Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960380 | AES76006.2 | 82.400 | 250 | 20 | 2 | 61 | 310 | 2 | 227 | 3.92e-137 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960380 | G7KPN9 | 82.400 | 250 | 20 | 2 | 61 | 310 | 2 | 227 | 1.87e-137 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0239490 | Msa0960380 | 0.805009 | 1.641258e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960380 | MtrunA17_Chr6g0478121 | 92.424 | 132 | 9 | 1 | 179 | 310 | 10 | 140 | 6.09e-82 | 244 |
| Msa0960380 | MtrunA17_Chr6g0478141 | 96.667 | 60 | 2 | 0 | 105 | 164 | 16 | 75 | 4.16e-35 | 122 |
| Msa0960380 | MtrunA17_Chr6g0478151 | 76.271 | 59 | 6 | 1 | 1 | 59 | 1 | 51 | 3.12e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960380 | AT1G73350.2 | 41.250 | 320 | 68 | 11 | 1 | 310 | 1 | 210 | 4.92e-50 | 165 |
| Msa0960380 | AT1G73350.1 | 40.312 | 320 | 69 | 9 | 1 | 310 | 1 | 208 | 2.43e-48 | 161 |
| Msa0960380 | AT1G73350.5 | 40.909 | 264 | 70 | 8 | 76 | 310 | 7 | 213 | 3.29e-38 | 135 |
| Msa0960380 | AT1G73350.4 | 43.868 | 212 | 60 | 6 | 104 | 310 | 31 | 188 | 8.78e-34 | 122 |
| Msa0960380 | AT1G73350.7 | 43.519 | 216 | 53 | 7 | 105 | 310 | 16 | 172 | 1.83e-33 | 121 |
| Msa0960380 | AT1G73350.3 | 43.519 | 216 | 53 | 7 | 105 | 310 | 16 | 172 | 1.83e-33 | 121 |
| Msa0960380 | AT1G73350.6 | 43.192 | 213 | 52 | 7 | 108 | 310 | 17 | 170 | 4.29e-32 | 117 |
Find 83 sgRNAs with CRISPR-Local
Find 400 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAATGTATGAAACATTT+AGG | 0.234169 | 6_3:+79767785 | Msa0960380:three_prime_UTR |
| GATCGCTCCTCAACTTTCTT+TGG | 0.244252 | 6_3:-79767509 | None:intergenic |
| GGGATCTTGGCTTCCTCTAT+TGG | 0.261027 | 6_3:+79765835 | Msa0960380:CDS |
| CTGATCCCACTCTTTGGCTT+TGG | 0.285761 | 6_3:-79767248 | None:intergenic |
| GCAGAAATCGTAGTTGATTA+TGG | 0.293712 | 6_3:+79762430 | Msa0960380:exon |
| AGAAAGGAAATGAACATAAA+AGG | 0.308980 | 6_3:-79766163 | None:intergenic |
| ATCAACCTGATCCCACTCTT+TGG | 0.342722 | 6_3:-79767254 | None:intergenic |
| ACCTTTGGGGTCGGTAAGAT+TGG | 0.364856 | 6_3:-79762477 | None:intergenic |
| AAAGTTTAAGTTTGCAGCCT+TGG | 0.369474 | 6_3:+79766035 | Msa0960380:intron |
| GAAGATAGATAGAGAGAGAA+TGG | 0.388402 | 6_3:-79762381 | None:intergenic |
| TGTTTCTTTCACATACATCT+TGG | 0.389789 | 6_3:+79766202 | Msa0960380:CDS |
| AGAATGTTTGACTTGTTTAG+AGG | 0.393853 | 6_3:+79767725 | Msa0960380:three_prime_UTR |
| GGCTTATTGCCTTCAAACCT+TGG | 0.398026 | 6_3:-79767401 | None:intergenic |
| CCTTCAAACCTTGGTCGCTT+AGG | 0.398385 | 6_3:-79767392 | None:intergenic |
| AAAAGAAGAAAATCAAGAAT+TGG | 0.404001 | 6_3:+79767819 | Msa0960380:three_prime_UTR |
| GACAGCAAGCAGTGTTTGTC+AGG | 0.409346 | 6_3:+79767485 | Msa0960380:CDS |
| GAGCGTGGAGGTTATCTTCA+TGG | 0.409638 | 6_3:+79765893 | Msa0960380:CDS |
| TCTTGGCTTCCTCTATTGGC+TGG | 0.411495 | 6_3:+79765839 | Msa0960380:CDS |
| GGCTTTGGCTCAACACGTAA+TGG | 0.411633 | 6_3:-79767233 | None:intergenic |
| GTAGAGGAACACCCAGTGTC+AGG | 0.417871 | 6_3:+79767551 | Msa0960380:CDS |
| GTTGAGGAGCGATCTTTGTC+TGG | 0.421941 | 6_3:+79767518 | Msa0960380:CDS |
| TTCTGATAACGTGCCCCGAC+AGG | 0.425744 | 6_3:+79765814 | Msa0960380:CDS |
| ACTATATCTCAAGGAGCAAA+TGG | 0.436920 | 6_3:+79766071 | Msa0960380:CDS |
| AACAGACAAACAAAGCATTC+TGG | 0.442145 | 6_3:-79765748 | None:intergenic |
| AAGCAGATGCAAGAAGTTGC+TGG | 0.449188 | 6_3:+79765869 | Msa0960380:CDS |
| CCTAAGCGACCAAGGTTTGA+AGG | 0.460456 | 6_3:+79767392 | Msa0960380:CDS |
| ACGTGCCCCGACAGGGATCT+TGG | 0.464631 | 6_3:+79765822 | Msa0960380:CDS |
| ATGATTGATGATGCGCTTGA+TGG | 0.465595 | 6_3:+79767661 | Msa0960380:exon |
| ACAGATAAGAAATTGGGTAA+AGG | 0.470056 | 6_3:+79762606 | Msa0960380:intron |
| GTATGAAACATTTAGGAAGA+AGG | 0.470399 | 6_3:+79767792 | Msa0960380:three_prime_UTR |
| CCTTCATGCAACCCTGACAC+TGG | 0.490642 | 6_3:-79767563 | None:intergenic |
| CTCTCTGAGAGACACTGAAA+GGG | 0.492802 | 6_3:-79762325 | None:intergenic |
| ATGATGCGCTTGATGGTAGA+TGG | 0.493266 | 6_3:+79767668 | Msa0960380:three_prime_UTR |
| AGCAGATGCAAGAAGTTGCT+GGG | 0.498435 | 6_3:+79765870 | Msa0960380:CDS |
| CCGGCAGAGTTATCAACCTT+AGG | 0.500496 | 6_3:-79767596 | None:intergenic |
| CCTAAGGTTGATAACTCTGC+CGG | 0.502092 | 6_3:+79767596 | Msa0960380:CDS |
| CTAAGGTTGATAACTCTGCC+GGG | 0.511044 | 6_3:+79767597 | Msa0960380:CDS |
| TTGTATCAACCAGCCAATAG+AGG | 0.513664 | 6_3:-79765848 | None:intergenic |
| AGGAAGCCAAGATCCCTGTC+GGG | 0.522472 | 6_3:-79765828 | None:intergenic |
| AAATCGTAGTTGATTATGGC+AGG | 0.524807 | 6_3:+79762434 | Msa0960380:exon |
| GTATTAAATTGTAGTGAAGA+TGG | 0.526492 | 6_3:+79767750 | Msa0960380:three_prime_UTR |
| CAAAGCCAAAGAGTGGGATC+AGG | 0.528930 | 6_3:+79767249 | Msa0960380:CDS |
| GGCTCAACACGTAATGGTAA+AGG | 0.534011 | 6_3:-79767227 | None:intergenic |
| ATTATATATACCTTTGGGGT+CGG | 0.541483 | 6_3:-79762486 | None:intergenic |
| AATGGTAAAGGTACTGATGC+AGG | 0.543680 | 6_3:-79767215 | None:intergenic |
| CAAGAAGTTGCTGGGGAGCG+TGG | 0.548648 | 6_3:+79765878 | Msa0960380:CDS |
| TTTCCAACGCATGGTTGCAA+AGG | 0.549380 | 6_3:+79762659 | Msa0960380:CDS |
| CTTCATGCAACCCTGACACT+GGG | 0.549577 | 6_3:-79767562 | None:intergenic |
| AGCGTGGAGGTTATCTTCAT+GGG | 0.551295 | 6_3:+79765894 | Msa0960380:CDS |
| GGAGGTTATCTTCATGGGCG+AGG | 0.565839 | 6_3:+79765899 | Msa0960380:CDS |
| CATCTGAGCTAGCATATGCC+AGG | 0.571449 | 6_3:-79767631 | None:intergenic |
| GCATCACTAGGAGCTTGCAT+TGG | 0.574315 | 6_3:-79767422 | None:intergenic |
| TAGTAGATCGTCACTGTCCA+AGG | 0.576121 | 6_3:-79766052 | None:intergenic |
| TAACCTTTGCAACCATGCGT+TGG | 0.581821 | 6_3:-79762662 | None:intergenic |
| TGAAGGTGAAACTAAGCCTA+AGG | 0.583433 | 6_3:+79767580 | Msa0960380:CDS |
| CAGCAGCGAACACAGACTCC+AGG | 0.587051 | 6_3:-79766246 | None:intergenic |
| AGACGTTACTTTCCAACGCA+TGG | 0.588343 | 6_3:+79762650 | Msa0960380:CDS |
