035 None:intergenic 45.0%
!! CTGGTACATTTGGTTCTTCC+AGG + chr6_1:68568247-68568266 None:intergenic 45.0%
AAAGACGACAGGTTACTCAG+TGG + chr6_1:68568315-68568334 None:intergenic 45.0%
! TTCTGAAAGTGGGTCAGATG+GGG - chr6_1:68568507-68568526 Msa0891920:intron 45.0%
TCTCTGCAGGCAAATGTAGT+AGG + chr6_1:68569462-68569481 None:intergenic 45.0%
GCTCCAAATGCAAAAGATGC+AGG - chr6_1:68569519-68569538 Msa0891920:CDS 45.0%
AAAGATGCAGGAGATGGAAC+AGG - chr6_1:68569531-68569550 Msa0891920:CDS 45.0%
!!! AGTGTGTTTTGATCAGGTGG+GGG + chr6_1:68569574-68569593 None:intergenic 45.0%
! AAGCTGATGGCATTGAATCC+TGG - chr6_1:68569598-68569617 Msa0891920:CDS 45.0%
ATTGCCATAGCAGCTTGTGA+TGG + chr6_1:68569685-68569704 None:intergenic 45.0%
GTGAATTCTGCATAGAGCCT+GGG + chr6_1:68569849-68569868 None:intergenic 45.0%
AATCCACCACTACTGTTGTG+AGG + chr6_1:68569871-68569890 None:intergenic 45.0%
! CACTTAATGAGCGCTGTTGA+AGG + chr6_1:68569948-68569967 None:intergenic 45.0%
AATAACTCTCAGGGACCTCA+AGG - chr6_1:68569988-68570007 Msa0891920:CDS 45.0%
!! TGCAGTGATTGGTTTCCTTG+AGG + chr6_1:68570006-68570025 None:intergenic 45.0%
TCATCTGCTGTTGCAGTGAT+TGG + chr6_1:68570017-68570036 None:intergenic 45.0%
ACATATCCTGCAGTAGTTGC+TGG + chr6_1:68570041-68570060 None:intergenic 45.0%
!! CATAGTGGACCCAATGTAAG+TGG - chr6_1:68570093-68570112 Msa0891920:CDS 45.0%
CTCCATTTGTGGTTGGAGTT+TGG + chr6_1:68570152-68570171 None:intergenic 45.0%
CAAACTCCAACCACAAATGG+AGG - chr6_1:68570150-68570169 Msa0891920:CDS 45.0%
! GCAACAATGGATTCAACCAG+AGG - chr6_1:68570274-68570293 Msa0891920:CDS 45.0%
ATCGGAAGCAACGTCTTGTA+AGG + chr6_1:68570325-68570344 None:intergenic 45.0%
TGTGAAGTCAGGGGCAAAAT+CGG + chr6_1:68570343-68570362 None:intergenic 45.0%
! CTGACAAGTTGAGTCAGTCA+TGG + chr6_1:68570420-68570439 None:intergenic 45.0%
TATCTCTTCCGTGTGTTGCA+CGG + chr6_1:68570662-68570681 None:intergenic 45.0%
GCAGGTTTGTCGGTGAAGTT+TGG - chr6_1:68565414-68565433 Msa0891920:three_prime_UTR 50.0%
CAAGGTAGCTATCGTAAGCC+AGG + chr6_1:68565523-68565542 None:intergenic 50.0%
! CCCCTTGGTGATTGGAATCA+AGG + chr6_1:68565541-68565560 None:intergenic 50.0%
AGGTTGGAATGACCAGTTCC+AGG + chr6_1:68565713-68565732 None:intergenic 50.0%
GGAACTGGTCATTCCAACCT+TGG - chr6_1:68565713-68565732 Msa0891920:CDS 50.0%
TGGTCATTCCAACCTTGGTC+CGG - chr6_1:68565718-68565737 Msa0891920:CDS 50.0%
GTAAATGACAAGGGTGAGGC+GGG + chr6_1:68565902-68565921 None:intergenic 50.0%
