Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960550 | XP_013452656.1 | 98.870 | 354 | 4 | 0 | 1 | 354 | 1 | 354 | 0.0 | 732 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960550 | sp|Q8VXX4|RFC3_ARATH | 83.898 | 354 | 57 | 0 | 1 | 354 | 1 | 354 | 0.0 | 646 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0921760 | Msa0960550 | 0.874849 | 4.895667e-68 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960550 | MtrunA17_Chr6g0478631 | 98.870 | 354 | 4 | 0 | 1 | 354 | 1 | 354 | 0.0 | 732 |
Msa0960550 | MtrunA17_Chr6g0460841 | 96.610 | 354 | 12 | 0 | 1 | 354 | 1 | 354 | 0.0 | 721 |
Msa0960550 | MtrunA17_Chr5g0404521 | 34.066 | 273 | 161 | 4 | 2 | 269 | 413 | 671 | 7.58e-50 | 177 |
Msa0960550 | MtrunA17_Chr3g0145801 | 30.319 | 376 | 228 | 8 | 2 | 347 | 421 | 792 | 4.80e-46 | 167 |
Msa0960550 | MtrunA17_Chr3g0124791 | 25.072 | 347 | 217 | 6 | 2 | 341 | 33 | 343 | 1.54e-33 | 127 |
Msa0960550 | MtrunA17_Chr3g0125031 | 32.218 | 239 | 125 | 4 | 3 | 234 | 11 | 219 | 3.46e-33 | 125 |
Msa0960550 | MtrunA17_Chr4g0057341 | 30.556 | 216 | 118 | 4 | 3 | 217 | 17 | 201 | 1.14e-24 | 102 |
Msa0960550 | MtrunA17_Chr5g0404541 | 43.750 | 64 | 36 | 0 | 283 | 346 | 2 | 65 | 9.20e-13 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0960550 | AT5G27740.1 | 83.898 | 354 | 57 | 0 | 1 | 354 | 1 | 354 | 0.0 | 646 |
Msa0960550 | AT1G21690.1 | 33.333 | 234 | 119 | 4 | 3 | 229 | 11 | 214 | 8.77e-33 | 125 |
Msa0960550 | AT1G21690.3 | 32.636 | 239 | 124 | 4 | 3 | 234 | 11 | 219 | 1.09e-32 | 125 |
Msa0960550 | AT1G21690.4 | 32.051 | 234 | 115 | 4 | 3 | 229 | 11 | 207 | 4.20e-30 | 117 |
Msa0960550 | AT1G77470.1 | 27.347 | 245 | 148 | 3 | 3 | 247 | 41 | 255 | 2.28e-29 | 116 |
Msa0960550 | AT1G21690.2 | 32.636 | 239 | 112 | 6 | 3 | 234 | 11 | 207 | 2.69e-29 | 115 |
Msa0960550 | AT1G63160.1 | 27.126 | 247 | 146 | 6 | 3 | 248 | 17 | 230 | 7.10e-23 | 98.2 |
Find 103 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGCAATAGTTTCTCAATTT+TGG | 0.120613 | 6_3:-79990537 | Msa0960550:five_prime_UTR |
TCCAAGCGATGCAGGCTTTC+AGG | 0.177682 | 6_3:-79988076 | Msa0960550:CDS |
CATAACACTGTCGAGGGTTT+TGG | 0.212335 | 6_3:+79989611 | None:intergenic |
AGAAATCAAATCGGAATTTA+AGG | 0.217343 | 6_3:-79986259 | Msa0960550:CDS |
TGTCCTCATTTGCTGTTCTA+TGG | 0.252413 | 6_3:-79989432 | Msa0960550:CDS |
TGCTCAAAATCTCAAGAAAT+TGG | 0.257130 | 6_3:-79989574 | Msa0960550:intron |
ATGGAAGATTTCTGATGTTT+TGG | 0.259387 | 6_3:-79984591 | Msa0960550:three_prime_UTR |
TTCAGGTGAAGGTGGAAAAT+AGG | 0.275227 | 6_3:-79989046 | Msa0960550:intron |
CGGCACCGGGTCCAAACATT+TGG | 0.299333 | 6_3:+79989364 | None:intergenic |
TCTCTCATCTTCTCAACTTA+AGG | 0.307732 | 6_3:-79984646 | Msa0960550:three_prime_UTR |
TTTCTTCCCTTTAGTATCAA+TGG | 0.323241 | 6_3:+79988005 | None:intergenic |
AAAGGGAAGAAAGGATTTAA+AGG | 0.324156 | 6_3:-79987994 | Msa0960550:intron |
GCTCTTCTCCGCCAAATGTT+TGG | 0.325475 | 6_3:-79989375 | Msa0960550:CDS |
GCTGCAACTTCCTTCTAGTT+TGG | 0.326964 | 6_3:-79986297 | Msa0960550:CDS |
CTGCGATTCTGCGACGGTCT+AGG | 0.328997 | 6_3:+79990425 | None:intergenic |
TTCTTCCCTTTAGTATCAAT+GGG | 0.348124 | 6_3:+79988006 | None:intergenic |
TCAGGTGAAGGTGGAAAATA+GGG | 0.353576 | 6_3:-79989045 | Msa0960550:intron |
TTATGAGCTATTGAGGAAAC+TGG | 0.357086 | 6_3:-79985643 | Msa0960550:CDS |
CTATACATTGGCAGCATTTG+TGG | 0.358356 | 6_3:-79984796 | Msa0960550:intron |
GCAAGTCTCAAATGACAATA+TGG | 0.375769 | 6_3:+79986232 | None:intergenic |
TTGTTCTGCGGAGAGAATGC+TGG | 0.394620 | 6_3:+79987571 | None:intergenic |
TCCTGAAAGCCTGCATCGCT+TGG | 0.402265 | 6_3:+79988075 | None:intergenic |
CTATTTACCTGTTCTTCACT+TGG | 0.411342 | 6_3:+79987444 | None:intergenic |
TATACTCCTCCCAGTCCATT+GGG | 0.413295 | 6_3:+79986054 | None:intergenic |
TGAAGGAACAGAGCCCAAAA+AGG | 0.416911 | 6_3:-79986007 | Msa0960550:intron |
GACTTCTTTATGAGCTATTG+AGG | 0.419698 | 6_3:-79985650 | Msa0960550:CDS |
AATACAATAAAATTGTATCC+TGG | 0.422379 | 6_3:+79984700 | None:intergenic |
GAGAGTGAGCAGTCGAGCTT+CGG | 0.427198 | 6_3:+79990368 | None:intergenic |
TCAAGAAATAATCAAAGAAA+TGG | 0.433507 | 6_3:-79988040 | Msa0960550:CDS |
TCCTTCCTCATCGCAACATT+CGG | 0.436381 | 6_3:-79984750 | Msa0960550:CDS |
CAAAACCCTCGACAGTGTTA+TGG | 0.439317 | 6_3:-79989610 | Msa0960550:CDS |
TGCGATTCTGCGACGGTCTA+GGG | 0.439561 | 6_3:+79990426 | None:intergenic |
TAATGCACCAAGTGAAGAAC+AGG | 0.440498 | 6_3:-79987451 | Msa0960550:intron |
GTTTGGACCCGGTGCCGAAA+AGG | 0.441219 | 6_3:-79989358 | Msa0960550:intron |
CAGTTCATTGGTAAGAAAGA+AGG | 0.442426 | 6_3:-79986320 | Msa0960550:CDS |
TTGCTGTTCTATGGTCCATC+AGG | 0.446874 | 6_3:-79989423 | Msa0960550:CDS |
CAATGGTGCTTTGCTTTCCC+AGG | 0.449651 | 6_3:-79984718 | Msa0960550:three_prime_UTR |
GGAAAATAGGGCTTGGAAAG+TGG | 0.454758 | 6_3:-79989033 | Msa0960550:CDS |
ATGCGAGCAGCCAAACTAGA+AGG | 0.460248 | 6_3:+79986287 | None:intergenic |
AATTCGCACATTAAGACAAC+GGG | 0.461988 | 6_3:+79987473 | None:intergenic |
TTTAGGTTGTTTCAAGTTCG+AGG | 0.467965 | 6_3:-79985817 | Msa0960550:intron |
TGCTCCACTCCATCCGCCGC+TGG | 0.470316 | 6_3:-79990335 | Msa0960550:intron |
AATAGACCCATTGATACTAA+AGG | 0.470695 | 6_3:-79988012 | Msa0960550:CDS |
ATACAATAAAATTGTATCCT+GGG | 0.471662 | 6_3:+79984701 | None:intergenic |
CGGATGGAGTGGAGCAGAGA+TGG | 0.484218 | 6_3:+79990342 | None:intergenic |
ATAGACCCATTGATACTAAA+GGG | 0.485089 | 6_3:-79988011 | Msa0960550:CDS |
ATTGATACTAAAGGGAAGAA+AGG | 0.491720 | 6_3:-79988003 | Msa0960550:CDS |
CTCCGCCAAATGTTTGGACC+CGG | 0.492853 | 6_3:-79989369 | Msa0960550:CDS |
ATATACTCCTCCCAGTCCAT+TGG | 0.499233 | 6_3:+79986053 | None:intergenic |
ATTGTTTGCTTGTCGGTGAA+AGG | 0.508946 | 6_3:+79986080 | None:intergenic |
AGTGAGCAGTCGAGCTTCGG+TGG | 0.509560 | 6_3:+79990371 | None:intergenic |
TAAAGAGAGCAAAGATGTTG+TGG | 0.510082 | 6_3:-79989650 | Msa0960550:exon |