| CAAGGAGCAAATGGAAGCTG+AGG | 0.592081 | 6_3:+79766080 | Msa0960380:CDS |
| CCAGTGTCAGGGTTGCATGA+AGG | 0.592986 | 6_3:+79767563 | Msa0960380:CDS |
| AGATGTATGTGAAAGAAACA+TGG | 0.593526 | 6_3:-79766199 | None:intergenic |
| TCTCTCTGAGAGACACTGAA+AGG | 0.593902 | 6_3:-79762326 | None:intergenic |
| GAGGAAGCCAAGATCCCTGT+CGG | 0.595834 | 6_3:-79765829 | None:intergenic |
| TGCCAGGCCTAGTAATCCCC+CGG | 0.596355 | 6_3:-79767615 | None:intergenic |
| TGGGACTGTTATCTACAGAA+AGG | 0.599020 | 6_3:-79766179 | None:intergenic |
| GTCAGGACCAAAGAAAGTTG+AGG | 0.609624 | 6_3:+79767502 | Msa0960380:CDS |
| TAGAGGAACACCCAGTGTCA+GGG | 0.615935 | 6_3:+79767552 | Msa0960380:CDS |
| GTTGAGCCAAAGCCAAAGAG+TGG | 0.615970 | 6_3:+79767242 | Msa0960380:CDS |
| AGATTAAACCTAAGCGACCA+AGG | 0.621946 | 6_3:+79767384 | Msa0960380:CDS |
| GAGAATTATATATACCTTTG+GGG | 0.622345 | 6_3:-79762490 | None:intergenic |
| TAAGGTTGATAACTCTGCCG+GGG | 0.624952 | 6_3:+79767598 | Msa0960380:CDS |
| GATGTATGTGAAAGAAACAT+GGG | 0.629863 | 6_3:-79766198 | None:intergenic |
| GTCTGGATCGAAGAAAGTAG+AGG | 0.632307 | 6_3:+79767535 | Msa0960380:CDS |
| TGACGATCTACTATATCTCA+AGG | 0.641457 | 6_3:+79766062 | Msa0960380:CDS |
| TTGAGCCAAAGCCAAAGAGT+GGG | 0.647588 | 6_3:+79767243 | Msa0960380:CDS |
| GGTTATCTTCATGGGCGAGG+CGG | 0.653241 | 6_3:+79765902 | Msa0960380:CDS |
| GCAGATGCAAGAAGTTGCTG+GGG | 0.658673 | 6_3:+79765871 | Msa0960380:CDS |
| ACCAATCTTACCGACCCCAA+AGG | 0.660181 | 6_3:+79762476 | Msa0960380:CDS |
| GAAGTTGCTGGGGAGCGTGG+AGG | 0.665466 | 6_3:+79765881 | Msa0960380:CDS |
| GGAAGCCAAGATCCCTGTCG+GGG | 0.673978 | 6_3:-79765827 | None:intergenic |
| CTTTACCATTAGATACAGAG+CGG | 0.686766 | 6_3:+79767172 | Msa0960380:intron |
| TTAGTAATAGAAGCATCACT+AGG | 0.690439 | 6_3:-79767434 | None:intergenic |
| TCTCTGAGAGACACTGAAAG+GGG | 0.694541 | 6_3:-79762324 | None:intergenic |
| AAGGTTGATAACTCTGCCGG+GGG | 0.699138 | 6_3:+79767599 | Msa0960380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAAATGAAAATTG+AGG | - | chr6_3:79762515-79762534 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTAATGTTTTTA+CGG | + | chr6_3:79762522-79762541 | Msa0960380:intron | 10.0% |
| !!! | TTTTGATTTTTATTGAATTT+TGG | + | chr6_3:79762561-79762580 | Msa0960380:intron | 10.0% |
| !! | AAAAAAAAAAAATGCATAAT+TGG | + | chr6_3:79762928-79762947 | Msa0960380:intron | 10.0% |
| !! | AGTTATATATATGTATTATT+TGG | + | chr6_3:79767145-79767164 | Msa0960380:intron | 10.0% |
| !!! | TAATTTTACAGATAAGAAAT+TGG | + | chr6_3:79762599-79762618 | Msa0960380:intron | 15.0% |
| !!! | AATTTTACAGATAAGAAATT+GGG | + | chr6_3:79762600-79762619 | Msa0960380:intron | 15.0% |
| !! | TAAAAAAAAAAAAGAAGAGA+AGG | - | chr6_3:79762701-79762720 | None:intergenic | 15.0% |
| !! | TGAGAAATAAAAAAATAATG+AGG | + | chr6_3:79763219-79763238 | Msa0960380:intron | 15.0% |
| !!! | AAATGTAAGTGTTTTATAAA+AGG | - | chr6_3:79765130-79765149 | None:intergenic | 15.0% |
| !! | ATCATAAATATATTCAATTC+TGG | - | chr6_3:79766351-79766370 | None:intergenic | 15.0% |
| !! | TCTCAAATAAAAGATTTAAA+AGG | - | chr6_3:79766542-79766561 | None:intergenic | 15.0% |
| !!! | TTTAAATCTTTTATTTGAGA+AGG | + | chr6_3:79766542-79766561 | Msa0960380:intron | 15.0% |
| !! | GAAGATAAATCATAAATTAT+TGG | - | chr6_3:79766569-79766588 | None:intergenic | 15.0% |
| !! | TTTAAATGTATGAAACATTT+AGG | + | chr6_3:79767785-79767804 | Msa0960380:three_prime_UTR | 15.0% |
| !!! | TTTTATTGAATTTTGGTTAC+TGG | + | chr6_3:79762568-79762587 | Msa0960380:intron | 20.0% |
| !!! | TTTATTGAATTTTGGTTACT+GGG | + | chr6_3:79762569-79762588 | Msa0960380:intron | 20.0% |
| !! | AAAAAAAATGCATAATTGGA+AGG | + | chr6_3:79762932-79762951 | Msa0960380:intron | 20.0% |
| !! | TAAAAAAATAATGAGGTAGA+AGG | + | chr6_3:79763226-79763245 | Msa0960380:intron | 20.0% |
| !!! | AATTTGCTACATTCTTAATA+GGG | - | chr6_3:79763294-79763313 | None:intergenic | 20.0% |
| !!! | TTTATCATTTTCCATGTAAT+GGG | - | chr6_3:79763515-79763534 | None:intergenic | 20.0% |
| !!! | ATTTATCATTTTCCATGTAA+TGG | - | chr6_3:79763516-79763535 | None:intergenic | 20.0% |
| !! | TCAATGATTGGAATATATAA+AGG | - | chr6_3:79763633-79763652 | None:intergenic | 20.0% |
| !! | TAAAAACTAATTGGTATTAG+TGG | + | chr6_3:79763859-79763878 | Msa0960380:intron | 20.0% |
| !! | CCAATGATTACAATATATAA+CGG | - | chr6_3:79764523-79764542 | None:intergenic | 20.0% |
| !! | AACAAATTGATTAGAGAAAA+GGG | - | chr6_3:79764592-79764611 | None:intergenic | 20.0% |
| !!! | TCTCGTTTTTTATACAATAT+TGG | - | chr6_3:79764917-79764936 | None:intergenic | 20.0% |
| !!! | TTATAAAAGGTAAGGTATTT+TGG | - | chr6_3:79765117-79765136 | None:intergenic | 20.0% |
| !!! | TAAGTGTTTTATAAAAGGTA+AGG | - | chr6_3:79765125-79765144 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTTCTAAAATAGA+AGG | - | chr6_3:79765305-79765324 | None:intergenic | 20.0% |
| !!! | TTGAGTTTTCAACATTTATT+TGG | - | chr6_3:79765631-79765650 | None:intergenic | 20.0% |
| !! | AATATATTTATGATCCAGTA+AGG | + | chr6_3:79766357-79766376 | Msa0960380:intron | 20.0% |
| !! | ATATATTTATGATCCAGTAA+GGG | + | chr6_3:79766358-79766377 | Msa0960380:intron | 20.0% |
| !! | ACAGTGTAAAGATAATATTT+AGG | + | chr6_3:79766487-79766506 | Msa0960380:intron | 20.0% |
| !! | TAAAGATAATATTTAGGAGT+GGG | + | chr6_3:79766493-79766512 | Msa0960380:intron | 20.0% |
| !!! | GTTTATTTTCCTTTTCATTA+GGG | + | chr6_3:79766600-79766619 | Msa0960380:intron | 20.0% |
| !! | AGAATTGATTATATCATGTT+TGG | + | chr6_3:79766673-79766692 | Msa0960380:intron | 20.0% |
| !! | TCAGAATTTAACAATAACTT+TGG | + | chr6_3:79766774-79766793 | Msa0960380:intron | 20.0% |
| !! | CAGAATTTAACAATAACTTT+GGG | + | chr6_3:79766775-79766794 | Msa0960380:intron | 20.0% |
| !!! | TATCTATATTTTTGCAATAC+AGG | + | chr6_3:79767333-79767352 | Msa0960380:intron | 20.0% |