ACAGAGGAACCATCCATTGC+AGG + chr6_1:68565953-68565972 None:intergenic 50.0%
GCAGAATCAACAGAAGCTGC+AGG - chr6_1:68566018-68566037 Msa0891920:CDS 50.0%
AATCAACAGAAGCTGCAGGG+TGG - chr6_1:68566022-68566041 Msa0891920:CDS 50.0%
! CTTTTGCCTGCTTCTCAAGC+TGG - chr6_1:68566058-68566077 Msa0891920:CDS 50.0%
TGGCTCATCTTCGCACCAAA+CGG - chr6_1:68566078-68566097 Msa0891920:CDS 50.0%
CAAGTGCCTGGATCTTTCAC+GGG - chr6_1:68566106-68566125 Msa0891920:CDS 50.0%
CCCACCTGCTGAAAAAACGT+AGG - chr6_1:68566173-68566192 Msa0891920:CDS 50.0%
!!! GCCTACGTTTTTTCAGCAGG+TGG + chr6_1:68566177-68566196 None:intergenic 50.0%
!!! CCAGCCTACGTTTTTTCAGC+AGG + chr6_1:68566180-68566199 None:intergenic 50.0%
CCTGCTGAAAAAACGTAGGC+TGG - chr6_1:68566177-68566196 Msa0891920:CDS 50.0%
AAACTGCATTCGCTGAGCCT+GGG + chr6_1:68566386-68566405 None:intergenic 50.0%
CCAACACCACCACCATCATA+CGG + chr6_1:68566499-68566518 None:intergenic 50.0%
!! TATGATGGTGGTGGTGTTGG+AGG - chr6_1:68566499-68566518 Msa0891920:CDS 50.0%
!! GAGGTACTGCATCAATCGAC+GGG + chr6_1:68566533-68566552 None:intergenic 50.0%
AACGTTGGACACCATTCAGC+TGG - chr6_1:68566922-68566941 Msa0891920:intron 50.0%
GGGGTAAAACACCAGCTGAA+TGG + chr6_1:68566936-68566955 None:intergenic 50.0%
! TTCAGCTGGTGTTTTACCCC+AGG - chr6_1:68566936-68566955 Msa0891920:intron 50.0%
AAACTGACCGTAGTTGCCTG+GGG + chr6_1:68566955-68566974 None:intergenic 50.0%
GCTTGGCAGTGTGACATATG+CGG - chr6_1:68567413-68567432 Msa0891920:intron 50.0%
! CAGCTTCGTGTTGTTCGTGA+GGG - chr6_1:68567722-68567741 Msa0891920:intron 50.0%
GGGCACGAATCTGGTACATT+TGG + chr6_1:68568257-68568276 None:intergenic 50.0%
! TCATTTAGGGGGCACGAATC+TGG + chr6_1:68568266-68568285 None:intergenic 50.0%
GATTCGTGCCCCCTAAATGA+TGG - chr6_1:68568266-68568285 Msa0891920:intron 50.0%
CAGCGACAAAGAAAGACGAC+AGG + chr6_1:68568326-68568345 None:intergenic 50.0%
! GATCACAACGTTGGAGCACT+TGG - chr6_1:68569216-68569235 Msa0891920:CDS 50.0%
!! TTGCATTTGGAGCTTTGGGG+TGG + chr6_1:68569512-68569531 None:intergenic 50.0%
GAGATGGAACAGGCAGCAAA+TGG - chr6_1:68569541-68569560 Msa0891920:CDS 50.0%
GAACAGGCAGCAAATGGTCA+AGG - chr6_1:68569547-68569566 Msa0891920:CDS 50.0%
CTTCTCGATGAAGTGAGCCA+GGG + chr6_1:68569756-68569775 None:intergenic 50.0%
CTGGCTCACTTCATCGAGAA+GGG - chr6_1:68569755-68569774 Msa0891920:CDS 50.0%
AAGAAGCTGGTGAGGGATTC+TGG + chr6_1:68569801-68569820 None:intergenic 50.0%
CCTTGCAAAGAAGCTGGTGA+GGG + chr6_1:68569808-68569827 None:intergenic 50.0%