AAAGAGAGCAAAGATGTTGT+GGG | 0.510264 | 6_3:-79989649 | Msa0960550:exon |
GCTGACCAATTGCATTCCTC+CGG | 0.512269 | 6_3:-79985779 | Msa0960550:CDS |
TGAAGGTGGAAAATAGGGCT+TGG | 0.512888 | 6_3:-79989040 | Msa0960550:CDS |
TTGAAGAAAGAAGCAGAAGA+AGG | 0.513503 | 6_3:-79989673 | Msa0960550:five_prime_UTR |
AGGCAAGAAAACACTAATCA+TGG | 0.515883 | 6_3:-79989397 | Msa0960550:CDS |
GATCTCCGGAGGAATGCAAT+TGG | 0.520414 | 6_3:+79985774 | None:intergenic |
TTTACCTTCAAAATGATCTC+CGG | 0.522303 | 6_3:+79985760 | None:intergenic |
TGAAGCATGAAATCTGCCAT+TGG | 0.524375 | 6_3:-79985611 | Msa0960550:CDS |
CGGAGGAGCTCCGAGGTGGA+TGG | 0.531079 | 6_3:+79990396 | None:intergenic |
AGTTCATTGGTAAGAAAGAA+GGG | 0.531136 | 6_3:-79986319 | Msa0960550:CDS |
TGTTCTGCGGAGAGAATGCT+GGG | 0.531450 | 6_3:+79987572 | None:intergenic |
GAAGCATGAAATCTGCCATT+GGG | 0.532158 | 6_3:-79985610 | Msa0960550:CDS |
GCACATTAAGACAACGGGAG+CGG | 0.533938 | 6_3:+79987478 | None:intergenic |
CACCGGGTCCAAACATTTGG+CGG | 0.535929 | 6_3:+79989367 | None:intergenic |
CAGGAGCATAGGATGCGCCT+TGG | 0.541208 | 6_3:-79985337 | Msa0960550:CDS |
CCTCATTTAACCAGGAGCAT+AGG | 0.541849 | 6_3:-79985348 | Msa0960550:intron |
GAAATGACTCCAAGCGATGC+AGG | 0.543849 | 6_3:-79988084 | Msa0960550:CDS |
TTCTATGGTCCATCAGGCGC+AGG | 0.544328 | 6_3:-79989417 | Msa0960550:CDS |
GGGTATTTACCAGCGGCGGA+TGG | 0.548055 | 6_3:+79990326 | None:intergenic |
AATTGCATCTGACATAATGA+AGG | 0.551340 | 6_3:-79986024 | Msa0960550:CDS |
GCAGTCGAGCTTCGGTGGAA+CGG | 0.558506 | 6_3:+79990376 | None:intergenic |
TATGCAGACTACAATCATCA+TGG | 0.563605 | 6_3:-79984610 | Msa0960550:three_prime_UTR |
GCATTCTCTCCGCAGAACAA+TGG | 0.564370 | 6_3:-79987568 | Msa0960550:CDS |
CGCTTGGAGTCATTTCGATG+TGG | 0.565712 | 6_3:+79988091 | None:intergenic |
GGACCATAGAACAGCAAATG+AGG | 0.571639 | 6_3:+79989429 | None:intergenic |
TTTACCAGCGGCGGATGGAG+TGG | 0.572690 | 6_3:+79990331 | None:intergenic |
GCATAGCAGAGAAATCAAAT+CGG | 0.583422 | 6_3:-79986268 | Msa0960550:CDS |
AATCAAATCGGAATTTAAGG+AGG | 0.587176 | 6_3:-79986256 | Msa0960550:CDS |
CATATGTGGGAATGAGAAGG+TGG | 0.593706 | 6_3:+79984503 | None:intergenic |
TGTATTTCTCCATTGTTCTG+CGG | 0.594797 | 6_3:+79987559 | None:intergenic |
CTGTGACTGCGATTCTGCGA+CGG | 0.607491 | 6_3:+79990419 | None:intergenic |
GTTGATGTTTCAGGTGAAGG+TGG | 0.620590 | 6_3:-79989054 | Msa0960550:intron |
GTCGAGCTTCGGTGGAACGG+AGG | 0.622423 | 6_3:+79990379 | None:intergenic |
GTGAACCATAACACTGTCGA+GGG | 0.625900 | 6_3:+79989605 | None:intergenic |
GTTTGGGTATTTACCAGCGG+CGG | 0.626387 | 6_3:+79990322 | None:intergenic |
ACCTTCAAAATGATCTCCGG+AGG | 0.628271 | 6_3:+79985763 | None:intergenic |
ATCAAATCGGAATTTAAGGA+GGG | 0.630327 | 6_3:-79986255 | Msa0960550:CDS |
GCCGAATGTTGCGATGAGGA+AGG | 0.630554 | 6_3:+79984749 | None:intergenic |
TTACATAATATGCTGCCCAA+TGG | 0.630713 | 6_3:+79985595 | None:intergenic |
GGAACGGAGGAGCTCCGAGG+TGG | 0.641257 | 6_3:+79990392 | None:intergenic |
TACTCCTCCCAGTCCATTGG+GGG | 0.645004 | 6_3:+79986056 | None:intergenic |
ATACTCCTCCCAGTCCATTG+GGG | 0.647707 | 6_3:+79986055 | None:intergenic |
TAATTCGCACATTAAGACAA+CGG | 0.648193 | 6_3:+79987472 | None:intergenic |
TGTGAACCATAACACTGTCG+AGG | 0.649165 | 6_3:+79989604 | None:intergenic |
TTCAGCCGAATGTTGCGATG+AGG | 0.657182 | 6_3:+79984745 | None:intergenic |
GCAGTCACAGCCATCCACCT+CGG | 0.659169 | 6_3:-79990406 | Msa0960550:five_prime_UTR |
GGTGGAACGGAGGAGCTCCG+AGG | 0.666148 | 6_3:+79990389 | None:intergenic |
ACATTCGGCTGAAGAAACAA+TGG | 0.670874 | 6_3:-79984735 | Msa0960550:exon |
ATATGTGGGAATGAGAAGGT+GGG | 0.682689 | 6_3:+79984504 | None:intergenic |
GTGGAGATTACTGTTGGACA+CGG | 0.686923 | 6_3:+79986210 | None:intergenic |
AACCATATGTGGGAATGAGA+AGG | 0.704061 | 6_3:+79984500 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATTATTGAAAAAGAAAA+AGG | + | chr6_3:79984581-79984600 | None:intergenic | 10.0% |
!! | TAAAAATTGAGTTAAAAAAA+GGG | + | chr6_3:79984922-79984941 | None:intergenic | 10.0% |
!!! | TATTTTAAGATAATAAAAGA+AGG | - | chr6_3:79987134-79987153 | Msa0960550:intron | 10.0% |
!!! | ATATTTTATTTTCTATACAT+TGG | - | chr6_3:79990259-79990278 | Msa0960550:intron | 10.0% |
!!! | AATTTTATTGTATTAATGAT+TGG | - | chr6_3:79990376-79990395 | Msa0960550:five_prime_UTR | 10.0% |
!! | AAAAATTGAAAAGAAAGTTT+GGG | + | chr6_3:79984764-79984783 | None:intergenic | 15.0% |
!! | AAAAAATTGAAAAGAAAGTT+TGG | + | chr6_3:79984765-79984784 | None:intergenic | 15.0% |
!! | CTAAAAATTGAGTTAAAAAA+AGG | + | chr6_3:79984923-79984942 | None:intergenic | 15.0% |
!!! | AAAAGTTTCAAATTTTTGTT+TGG | - | chr6_3:79985578-79985597 | Msa0960550:intron | 15.0% |
!! | ATAATATGCTATTATACTTT+AGG | - | chr6_3:79989233-79989252 | Msa0960550:intron | 15.0% |
!! | TGAAAAATAAGAAGTAAAAA+TGG | + | chr6_3:79989671-79989690 | None:intergenic | 15.0% |
!! | AGTCTAGAAAAACAAAAAAA+TGG | - | chr6_3:79984508-79984527 | Msa0960550:three_prime_UTR | 20.0% |
!! | AAAGAAAAAGGAAAGTTAAT+AGG | + | chr6_3:79984569-79984588 | None:intergenic | 20.0% |
!! | AACAATAAAATACAAAACAC+TGG | + | chr6_3:79985298-79985317 | None:intergenic | 20.0% |
!!! | TTGATTGATTCAAATACAAA+AGG | + | chr6_3:79985538-79985557 | None:intergenic | 20.0% |
!!! | TTCTAAAAAAAAGACCTTTT+CGG | + | chr6_3:79985726-79985745 | None:intergenic | 20.0% |
!!! | TCTGAATTTTGAAAGAATTT+TGG | - | chr6_3:79985794-79985813 | Msa0960550:CDS | 20.0% |
!!! | CATCTAACTAAAATTACTTT+TGG | + | chr6_3:79985854-79985873 | None:intergenic | 20.0% |
!! | TTGTTGCAAAGTTTATTTAA+CGG | - | chr6_3:79986100-79986119 | Msa0960550:intron | 20.0% |
!!! | TTTTGTAAAAAACAAATCAG+TGG | + | chr6_3:79986288-79986307 | None:intergenic | 20.0% |
!!! | TGTTGTTTGTAAGAATAAAT+AGG | - | chr6_3:79986436-79986455 | Msa0960550:intron | 20.0% |