| !! | AAAAGAAGAAAATCAAGAAT+TGG | + | chr6_3:79767819-79767838 | Msa0960380:three_prime_UTR | 20.0% |
| ! | GAGAATTATATATACCTTTG+GGG | - | chr6_3:79762493-79762512 | None:intergenic | 25.0% |
| ! | GGAGAATTATATATACCTTT+GGG | - | chr6_3:79762494-79762513 | None:intergenic | 25.0% |
| ! | AGGAGAATTATATATACCTT+TGG | - | chr6_3:79762495-79762514 | None:intergenic | 25.0% |
| ! | AGAAGATATACTTACTTACT+TGG | + | chr6_3:79762832-79762851 | Msa0960380:intron | 25.0% |
| !! | GAATAAGCTTTGTAATTTGT+AGG | + | chr6_3:79763253-79763272 | Msa0960380:intron | 25.0% |
| !!! | CAATTTGCTACATTCTTAAT+AGG | - | chr6_3:79763295-79763314 | None:intergenic | 25.0% |
| ! | CTATTAAGAATGTAGCAAAT+TGG | + | chr6_3:79763293-79763312 | Msa0960380:intron | 25.0% |
| ! | TTCTTCTTTGATTGTGTATT+CGG | + | chr6_3:79763339-79763358 | Msa0960380:intron | 25.0% |
| ! | GATTAATATAACCCATTACA+TGG | + | chr6_3:79763501-79763520 | Msa0960380:intron | 25.0% |
| !! | AGTTTTTACTGTGGTTTTTT+TGG | - | chr6_3:79763847-79763866 | None:intergenic | 25.0% |
| ! | AAACCACAGTAAAAACTAAT+TGG | + | chr6_3:79763850-79763869 | Msa0960380:intron | 25.0% |
| !!! | ATACCAATTAGTTTTTACTG+TGG | - | chr6_3:79763856-79763875 | None:intergenic | 25.0% |
| !! | TTCTTTACATGATTCAGTTT+TGG | + | chr6_3:79764244-79764263 | Msa0960380:intron | 25.0% |
| !! | TCTTTACATGATTCAGTTTT+GGG | + | chr6_3:79764245-79764264 | Msa0960380:intron | 25.0% |
| ! | TACCAATTAATGCAGTATAA+GGG | + | chr6_3:79764329-79764348 | Msa0960380:intron | 25.0% |
| ! | GGAAATAGTAAATGATACTA+TGG | + | chr6_3:79764393-79764412 | Msa0960380:intron | 25.0% |
| ! | TAGTAAATGATACTATGGAA+AGG | + | chr6_3:79764398-79764417 | Msa0960380:intron | 25.0% |
| ! | AGTAAATGATACTATGGAAA+GGG | + | chr6_3:79764399-79764418 | Msa0960380:intron | 25.0% |
| ! | AACAAGTTTACAGGAAAATA+AGG | + | chr6_3:79764436-79764455 | Msa0960380:intron | 25.0% |
| ! | CCGTTATATATTGTAATCAT+TGG | + | chr6_3:79764520-79764539 | Msa0960380:intron | 25.0% |
| ! | CAACAAATTGATTAGAGAAA+AGG | - | chr6_3:79764593-79764612 | None:intergenic | 25.0% |
| !! | CTTTTCTCTAATCAATTTGT+TGG | + | chr6_3:79764591-79764610 | Msa0960380:intron | 25.0% |
| !!! | ACCATAACAAGTTGTTTTTT+TGG | + | chr6_3:79764649-79764668 | Msa0960380:intron | 25.0% |
| !!! | CCATAACAAGTTGTTTTTTT+GGG | + | chr6_3:79764650-79764669 | Msa0960380:intron | 25.0% |
| ! | ATTGTATAAAAAACGAGATC+TGG | + | chr6_3:79764919-79764938 | Msa0960380:intron | 25.0% |
| ! | AATTAGGTTAAACTTGTAGA+AGG | + | chr6_3:79765059-79765078 | Msa0960380:intron | 25.0% |
| !!! | TTTTTCTAAAATAGAAGGCA+TGG | - | chr6_3:79765300-79765319 | None:intergenic | 25.0% |
| ! | ATAATCGATGACAATACAAT+AGG | - | chr6_3:79765581-79765600 | None:intergenic | 25.0% |
| !! | TTCAATGAGCTAATTACTTT+TGG | - | chr6_3:79765678-79765697 | None:intergenic | 25.0% |
| ! | AAGTAATTAGCTCATTGAAT+TGG | + | chr6_3:79765679-79765698 | Msa0960380:intron | 25.0% |
| ! | AGAAAGGAAATGAACATAAA+AGG | - | chr6_3:79766166-79766185 | None:intergenic | 25.0% |
| ! | TTCTTAAAACTGCTTGAAAA+CGG | + | chr6_3:79766312-79766331 | Msa0960380:intron | 25.0% |
| ! | TATATTTATGATCCAGTAAG+GGG | + | chr6_3:79766359-79766378 | Msa0960380:intron | 25.0% |
| !! | AACATACTAGTTTGAATGAA+TGG | - | chr6_3:79766402-79766421 | None:intergenic | 25.0% |
| ! | TTCATTCAAACTAGTATGTT+TGG | + | chr6_3:79766402-79766421 | Msa0960380:intron | 25.0% |
| ! | GTAAAGATAATATTTAGGAG+TGG | + | chr6_3:79766492-79766511 | Msa0960380:intron | 25.0% |
| ! | AATGAAAAGGAAAATAAACG+AGG | - | chr6_3:79766599-79766618 | None:intergenic | 25.0% |
| !!! | CGTTTATTTTCCTTTTCATT+AGG | + | chr6_3:79766599-79766618 | Msa0960380:intron | 25.0% |
| ! | TATTTCAATCCCTAATGAAA+AGG | - | chr6_3:79766612-79766631 | None:intergenic | 25.0% |
| !!! | TGAAATACTGGTTTCAATTT+TGG | + | chr6_3:79766625-79766644 | Msa0960380:intron | 25.0% |
| ! | TTCAAATAGAATCCACTTTA+AGG | + | chr6_3:79766819-79766838 | Msa0960380:intron | 25.0% |
| ! | ATAAGTAGCAATAACTTATC+AGG | + | chr6_3:79766851-79766870 | Msa0960380:intron | 25.0% |
| !!! | GAGATTAGATTTTTTTATCG+TGG | + | chr6_3:79766965-79766984 | Msa0960380:intron | 25.0% |
| !! | TTTTCCTTTTTCCTATTTCA+TGG | + | chr6_3:79767069-79767088 | Msa0960380:intron | 25.0% |
| ! | GTATTAAATTGTAGTGAAGA+TGG | + | chr6_3:79767750-79767769 | Msa0960380:three_prime_UTR | 25.0% |
| !! | ATTATATATACCTTTGGGGT+CGG | - | chr6_3:79762489-79762508 | None:intergenic | 30.0% |
| ACAGATAAGAAATTGGGTAA+AGG | + | chr6_3:79762606-79762625 | Msa0960380:intron | 30.0% | |
| ! | TATGTACCTATTTGTTACTG+TGG | + | chr6_3:79762725-79762744 | Msa0960380:intron | 30.0% |
| ! | AGATATATGTTTTGCAATCG+CGG | + | chr6_3:79763050-79763069 | Msa0960380:intron | 30.0% |
| ATTCTTAATAGGGAGTTCAA+AGG | - | chr6_3:79763284-79763303 | None:intergenic | 30.0% | |
| TCTTCTTTGATTGTGTATTC+GGG | + | chr6_3:79763340-79763359 | Msa0960380:intron | 30.0% | |
| ! | TACTGCATTAATTGGTAGTT+CGG | - | chr6_3:79763399-79763418 | None:intergenic | 30.0% |
| TACCAATTAATGCAGTAAAC+AGG | + | chr6_3:79763402-79763421 | Msa0960380:intron | 30.0% | |
| TTCCTGTTTACTGCATTAAT+TGG | - | chr6_3:79763407-79763426 | None:intergenic | 30.0% | |
| TGTAAATAGTAATCAGACCA+TGG | + | chr6_3:79763465-79763484 | Msa0960380:intron | 30.0% | |
| GTAAATAGTAATCAGACCAT+GGG | + | chr6_3:79763466-79763485 | Msa0960380:intron | 30.0% | |
| GGAAGTTTGATAAAAGAAGT+GGG | - | chr6_3:79763612-79763631 | None:intergenic | 30.0% | |
| AGGAAGTTTGATAAAAGAAG+TGG | - | chr6_3:79763613-79763632 | None:intergenic | 30.0% | |
| GTCGAAAATATGTCAATGAT+TGG | - | chr6_3:79763645-79763664 | None:intergenic | 30.0% | |
| !! | TTTTCTATGAGAGGTTTTGA+CGG | - | chr6_3:79763736-79763755 | None:intergenic | 30.0% |
| AAACCTCTCATAGAAAACAA+CGG | + | chr6_3:79763739-79763758 | Msa0960380:intron | 30.0% | |
