AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960550 MtrunA17_Chr6g0478631 98.870 354 4 0 1 354 1 354 0.0 732
Msa0960550 MtrunA17_Chr6g0460841 96.610 354 12 0 1 354 1 354 0.0 721
Msa0960550 MtrunA17_Chr5g0404521 34.066 273 161 4 2 269 413 671 7.58e-50 177
Msa0960550 MtrunA17_Chr3g0145801 30.319 376 228 8 2 347 421 792 4.80e-46 167
Msa0960550 MtrunA17_Chr3g0124791 25.072 347 217 6 2 341 33 343 1.54e-33 127
Msa0960550 MtrunA17_Chr3g0125031 32.218 239 125 4 3 234 11 219 3.46e-33 125
Msa0960550 MtrunA17_Chr4g0057341 30.556 216 118 4 3 217 17 201 1.14e-24 102
Msa0960550 MtrunA17_Chr5g0404541 43.750 64 36 0 283 346 2 65 9.20e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960550 AT5G27740.1 83.898 354 57 0 1 354 1 354 0.0 646
Msa0960550 AT1G21690.1 33.333 234 119 4 3 229 11 214 8.77e-33 125
Msa0960550 AT1G21690.3 32.636 239 124 4 3 234 11 219 1.09e-32 125
Msa0960550 AT1G21690.4 32.051 234 115 4 3 229 11 207 4.20e-30 117
Msa0960550 AT1G77470.1 27.347 245 148 3 3 247 41 255 2.28e-29 116
Msa0960550 AT1G21690.2 32.636 239 112 6 3 234 11 207 2.69e-29 115
Msa0960550 AT1G63160.1 27.126 247 146 6 3 248 17 230 7.10e-23 98.2

Find 103 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCAATAGTTTCTCAATTT+TGG 0.120613 6_3:-79990537 Msa0960550:five_prime_UTR
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6_3:-79988076 Msa0960550:CDS
CATAACACTGTCGAGGGTTT+TGG 0.212335 6_3:+79989611 None:intergenic
AGAAATCAAATCGGAATTTA+AGG 0.217343 6_3:-79986259 Msa0960550:CDS
TGTCCTCATTTGCTGTTCTA+TGG 0.252413 6_3:-79989432 Msa0960550:CDS
TGCTCAAAATCTCAAGAAAT+TGG 0.257130 6_3:-79989574 Msa0960550:intron
ATGGAAGATTTCTGATGTTT+TGG 0.259387 6_3:-79984591 Msa0960550:three_prime_UTR
TTCAGGTGAAGGTGGAAAAT+AGG 0.275227 6_3:-79989046 Msa0960550:intron
CGGCACCGGGTCCAAACATT+TGG 0.299333 6_3:+79989364 None:intergenic
TCTCTCATCTTCTCAACTTA+AGG 0.307732 6_3:-79984646 Msa0960550:three_prime_UTR
TTTCTTCCCTTTAGTATCAA+TGG 0.323241 6_3:+79988005 None:intergenic
AAAGGGAAGAAAGGATTTAA+AGG 0.324156 6_3:-79987994 Msa0960550:intron
GCTCTTCTCCGCCAAATGTT+TGG 0.325475 6_3:-79989375 Msa0960550:CDS
GCTGCAACTTCCTTCTAGTT+TGG 0.326964 6_3:-79986297 Msa0960550:CDS
CTGCGATTCTGCGACGGTCT+AGG 0.328997 6_3:+79990425 None:intergenic
TTCTTCCCTTTAGTATCAAT+GGG 0.348124 6_3:+79988006 None:intergenic
TCAGGTGAAGGTGGAAAATA+GGG 0.353576 6_3:-79989045 Msa0960550:intron
TTATGAGCTATTGAGGAAAC+TGG 0.357086 6_3:-79985643 Msa0960550:CDS
CTATACATTGGCAGCATTTG+TGG 0.358356 6_3:-79984796 Msa0960550:intron
GCAAGTCTCAAATGACAATA+TGG 0.375769 6_3:+79986232 None:intergenic
TTGTTCTGCGGAGAGAATGC+TGG 0.394620 6_3:+79987571 None:intergenic
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6_3:+79988075 None:intergenic