!! | TGTAAGAATAAATAGGAAAA+AGG | - | chr6_3:79986443-79986462 | Msa0960550:intron | 20.0% |
!! | TGGTTTCAGAATAATTATAA+AGG | + | chr6_3:79986589-79986608 | None:intergenic | 20.0% |
!! | TCAAGAAATAATCAAAGAAA+TGG | - | chr6_3:79987027-79987046 | Msa0960550:intron | 20.0% |
!! | TTCAAAACATGAAAACTATA+AGG | - | chr6_3:79988000-79988019 | Msa0960550:CDS | 20.0% |
!!! | GTTCTTAAATTTTGATGTTT+TGG | + | chr6_3:79988050-79988069 | None:intergenic | 20.0% |
!!! | CTAGAAAAGCATTTTATAAT+CGG | + | chr6_3:79988486-79988505 | None:intergenic | 20.0% |
!! | GATCATCTTTATTGAATATT+TGG | - | chr6_3:79988694-79988713 | Msa0960550:intron | 20.0% |
!!! | ACTTCTTATTTTTCAAAGTA+AGG | - | chr6_3:79989676-79989695 | Msa0960550:five_prime_UTR | 20.0% |
!!! | GTATTCTTTATAATTTGCAA+TGG | + | chr6_3:79989847-79989866 | None:intergenic | 20.0% |
!!! | CTACTTATTTTCATTTACTT+TGG | + | chr6_3:79989916-79989935 | None:intergenic | 20.0% |
!! | TTTGTAAGTAAATCATAGTA+TGG | + | chr6_3:79989972-79989991 | None:intergenic | 20.0% |
!! | TTTGATAGATTAAACATGTT+AGG | - | chr6_3:79990006-79990025 | Msa0960550:intron | 20.0% |
!! | TTGATAGATTAAACATGTTA+GGG | - | chr6_3:79990007-79990026 | Msa0960550:intron | 20.0% |
!!! | TCTAGAGTAAAAAAAATAGA+GGG | + | chr6_3:79990154-79990173 | None:intergenic | 20.0% |
!!! | TTCTAGAGTAAAAAAAATAG+AGG | + | chr6_3:79990155-79990174 | None:intergenic | 20.0% |
!! | ATATATTGATATGTAAGTCT+TGG | - | chr6_3:79990210-79990229 | Msa0960550:intron | 20.0% |
!! | TATATTGATATGTAAGTCTT+GGG | - | chr6_3:79990211-79990230 | Msa0960550:intron | 20.0% |
!! | ATACAATAAAATTGTATCCT+GGG | + | chr6_3:79990369-79990388 | None:intergenic | 20.0% |
!! | AATACAATAAAATTGTATCC+TGG | + | chr6_3:79990370-79990389 | None:intergenic | 20.0% |
! | GATTTAAGCTGTTAATGAAA+AGG | - | chr6_3:79984865-79984884 | Msa0960550:intron | 25.0% |
!!! | ATTGATTTTGTCTGATTTCA+TGG | - | chr6_3:79985128-79985147 | Msa0960550:intron | 25.0% |
!! | TTGATTTTGTCTGATTTCAT+GGG | - | chr6_3:79985129-79985148 | Msa0960550:intron | 25.0% |
! | TGAAATGAGTGACAAAAAAA+GGG | + | chr6_3:79985749-79985768 | None:intergenic | 25.0% |
!!! | TGTATCTTTGAGTTTTTGAT+TGG | - | chr6_3:79985908-79985927 | Msa0960550:intron | 25.0% |
! | TCAACAAAGACAATTTAGAA+TGG | + | chr6_3:79985998-79986017 | None:intergenic | 25.0% |
! | AGTGGTCAATAATAATATTC+AGG | + | chr6_3:79986192-79986211 | None:intergenic | 25.0% |
! | ACTCTTCTCTATCAATATAT+TGG | + | chr6_3:79986230-79986249 | None:intergenic | 25.0% |
! | ATTTCAGTAAACATTGCTAT+AGG | - | chr6_3:79986321-79986340 | Msa0960550:CDS | 25.0% |
! | CGTATTATACTTATGAAATG+TGG | - | chr6_3:79986678-79986697 | Msa0960550:intron | 25.0% |
! | ATACTTATGAAATGTGGAAT+TGG | - | chr6_3:79986684-79986703 | Msa0960550:intron | 25.0% |
! | TACTTATGAAATGTGGAATT+GGG | - | chr6_3:79986685-79986704 | Msa0960550:intron | 25.0% |
!!! | GTTTATTTTTTCTGAGTAGA+AGG | + | chr6_3:79986755-79986774 | None:intergenic | 25.0% |
! | ACATAATATTGGAATTTCCA+AGG | + | chr6_3:79986820-79986839 | None:intergenic | 25.0% |
! | AATAAAAGAAGGAATCTTCA+TGG | - | chr6_3:79987145-79987164 | Msa0960550:intron | 25.0% |
! | GGAAAAAAATTCCAAAACAT+AGG | + | chr6_3:79987694-79987713 | None:intergenic | 25.0% |
! | CTCAAATCATGAAAACTATA+AGG | - | chr6_3:79987915-79987934 | Msa0960550:intron | 25.0% |
! | AAAACTATAAGGAAACCATA+CGG | - | chr6_3:79987926-79987945 | Msa0960550:intron | 25.0% |
!!! | GTTCTTGAATTTTGATGTTT+TGG | + | chr6_3:79987965-79987984 | None:intergenic | 25.0% |
! | AAACATCAAAATTCAAGAAC+TGG | - | chr6_3:79987965-79987984 | Msa0960550:intron | 25.0% |
! | AAAACTATAAGGAAACCATA+CGG | - | chr6_3:79987926-79987945 | Msa0960550:intron | 25.0% |
! | AAAATGCAGATTAAGAAACT+TGG | - | chr6_3:79988443-79988462 | Msa0960550:intron | 25.0% |
! | AGAAATCAAATCGGAATTTA+AGG | - | chr6_3:79988808-79988827 | Msa0960550:intron | 25.0% |
!! | TATCAAAAGCAAACCTTTTT+GGG | + | chr6_3:79989076-79989095 | None:intergenic | 25.0% |
!! | CATTAACTAGTCTAATATCA+AGG | + | chr6_3:79989630-79989649 | None:intergenic | 25.0% |
!! | CTTGATATTAGACTAGTTAA+TGG | - | chr6_3:79989628-79989647 | Msa0960550:CDS | 25.0% |
!! | ATCTGAATGTTTGAAATAGT+TGG | - | chr6_3:79989787-79989806 | Msa0960550:intron | 25.0% |
!! | TCTGAATGTTTGAAATAGTT+GGG | - | chr6_3:79989788-79989807 | Msa0960550:intron | 25.0% |
! | TGGACAAATATTACAAATGT+TGG | - | chr6_3:79990036-79990055 | Msa0960550:intron | 25.0% |
! | GGACAAATATTACAAATGTT+GGG | - | chr6_3:79990037-79990056 | Msa0960550:intron | 25.0% |
!! | TATAGCTATTGCTTTATTCA+AGG | - | chr6_3:79990180-79990199 | Msa0960550:intron | 25.0% |
! | CAATAGTTTCTCAATTTTGG+CGG | - | chr6_3:79984533-79984552 | Msa0960550:three_prime_UTR | 30.0% |
!! | AATAGTTTCTCAATTTTGGC+GGG | - | chr6_3:79984534-79984553 | Msa0960550:three_prime_UTR | 30.0% |
! | TGATTTTGTCTGATTTCATG+GGG | - | chr6_3:79985130-79985149 | Msa0960550:intron | 30.0% |
TGCTCAAAATCTCAAGAAAT+TGG | - | chr6_3:79985493-79985512 | Msa0960550:intron | 30.0% | |
GTGAAATGAGTGACAAAAAA+AGG | + | chr6_3:79985750-79985769 | None:intergenic | 30.0% | |
ACACAAGGATTGTATTCTTA+GGG | + | chr6_3:79985826-79985845 | None:intergenic | 30.0% | |
ATTGTCTTTGTTGATGTTTC+AGG | - | chr6_3:79986004-79986023 | Msa0960550:intron | 30.0% | |
! | AAGAAAAGGGAAGTATGAAA+AGG | + | chr6_3:79986074-79986093 | None:intergenic | 30.0% |
GCAACAAAACAGAAAGAAAA+GGG | + | chr6_3:79986087-79986106 | None:intergenic | 30.0% | |
TGCAACAAAACAGAAAGAAA+AGG | + | chr6_3:79986088-79986107 | None:intergenic | 30.0% | |
AAGCACTCTAACATTTGTAT+AGG | - | chr6_3:79986123-79986142 | Msa0960550:intron | 30.0% | |
CTCTAACATTTGTATAGGTT+AGG | - | chr6_3:79986128-79986147 | Msa0960550:intron | 30.0% | |
AATATCATTGTCTTGATCCT+TGG | - | chr6_3:79986800-79986819 | Msa0960550:intron | 30.0% | |
AAATGCAGTGCACATAATAT+TGG | + | chr6_3:79986831-79986850 | None:intergenic | 30.0% | |