| ! | TGACTTCTTTAGAGATTTCT+CGG | - | chr6_3:79763779-79763798 | None:intergenic | 30.0% |
| AACAACAACACTGATAATCA+CGG | + | chr6_3:79763955-79763974 | Msa0960380:intron | 30.0% | |
| AGAATCATCACAAGAGAATA+TGG | + | chr6_3:79764022-79764041 | Msa0960380:intron | 30.0% | |
| ! | ATTGGTAGTTCAGATCTTTA+AGG | - | chr6_3:79764316-79764335 | None:intergenic | 30.0% |
| CTACCAATTAATGCAGTATA+AGG | + | chr6_3:79764328-79764347 | Msa0960380:intron | 30.0% | |
| TTCCCTTATACTGCATTAAT+TGG | - | chr6_3:79764334-79764353 | None:intergenic | 30.0% | |
| ATACTATGGAAAGGGAAATA+TGG | + | chr6_3:79764407-79764426 | Msa0960380:intron | 30.0% | |
| ! | TGGATTGATAACAAGTTTAC+AGG | + | chr6_3:79764427-79764446 | Msa0960380:intron | 30.0% |
| !! | CCCAAAAAAACAACTTGTTA+TGG | - | chr6_3:79764653-79764672 | None:intergenic | 30.0% |
| !!! | AGGTAAGGTATTTTGGTATT+GGG | - | chr6_3:79765110-79765129 | None:intergenic | 30.0% |
| !!! | AAGGTAAGGTATTTTGGTAT+TGG | - | chr6_3:79765111-79765130 | None:intergenic | 30.0% |
| ! | TGTCATCGATTATTATCCAT+CGG | + | chr6_3:79765588-79765607 | Msa0960380:intron | 30.0% |
| TGTAAAAATAGAACTTCCGA+TGG | - | chr6_3:79765607-79765626 | None:intergenic | 30.0% | |
| GATGTATGTGAAAGAAACAT+GGG | - | chr6_3:79766201-79766220 | None:intergenic | 30.0% | |
| AGATGTATGTGAAAGAAACA+TGG | - | chr6_3:79766202-79766221 | None:intergenic | 30.0% | |
| TGTTTCTTTCACATACATCT+TGG | + | chr6_3:79766202-79766221 | Msa0960380:CDS | 30.0% | |
| AAAAGGAAAATAAACGAGGA+TGG | - | chr6_3:79766595-79766614 | None:intergenic | 30.0% | |
| TTCATTAGGGATTGAAATAC+TGG | + | chr6_3:79766613-79766632 | Msa0960380:intron | 30.0% | |
| !!! | AATACTGGTTTCAATTTTGG+AGG | + | chr6_3:79766628-79766647 | Msa0960380:intron | 30.0% |
| ! | AAGCTAGAATTTGTAGCTTT+TGG | - | chr6_3:79766801-79766820 | None:intergenic | 30.0% |
| CTTATCAGGCAAACTATTTA+AGG | + | chr6_3:79766865-79766884 | Msa0960380:intron | 30.0% | |
| TAAGGAGAATTTGTAGCTAT+TGG | + | chr6_3:79766883-79766902 | Msa0960380:intron | 30.0% | |
| ! | TGTTAAGATTGCTACTTATC+AGG | + | chr6_3:79766933-79766952 | Msa0960380:intron | 30.0% |
| TATCGTGGACAAATCTTAAT+AGG | + | chr6_3:79766980-79766999 | Msa0960380:intron | 30.0% | |
| ! | AAAAAAGCTTTGGTTTCATG+TGG | - | chr6_3:79767036-79767055 | None:intergenic | 30.0% |
| ATCACGTGTTAAAAAAGCTT+TGG | - | chr6_3:79767046-79767065 | None:intergenic | 30.0% | |
| !! | TTAGTAATAGAAGCATCACT+AGG | - | chr6_3:79767437-79767456 | None:intergenic | 30.0% |
| !! | AGAATGTTTGACTTGTTTAG+AGG | + | chr6_3:79767725-79767744 | Msa0960380:three_prime_UTR | 30.0% |
| GTATGAAACATTTAGGAAGA+AGG | + | chr6_3:79767792-79767811 | Msa0960380:three_prime_UTR | 30.0% | |
| AAAAAAAAACTGGCACATCA+GGG | - | chr6_3:79767905-79767924 | None:intergenic | 30.0% | |
| TAAAAAAAAACTGGCACATC+AGG | - | chr6_3:79767906-79767925 | None:intergenic | 30.0% | |
| GAAGATAGATAGAGAGAGAA+TGG | - | chr6_3:79762384-79762403 | None:intergenic | 35.0% | |
| GCAGAAATCGTAGTTGATTA+TGG | + | chr6_3:79762430-79762449 | Msa0960380:exon | 35.0% | |
| AAATCGTAGTTGATTATGGC+AGG | + | chr6_3:79762434-79762453 | Msa0960380:exon | 35.0% | |
| CTTCAACCACAGTAACAAAT+AGG | - | chr6_3:79762734-79762753 | None:intergenic | 35.0% | |
| GGAATTACATGTGTTAGTGT+CGG | + | chr6_3:79762953-79762972 | Msa0960380:intron | 35.0% | |
| ! | AAGGTTGATCTCTTAGCATA+TGG | - | chr6_3:79763013-79763032 | None:intergenic | 35.0% |
| CATATATCTCCTCACTCATT+AGG | - | chr6_3:79763039-79763058 | None:intergenic | 35.0% | |
| ATCAAAGAAGAAAACCAGCA+AGG | - | chr6_3:79763331-79763350 | None:intergenic | 35.0% | |
| CTTCTTTGATTGTGTATTCG+GGG | + | chr6_3:79763341-79763360 | Msa0960380:intron | 35.0% | |
| TTCTTTGATTGTGTATTCGG+GGG | + | chr6_3:79763342-79763361 | Msa0960380:intron | 35.0% | |
| !! | ATAGAAGGTACTTAGAGAGA+AGG | + | chr6_3:79763558-79763577 | Msa0960380:intron | 35.0% |
| AGTTTGATAAAAGAAGTGGG+TGG | - | chr6_3:79763609-79763628 | None:intergenic | 35.0% | |
| GATGAGTAATAGCATTGTGA+TGG | + | chr6_3:79763708-79763727 | Msa0960380:intron | 35.0% | |
| ! | ATTTCTCGGTTTCGATTTTG+GGG | - | chr6_3:79763765-79763784 | None:intergenic | 35.0% |
| ! | GATTTCTCGGTTTCGATTTT+GGG | - | chr6_3:79763766-79763785 | None:intergenic | 35.0% |
| ! | AGATTTCTCGGTTTCGATTT+TGG | - | chr6_3:79763767-79763786 | None:intergenic | 35.0% |
| CTAATTGGTATTAGTGGTAG+CGG | + | chr6_3:79763865-79763884 | Msa0960380:intron | 35.0% | |
| !! | AGTGTTGTTGTTTGACGATT+TGG | - | chr6_3:79763947-79763966 | None:intergenic | 35.0% |
| AGAAAGCCATAGATGATGTT+CGG | - | chr6_3:79764078-79764097 | None:intergenic | 35.0% | |
| !!! | ATGATTCAGTTTTGGGAGTT+GGG | + | chr6_3:79764252-79764271 | Msa0960380:intron | 35.0% |
| TTACAACGGTACTTTCATCA+AGG | - | chr6_3:79764283-79764302 | None:intergenic | 35.0% | |
| !! | TGATGAAAGTACCGTTGTAA+TGG | + | chr6_3:79764283-79764302 | Msa0960380:intron | 35.0% |
| ! | AAGTACCGTTGTAATGGTTA+TGG | + | chr6_3:79764289-79764308 | Msa0960380:intron | 35.0% |
| AAGGTCCATAACCATTACAA+CGG | - | chr6_3:79764297-79764316 | None:intergenic | 35.0% | |
| AGAGATTCCTTCATTCCAAT+TGG | - | chr6_3:79764357-79764376 | None:intergenic | 35.0% | |
| TCTCTGTATCACTTTCTCAA+TGG | + | chr6_3:79764372-79764391 | Msa0960380:intron | 35.0% | |
| TAACGGAAGTTTGAGAAGAT+AGG | - | chr6_3:79764506-79764525 | None:intergenic | 35.0% | |
| TCTGTTAGCAATTCTCTGAA+TGG | + | chr6_3:79764550-79764569 | Msa0960380:intron | 35.0% | |
| !! | TCAATTTGTTGGCTCTACTT+TGG | + | chr6_3:79764602-79764621 | Msa0960380:intron | 35.0% |
| ACGACATAAACAGTGTTTAG+TGG | + | chr6_3:79764681-79764700 | Msa0960380:intron | 35.0% | |
| CTTGGTTACAATGATCTACT+TGG | - | chr6_3:79764769-79764788 | None:intergenic | 35.0% | |
| CAAGTAGATCATTGTAACCA+AGG | + | chr6_3:79764767-79764786 | Msa0960380:intron | 35.0% | |