ACCTTGCAAAGAAGCTGGTG+AGG + chr6_1:68569809-68569828 None:intergenic 50.0%
! CAGCTTCTTTGCAAGGTGCT+GGG - chr6_1:68569812-68569831 Msa0891920:CDS 50.0%
!! AGCTTCTTTGCAAGGTGCTG+GGG - chr6_1:68569813-68569832 Msa0891920:CDS 50.0%
GGTGAATTCTGCATAGAGCC+TGG + chr6_1:68569850-68569869 None:intergenic 50.0%
TCACCTCACAACAGTAGTGG+TGG - chr6_1:68569865-68569884 Msa0891920:CDS 50.0%
TGCTGTAGTGAGGGTAGATG+GGG + chr6_1:68569901-68569920 None:intergenic 50.0%
CTGCTGTAGTGAGGGTAGAT+GGG + chr6_1:68569902-68569921 None:intergenic 50.0%
ATCTACCCTCACTACAGCAG+CGG - chr6_1:68569902-68569921 Msa0891920:CDS 50.0%
! AATGAGCGCTGTTGAAGGTG+TGG + chr6_1:68569943-68569962 None:intergenic 50.0%
GATGATCCAGCAACTACTGC+AGG - chr6_1:68570032-68570051 Msa0891920:CDS 50.0%
GGCCAAACTCCAACCACAAA+TGG - chr6_1:68570147-68570166 Msa0891920:CDS 50.0%
ACTCCAACCACAAATGGAGG+AGG - chr6_1:68570153-68570172 Msa0891920:CDS 50.0%
GCGACATATCAGATGTCCTC+TGG + chr6_1:68570293-68570312 None:intergenic 50.0%
! AAGCGCTGTCTGTGAAGTCA+GGG + chr6_1:68570353-68570372 None:intergenic 50.0%
!! AAAGCGCTGTCTGTGAAGTC+AGG + chr6_1:68570354-68570373 None:intergenic 50.0%
TTGAGTCAGTCATGGCTTCC+AGG + chr6_1:68570412-68570431 None:intergenic 50.0%
GTAGATTACACTTGCAGGCC+AGG + chr6_1:68570626-68570645 None:intergenic 50.0%
! AGGTATGCCCCCTTGGTGAT+TGG + chr6_1:68565549-68565568 None:intergenic 55.0%
TACCTCCCATGGCACCTTCT+CGG - chr6_1:68565564-68565583 Msa0891920:three_prime_UTR 55.0%
TCCAACCTTGGTCCGGTTTC+TGG - chr6_1:68565725-68565744 Msa0891920:CDS 55.0%
CCAACCTTGGTCCGGTTTCT+GGG - chr6_1:68565726-68565745 Msa0891920:CDS 55.0%
CAACCTTGGTCCGGTTTCTG+GGG - chr6_1:68565727-68565746 Msa0891920:CDS 55.0%
TATCCCCAGAAACCGGACCA+AGG + chr6_1:68565733-68565752 None:intergenic 55.0%
GCAAACTCAGCGCCAAGTGT+TGG - chr6_1:68565779-68565798 Msa0891920:CDS 55.0%
TCTGGGTCACCTGCAATGGA+TGG - chr6_1:68565941-68565960 Msa0891920:CDS 55.0%
GATGAGCCAGCTTGAGAAGC+AGG + chr6_1:68566067-68566086 None:intergenic 55.0%
GGCTCATCTTCGCACCAAAC+GGG - chr6_1:68566079-68566098 Msa0891920:CDS 55.0%
TGTGCACCCGTGAAAGATCC+AGG + chr6_1:68566115-68566134 None:intergenic 55.0%
AACTGCATTCGCTGAGCCTG+GGG + chr6_1:68566385-68566404 None:intergenic 55.0%
GAAACTGCATTCGCTGAGCC+TGG + chr6_1:68566387-68566406 None:intergenic 55.0%
! GAGGGCTGCATCATTTGCTG+TGG + chr6_1:68566460-68566479 None:intergenic 55.0%
CAAATGATGCAGCCCTCAGC+TGG - chr6_1:68566463-68566482 Msa0891920:CDS 55.0%