! | TGAATCATTGGTGTCTTATT+TGG | - | chr6_3:79986862-79986881 | Msa0960550:intron | 30.0% |
AATAGACCCATTGATACTAA+AGG | - | chr6_3:79987055-79987074 | Msa0960550:intron | 30.0% | |
ATAGACCCATTGATACTAAA+GGG | - | chr6_3:79987056-79987075 | Msa0960550:intron | 30.0% | |
TTCTTCCCTTTAGTATCAAT+GGG | + | chr6_3:79987064-79987083 | None:intergenic | 30.0% | |
TTTCTTCCCTTTAGTATCAA+TGG | + | chr6_3:79987065-79987084 | None:intergenic | 30.0% | |
ATTGATACTAAAGGGAAGAA+AGG | - | chr6_3:79987064-79987083 | Msa0960550:intron | 30.0% | |
AAAGGGAAGAAAGGATTTAA+AGG | - | chr6_3:79987073-79987092 | Msa0960550:intron | 30.0% | |
AGAAAGGATTTAAAGGTAAC+CGG | - | chr6_3:79987080-79987099 | Msa0960550:intron | 30.0% | |
AGTTTAACAACAAAAACAGC+CGG | + | chr6_3:79987102-79987121 | None:intergenic | 30.0% | |
TGACTGTGTATAATGATGTT+TGG | - | chr6_3:79987243-79987262 | Msa0960550:intron | 30.0% | |
TTTACCTGTGTAATGCTTTA+AGG | - | chr6_3:79987281-79987300 | Msa0960550:intron | 30.0% | |
TAATTCGCACATTAAGACAA+CGG | + | chr6_3:79987598-79987617 | None:intergenic | 30.0% | |
AACAGATTCCATTATTTCCT+TGG | + | chr6_3:79987670-79987689 | None:intergenic | 30.0% | |
ATAGAACAACATTCATCTAC+TGG | + | chr6_3:79987825-79987844 | None:intergenic | 30.0% | |
TAGATGAATGTTGTTCTATG+AGG | - | chr6_3:79987826-79987845 | Msa0960550:intron | 30.0% | |
TATAAGTCCATGCTTCATAA+GGG | - | chr6_3:79987882-79987901 | Msa0960550:intron | 30.0% | |
! | AGTTTTCATGATTTGAGCTT+AGG | + | chr6_3:79987912-79987931 | None:intergenic | 30.0% |
AAACTATAAGGAAACCATAC+GGG | - | chr6_3:79987927-79987946 | Msa0960550:intron | 30.0% | |
! | GTAGAATGTCTTGTTAACTT+GGG | + | chr6_3:79988128-79988147 | None:intergenic | 30.0% |
! | AGTAGAATGTCTTGTTAACT+TGG | + | chr6_3:79988129-79988148 | None:intergenic | 30.0% |
!! | AAGACATTCTACTGACTTAT+TGG | - | chr6_3:79988136-79988155 | Msa0960550:CDS | 30.0% |
CAATATTAAGCATGTTCTCT+GGG | + | chr6_3:79988165-79988184 | None:intergenic | 30.0% | |
TCAATATTAAGCATGTTCTC+TGG | + | chr6_3:79988166-79988185 | None:intergenic | 30.0% | |
AAGGAATCTTACATAGGATT+GGG | + | chr6_3:79988191-79988210 | None:intergenic | 30.0% | |
TAAGGAATCTTACATAGGAT+TGG | + | chr6_3:79988192-79988211 | None:intergenic | 30.0% | |
ATCAACATTCTTAGGAGAAA+TGG | + | chr6_3:79988253-79988272 | None:intergenic | 30.0% | |
! | CCTAAGAATGTTGATTATGA+CGG | - | chr6_3:79988258-79988277 | Msa0960550:intron | 30.0% |
TGAAATAATTCCGAAATGCA+TGG | - | chr6_3:79988370-79988389 | Msa0960550:intron | 30.0% | |
ATTAAGAAACTTGGAAAGGA+AGG | - | chr6_3:79988452-79988471 | Msa0960550:intron | 30.0% | |
! | TGCTTTTCTAGATATACTGA+AGG | - | chr6_3:79988495-79988514 | Msa0960550:intron | 30.0% |
TGATATTACTTTCTGCGATT+TGG | - | chr6_3:79988522-79988541 | Msa0960550:intron | 30.0% | |
! | TTCTAAGGATTATATCTGCT+TGG | - | chr6_3:79988555-79988574 | Msa0960550:intron | 30.0% |
TTAACATCCAACTTATAGAG+TGG | + | chr6_3:79988621-79988640 | None:intergenic | 30.0% | |
TGAATATTTGGAAATCCATG+TGG | - | chr6_3:79988706-79988725 | Msa0960550:intron | 30.0% | |
! | GTTGAAGTTTTACAGTTCAT+TGG | - | chr6_3:79988735-79988754 | Msa0960550:intron | 30.0% |
AGTTCATTGGTAAGAAAGAA+GGG | - | chr6_3:79988748-79988767 | Msa0960550:intron | 30.0% | |
AATCAAATCGGAATTTAAGG+AGG | - | chr6_3:79988811-79988830 | Msa0960550:intron | 30.0% | |
ATCAAATCGGAATTTAAGGA+GGG | - | chr6_3:79988812-79988831 | Msa0960550:intron | 30.0% | |
ACATGCTTCCAATTTAATCT+GGG | - | chr6_3:79988878-79988897 | Msa0960550:intron | 30.0% | |
TTATGCATCCCAGATTAAAT+TGG | + | chr6_3:79988889-79988908 | None:intergenic | 30.0% | |
! | CTTCTCAAAGCTTTTCTTTA+AGG | - | chr6_3:79988925-79988944 | Msa0960550:intron | 30.0% |
!! | AAGCTTTTCTTTAAGGAAGA+AGG | - | chr6_3:79988932-79988951 | Msa0960550:intron | 30.0% |
AATTGCATCTGACATAATGA+AGG | - | chr6_3:79989043-79989062 | Msa0960550:CDS | 30.0% | |
! | GTATCAAAAGCAAACCTTTT+TGG | + | chr6_3:79989077-79989096 | None:intergenic | 30.0% |
AGTTGACAAAACAATCAAGT+AGG | + | chr6_3:79989169-79989188 | None:intergenic | 30.0% | |
TTTACCTTCAAAATGATCTC+CGG | + | chr6_3:79989310-79989329 | None:intergenic | 30.0% | |
TTGGGTAAAACATATACAGA+AGG | + | chr6_3:79989572-79989591 | None:intergenic | 30.0% | |
! | AAAGCAATTTTTCACATCGA+AGG | - | chr6_3:79989757-79989776 | Msa0960550:intron | 30.0% |
CAAATTAAGGATGCAATTGA+TGG | + | chr6_3:79989871-79989890 | None:intergenic | 30.0% | |
! | ATTTACTTTGGAGACAAACT+AGG | + | chr6_3:79989904-79989923 | None:intergenic | 30.0% |
AGCATAGAAAATGCAAATTC+AGG | - | chr6_3:79990091-79990110 | Msa0960550:intron | 30.0% | |
GCATAGAAAATGCAAATTCA+GGG | - | chr6_3:79990092-79990111 | Msa0960550:intron | 30.0% | |
ATCAGCAAGCAAATATTGTA+TGG | + | chr6_3:79990238-79990257 | None:intergenic | 30.0% | |
! | ATGGAAGATTTCTGATGTTT+TGG | - | chr6_3:79990476-79990495 | Msa0960550:five_prime_UTR | 30.0% |
! | GCGCAATAGTTTCTCAATTT+TGG | - | chr6_3:79984530-79984549 | Msa0960550:three_prime_UTR | 35.0% |
AAAGTTTGGGTATTTACCAG+CGG | + | chr6_3:79984751-79984770 | None:intergenic | 35.0% | |
! | GATTTTGTCTGATTTCATGG+GGG | - | chr6_3:79985131-79985150 | Msa0960550:intron | 35.0% |
!! | ATAGATAAAGGAGTGTCAAC+GGG | + | chr6_3:79985326-79985345 | None:intergenic | 35.0% |
!! | CATAGATAAAGGAGTGTCAA+CGG | + | chr6_3:79985327-79985346 | None:intergenic | 35.0% |
AGACTCACTATATCCAACAA+AGG | + | chr6_3:79985357-79985376 | None:intergenic | 35.0% | |
TTGAAGAAAGAAGCAGAAGA+AGG | - | chr6_3:79985394-79985413 | Msa0960550:intron | 35.0% | |
TAAAGAGAGCAAAGATGTTG+TGG | - | chr6_3:79985417-79985436 | Msa0960550:intron | 35.0% | |
AAAGAGAGCAAAGATGTTGT+GGG | - | chr6_3:79985418-79985437 | Msa0960550:intron | 35.0% | |
AGGCAAGAAAACACTAATCA+TGG | - | chr6_3:79985670-79985689 | Msa0960550:intron | 35.0% | |
CACACAAGGATTGTATTCTT+AGG | + | chr6_3:79985827-79985846 | None:intergenic | 35.0% | |