| GTAGATTGAGAAGAGAAACA+CGG | + | chr6_3:79764950-79764969 | Msa0960380:intron | 35.0% | |
| TAGAAGGCTTATCTCTTGTT+TGG | + | chr6_3:79765075-79765094 | Msa0960380:intron | 35.0% | |
| ! | AGAAGGCTTATCTCTTGTTT+GGG | + | chr6_3:79765076-79765095 | Msa0960380:intron | 35.0% |
| !!! | TATTTTGGTATTGGGCCTTA+GGG | - | chr6_3:79765102-79765121 | None:intergenic | 35.0% |
| !! | TGGCGTGTTTTGTTAAAAGA+AGG | - | chr6_3:79765229-79765248 | None:intergenic | 35.0% |
| TTACAACTTTGCCTTTGAGT+AGG | + | chr6_3:79765443-79765462 | Msa0960380:intron | 35.0% | |
| TTGATTGTAACCGCTTATGT+AGG | + | chr6_3:79765550-79765569 | Msa0960380:intron | 35.0% | |
| TGATTGTAACCGCTTATGTA+GGG | + | chr6_3:79765551-79765570 | Msa0960380:intron | 35.0% | |
| TGACATTCGTTCTCAATTGA+TGG | + | chr6_3:79765710-79765729 | Msa0960380:intron | 35.0% | |
| GACATTCGTTCTCAATTGAT+GGG | + | chr6_3:79765711-79765730 | Msa0960380:intron | 35.0% | |
| ! | AACAGACAAACAAAGCATTC+TGG | - | chr6_3:79765751-79765770 | None:intergenic | 35.0% |
| ! | AAAGTTTAAGTTTGCAGCCT+TGG | + | chr6_3:79766035-79766054 | Msa0960380:intron | 35.0% |
| TGACGATCTACTATATCTCA+AGG | + | chr6_3:79766062-79766081 | Msa0960380:CDS | 35.0% | |
| ACTATATCTCAAGGAGCAAA+TGG | + | chr6_3:79766071-79766090 | Msa0960380:CDS | 35.0% | |
| !!! | CAGACACAATTTTTTGTTCC+TGG | + | chr6_3:79766228-79766247 | Msa0960380:CDS | 35.0% |
| TCAAACTAGTATGTTTGGTC+TGG | + | chr6_3:79766407-79766426 | Msa0960380:intron | 35.0% | |
| TATCAGACTTCTCCTTAAAG+TGG | - | chr6_3:79766834-79766853 | None:intergenic | 35.0% | |
| GCTTCCATGAAATAGGAAAA+AGG | - | chr6_3:79767076-79767095 | None:intergenic | 35.0% | |
| AAACAGTGCTTCCATGAAAT+AGG | - | chr6_3:79767083-79767102 | None:intergenic | 35.0% | |
| CTTTACCATTAGATACAGAG+CGG | + | chr6_3:79767172-79767191 | Msa0960380:intron | 35.0% | |
| ATACACTGAAACCAGAAAAC+AGG | - | chr6_3:79767307-79767326 | None:intergenic | 35.0% | |
| CGTCTGTGTTAGTACTTCAT+AGG | - | chr6_3:79762860-79762879 | None:intergenic | 40.0% | |
| AACCTTTCACCTAATGAGTG+AGG | + | chr6_3:79763027-79763046 | Msa0960380:intron | 40.0% | |
| ! | ATATGTTTTGCAATCGCGGT+TGG | + | chr6_3:79763054-79763073 | Msa0960380:intron | 40.0% |
| CTTAATAGGGAGTTCAAAGG+AGG | - | chr6_3:79763281-79763300 | None:intergenic | 40.0% | |
| ATGCAGTAAACAGGAACCAA+TGG | + | chr6_3:79763411-79763430 | Msa0960380:intron | 40.0% | |
| TGCAGTAAACAGGAACCAAT+GGG | + | chr6_3:79763412-79763431 | Msa0960380:intron | 40.0% | |
| AGAAATCCCTTCATTCCCAT+TGG | - | chr6_3:79763430-79763449 | None:intergenic | 40.0% | |
| ATAGTAATCAGACCATGGGA+AGG | + | chr6_3:79763470-79763489 | Msa0960380:intron | 40.0% | |
| TAGTAATCAGACCATGGGAA+GGG | + | chr6_3:79763471-79763490 | Msa0960380:intron | 40.0% | |
| AATCCATATTTCCCTTCCCA+TGG | - | chr6_3:79763485-79763504 | None:intergenic | 40.0% | |
| TCTAAGTACCTTCTATTCCC+TGG | - | chr6_3:79763554-79763573 | None:intergenic | 40.0% | |
| ATAAAAGAAGTGGGTGGAAG+TGG | - | chr6_3:79763603-79763622 | None:intergenic | 40.0% | |
| ! | CATTGACATATTTTCGACCG+AGG | + | chr6_3:79763647-79763666 | Msa0960380:intron | 40.0% |
| ACTCAGTCTGGTGATTATAG+CGG | + | chr6_3:79763686-79763705 | Msa0960380:intron | 40.0% | |
| AAAGAAGTCAGACTTGTCAG+AGG | + | chr6_3:79763789-79763808 | Msa0960380:intron | 40.0% | |
| AAGAAGTCAGACTTGTCAGA+GGG | + | chr6_3:79763790-79763809 | Msa0960380:intron | 40.0% | |
| TCGAATGCAAGGAACATATC+AGG | + | chr6_3:79763916-79763935 | Msa0960380:intron | 40.0% | |
| AATGCAAGGAACATATCAGG+TGG | + | chr6_3:79763919-79763938 | Msa0960380:intron | 40.0% | |
| TGATTACGTTGTTGTCACTC+TGG | - | chr6_3:79764003-79764022 | None:intergenic | 40.0% | |
| AGTCAGGGAGAAGAACTTAA+AGG | - | chr6_3:79764104-79764123 | None:intergenic | 40.0% | |
| AAGTTCTTCTCCCTGACTTA+AGG | + | chr6_3:79764106-79764125 | Msa0960380:intron | 40.0% | |
| !! | TAGGAAGTATCAATCTCCTC+TGG | + | chr6_3:79764184-79764203 | Msa0960380:intron | 40.0% |
| !!! | CATGATTCAGTTTTGGGAGT+TGG | + | chr6_3:79764251-79764270 | Msa0960380:intron | 40.0% |
| !!! | TGATTCAGTTTTGGGAGTTG+GGG | + | chr6_3:79764253-79764272 | Msa0960380:intron | 40.0% |
| TGCAGTATAAGGGAACCAAT+TGG | + | chr6_3:79764339-79764358 | Msa0960380:intron | 40.0% | |
| AAGGGAACCAATTGGAATGA+AGG | + | chr6_3:79764347-79764366 | Msa0960380:intron | 40.0% | |
| !!! | TCGTTTTTGGTCGATTTCGT+GGG | + | chr6_3:79764873-79764892 | Msa0960380:intron | 40.0% |
| !!! | CTTGTTTTCTGTTTCTGCTG+CGG | + | chr6_3:79765005-79765024 | Msa0960380:intron | 40.0% |
| GAAGAGGACTAGGTCAAATT+AGG | + | chr6_3:79765043-79765062 | Msa0960380:intron | 40.0% | |
| !!! | GTATTTTGGTATTGGGCCTT+AGG | - | chr6_3:79765103-79765122 | None:intergenic | 40.0% |
| GTTCGTAAGAACCTACTCAA+AGG | - | chr6_3:79765457-79765476 | None:intergenic | 40.0% | |
| CGGTTACAATCAATGTAGTC+AGG | - | chr6_3:79765543-79765562 | None:intergenic | 40.0% | |
| ATAGGTATGCCCTACATAAG+CGG | - | chr6_3:79765563-79765582 | None:intergenic | 40.0% | |
| TTGTATCAACCAGCCAATAG+AGG | - | chr6_3:79765851-79765870 | None:intergenic | 40.0% | |
| TGGGACTGTTATCTACAGAA+AGG | - | chr6_3:79766182-79766201 | None:intergenic | 40.0% | |
| ATTTATGATCCAGTAAGGGG+AGG | + | chr6_3:79766362-79766381 | Msa0960380:intron | 40.0% | |
| GTGTACTTGCATAGCTATCT+TGG | - | chr6_3:79766469-79766488 | None:intergenic | 40.0% | |
| CGCTCTGTATCTAATGGTAA+AGG | - | chr6_3:79767174-79767193 | None:intergenic | 40.0% | |
| !! | AATGGTAAAGGTACTGATGC+AGG | - | chr6_3:79767218-79767237 | None:intergenic | 40.0% |
| AAACCAGAAAACAGGCATAG+GGG | - | chr6_3:79767299-79767318 | None:intergenic | 40.0% | |
| GAAACCAGAAAACAGGCATA+GGG | - | chr6_3:79767300-79767319 | None:intergenic | 40.0% | |
| TGAAACCAGAAAACAGGCAT+AGG | - | chr6_3:79767301-79767320 | None:intergenic | 40.0% | |
| AGATTAAACCTAAGCGACCA+AGG | + | chr6_3:79767384-79767403 | Msa0960380:CDS | 40.0% | |