! GGTGTGAAGCGTCCGTATGA+TGG - chr6_1:68566484-68566503 Msa0891920:CDS 55.0%
! GTGAAGCGTCCGTATGATGG+TGG - chr6_1:68566487-68566506 Msa0891920:CDS 55.0%
!! AAGCGTCCGTATGATGGTGG+TGG - chr6_1:68566490-68566509 Msa0891920:CDS 55.0%
!! CCGTATGATGGTGGTGGTGT+TGG - chr6_1:68566496-68566515 Msa0891920:CDS 55.0%
CTCCTCGTGCAAAGCAACGA+TGG - chr6_1:68566881-68566900 Msa0891920:CDS 55.0%
! CACCATCGTTGCTTTGCACG+AGG + chr6_1:68566886-68566905 None:intergenic 55.0%
! GCAGCTTCGTGTTGTTCGTG+AGG - chr6_1:68567721-68567740 Msa0891920:intron 55.0%
GCGTCAGCTTGCGAAGAGTT+TGG - chr6_1:68568966-68568985 Msa0891920:intron 55.0%
GGCAATCGTGGTGCTTTGAC+CGG - chr6_1:68569658-68569677 Msa0891920:CDS 55.0%
GCAATCGTGGTGCTTTGACC+GGG - chr6_1:68569659-68569678 Msa0891920:CDS 55.0%
CATAGCAGCTTGTGATGGCC+CGG + chr6_1:68569680-68569699 None:intergenic 55.0%
CCTTCTCGATGAAGTGAGCC+AGG + chr6_1:68569757-68569776 None:intergenic 55.0%
CCTGGCTCACTTCATCGAGA+AGG - chr6_1:68569754-68569773 Msa0891920:CDS 55.0%
CCCTCACCAGCTTCTTTGCA+AGG - chr6_1:68569805-68569824 Msa0891920:CDS 55.0%
CCAGCACCTTGCAAAGAAGC+TGG + chr6_1:68569814-68569833 None:intergenic 55.0%
CCAGCTTCTTTGCAAGGTGC+TGG - chr6_1:68569811-68569830 Msa0891920:CDS 55.0%
GCTGCTGTAGTGAGGGTAGA+TGG + chr6_1:68569903-68569922 None:intergenic 55.0%
GAGCCTCCTCCATTTGTGGT+TGG + chr6_1:68570159-68570178 None:intergenic 55.0%
AATGGAGGAGGCTCTGCCAA+TGG - chr6_1:68570165-68570184 Msa0891920:CDS 55.0%
AGTGACTCTTCTGCAGCAGC+TGG - chr6_1:68570243-68570262 Msa0891920:CDS 55.0%
AGCGCTGTCTGTGAAGTCAG+GGG + chr6_1:68570352-68570371 None:intergenic 55.0%
ACCTCCCATGGCACCTTCTC+GGG - chr6_1:68565565-68565584 Msa0891920:three_prime_UTR 60.0%
AAACCTCCTGCCACCCGAGA+AGG + chr6_1:68565581-68565600 None:intergenic 60.0%
CCCAGAAACCGGACCAAGGT+TGG + chr6_1:68565729-68565748 None:intergenic 60.0%
CAGGCACTTGTGCACCCGTT+TGG + chr6_1:68566096-68566115 None:intergenic 60.0%
CAAACGGGTGCACAAGTGCC+TGG - chr6_1:68566094-68566113 Msa0891920:CDS 60.0%
TTCACGGGTGCACAAGTGCC+TGG - chr6_1:68566121-68566140 Msa0891920:CDS 60.0%
GGACGCTTCACACCAGCTGA+GGG + chr6_1:68566478-68566497 None:intergenic 60.0%
TGCACAAGGGTCCTGACTGC+TGG - chr6_1:68568943-68568962 Msa0891920:intron 60.0%
GCACAAGGGTCCTGACTGCT+GGG - chr6_1:68568944-68568963 Msa0891920:intron 60.0%
CGGGCCATCACAAGCTGCTA+TGG - chr6_1:68569678-68569697 Msa0891920:CDS 60.0%
GCTGGGGCTGCTATAATCCC+AGG - chr6_1:68569829-68569848 Msa0891920:CDS 60.0%