! | TTTGTTGATGTTTCAGGTGA+AGG | - | chr6_3:79986010-79986029 | Msa0960550:CDS | 35.0% |
AGACATTGCTCACTAACTAA+GGG | + | chr6_3:79986168-79986187 | None:intergenic | 35.0% | |
TGGAACTGTTTGACAATAAG+TGG | + | chr6_3:79986210-79986229 | None:intergenic | 35.0% | |
!! | GTGGTAAGTTGATATCGATA+AGG | + | chr6_3:79986269-79986288 | None:intergenic | 35.0% |
AAACATTGCTATAGGATGAG+AGG | - | chr6_3:79986329-79986348 | Msa0960550:CDS | 35.0% | |
GGAAAAAGGCAAGTCATAAT+TGG | - | chr6_3:79986457-79986476 | Msa0960550:intron | 35.0% | |
ACAACCACTCAATAACTTCT+AGG | + | chr6_3:79986486-79986505 | None:intergenic | 35.0% | |
AGAAGTTATTGAGTGGTTGT+TGG | - | chr6_3:79986486-79986505 | Msa0960550:intron | 35.0% | |
GAAGTTATTGAGTGGTTGTT+GGG | - | chr6_3:79986487-79986506 | Msa0960550:intron | 35.0% | |
AAGATGTAGAACAAAGACAC+AGG | + | chr6_3:79986562-79986581 | None:intergenic | 35.0% | |
TGCAAGAACACACAATACAA+TGG | + | chr6_3:79986609-79986628 | None:intergenic | 35.0% | |
TGTGTGTTCTTGCAATATTC+TGG | - | chr6_3:79986615-79986634 | Msa0960550:intron | 35.0% | |
GAACTATTTCCAGAACTGTT+TGG | - | chr6_3:79986642-79986661 | Msa0960550:intron | 35.0% | |
AAACTGATACCAAACAGTTC+TGG | + | chr6_3:79986654-79986673 | None:intergenic | 35.0% | |
TTTGCAACTGTTCTGACTAT+AGG | - | chr6_3:79986710-79986729 | Msa0960550:intron | 35.0% | |
!!! | AGTAGAAGGCATTCATTTTG+AGG | + | chr6_3:79986741-79986760 | None:intergenic | 35.0% |
TTCTCTGTGAACTGAATCAT+TGG | - | chr6_3:79986850-79986869 | Msa0960550:intron | 35.0% | |
GTGTATAATGATGTTTGGTC+TGG | - | chr6_3:79987248-79987267 | Msa0960550:intron | 35.0% | |
TGTATTTCTCCATTGTTCTG+CGG | + | chr6_3:79987511-79987530 | None:intergenic | 35.0% | |
AATTCGCACATTAAGACAAC+GGG | + | chr6_3:79987597-79987616 | None:intergenic | 35.0% | |
CTATTTACCTGTTCTTCACT+TGG | + | chr6_3:79987626-79987645 | None:intergenic | 35.0% | |
TGTAGTGTCCAAGGAAATAA+TGG | - | chr6_3:79987659-79987678 | Msa0960550:intron | 35.0% | |
! | GGAATCTGTTTCCTATGTTT+TGG | - | chr6_3:79987680-79987699 | Msa0960550:intron | 35.0% |
CCTCAATGCTAAAAAACAAG+GGG | + | chr6_3:79987715-79987734 | None:intergenic | 35.0% | |
GCCTCAATGCTAAAAAACAA+GGG | + | chr6_3:79987716-79987735 | None:intergenic | 35.0% | |
TGCCTCAATGCTAAAAAACA+AGG | + | chr6_3:79987717-79987736 | None:intergenic | 35.0% | |
! | ATTGAGGCAATTGTTTTCTC+TGG | - | chr6_3:79987728-79987747 | Msa0960550:intron | 35.0% |
ATGAATGTTGTTCTATGAGG+TGG | - | chr6_3:79987829-79987848 | Msa0960550:intron | 35.0% | |
GTATAAGTCCATGCTTCATA+AGG | - | chr6_3:79987881-79987900 | Msa0960550:intron | 35.0% | |
AGGAATCTTACATAGGATTG+GGG | + | chr6_3:79988190-79988209 | None:intergenic | 35.0% | |
GCACATAAGGAATCTTACAT+AGG | + | chr6_3:79988197-79988216 | None:intergenic | 35.0% | |
ATTCTTAGGAGAAATGGTCT+TGG | + | chr6_3:79988247-79988266 | None:intergenic | 35.0% | |
CCGTCATAATCAACATTCTT+AGG | + | chr6_3:79988261-79988280 | None:intergenic | 35.0% | |
! | AATAATGCCCAACATTGACT+TGG | + | chr6_3:79988404-79988423 | None:intergenic | 35.0% |
!!! | CTGCATTTTTTAGTATGTCC+TGG | + | chr6_3:79988432-79988451 | None:intergenic | 35.0% |
GCAGATTAAGAAACTTGGAA+AGG | - | chr6_3:79988448-79988467 | Msa0960550:intron | 35.0% | |
TTTGGTCAAGTTCTCTTCTA+AGG | - | chr6_3:79988540-79988559 | Msa0960550:intron | 35.0% | |
AGCATTTCCACTCTATAAGT+TGG | - | chr6_3:79988611-79988630 | Msa0960550:intron | 35.0% | |
CAGTTCATTGGTAAGAAAGA+AGG | - | chr6_3:79988747-79988766 | Msa0960550:intron | 35.0% | |
GCATAGCAGAGAAATCAAAT+CGG | - | chr6_3:79988799-79988818 | Msa0960550:intron | 35.0% | |
GCAAGTCTCAAATGACAATA+TGG | + | chr6_3:79988838-79988857 | None:intergenic | 35.0% | |
! | CAGATTAAATTGGAAGCATG+TGG | + | chr6_3:79988879-79988898 | None:intergenic | 35.0% |
CACATGCTTCCAATTTAATC+TGG | - | chr6_3:79988877-79988896 | Msa0960550:intron | 35.0% | |
TGACAAAACAATCAAGTAGG+CGG | + | chr6_3:79989166-79989185 | None:intergenic | 35.0% | |
!! | TTTAGGTTGTTTCAAGTTCG+AGG | - | chr6_3:79989250-79989269 | Msa0960550:intron | 35.0% |
GACTTCTTTATGAGCTATTG+AGG | - | chr6_3:79989417-79989436 | Msa0960550:CDS | 35.0% | |
TTATGAGCTATTGAGGAAAC+TGG | - | chr6_3:79989424-79989443 | Msa0960550:CDS | 35.0% | |
TTACATAATATGCTGCCCAA+TGG | + | chr6_3:79989475-79989494 | None:intergenic | 35.0% | |
AGTCTAATATCAAGGCAATG+AGG | + | chr6_3:79989622-79989641 | None:intergenic | 35.0% | |
GAAAAATTGCTTTCTGTCCA+AGG | + | chr6_3:79989750-79989769 | None:intergenic | 35.0% | |
AGGAGAGAATGTGCAAATTA+AGG | + | chr6_3:79989884-79989903 | None:intergenic | 35.0% | |
TAAACATGTTAGGGACTAAC+TGG | - | chr6_3:79990016-79990035 | Msa0960550:intron | 35.0% | |
TGCAAATTCAGGGACAAAAA+TGG | - | chr6_3:79990102-79990121 | Msa0960550:intron | 35.0% | |
AAATTCAGGGACAAAAATGG+TGG | - | chr6_3:79990105-79990124 | Msa0960550:intron | 35.0% | |
TCTCTCATCTTCTCAACTTA+AGG | - | chr6_3:79990421-79990440 | Msa0960550:five_prime_UTR | 35.0% | |
TATGCAGACTACAATCATCA+TGG | - | chr6_3:79990457-79990476 | Msa0960550:five_prime_UTR | 35.0% | |
ATTTCATGGGGGATAAGGAA+TGG | - | chr6_3:79985142-79985161 | Msa0960550:intron | 40.0% | |
!! | TTCGGTGCTATATTAGGCTT+AGG | + | chr6_3:79985182-79985201 | None:intergenic | 40.0% |
! | CCTAATATAGCACCGAAACA+CGG | - | chr6_3:79985185-79985204 | Msa0960550:intron | 40.0% |
TAACAAGATTCGCCGTGTTT+CGG | + | chr6_3:79985200-79985219 | None:intergenic | 40.0% | |
!! | TAGATAAAGGAGTGTCAACG+GGG | + | chr6_3:79985325-79985344 | None:intergenic | 40.0% |
CGTTGACACTCCTTTATCTA+TGG | - | chr6_3:79985325-79985344 | Msa0960550:CDS | 40.0% | |
CACTCCTTTATCTATGGTTG+TGG | - | chr6_3:79985331-79985350 | Msa0960550:CDS | 40.0% | |
AAGGCCACAACCATAGATAA+AGG | + | chr6_3:79985338-79985357 | None:intergenic | 40.0% | |
! | ATAACACTGTCGAGGGTTTT+GGG | + | chr6_3:79985458-79985477 | None:intergenic | 40.0% |