| TGAAGGTGAAACTAAGCCTA+AGG | + | chr6_3:79767580-79767599 | Msa0960380:CDS | 40.0% | |
| !! | ATGATTGATGATGCGCTTGA+TGG | + | chr6_3:79767661-79767680 | Msa0960380:exon | 40.0% |
| ! | TCTCTGAGAGACACTGAAAG+GGG | - | chr6_3:79762327-79762346 | None:intergenic | 45.0% |
| ! | CTCTCTGAGAGACACTGAAA+GGG | - | chr6_3:79762328-79762347 | None:intergenic | 45.0% |
| ! | TCTCTCTGAGAGACACTGAA+AGG | - | chr6_3:79762329-79762348 | None:intergenic | 45.0% |
| ! | AGACGTTACTTTCCAACGCA+TGG | + | chr6_3:79762650-79762669 | Msa0960380:CDS | 45.0% |
| TTTCCAACGCATGGTTGCAA+AGG | + | chr6_3:79762659-79762678 | Msa0960380:CDS | 45.0% | |
| TAACCTTTGCAACCATGCGT+TGG | - | chr6_3:79762665-79762684 | None:intergenic | 45.0% | |
| ACTAACACAGACGTGAACAC+CGG | + | chr6_3:79762867-79762886 | Msa0960380:intron | 45.0% | |
| TAATGTGTCAGTGTCGTGTC+CGG | - | chr6_3:79762889-79762908 | None:intergenic | 45.0% | |
| ! | TTAGTGTCGGACACTGACAT+GGG | + | chr6_3:79762966-79762985 | Msa0960380:intron | 45.0% |
| !! | TGGGTTGGTGCTATAGAGAT+TGG | + | chr6_3:79762985-79763004 | Msa0960380:intron | 45.0% |
| CTCCTCACTCATTAGGTGAA+AGG | - | chr6_3:79763032-79763051 | None:intergenic | 45.0% | |
| CGTCACTATTGGACAACACT+TGG | + | chr6_3:79763188-79763207 | Msa0960380:intron | 45.0% | |
| !! | GGAGCTTTGTTTATCCTTGC+TGG | + | chr6_3:79763314-79763333 | Msa0960380:intron | 45.0% |
| ACAGGAACCAATGGGAATGA+AGG | + | chr6_3:79763420-79763439 | Msa0960380:intron | 45.0% | |
| CAGGAACCAATGGGAATGAA+GGG | + | chr6_3:79763421-79763440 | Msa0960380:intron | 45.0% | |
| AGACCATGGGAAGGGAAATA+TGG | + | chr6_3:79763479-79763498 | Msa0960380:intron | 45.0% | |
| AATCTGCTAGAAGCCATACC+AGG | + | chr6_3:79763533-79763552 | Msa0960380:intron | 45.0% | |
| ATCTGCTAGAAGCCATACCA+GGG | + | chr6_3:79763534-79763553 | Msa0960380:intron | 45.0% | |
| AAGCCATACCAGGGAATAGA+AGG | + | chr6_3:79763543-79763562 | Msa0960380:intron | 45.0% | |
| GTACCTTCTATTCCCTGGTA+TGG | - | chr6_3:79763549-79763568 | None:intergenic | 45.0% | |
| ! | TGACATATTTTCGACCGAGG+TGG | + | chr6_3:79763650-79763669 | Msa0960380:intron | 45.0% |
| GAGTCTATAGACTTAACGCC+AGG | + | chr6_3:79763892-79763911 | Msa0960380:intron | 45.0% | |
| ATGTTCCTTGCATTCGAACC+TGG | - | chr6_3:79763913-79763932 | None:intergenic | 45.0% | |
| CAACACTGATAATCACGGTC+TGG | + | chr6_3:79763960-79763979 | Msa0960380:intron | 45.0% | |
| ATGTTCGGAGATGCATCTTG+GGG | - | chr6_3:79764063-79764082 | None:intergenic | 45.0% | |
| GATGTTCGGAGATGCATCTT+GGG | - | chr6_3:79764064-79764083 | None:intergenic | 45.0% | |
| TGATGTTCGGAGATGCATCT+TGG | - | chr6_3:79764065-79764084 | None:intergenic | 45.0% | |
| GCATCTCCGAACATCATCTA+TGG | + | chr6_3:79764069-79764088 | Msa0960380:intron | 45.0% | |
| ATCAATCTCCTCTGGCAACA+AGG | + | chr6_3:79764192-79764211 | Msa0960380:intron | 45.0% | |
| AATTGTCACCTTGTTGCCAG+AGG | - | chr6_3:79764203-79764222 | None:intergenic | 45.0% | |
| AGATAGGTGTGTGTGTGTGT+GGG | - | chr6_3:79764490-79764509 | None:intergenic | 45.0% | |
| AAGATAGGTGTGTGTGTGTG+TGG | - | chr6_3:79764491-79764510 | None:intergenic | 45.0% | |
| TCATTGTAACCAAGGTAGCC+AGG | + | chr6_3:79764775-79764794 | Msa0960380:intron | 45.0% | |
| !! | ACTTTGCTCTGGGTCGTTTT+TGG | + | chr6_3:79764860-79764879 | Msa0960380:intron | 45.0% |
| !!! | GTCGTTTTTGGTCGATTTCG+TGG | + | chr6_3:79764872-79764891 | Msa0960380:intron | 45.0% |
| !!! | GTGGGCAGATCGAGTTTTTT+TGG | + | chr6_3:79764891-79764910 | Msa0960380:intron | 45.0% |
| ! | TATCTCTTGTTTGGGCCCTA+AGG | + | chr6_3:79765084-79765103 | Msa0960380:intron | 45.0% |
| TAAAGTCGGGGAACGTAACA+CGG | - | chr6_3:79765479-79765498 | None:intergenic | 45.0% | |
| TGGTGAAGGGATGTAAAGTC+GGG | - | chr6_3:79765492-79765511 | None:intergenic | 45.0% | |
| CTGGTGAAGGGATGTAAAGT+CGG | - | chr6_3:79765493-79765512 | None:intergenic | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | - | chr6_3:79765516-79765535 | None:intergenic | 45.0% | |
| AAGCAGATGCAAGAAGTTGC+TGG | + | chr6_3:79765869-79765888 | Msa0960380:CDS | 45.0% | |
| AGCAGATGCAAGAAGTTGCT+GGG | + | chr6_3:79765870-79765889 | Msa0960380:CDS | 45.0% | |
| AGCGTGGAGGTTATCTTCAT+GGG | + | chr6_3:79765894-79765913 | Msa0960380:CDS | 45.0% | |
| AGATGAAAGCAAGAGGTGAG+GGG | - | chr6_3:79765975-79765994 | None:intergenic | 45.0% | |
| CAGATGAAAGCAAGAGGTGA+GGG | - | chr6_3:79765976-79765995 | None:intergenic | 45.0% | |
| TAGTAGATCGTCACTGTCCA+AGG | - | chr6_3:79766055-79766074 | None:intergenic | 45.0% | |
| GGAGGTCAAAAGTGATCTAG+AGG | + | chr6_3:79766646-79766665 | Msa0960380:intron | 45.0% | |
| !! | CAGTCTATGCTCGTTTTTGC+TGG | + | chr6_3:79767121-79767140 | Msa0960380:intron | 45.0% |
| ACTTGCCGCTCTGTATCTAA+TGG | - | chr6_3:79767180-79767199 | None:intergenic | 45.0% | |
| GGCTCAACACGTAATGGTAA+AGG | - | chr6_3:79767230-79767249 | None:intergenic | 45.0% | |
| TTGAGCCAAAGCCAAAGAGT+GGG | + | chr6_3:79767243-79767262 | Msa0960380:CDS | 45.0% | |
| ! | TTACCCCTATGCCTGTTTTC+TGG | + | chr6_3:79767293-79767312 | Msa0960380:intron | 45.0% |
| GGCTTATTGCCTTCAAACCT+TGG | - | chr6_3:79767404-79767423 | None:intergenic | 45.0% | |
| GTCAGGACCAAAGAAAGTTG+AGG | + | chr6_3:79767502-79767521 | Msa0960380:CDS | 45.0% | |
| GATCGCTCCTCAACTTTCTT+TGG | - | chr6_3:79767512-79767531 | None:intergenic | 45.0% | |
| GTCTGGATCGAAGAAAGTAG+AGG | + | chr6_3:79767535-79767554 | Msa0960380:CDS | 45.0% | |
| !! | CCTAAGGTTGATAACTCTGC+CGG | + | chr6_3:79767596-79767615 | Msa0960380:CDS | 45.0% |
| !! | CTAAGGTTGATAACTCTGCC+GGG | + | chr6_3:79767597-79767616 | Msa0960380:CDS | 45.0% |
| !! | TAAGGTTGATAACTCTGCCG+GGG | + | chr6_3:79767598-79767617 | Msa0960380:CDS | 45.0% |
| ! | ATGATGCGCTTGATGGTAGA+TGG | + | chr6_3:79767668-79767687 | Msa0960380:three_prime_UTR | 45.0% |
| !!! | TTTTTTTTTTATATTTTTAC+TGG | - | chr6_3:79762915-79762934 | None:intergenic | 5.0% |