CTATTTACCTGTTCTTCACT+TGG 0.411342 6_3:+79987444 None:intergenic
TATACTCCTCCCAGTCCATT+GGG 0.413295 6_3:+79986054 None:intergenic
TGAAGGAACAGAGCCCAAAA+AGG 0.416911 6_3:-79986007 Msa0960550:intron
GACTTCTTTATGAGCTATTG+AGG 0.419698 6_3:-79985650 Msa0960550:CDS
AATACAATAAAATTGTATCC+TGG 0.422379 6_3:+79984700 None:intergenic
GAGAGTGAGCAGTCGAGCTT+CGG 0.427198 6_3:+79990368 None:intergenic
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6_3:-79988040 Msa0960550:CDS
TCCTTCCTCATCGCAACATT+CGG 0.436381 6_3:-79984750 Msa0960550:CDS
CAAAACCCTCGACAGTGTTA+TGG 0.439317 6_3:-79989610 Msa0960550:CDS
TGCGATTCTGCGACGGTCTA+GGG 0.439561 6_3:+79990426 None:intergenic
TAATGCACCAAGTGAAGAAC+AGG 0.440498 6_3:-79987451 Msa0960550:intron
GTTTGGACCCGGTGCCGAAA+AGG 0.441219 6_3:-79989358 Msa0960550:intron
CAGTTCATTGGTAAGAAAGA+AGG 0.442426 6_3:-79986320 Msa0960550:CDS
TTGCTGTTCTATGGTCCATC+AGG 0.446874 6_3:-79989423 Msa0960550:CDS
CAATGGTGCTTTGCTTTCCC+AGG 0.449651 6_3:-79984718 Msa0960550:three_prime_UTR
GGAAAATAGGGCTTGGAAAG+TGG 0.454758 6_3:-79989033 Msa0960550:CDS
ATGCGAGCAGCCAAACTAGA+AGG 0.460248 6_3:+79986287 None:intergenic
AATTCGCACATTAAGACAAC+GGG 0.461988 6_3:+79987473 None:intergenic
TTTAGGTTGTTTCAAGTTCG+AGG 0.467965 6_3:-79985817 Msa0960550:intron
TGCTCCACTCCATCCGCCGC+TGG 0.470316 6_3:-79990335 Msa0960550:intron
AATAGACCCATTGATACTAA+AGG 0.470695 6_3:-79988012 Msa0960550:CDS
ATACAATAAAATTGTATCCT+GGG 0.471662 6_3:+79984701 None:intergenic
CGGATGGAGTGGAGCAGAGA+TGG 0.484218 6_3:+79990342 None:intergenic
ATAGACCCATTGATACTAAA+GGG 0.485089 6_3:-79988011 Msa0960550:CDS
ATTGATACTAAAGGGAAGAA+AGG 0.491720 6_3:-79988003 Msa0960550:CDS
CTCCGCCAAATGTTTGGACC+CGG 0.492853 6_3:-79989369 Msa0960550:CDS
ATATACTCCTCCCAGTCCAT+TGG 0.499233 6_3:+79986053 None:intergenic
ATTGTTTGCTTGTCGGTGAA+AGG 0.508946 6_3:+79986080 None:intergenic
AGTGAGCAGTCGAGCTTCGG+TGG 0.509560 6_3:+79990371 None:intergenic
TAAAGAGAGCAAAGATGTTG+TGG 0.510082 6_3:-79989650 Msa0960550:exon
AAAGAGAGCAAAGATGTTGT+GGG 0.510264 6_3:-79989649 Msa0960550:exon
GCTGACCAATTGCATTCCTC+CGG 0.512269 6_3:-79985779 Msa0960550:CDS
TGAAGGTGGAAAATAGGGCT+TGG 0.512888 6_3:-79989040 Msa0960550:CDS
TTGAAGAAAGAAGCAGAAGA+AGG 0.513503 6_3:-79989673 Msa0960550:five_prime_UTR
AGGCAAGAAAACACTAATCA+TGG 0.515883 6_3:-79989397 Msa0960550:CDS
GATCTCCGGAGGAATGCAAT+TGG 0.520414 6_3:+79985774 None:intergenic
TTTACCTTCAAAATGATCTC+CGG 0.522303 6_3:+79985760 None:intergenic
TGAAGCATGAAATCTGCCAT+TGG 0.524375 6_3:-79985611 Msa0960550:CDS
CGGAGGAGCTCCGAGGTGGA+TGG 0.531079 6_3:+79990396 None:intergenic
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6_3:-79986319 Msa0960550:CDS
TGTTCTGCGGAGAGAATGCT+GGG 0.531450 6_3:+79987572 None:intergenic