!! | TGTCCTCATTTGCTGTTCTA+TGG | - | chr6_3:79985635-79985654 | Msa0960550:CDS | 40.0% |
! | AAAAAAGACCTTTTCGGCAC+CGG | + | chr6_3:79985720-79985739 | None:intergenic | 40.0% |
!!! | TTACTTTTGGTGCTCACACA+AGG | + | chr6_3:79985841-79985860 | None:intergenic | 40.0% |
GCAAGAAGTAACAGTAGTTC+TGG | + | chr6_3:79985960-79985979 | None:intergenic | 40.0% | |
TTCAGGTGAAGGTGGAAAAT+AGG | - | chr6_3:79986021-79986040 | Msa0960550:CDS | 40.0% | |
TCAGGTGAAGGTGGAAAATA+GGG | - | chr6_3:79986022-79986041 | Msa0960550:CDS | 40.0% | |
CAGACATTGCTCACTAACTA+AGG | + | chr6_3:79986169-79986188 | None:intergenic | 40.0% | |
ATTGCTATAGGATGAGAGGT+AGG | - | chr6_3:79986333-79986352 | Msa0960550:CDS | 40.0% | |
!! | AAACTGACTCTGGTCAGTTT+TGG | + | chr6_3:79986368-79986387 | None:intergenic | 40.0% |
GTTGCCTAGAAGTTATTGAG+TGG | - | chr6_3:79986479-79986498 | Msa0960550:intron | 40.0% | |
TTATTGAGTGGTTGTTGGGT+GGG | - | chr6_3:79986491-79986510 | Msa0960550:intron | 40.0% | |
AGAACCAAGCTCTCAAATCT+TGG | - | chr6_3:79986524-79986543 | Msa0960550:intron | 40.0% | |
TAGAACAAAGACACAGGACA+TGG | + | chr6_3:79986556-79986575 | None:intergenic | 40.0% | |
GTGTTCTTGCAATATTCTGG+CGG | - | chr6_3:79986618-79986637 | Msa0960550:intron | 40.0% | |
!! | AGTACTTGAGCACTGTTTTC+AGG | - | chr6_3:79986904-79986923 | Msa0960550:intron | 40.0% |
TCTTCATGGTCAACAAACAG+TGG | - | chr6_3:79987159-79987178 | Msa0960550:intron | 40.0% | |
! | AGAGCCTTAAAGCATTACAC+AGG | + | chr6_3:79987288-79987307 | None:intergenic | 40.0% |
AATAAGAAACCTCTCCACCT+TGG | - | chr6_3:79987328-79987347 | Msa0960550:intron | 40.0% | |
TAATGCACCAAGTGAAGAAC+AGG | - | chr6_3:79987616-79987635 | Msa0960550:intron | 40.0% | |
! | GAAGTTTTCTGTAGTGTCCA+AGG | - | chr6_3:79987650-79987669 | Msa0960550:intron | 40.0% |
!!! | CCCCTTGTTTTTTAGCATTG+AGG | - | chr6_3:79987712-79987731 | Msa0960550:intron | 40.0% |
! | AGGCAATTGTTTTCTCTGGT+AGG | - | chr6_3:79987732-79987751 | Msa0960550:intron | 40.0% |
! | GGCAATTGTTTTCTCTGGTA+GGG | - | chr6_3:79987733-79987752 | Msa0960550:intron | 40.0% |
GGAATCTTACATAGGATTGG+GGG | + | chr6_3:79988189-79988208 | None:intergenic | 40.0% | |
!! | ATGGTCTTGGAAGTGCTAAA+AGG | + | chr6_3:79988234-79988253 | None:intergenic | 40.0% |
CGGAATTATTTCAGCCTATG+AGG | + | chr6_3:79988363-79988382 | None:intergenic | 40.0% | |
AGAATCCACCAAGTCAATGT+TGG | - | chr6_3:79988393-79988412 | Msa0960550:intron | 40.0% | |
GAATCCACCAAGTCAATGTT+GGG | - | chr6_3:79988394-79988413 | Msa0960550:intron | 40.0% | |
AGAAACTTGGAAAGGAAGGT+TGG | - | chr6_3:79988456-79988475 | Msa0960550:intron | 40.0% | |
GAAACTTGGAAAGGAAGGTT+GGG | - | chr6_3:79988457-79988476 | Msa0960550:intron | 40.0% | |
AACTTCAACAATCTGCCACA+TGG | + | chr6_3:79988724-79988743 | None:intergenic | 40.0% | |
AAGCATGTGGAGATTACTGT+TGG | + | chr6_3:79988866-79988885 | None:intergenic | 40.0% | |
!! | ACAGCTCATGTGTTACTTGT+AGG | - | chr6_3:79988961-79988980 | Msa0960550:intron | 40.0% |
ATTGTTTGCTTGTCGGTGAA+AGG | + | chr6_3:79988990-79989009 | None:intergenic | 40.0% | |
GGCGGTTATAAAAACTGACA+AGG | + | chr6_3:79989148-79989167 | None:intergenic | 40.0% | |
TGAAGCATGAAATCTGCCAT+TGG | - | chr6_3:79989456-79989475 | Msa0960550:intron | 40.0% | |
GAAGCATGAAATCTGCCATT+GGG | - | chr6_3:79989457-79989476 | Msa0960550:intron | 40.0% | |
AGTATCTTCTGCATGAACTC+AGG | - | chr6_3:79989546-79989565 | Msa0960550:intron | 40.0% | |
! | TTACCCAATTTGATAGCTCG+CGG | - | chr6_3:79989584-79989603 | Msa0960550:CDS | 40.0% |
TTCTTTCCCCTCATTTAACC+AGG | - | chr6_3:79989711-79989730 | Msa0960550:intron | 40.0% | |
TATGCTCCTGGTTAAATGAG+GGG | + | chr6_3:79989720-79989739 | None:intergenic | 40.0% | |
CTATGCTCCTGGTTAAATGA+GGG | + | chr6_3:79989721-79989740 | None:intergenic | 40.0% | |
CTATACATTGGCAGCATTTG+TGG | - | chr6_3:79990271-79990290 | Msa0960550:intron | 40.0% | |
ACATTCGGCTGAAGAAACAA+TGG | - | chr6_3:79990332-79990351 | Msa0960550:intron | 40.0% | |
GTCTGATTTCATGGGGGATA+AGG | - | chr6_3:79985137-79985156 | Msa0960550:intron | 45.0% | |
!! | CCGTGTTTCGGTGCTATATT+AGG | + | chr6_3:79985188-79985207 | None:intergenic | 45.0% |
ACAAAACACTGGCACAGACA+CGG | + | chr6_3:79985287-79985306 | None:intergenic | 45.0% | |
TCTATGGTTGTGGCCTTTGT+TGG | - | chr6_3:79985341-79985360 | Msa0960550:intron | 45.0% | |
! | CATAACACTGTCGAGGGTTT+TGG | + | chr6_3:79985459-79985478 | None:intergenic | 45.0% |
CAAAACCCTCGACAGTGTTA+TGG | - | chr6_3:79985457-79985476 | Msa0960550:intron | 45.0% | |
GTGAACCATAACACTGTCGA+GGG | + | chr6_3:79985465-79985484 | None:intergenic | 45.0% | |
TGTGAACCATAACACTGTCG+AGG | + | chr6_3:79985466-79985485 | None:intergenic | 45.0% | |
AGTGACCTGCAACAACACAT+CGG | + | chr6_3:79985606-79985625 | None:intergenic | 45.0% | |
GGACCATAGAACAGCAAATG+AGG | + | chr6_3:79985641-79985660 | None:intergenic | 45.0% | |
! | TTGCTGTTCTATGGTCCATC+AGG | - | chr6_3:79985644-79985663 | Msa0960550:CDS | 45.0% |
! | AAAAAGACCTTTTCGGCACC+GGG | + | chr6_3:79985719-79985738 | None:intergenic | 45.0% |
! | GTTGATGTTTCAGGTGAAGG+TGG | - | chr6_3:79986013-79986032 | Msa0960550:CDS | 45.0% |
TGAAGGTGGAAAATAGGGCT+TGG | - | chr6_3:79986027-79986046 | Msa0960550:CDS | 45.0% | |
GGAAAATAGGGCTTGGAAAG+TGG | - | chr6_3:79986034-79986053 | Msa0960550:CDS | 45.0% | |
CGATAAGGTTGCTCATTCTC+TGG | + | chr6_3:79986254-79986273 | None:intergenic | 45.0% | |
! | CTGACCAGAGTCAGTTTTTG+TGG | - | chr6_3:79986371-79986390 | Msa0960550:intron | 45.0% |
! | ACTGCCACAAAAACTGACTC+TGG | + | chr6_3:79986378-79986397 | None:intergenic | 45.0% |
GTTATTGAGTGGTTGTTGGG+TGG | - | chr6_3:79986490-79986509 | Msa0960550:intron | 45.0% | |
CCTACCAAGATTTGAGAGCT+TGG | + | chr6_3:79986531-79986550 | None:intergenic | 45.0% | |
CCAAGCTCTCAAATCTTGGT+AGG | - | chr6_3:79986528-79986547 | Msa0960550:intron | 45.0% | |