| ACCAATCTTACCGACCCCAA+AGG | + | chr6_3:79762476-79762495 | Msa0960380:CDS | 50.0% | |
| !! | ACCTTTGGGGTCGGTAAGAT+TGG | - | chr6_3:79762480-79762499 | None:intergenic | 50.0% |
| ! | GTTAGTGTCGGACACTGACA+TGG | + | chr6_3:79762965-79762984 | Msa0960380:intron | 50.0% |
| ! | TGTTTTGCAATCGCGGTTGG+CGG | + | chr6_3:79763057-79763076 | Msa0960380:intron | 50.0% |
| GGGAAAATTCTGCCACGCTA+TGG | + | chr6_3:79763078-79763097 | Msa0960380:intron | 50.0% | |
| CTGCACGATAGCGTCACTAT+TGG | + | chr6_3:79763177-79763196 | Msa0960380:intron | 50.0% | |
| !! | GGGGACTCTTTAAAGCGTTG+TGG | + | chr6_3:79763361-79763380 | Msa0960380:intron | 50.0% |
| ! | CATATTTTCGACCGAGGTGG+AGG | + | chr6_3:79763653-79763672 | Msa0960380:intron | 50.0% |
| TTAGAGTACAGCCTCCACCT+CGG | - | chr6_3:79763667-79763686 | None:intergenic | 50.0% | |
| GGCTGTACTCTAACTCAGTC+TGG | + | chr6_3:79763674-79763693 | Msa0960380:intron | 50.0% | |
| !! | GGGCCGTTGTTTTCTATGAG+AGG | - | chr6_3:79763745-79763764 | None:intergenic | 50.0% |
| TAACGCCAGGTTCGAATGCA+AGG | + | chr6_3:79763905-79763924 | Msa0960380:intron | 50.0% | |
| CGTTGTTGTCACTCTGGTCT+CGG | - | chr6_3:79763997-79764016 | None:intergenic | 50.0% | |
| !! | TCCCTGACTTAAGGTACTGC+TGG | + | chr6_3:79764115-79764134 | Msa0960380:intron | 50.0% |
| CCCAGCAGTACCTTAAGTCA+GGG | - | chr6_3:79764119-79764138 | None:intergenic | 50.0% | |
| !! | CCCTGACTTAAGGTACTGCT+GGG | + | chr6_3:79764116-79764135 | Msa0960380:intron | 50.0% |
| ACCCAGCAGTACCTTAAGTC+AGG | - | chr6_3:79764120-79764139 | None:intergenic | 50.0% | |
| !! | ACTTAAGGTACTGCTGGGTC+AGG | + | chr6_3:79764121-79764140 | Msa0960380:intron | 50.0% |
| !! | AAGAGCGTCGTTCAACGTCT+AGG | + | chr6_3:79764165-79764184 | Msa0960380:intron | 50.0% |
| ATCGTGCGATCCTACGAGAT+GGG | - | chr6_3:79764808-79764827 | None:intergenic | 50.0% | |
| CTATGGGGAAGAAGAGGACT+AGG | + | chr6_3:79765033-79765052 | Msa0960380:intron | 50.0% | |
| TGACCTGTGCATTCAGAGCA+AGG | - | chr6_3:79765252-79765271 | None:intergenic | 50.0% | |
| GGTGAAGGGATGTAAAGTCG+GGG | - | chr6_3:79765491-79765510 | None:intergenic | 50.0% | |
| ! | AGGTTCGATTGGCTGGTGAA+GGG | - | chr6_3:79765505-79765524 | None:intergenic | 50.0% |
| ! | TAGGTTCGATTGGCTGGTGA+AGG | - | chr6_3:79765506-79765525 | None:intergenic | 50.0% |
| TCAGGATCGAGTTCCTACGT+AGG | - | chr6_3:79765525-79765544 | None:intergenic | 50.0% | |
| GGGATCTTGGCTTCCTCTAT+TGG | + | chr6_3:79765835-79765854 | Msa0960380:CDS | 50.0% | |
| TCTTGGCTTCCTCTATTGGC+TGG | + | chr6_3:79765839-79765858 | Msa0960380:CDS | 50.0% | |
| GCAGATGCAAGAAGTTGCTG+GGG | + | chr6_3:79765871-79765890 | Msa0960380:CDS | 50.0% | |
| GAGCGTGGAGGTTATCTTCA+TGG | + | chr6_3:79765893-79765912 | Msa0960380:CDS | 50.0% | |
| GATGAAAGCAAGAGGTGAGG+GGG | - | chr6_3:79765974-79765993 | None:intergenic | 50.0% | |
| CCAGATGAAAGCAAGAGGTG+AGG | - | chr6_3:79765977-79765996 | None:intergenic | 50.0% | |
| CCTCACCTCTTGCTTTCATC+TGG | + | chr6_3:79765974-79765993 | Msa0960380:intron | 50.0% | |
| GAGCACCAGATGAAAGCAAG+AGG | - | chr6_3:79765982-79766001 | None:intergenic | 50.0% | |
| CAAGGAGCAAATGGAAGCTG+AGG | + | chr6_3:79766080-79766099 | Msa0960380:CDS | 50.0% | |
| TCCTGCGTCGCACTGAAAAA+CGG | + | chr6_3:79766118-79766137 | Msa0960380:CDS | 50.0% | |
| TATGATCCAGTAAGGGGAGG+TGG | + | chr6_3:79766365-79766384 | Msa0960380:intron | 50.0% | |
| TGTAAACCACCTCCCCTTAC+TGG | - | chr6_3:79766374-79766393 | None:intergenic | 50.0% | |
| ! | GGCTTTGGCTCAACACGTAA+TGG | - | chr6_3:79767236-79767255 | None:intergenic | 50.0% |
| GTTGAGCCAAAGCCAAAGAG+TGG | + | chr6_3:79767242-79767261 | Msa0960380:CDS | 50.0% | |
| ! | CTGATCCCACTCTTTGGCTT+TGG | - | chr6_3:79767251-79767270 | None:intergenic | 50.0% |
| AACAGGCATAGGGGTAAGCT+GGG | - | chr6_3:79767290-79767309 | None:intergenic | 50.0% | |
| AAACAGGCATAGGGGTAAGC+TGG | - | chr6_3:79767291-79767310 | None:intergenic | 50.0% | |
| CCTTCAAACCTTGGTCGCTT+AGG | - | chr6_3:79767395-79767414 | None:intergenic | 50.0% | |
| CCTAAGCGACCAAGGTTTGA+AGG | + | chr6_3:79767392-79767411 | Msa0960380:CDS | 50.0% | |
| GCATCACTAGGAGCTTGCAT+TGG | - | chr6_3:79767425-79767444 | None:intergenic | 50.0% | |
| GACAGCAAGCAGTGTTTGTC+AGG | + | chr6_3:79767485-79767504 | Msa0960380:CDS | 50.0% | |
| GTTGAGGAGCGATCTTTGTC+TGG | + | chr6_3:79767518-79767537 | Msa0960380:CDS | 50.0% | |
| TAGAGGAACACCCAGTGTCA+GGG | + | chr6_3:79767552-79767571 | Msa0960380:CDS | 50.0% | |
| CTTCATGCAACCCTGACACT+GGG | - | chr6_3:79767565-79767584 | None:intergenic | 50.0% | |
| CCGGCAGAGTTATCAACCTT+AGG | - | chr6_3:79767599-79767618 | None:intergenic | 50.0% | |
| !! | AAGGTTGATAACTCTGCCGG+GGG | + | chr6_3:79767599-79767618 | Msa0960380:CDS | 50.0% |
| CATCTGAGCTAGCATATGCC+AGG | - | chr6_3:79767634-79767653 | None:intergenic | 50.0% | |
| TGTCGGACACTGACATGGGT+TGG | + | chr6_3:79762970-79762989 | Msa0960380:intron | 55.0% | |
| ! | GTTTTGCAATCGCGGTTGGC+GGG | + | chr6_3:79763058-79763077 | Msa0960380:intron | 55.0% |
| GCTATTGCAGCTCCATAGCG+TGG | - | chr6_3:79763093-79763112 | None:intergenic | 55.0% | |
| GTCAGAGGGAGCAAGATGAG+TGG | + | chr6_3:79763804-79763823 | Msa0960380:intron | 55.0% | |
| GGAAGAAACCTGTCCGAACC+AGG | + | chr6_3:79764142-79764161 | Msa0960380:intron | 55.0% | |
| GAACGACGCTCTTCCTGGTT+CGG | - | chr6_3:79764158-79764177 | None:intergenic | 55.0% | |
| ACGTTGAACGACGCTCTTCC+TGG | - | chr6_3:79764163-79764182 | None:intergenic | 55.0% | |
| GGGTGGTTGGGGGATTAAGT+TGG | - | chr6_3:79764470-79764489 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGGGTGGTTG+GGG | - | chr6_3:79764481-79764500 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGGGTGGTT+GGG | - | chr6_3:79764482-79764501 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTGGGTGGT+TGG | - | chr6_3:79764483-79764502 | None:intergenic | 55.0% | |