GAAGCATGAAATCTGCCATT+GGG 0.532158 6_3:-79985610 Msa0960550:CDS
GCACATTAAGACAACGGGAG+CGG 0.533938 6_3:+79987478 None:intergenic
CACCGGGTCCAAACATTTGG+CGG 0.535929 6_3:+79989367 None:intergenic
CAGGAGCATAGGATGCGCCT+TGG 0.541208 6_3:-79985337 Msa0960550:CDS
CCTCATTTAACCAGGAGCAT+AGG 0.541849 6_3:-79985348 Msa0960550:intron
GAAATGACTCCAAGCGATGC+AGG 0.543849 6_3:-79988084 Msa0960550:CDS
TTCTATGGTCCATCAGGCGC+AGG 0.544328 6_3:-79989417 Msa0960550:CDS
GGGTATTTACCAGCGGCGGA+TGG 0.548055 6_3:+79990326 None:intergenic
AATTGCATCTGACATAATGA+AGG 0.551340 6_3:-79986024 Msa0960550:CDS
GCAGTCGAGCTTCGGTGGAA+CGG 0.558506 6_3:+79990376 None:intergenic
TATGCAGACTACAATCATCA+TGG 0.563605 6_3:-79984610 Msa0960550:three_prime_UTR
GCATTCTCTCCGCAGAACAA+TGG 0.564370 6_3:-79987568 Msa0960550:CDS
CGCTTGGAGTCATTTCGATG+TGG 0.565712 6_3:+79988091 None:intergenic
GGACCATAGAACAGCAAATG+AGG 0.571639 6_3:+79989429 None:intergenic
TTTACCAGCGGCGGATGGAG+TGG 0.572690 6_3:+79990331 None:intergenic
GCATAGCAGAGAAATCAAAT+CGG 0.583422 6_3:-79986268 Msa0960550:CDS
AATCAAATCGGAATTTAAGG+AGG 0.587176 6_3:-79986256 Msa0960550:CDS
CATATGTGGGAATGAGAAGG+TGG 0.593706 6_3:+79984503 None:intergenic
TGTATTTCTCCATTGTTCTG+CGG 0.594797 6_3:+79987559 None:intergenic
CTGTGACTGCGATTCTGCGA+CGG 0.607491 6_3:+79990419 None:intergenic
GTTGATGTTTCAGGTGAAGG+TGG 0.620590 6_3:-79989054 Msa0960550:intron
GTCGAGCTTCGGTGGAACGG+AGG 0.622423 6_3:+79990379 None:intergenic
GTGAACCATAACACTGTCGA+GGG 0.625900 6_3:+79989605 None:intergenic
GTTTGGGTATTTACCAGCGG+CGG 0.626387 6_3:+79990322 None:intergenic
ACCTTCAAAATGATCTCCGG+AGG 0.628271 6_3:+79985763 None:intergenic
ATCAAATCGGAATTTAAGGA+GGG 0.630327 6_3:-79986255 Msa0960550:CDS
GCCGAATGTTGCGATGAGGA+AGG 0.630554 6_3:+79984749 None:intergenic
TTACATAATATGCTGCCCAA+TGG 0.630713 6_3:+79985595 None:intergenic
GGAACGGAGGAGCTCCGAGG+TGG 0.641257 6_3:+79990392 None:intergenic
TACTCCTCCCAGTCCATTGG+GGG 0.645004 6_3:+79986056 None:intergenic
ATACTCCTCCCAGTCCATTG+GGG 0.647707 6_3:+79986055 None:intergenic
TAATTCGCACATTAAGACAA+CGG 0.648193 6_3:+79987472 None:intergenic
TGTGAACCATAACACTGTCG+AGG 0.649165 6_3:+79989604 None:intergenic
TTCAGCCGAATGTTGCGATG+AGG 0.657182 6_3:+79984745 None:intergenic
GCAGTCACAGCCATCCACCT+CGG 0.659169 6_3:-79990406 Msa0960550:five_prime_UTR
GGTGGAACGGAGGAGCTCCG+AGG 0.666148 6_3:+79990389 None:intergenic
ACATTCGGCTGAAGAAACAA+TGG 0.670874 6_3:-79984735 Msa0960550:exon
ATATGTGGGAATGAGAAGGT+GGG 0.682689 6_3:+79984504 None:intergenic
GTGGAGATTACTGTTGGACA+CGG 0.686923 6_3:+79986210 None:intergenic
AACCATATGTGGGAATGAGA+AGG 0.704061 6_3:+79984500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATTGAAAAAGAAAA+AGG + chr6_3:79984581-79984600 None:intergenic 10.0%