AGTAATACTGCAAGCCAAGG+TGG | + | chr6_3:79987345-79987364 | None:intergenic | 45.0% | |
TGCAGTAATACTGCAAGCCA+AGG | + | chr6_3:79987348-79987367 | None:intergenic | 45.0% | |
AAGTCCATGCTTCATAAGGG+AGG | - | chr6_3:79987885-79987904 | Msa0960550:intron | 45.0% | |
AGTCCATGCTTCATAAGGGA+GGG | - | chr6_3:79987886-79987905 | Msa0960550:intron | 45.0% | |
GGTAGCGAAACAAACTACTC+TGG | + | chr6_3:79988107-79988126 | None:intergenic | 45.0% | |
!! | TTGGAAGTGCTAAAAGGTGC+CGG | + | chr6_3:79988228-79988247 | None:intergenic | 45.0% |
ATATCCTCTCTCCCTAACCA+AGG | - | chr6_3:79988308-79988327 | Msa0960550:intron | 45.0% | |
TATCCTCTCTCCCTAACCAA+GGG | - | chr6_3:79988309-79988328 | Msa0960550:intron | 45.0% | |
AGAAGGTCTACCCTTGGTTA+GGG | + | chr6_3:79988322-79988341 | None:intergenic | 45.0% | |
TAGAAGGTCTACCCTTGGTT+AGG | + | chr6_3:79988323-79988342 | None:intergenic | 45.0% | |
!! | AGCCTATGAGGCTGATTTGT+GGG | + | chr6_3:79988351-79988370 | None:intergenic | 45.0% |
! | GGTGGATTCTCCATGCATTT+CGG | + | chr6_3:79988383-79988402 | None:intergenic | 45.0% |
!! | AATGCCCAACATTGACTTGG+TGG | + | chr6_3:79988401-79988420 | None:intergenic | 45.0% |
GTTGGGCATTATTGTTTGCC+AGG | - | chr6_3:79988411-79988430 | Msa0960550:intron | 45.0% | |
! | GCTGCAACTTCCTTCTAGTT+TGG | - | chr6_3:79988770-79988789 | Msa0960550:intron | 45.0% |
GTGGAGATTACTGTTGGACA+CGG | + | chr6_3:79988860-79988879 | None:intergenic | 45.0% | |
TGGGGGAATTGTTTGCTTGT+CGG | + | chr6_3:79988997-79989016 | None:intergenic | 45.0% | |
CAAGCAAACAATTCCCCCAA+TGG | - | chr6_3:79988998-79989017 | Msa0960550:intron | 45.0% | |
AAACAATTCCCCCAATGGAC+TGG | - | chr6_3:79989003-79989022 | Msa0960550:intron | 45.0% | |
! | AACAATTCCCCCAATGGACT+GGG | - | chr6_3:79989004-79989023 | Msa0960550:intron | 45.0% |
TATACTCCTCCCAGTCCATT+GGG | + | chr6_3:79989016-79989035 | None:intergenic | 45.0% | |
ATATACTCCTCCCAGTCCAT+TGG | + | chr6_3:79989017-79989036 | None:intergenic | 45.0% | |
TGAAGGAACAGAGCCCAAAA+AGG | - | chr6_3:79989060-79989079 | Msa0960550:intron | 45.0% | |
! | TCCTCCGGAGATCATTTTGA+AGG | - | chr6_3:79989303-79989322 | Msa0960550:intron | 45.0% |
ACCTTCAAAATGATCTCCGG+AGG | + | chr6_3:79989307-79989326 | None:intergenic | 45.0% | |
GTTCCGCGAGCTATCAAATT+GGG | + | chr6_3:79989590-79989609 | None:intergenic | 45.0% | |
TGTTCCGCGAGCTATCAAAT+TGG | + | chr6_3:79989591-79989610 | None:intergenic | 45.0% | |
CCTATGCTCCTGGTTAAATG+AGG | + | chr6_3:79989722-79989741 | None:intergenic | 45.0% | |
! | CCTCATTTAACCAGGAGCAT+AGG | - | chr6_3:79989719-79989738 | Msa0960550:intron | 45.0% |
TCCTTCCTCATCGCAACATT+CGG | - | chr6_3:79990317-79990336 | Msa0960550:intron | 45.0% | |
GTTTGGGTATTTACCAGCGG+CGG | + | chr6_3:79984748-79984767 | None:intergenic | 50.0% | |
!! | TAAAGGAGTGTCAACGGGGA+GGG | + | chr6_3:79985321-79985340 | None:intergenic | 50.0% |
!! | ATAAAGGAGTGTCAACGGGG+AGG | + | chr6_3:79985322-79985341 | None:intergenic | 50.0% |
! | TGGATCCGATGTGTTGTTGC+AGG | - | chr6_3:79985598-79985617 | Msa0960550:intron | 50.0% |
GCTCTTCTCCGCCAAATGTT+TGG | - | chr6_3:79985692-79985711 | Msa0960550:intron | 50.0% | |
!! | CTGGTCAGTTTTGGCCTTCT+AGG | + | chr6_3:79986359-79986378 | None:intergenic | 50.0% |
!! | CTTGAGCACTGTTTTCAGGC+TGG | - | chr6_3:79986908-79986927 | Msa0960550:intron | 50.0% |
CGCTTGGAGTCATTTCGATG+TGG | + | chr6_3:79986979-79986998 | None:intergenic | 50.0% | |
GAAATGACTCCAAGCGATGC+AGG | - | chr6_3:79986983-79987002 | Msa0960550:intron | 50.0% | |
TGTTCTGCGGAGAGAATGCT+GGG | + | chr6_3:79987498-79987517 | None:intergenic | 50.0% | |
TTGTTCTGCGGAGAGAATGC+TGG | + | chr6_3:79987499-79987518 | None:intergenic | 50.0% | |
GCATTCTCTCCGCAGAACAA+TGG | - | chr6_3:79987499-79987518 | Msa0960550:CDS | 50.0% | |
GCACATTAAGACAACGGGAG+CGG | + | chr6_3:79987592-79987611 | None:intergenic | 50.0% | |
GGCAATAGCTGCTAACCGTA+TGG | + | chr6_3:79987944-79987963 | None:intergenic | 50.0% | |
GGCAATAGCTACTACCCGTA+TGG | + | chr6_3:79988029-79988048 | None:intergenic | 50.0% | |
TCCTTATGTGCTTCACCGAC+CGG | - | chr6_3:79988206-79988225 | Msa0960550:intron | 50.0% | |
!! | AAGTGCTAAAAGGTGCCGGT+CGG | + | chr6_3:79988224-79988243 | None:intergenic | 50.0% |
GGTTAGGGAGAGAGGATATC+AGG | + | chr6_3:79988307-79988326 | None:intergenic | 50.0% | |
!! | TGATTTGTGGGGGCACTAGA+AGG | + | chr6_3:79988339-79988358 | None:intergenic | 50.0% |
!! | CCTATGAGGCTGATTTGTGG+GGG | + | chr6_3:79988349-79988368 | None:intergenic | 50.0% |
!! | GCCTATGAGGCTGATTTGTG+GGG | + | chr6_3:79988350-79988369 | None:intergenic | 50.0% |
!! | CAGCCTATGAGGCTGATTTG+TGG | + | chr6_3:79988352-79988371 | None:intergenic | 50.0% |
ATGCGAGCAGCCAAACTAGA+AGG | + | chr6_3:79988783-79988802 | None:intergenic | 50.0% | |
ATACTCCTCCCAGTCCATTG+GGG | + | chr6_3:79989015-79989034 | None:intergenic | 50.0% | |
GCTGACCAATTGCATTCCTC+CGG | - | chr6_3:79989288-79989307 | Msa0960550:intron | 50.0% | |
GATCTCCGGAGGAATGCAAT+TGG | + | chr6_3:79989296-79989315 | None:intergenic | 50.0% | |
TTCAGCCGAATGTTGCGATG+AGG | + | chr6_3:79990325-79990344 | None:intergenic | 50.0% | |
CAATGGTGCTTTGCTTTCCC+AGG | - | chr6_3:79990349-79990368 | Msa0960550:five_prime_UTR | 50.0% | |
TGCGATTCTGCGACGGTCTA+GGG | + | chr6_3:79984644-79984663 | None:intergenic | 55.0% | |
CTGTGACTGCGATTCTGCGA+CGG | + | chr6_3:79984651-79984670 | None:intergenic | 55.0% | |
GAGAGTGAGCAGTCGAGCTT+CGG | + | chr6_3:79984702-79984721 | None:intergenic | 55.0% | |
TTCTATGGTCCATCAGGCGC+AGG | - | chr6_3:79985650-79985669 | Msa0960550:CDS | 55.0% | |
! | GTTTTCTTGCCTGCGCCTGA+TGG | + | chr6_3:79985662-79985681 | None:intergenic | 55.0% |
CTCCGCCAAATGTTTGGACC+CGG | - | chr6_3:79985698-79985717 | Msa0960550:intron | 55.0% | |
CACCGGGTCCAAACATTTGG+CGG | + | chr6_3:79985703-79985722 | None:intergenic | 55.0% | |