| TAGGTGTGTGTGTGTGTGGG+TGG | - | chr6_3:79764487-79764506 | None:intergenic | 55.0% | |
| TACGAGATGGGACTCGATCC+TGG | - | chr6_3:79764796-79764815 | None:intergenic | 55.0% | |
| AGGATCGAGTCCCATCTCGT+AGG | + | chr6_3:79764795-79764814 | Msa0960380:intron | 55.0% | |
| GATCGTGCGATCCTACGAGA+TGG | - | chr6_3:79764809-79764828 | None:intergenic | 55.0% | |
| AGAGCAAAGTCGAAGCACGG+CGG | - | chr6_3:79764850-79764869 | None:intergenic | 55.0% | |
| CCCAGAGCAAAGTCGAAGCA+CGG | - | chr6_3:79764853-79764872 | None:intergenic | 55.0% | |
| CCGTGCTTCGACTTTGCTCT+GGG | + | chr6_3:79764850-79764869 | Msa0960380:intron | 55.0% | |
| TTTCTGCTGCGGCAGCTCTA+TGG | + | chr6_3:79765016-79765035 | Msa0960380:intron | 55.0% | |
| TTCTGCTGCGGCAGCTCTAT+GGG | + | chr6_3:79765017-79765036 | Msa0960380:intron | 55.0% | |
| GCAGCTCTATGGGGAAGAAG+AGG | + | chr6_3:79765027-79765046 | Msa0960380:intron | 55.0% | |
| CCTGTGCATTCAGAGCAAGG+TGG | - | chr6_3:79765249-79765268 | None:intergenic | 55.0% | |
| ! | CCACCTTGCTCTGAATGCAC+AGG | + | chr6_3:79765246-79765265 | Msa0960380:intron | 55.0% |
| CCTACGTAGGTTCGATTGGC+TGG | - | chr6_3:79765512-79765531 | None:intergenic | 55.0% | |
| CCAGCCAATCGAACCTACGT+AGG | + | chr6_3:79765509-79765528 | Msa0960380:intron | 55.0% | |
| ! | TTCTGATAACGTGCCCCGAC+AGG | + | chr6_3:79765814-79765833 | Msa0960380:CDS | 55.0% |
| ! | TCTGATAACGTGCCCCGACA+GGG | + | chr6_3:79765815-79765834 | Msa0960380:CDS | 55.0% |
| AGGAAGCCAAGATCCCTGTC+GGG | - | chr6_3:79765831-79765850 | None:intergenic | 55.0% | |
| GAGGAAGCCAAGATCCCTGT+CGG | - | chr6_3:79765832-79765851 | None:intergenic | 55.0% | |
| GGAGGTTATCTTCATGGGCG+AGG | + | chr6_3:79765899-79765918 | Msa0960380:CDS | 55.0% | |
| GGTTATCTTCATGGGCGAGG+CGG | + | chr6_3:79765902-79765921 | Msa0960380:CDS | 55.0% | |
| !! | GTTTTTCAGTGCGACGCAGG+AGG | - | chr6_3:79766119-79766138 | None:intergenic | 55.0% |
| CCTGCGTCGCACTGAAAAAC+GGG | + | chr6_3:79766119-79766138 | Msa0960380:CDS | 55.0% | |
| ACAGGCATAGGGGTAAGCTG+GGG | - | chr6_3:79767289-79767308 | None:intergenic | 55.0% | |
| GTAGAGGAACACCCAGTGTC+AGG | + | chr6_3:79767551-79767570 | Msa0960380:CDS | 55.0% | |
| CCTTCATGCAACCCTGACAC+TGG | - | chr6_3:79767566-79767585 | None:intergenic | 55.0% | |
| CCAGTGTCAGGGTTGCATGA+AGG | + | chr6_3:79767563-79767582 | Msa0960380:CDS | 55.0% | |
| AACTCTGCCGGGGGATTACT+AGG | + | chr6_3:79767608-79767627 | Msa0960380:CDS | 55.0% | |
| !! | ACGCTCTTCCTGGTTCGGAC+AGG | - | chr6_3:79764153-79764172 | None:intergenic | 60.0% |
| GTGTGTGTGTGGGTGGTTGG+GGG | - | chr6_3:79764480-79764499 | None:intergenic | 60.0% | |
| GGACTCGATCCTGGCTACCT+TGG | - | chr6_3:79764787-79764806 | None:intergenic | 60.0% | |
| AAAGTCGAAGCACGGCGGAG+TGG | - | chr6_3:79764845-79764864 | None:intergenic | 60.0% | |
| GCCGTGCTTCGACTTTGCTC+TGG | + | chr6_3:79764849-79764868 | Msa0960380:intron | 60.0% | |
| TCTGCTGCGGCAGCTCTATG+GGG | + | chr6_3:79765018-79765037 | Msa0960380:intron | 60.0% | |
| GGAAGCCAAGATCCCTGTCG+GGG | - | chr6_3:79765830-79765849 | None:intergenic | 60.0% | |
| CAAGAAGTTGCTGGGGAGCG+TGG | + | chr6_3:79765878-79765897 | Msa0960380:CDS | 60.0% | |
| !! | CCCGTTTTTCAGTGCGACGC+AGG | - | chr6_3:79766122-79766141 | None:intergenic | 60.0% |
| CAGCAGCGAACACAGACTCC+AGG | - | chr6_3:79766249-79766268 | None:intergenic | 60.0% | |
| TGCCAGGCCTAGTAATCCCC+CGG | - | chr6_3:79767618-79767637 | None:intergenic | 60.0% | |
| ACGTGCCCCGACAGGGATCT+TGG | + | chr6_3:79765822-79765841 | Msa0960380:CDS | 65.0% | |
| ! | GAAGTTGCTGGGGAGCGTGG+AGG | + | chr6_3:79765881-79765900 | Msa0960380:CDS | 65.0% |
| GGCATAGGGGTAAGCTGGGG+TGG | - | chr6_3:79767286-79767305 | None:intergenic | 65.0% | |
| TGCCGGGGGATTACTAGGCC+TGG | + | chr6_3:79767613-79767632 | Msa0960380:CDS | 65.0% | |
| GAAGCACGGCGGAGTGGCTG+AGG | - | chr6_3:79764839-79764858 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 79762271 | 79767933 | 79762271 | ID=Msa0960380;Name=Msa0960380 |
| chr6_3 | mRNA | 79762271 | 79767933 | 79762271 | ID=Msa0960380-mRNA-1;Parent=Msa0960380;Name=Msa0960380-mRNA-1;_AED=0.21;_eAED=0.24;_QI=178|0.4|0.5|1|0.8|0.83|6|269|310 |
| chr6_3 | exon | 79762271 | 79762497 | 79762271 | ID=Msa0960380-mRNA-1:exon:14234;Parent=Msa0960380-mRNA-1 |
| chr6_3 | exon | 79762610 | 79762680 | 79762610 | ID=Msa0960380-mRNA-1:exon:14235;Parent=Msa0960380-mRNA-1 |
| chr6_3 | exon | 79765741 | 79765923 | 79765741 | ID=Msa0960380-mRNA-1:exon:14236;Parent=Msa0960380-mRNA-1 |
| chr6_3 | exon | 79766039 | 79766271 | 79766039 | ID=Msa0960380-mRNA-1:exon:14237;Parent=Msa0960380-mRNA-1 |
| chr6_3 | exon | 79767184 | 79767270 | 79767184 | ID=Msa0960380-mRNA-1:exon:14238;Parent=Msa0960380-mRNA-1 |
| chr6_3 | exon | 79767355 | 79767933 | 79767355 | ID=Msa0960380-mRNA-1:exon:14239;Parent=Msa0960380-mRNA-1 |
| chr6_3 | five_prime_UTR | 79762271 | 79762448 | 79762271 | ID=Msa0960380-mRNA-1:five_prime_utr;Parent=Msa0960380-mRNA-1 |
| chr6_3 | CDS | 79762449 | 79762497 | 79762449 | ID=Msa0960380-mRNA-1:cds;Parent=Msa0960380-mRNA-1 |
| chr6_3 | CDS | 79762610 | 79762680 | 79762610 | ID=Msa0960380-mRNA-1:cds;Parent=Msa0960380-mRNA-1 |
| chr6_3 | CDS | 79765741 | 79765923 | 79765741 | ID=Msa0960380-mRNA-1:cds;Parent=Msa0960380-mRNA-1 |
| chr6_3 | CDS | 79766039 | 79766271 | 79766039 | ID=Msa0960380-mRNA-1:cds;Parent=Msa0960380-mRNA-1 |
| chr6_3 | CDS | 79767184 | 79767270 | 79767184 | ID=Msa0960380-mRNA-1:cds;Parent=Msa0960380-mRNA-1 |
| chr6_3 | CDS | 79767355 | 79767664 | 79767355 | ID=Msa0960380-mRNA-1:cds;Parent=Msa0960380-mRNA-1 |
| chr6_3 | three_prime_UTR | 79767665 | 79767933 | 79767665 | ID=Msa0960380-mRNA-1:three_prime_utr;Parent=Msa0960380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