!! TAAAAATTGAGTTAAAAAAA+GGG + chr6_3:79984922-79984941 None:intergenic 10.0%
!!! TATTTTAAGATAATAAAAGA+AGG - chr6_3:79987134-79987153 Msa0960550:intron 10.0%
!!! ATATTTTATTTTCTATACAT+TGG - chr6_3:79990259-79990278 Msa0960550:intron 10.0%
!!! AATTTTATTGTATTAATGAT+TGG - chr6_3:79990376-79990395 Msa0960550:five_prime_UTR 10.0%
!! AAAAATTGAAAAGAAAGTTT+GGG + chr6_3:79984764-79984783 None:intergenic 15.0%
!! AAAAAATTGAAAAGAAAGTT+TGG + chr6_3:79984765-79984784 None:intergenic 15.0%
!! CTAAAAATTGAGTTAAAAAA+AGG + chr6_3:79984923-79984942 None:intergenic 15.0%
!!! AAAAGTTTCAAATTTTTGTT+TGG - chr6_3:79985578-79985597 Msa0960550:intron 15.0%
!! ATAATATGCTATTATACTTT+AGG - chr6_3:79989233-79989252 Msa0960550:intron 15.0%
!! TGAAAAATAAGAAGTAAAAA+TGG + chr6_3:79989671-79989690 None:intergenic 15.0%
!! AGTCTAGAAAAACAAAAAAA+TGG - chr6_3:79984508-79984527 Msa0960550:three_prime_UTR 20.0%
!! AAAGAAAAAGGAAAGTTAAT+AGG + chr6_3:79984569-79984588 None:intergenic 20.0%
!! AACAATAAAATACAAAACAC+TGG + chr6_3:79985298-79985317 None:intergenic 20.0%
!!! TTGATTGATTCAAATACAAA+AGG + chr6_3:79985538-79985557 None:intergenic 20.0%
!!! TTCTAAAAAAAAGACCTTTT+CGG + chr6_3:79985726-79985745 None:intergenic 20.0%
!!! TCTGAATTTTGAAAGAATTT+TGG - chr6_3:79985794-79985813 Msa0960550:CDS 20.0%
!!! CATCTAACTAAAATTACTTT+TGG + chr6_3:79985854-79985873 None:intergenic 20.0%
!! TTGTTGCAAAGTTTATTTAA+CGG - chr6_3:79986100-79986119 Msa0960550:intron 20.0%
!!! TTTTGTAAAAAACAAATCAG+TGG + chr6_3:79986288-79986307 None:intergenic 20.0%
!!! TGTTGTTTGTAAGAATAAAT+AGG - chr6_3:79986436-79986455 Msa0960550:intron 20.0%
!! TGTAAGAATAAATAGGAAAA+AGG - chr6_3:79986443-79986462 Msa0960550:intron 20.0%
!! TGGTTTCAGAATAATTATAA+AGG + chr6_3:79986589-79986608 None:intergenic 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG - chr6_3:79987027-79987046 Msa0960550:intron 20.0%
!! TTCAAAACATGAAAACTATA+AGG - chr6_3:79988000-79988019 Msa0960550:CDS 20.0%
!!! GTTCTTAAATTTTGATGTTT+TGG + chr6_3:79988050-79988069 None:intergenic 20.0%
!!! CTAGAAAAGCATTTTATAAT+CGG + chr6_3:79988486-79988505 None:intergenic 20.0%
!! GATCATCTTTATTGAATATT+TGG - chr6_3:79988694-79988713 Msa0960550:intron 20.0%
!!! ACTTCTTATTTTTCAAAGTA+AGG - chr6_3:79989676-79989695 Msa0960550:five_prime_UTR 20.0%
!!! GTATTCTTTATAATTTGCAA+TGG + chr6_3:79989847-79989866 None:intergenic 20.0%
!!! CTACTTATTTTCATTTACTT+TGG + chr6_3:79989916-79989935 None:intergenic 20.0%
!! TTTGTAAGTAAATCATAGTA+TGG + chr6_3:79989972-79989991 None:intergenic 20.0%
!! TTTGATAGATTAAACATGTT+AGG - chr6_3:79990006-79990025 Msa0960550:intron 20.0%
!! TTGATAGATTAAACATGTTA+GGG - chr6_3:79990007-79990026 Msa0960550:intron 20.0%