GGATGAGAGGTAGGCCTAGA+AGG | - | chr6_3:79986342-79986361 | Msa0960550:intron | 55.0% | |
TGGTTGTTGGGTGGGACTGT+GGG | - | chr6_3:79986499-79986518 | Msa0960550:intron | 55.0% | |
TCCAAGCGATGCAGGCTTTC+AGG | - | chr6_3:79986991-79987010 | Msa0960550:intron | 55.0% | |
TCCTGAAAGCCTGCATCGCT+TGG | + | chr6_3:79986995-79987014 | None:intergenic | 55.0% | |
TACTGCAAGCCAAGGTGGAG+AGG | + | chr6_3:79987340-79987359 | None:intergenic | 55.0% | |
AGGCCCTCCCTTATGAAGCA+TGG | + | chr6_3:79987892-79987911 | None:intergenic | 55.0% | |
CTACCCTTGGTTAGGGAGAG+AGG | + | chr6_3:79988315-79988334 | None:intergenic | 55.0% | |
GGCACTAGAAGGTCTACCCT+TGG | + | chr6_3:79988328-79988347 | None:intergenic | 55.0% | |
CCCCCACAAATCAGCCTCAT+AGG | - | chr6_3:79988346-79988365 | Msa0960550:intron | 55.0% | |
!! | AATTCCCCCAATGGACTGGG+AGG | - | chr6_3:79989007-79989026 | Msa0960550:intron | 55.0% |
TACTCCTCCCAGTCCATTGG+GGG | + | chr6_3:79989014-79989033 | None:intergenic | 55.0% | |
GCCGAATGTTGCGATGAGGA+AGG | + | chr6_3:79990321-79990340 | None:intergenic | 55.0% | |
CTGCGATTCTGCGACGGTCT+AGG | + | chr6_3:79984645-79984664 | None:intergenic | 60.0% | |
GCAGTCACAGCCATCCACCT+CGG | - | chr6_3:79984661-79984680 | Msa0960550:three_prime_UTR | 60.0% | |
GCAGTCGAGCTTCGGTGGAA+CGG | + | chr6_3:79984694-79984713 | None:intergenic | 60.0% | |
AGTGAGCAGTCGAGCTTCGG+TGG | + | chr6_3:79984699-79984718 | None:intergenic | 60.0% | |
CGGATGGAGTGGAGCAGAGA+TGG | + | chr6_3:79984728-79984747 | None:intergenic | 60.0% | |
TTTACCAGCGGCGGATGGAG+TGG | + | chr6_3:79984739-79984758 | None:intergenic | 60.0% | |
GGGTATTTACCAGCGGCGGA+TGG | + | chr6_3:79984744-79984763 | None:intergenic | 60.0% | |
! | CGGCACCGGGTCCAAACATT+TGG | + | chr6_3:79985706-79985725 | None:intergenic | 60.0% |
! | GTTTGGACCCGGTGCCGAAA+AGG | - | chr6_3:79985709-79985728 | Msa0960550:intron | 60.0% |
GTGGTTGTTGGGTGGGACTG+TGG | - | chr6_3:79986498-79986517 | Msa0960550:intron | 60.0% | |
GCCGGTCGGTGAAGCACATA+AGG | + | chr6_3:79988210-79988229 | None:intergenic | 60.0% | |
CAAGGCGCATCCTATGCTCC+TGG | + | chr6_3:79989732-79989751 | None:intergenic | 60.0% | |
! | CAGGAGCATAGGATGCGCCT+TGG | - | chr6_3:79989730-79989749 | Msa0960550:intron | 60.0% |
GTCGAGCTTCGGTGGAACGG+AGG | + | chr6_3:79984691-79984710 | None:intergenic | 65.0% | |
CGGAGGAGCTCCGAGGTGGA+TGG | + | chr6_3:79984674-79984693 | None:intergenic | 70.0% | |
GGAACGGAGGAGCTCCGAGG+TGG | + | chr6_3:79984678-79984697 | None:intergenic | 70.0% | |
GGTGGAACGGAGGAGCTCCG+AGG | + | chr6_3:79984681-79984700 | None:intergenic | 70.0% | |
TGCTCCACTCCATCCGCCGC+TGG | - | chr6_3:79984732-79984751 | Msa0960550:exon | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 79984508 | 79990581 | 79984508 | ID=Msa0960550;Name=Msa0960550 |
chr6_3 | mRNA | 79984508 | 79990581 | 79984508 | ID=Msa0960550-mRNA-1;Parent=Msa0960550;Name=Msa0960550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=307|1|1|1|0.90|0.83|12|238|354 |
chr6_3 | exon | 79984508 | 79984804 | 79984508 | ID=Msa0960550-mRNA-1:exon:14417;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79985311 | 79985356 | 79985311 | ID=Msa0960550-mRNA-1:exon:14416;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79985599 | 79985673 | 79985599 | ID=Msa0960550-mRNA-1:exon:14415;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79985765 | 79985834 | 79985765 | ID=Msa0960550-mRNA-1:exon:14414;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79986008 | 79986106 | 79986008 | ID=Msa0960550-mRNA-1:exon:14413;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79986221 | 79986357 | 79986221 | ID=Msa0960550-mRNA-1:exon:14412;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79987452 | 79987633 | 79987452 | ID=Msa0960550-mRNA-1:exon:14411;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79987995 | 79988163 | 79987995 | ID=Msa0960550-mRNA-1:exon:14410;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79989031 | 79989063 | 79989031 | ID=Msa0960550-mRNA-1:exon:14409;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79989359 | 79989469 | 79989359 | ID=Msa0960550-mRNA-1:exon:14408;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79989575 | 79989719 | 79989575 | ID=Msa0960550-mRNA-1:exon:14407;Parent=Msa0960550-mRNA-1 |
chr6_3 | exon | 79990336 | 79990581 | 79990336 | ID=Msa0960550-mRNA-1:exon:14406;Parent=Msa0960550-mRNA-1 |
chr6_3 | five_prime_UTR | 79990336 | 79990581 | 79990336 | ID=Msa0960550-mRNA-1:five_prime_utr;Parent=Msa0960550-mRNA-1 |
chr6_3 | five_prime_UTR | 79989659 | 79989719 | 79989659 | ID=Msa0960550-mRNA-1:five_prime_utr;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79989575 | 79989658 | 79989575 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79989359 | 79989469 | 79989359 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79989031 | 79989063 | 79989031 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79987995 | 79988163 | 79987995 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79987452 | 79987633 | 79987452 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79986221 | 79986357 | 79986221 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79986008 | 79986106 | 79986008 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79985765 | 79985834 | 79985765 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79985599 | 79985673 | 79985599 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79985311 | 79985356 | 79985311 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | CDS | 79984746 | 79984804 | 79984746 | ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1 |
chr6_3 | three_prime_UTR | 79984508 | 79984745 | 79984508 | ID=Msa0960550-mRNA-1:three_prime_utr;Parent=Msa0960550-mRNA-1 |
Gene Sequence |
Protein sequence |