TGCTGCCGCTGCTGTAGTGA+GGG + chr6_1:68569910-68569929 None:intergenic 60.0%
GGCAGAGCCTCCTCCATTTG+TGG + chr6_1:68570163-68570182 None:intergenic 60.0%
GGAGGCTCTGCCAATGGTCA+AGG - chr6_1:68570171-68570190 Msa0891920:CDS 60.0%
GACTCTTCTGCAGCAGCTGG+TGG - chr6_1:68570246-68570265 Msa0891920:CDS 60.0%
TCTTCTGCAGCAGCTGGTGG+AGG - chr6_1:68570249-68570268 Msa0891920:CDS 60.0%
! CCATGGGAGGTATGCCCCCT+TGG + chr6_1:68565556-68565575 None:intergenic 65.0%
! CCAAGGGGGCATACCTCCCA+TGG - chr6_1:68565553-68565572 Msa0891920:three_prime_UTR 65.0%
!! ACCCGAGAAGGTGCCATGGG+AGG + chr6_1:68565569-68565588 None:intergenic 65.0%
TCCCATGGCACCTTCTCGGG+TGG - chr6_1:68565568-68565587 Msa0891920:three_prime_UTR 65.0%
!! GCCACCCGAGAAGGTGCCAT+GGG + chr6_1:68565572-68565591 None:intergenic 65.0%
!! TGCCACCCGAGAAGGTGCCA+TGG + chr6_1:68565573-68565592 None:intergenic 65.0%
ATGGCACCTTCTCGGGTGGC+AGG - chr6_1:68565572-68565591 Msa0891920:three_prime_UTR 65.0%
CGGACGCTTCACACCAGCTG+AGG + chr6_1:68566479-68566498 None:intergenic 65.0%
CAAGCTGACGCCCAGCAGTC+AGG + chr6_1:68568957-68568976 None:intergenic 65.0%
CTGCTGCCGCTGCTGTAGTG+AGG + chr6_1:68569911-68569930 None:intergenic 65.0%
TCTGCAGCAGCTGGTGGAGG+CGG - chr6_1:68570252-68570271 Msa0891920:CDS 65.0%
GCTGGTGGAGGCGGCAACAA+TGG - chr6_1:68570261-68570280 Msa0891920:CDS 65.0%
GCACCTTCTCGGGTGGCAGG+AGG - chr6_1:68565575-68565594 Msa0891920:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 68565331 68570745 68565331 ID=Msa0891920;Name=Msa0891920
chr6_1 mRNA 68565331 68570745 68565331 ID=Msa0891920-mRNA-1;Parent=Msa0891920;Name=Msa0891920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=241|1|1|1|1|1|9|323|893
chr6_1 exon 68565331 68566597 68565331 ID=Msa0891920-mRNA-1:exon:12154;Parent=Msa0891920-mRNA-1
chr6_1 exon 68566839 68566908 68566839 ID=Msa0891920-mRNA-1:exon:12153;Parent=Msa0891920-mRNA-1
chr6_1 exon 68567032 68567125 68567032 ID=Msa0891920-mRNA-1:exon:12152;Parent=Msa0891920-mRNA-1
chr6_1 exon 68567513 68567613 68567513 ID=Msa0891920-mRNA-1:exon:12151;Parent=Msa0891920-mRNA-1
chr6_1 exon 68568142 68568210 68568142 ID=Msa0891920-mRNA-1:exon:12150;Parent=Msa0891920-mRNA-1
chr6_1 exon 68568298 68568512 68568298 ID=Msa0891920-mRNA-1:exon:12149;Parent=Msa0891920-mRNA-1
chr6_1 exon 68568615 68568666 68568615 ID=Msa0891920-mRNA-1:exon:12148;Parent=Msa0891920-mRNA-1
chr6_1 exon 68569110 68569241 68569110 ID=Msa0891920-mRNA-1:exon:12147;Parent=Msa0891920-mRNA-1
chr6_1 exon 68569500 68570745 68569500 ID=Msa0891920-mRNA-1:exon:12146;Parent=Msa0891920-mRNA-1
chr6_1 five_prime_UTR 68570505 68570745 68570505 ID=Msa0891920-mRNA-1:five_prime_utr;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68569500 68570504 68569500 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68569110 68569241 68569110 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68568615 68568666 68568615 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68568298 68568512 68568298 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68568142 68568210 68568142 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68567513 68567613 68567513 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68567032 68567125 68567032 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68566839 68566908 68566839 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 CDS 68565654 68566597 68565654 ID=Msa0891920-mRNA-1:cds;Parent=Msa0891920-mRNA-1
chr6_1 three_prime_UTR 68565331 68565653 68565331 ID=Msa0891920-mRNA-1:three_prime_utr;Parent=Msa0891920-mRNA-1
Gene Sequence

>Msa0891920

ATGGCACCTTCTCGGGTGGCAGGAGGTTTAGCTCAATCATCATCAAGTTCTGGAATTTTCTTTCAAGGAGAGGGGCAGTCACATAATTTAGTTAACTCTCACTTGAGCTCGTCATTAGTTAACTCATCTAACACTATACCTGGAACTGGTCATTCCAACCTTGGTCCGGTTTCTGGGGATATGAATAACGGAATTTTGAACAGTGTGGCAAACTCAGCGCCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGAGCGCCATATGCAAAGAAGTGCAAGCATTAATGGAGACTCGTATTTAAGATTACCCGCCTCACCCTTGTCATTTACATCAAACAATATTAGTATTTCTGGGTCACCTGCAATGGATGGTTCCTCTGTAGTACAGCAGAATTCTCATCAAGATCAGAATGCTCAACAGTTGCAGCAGAATCAACAGAAGCTGCAGGGTGGTTCAAGTTCTATGCTTTTGCCTGCTTCTCAAGCTGGCTCATCTTCGCACCAAACGGGTGCACAAGTGCCTGGATCTTTCACGGGTGCACAAGTGCCTGGATCTTTCACTCAAGATCCAAATAATATATCCCACCTGCTGAAAAAACGTAGGCTGGATATCAAACAAGATGATATAATGCAACAGCAGGTAATACAGCAGCTTCTTCAGAGACAAGACCCCACACAATTCCAAAATCGTAATCCACAGTTACAGGCTATGTTTCAGCAACAGAGGCTGAAGCAACAACAAATCTTTCAGTCGTTGCCCCCAGCTCAGCAACAAATCTTTCAGTCATTACCCCAGGCTCAGCGAATGCAGTTTCTGCAGCAACAACAGCAGCAGCAACAACAGCAAATGCAGAGGCAGCAAATACCACAGCAAATGATGCAGCCCTCAGCTGGTGTGAAGCGTCCGTATGATGGTGGTGGTGTTGGAGGTGTATGTGCCCGTCGATTGATGCAGTACCTCTATCATCAAAGACAGCGACCAAATGATAATAGTATTGCATATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGCAACGATGGTGCTTAGCATTATATAGTAACGTTGGACACCATTCAGCTGGTGTTTTACCCCAGGCAACTACGCATGCTTGGCAGTGTGACATATGCGGAACTAAATCTGGAAGAAGGGGATTTGAGGCAACTTTTGATATACTACCCAGACTTAACGTAGTCAAATTTGGTGGTGGAGTGATCGATGAACTTTTGTTTTTGGACTTGCCGCGTGAAGTAAGATTTCCTTCTGGGTTGATGATGTTAGAATATACCAAAGCAGTTCAAGAGTGTGTGTATGAGCAGCTTCGTGTTGTTCGTGAGGGTCAACTTCGTATCGTATTTACTCAAGACCTAAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCACGAAGAACTTCTTCCTCGAAAGTTAGTTGCACCACAGGTCAACCAATTAGTTCAGGTTGCTCAAAAATGCCAGAGTACAATTTCTGAAAGTGGGTCAGATGGGGTCTCTCAGCAAGACTTGCAAACAAACAGTAACATGGTCCTGACTGCTGGGCGTCAGCTTGCGAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGATTTTCGAAAAGATTTGTTAGAACTTTGCAGATTTCTGAAGTTTGCAATAGCATGAAAGATCTAATCGATATATGTTTTGATCACAACGTTGGAGCACTTGAGAGTTTGAAAAATTATTCTCAATATTCAACCACCCCAAAGCTCCAAATGCAAAAGATGCAGGAGATGGAACAGGCAGCAAATGGTCAAGGACCCCCACCTGATCAAAACACACTTAATAAGCTGATGGCATTGAATCCTGGATCAAACAATCACATAAGCAATAGTAATCACAATATGGGCAATCGTGGTGCTTTGACCGGGCCATCACAAGCTGCTATGGCAATGTCCAATTACCAGAATCTTCTGATGAGGCAAAACTCAATGAATTCAAGCCCTGGCTCACTTCATCGAGAAGGGTCCCCTTTCAGTAACTCAAACCAGAATCCCTCACCAGCTTCTTTGCAAGGTGCTGGGGCTGCTATAATCCCAGGCTCTATGCAGAATTCACCTCACAACAGTAGTGGTGGATTCTCAAATCCCCATCTACCCTCACTACAGCAGCGGCAGCAGCAGCAACAACCACACCTTCAACAGCGCTCATTAAGTGCAAATAATTTACCTCAACAAAATAACTCTCAGGGACCTCAAGGAAACCAATCACTGCAACAGCAGATGATCCAGCAACTACTGCAGGATATGTCAAATAACAATGGGGGAGTACAACAACAGTCTCATAGTGGACCCAATGTAAGTGGGAATATGGCAAAGAATAATTTGGGTTTTGGGGGCCAAACTCCAACCACAAATGGAGGAGGCTCTGCCAATGGTCAAGGAAATAATGGACCTGTTTCAAGGAGTAACAGTTTCAAAGCAGCTTCAAACAGTGACTCTTCTGCAGCAGCTGGTGGAGGCGGCAACAATGGATTCAACCAGAGGACATCTGATATGTCGCAGAATCTAGCCTTACAAGACGTTGCTTCCGATTTTGCCCCTGACTTCACAGACAGCGCTTTCTTTAACAGTGATCTGGATGATAACATGGGTTTTACCTGGAAGCCATGA
Protein sequence

>Msa0891920

MAPSRVAGGLAQSSSSSGIFFQGEGQSHNLVNSHLSSSLVNSSNTIPGTGHSNLGPVSGDMNNGILNSVANSAPSVGASSLVTDANSALSGERHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAQQLQQNQQKLQGGSSSMLLPASQAGSSSHQTGAQVPGSFTGAQVPGSFTQDPNNISHLLKKRRLDIKQDDIMQQQVIQQLLQRQDPTQFQNRNPQLQAMFQQQRLKQQQIFQSLPPAQQQIFQSLPQAQRMQFLQQQQQQQQQQMQRQQIPQQMMQPSAGVKRPYDGGGVGGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKQRWCLALYSNVGHHSAGVLPQATTHAWQCDICGTKSGRRGFEATFDILPRLNVVKFGGGVIDELLFLDLPREVRFPSGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQQDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNSMKDLIDICFDHNVGALESLKNYSQYSTTPKLQMQKMQEMEQAANGQGPPPDQNTLNKLMALNPGSNNHISNSNHNMGNRGALTGPSQAAMAMSNYQNLLMRQNSMNSSPGSLHREGSPFSNSNQNPSPASLQGAGAAIIPGSMQNSPHNSSGGFSNPHLPSLQQRQQQQQPHLQQRSLSANNLPQQNNSQGPQGNQSLQQQMIQQLLQDMSNNNGGVQQQSHSGPNVSGNMAKNNLGFGGQTPTTNGGGSANGQGNNGPVSRSNSFKAASNSDSSAAAGGGGNNGFNQRTSDMSQNLALQDVASDFAPDFTDSAFFNSDLDDNMGFTWKP*