!!! TCTAGAGTAAAAAAAATAGA+GGG + chr6_3:79990154-79990173 None:intergenic 20.0%
!!! TTCTAGAGTAAAAAAAATAG+AGG + chr6_3:79990155-79990174 None:intergenic 20.0%
!! ATATATTGATATGTAAGTCT+TGG - chr6_3:79990210-79990229 Msa0960550:intron 20.0%
!! TATATTGATATGTAAGTCTT+GGG - chr6_3:79990211-79990230 Msa0960550:intron 20.0%
!! ATACAATAAAATTGTATCCT+GGG + chr6_3:79990369-79990388 None:intergenic 20.0%
!! AATACAATAAAATTGTATCC+TGG + chr6_3:79990370-79990389 None:intergenic 20.0%
! GATTTAAGCTGTTAATGAAA+AGG - chr6_3:79984865-79984884 Msa0960550:intron 25.0%
!!! ATTGATTTTGTCTGATTTCA+TGG - chr6_3:79985128-79985147 Msa0960550:intron 25.0%
!! TTGATTTTGTCTGATTTCAT+GGG - chr6_3:79985129-79985148 Msa0960550:intron 25.0%
! TGAAATGAGTGACAAAAAAA+GGG + chr6_3:79985749-79985768 None:intergenic 25.0%
!!! TGTATCTTTGAGTTTTTGAT+TGG - chr6_3:79985908-79985927 Msa0960550:intron 25.0%
! TCAACAAAGACAATTTAGAA+TGG + chr6_3:79985998-79986017 None:intergenic 25.0%
! AGTGGTCAATAATAATATTC+AGG + chr6_3:79986192-79986211 None:intergenic 25.0%
! ACTCTTCTCTATCAATATAT+TGG + chr6_3:79986230-79986249 None:intergenic 25.0%
! ATTTCAGTAAACATTGCTAT+AGG - chr6_3:79986321-79986340 Msa0960550:CDS 25.0%
! CGTATTATACTTATGAAATG+TGG - chr6_3:79986678-79986697 Msa0960550:intron 25.0%
! ATACTTATGAAATGTGGAAT+TGG - chr6_3:79986684-79986703 Msa0960550:intron 25.0%
! TACTTATGAAATGTGGAATT+GGG - chr6_3:79986685-79986704 Msa0960550:intron 25.0%
!!! GTTTATTTTTTCTGAGTAGA+AGG + chr6_3:79986755-79986774 None:intergenic 25.0%
! ACATAATATTGGAATTTCCA+AGG + chr6_3:79986820-79986839 None:intergenic 25.0%
! AATAAAAGAAGGAATCTTCA+TGG - chr6_3:79987145-79987164 Msa0960550:intron 25.0%
! GGAAAAAAATTCCAAAACAT+AGG + chr6_3:79987694-79987713 None:intergenic 25.0%
! CTCAAATCATGAAAACTATA+AGG - chr6_3:79987915-79987934 Msa0960550:intron 25.0%
! AAAACTATAAGGAAACCATA+CGG - chr6_3:79987926-79987945 Msa0960550:intron 25.0%
!!! GTTCTTGAATTTTGATGTTT+TGG + chr6_3:79987965-79987984 None:intergenic 25.0%
! AAACATCAAAATTCAAGAAC+TGG - chr6_3:79987965-79987984 Msa0960550:intron 25.0%
! AAAACTATAAGGAAACCATA+CGG - chr6_3:79987926-79987945 Msa0960550:intron 25.0%
! AAAATGCAGATTAAGAAACT+TGG - chr6_3:79988443-79988462 Msa0960550:intron 25.0%
! AGAAATCAAATCGGAATTTA+AGG - chr6_3:79988808-79988827 Msa0960550:intron 25.0%
!! TATCAAAAGCAAACCTTTTT+GGG + chr6_3:79989076-79989095 None:intergenic 25.0%
!! CATTAACTAGTCTAATATCA+AGG + chr6_3:79989630-79989649 None:intergenic 25.0%
!! CTTGATATTAGACTAGTTAA+TGG - chr6_3:79989628-79989647 Msa0960550:CDS 25.0%
!! ATCTGAATGTTTGAAATAGT+TGG - chr6_3:79989787-79989806 Msa0960550:intron 25.0%
!! TCTGAATGTTTGAAATAGTT+GGG - chr6_3:79989788-79989807 Msa0960550:intron 25.0%
! TGGACAAATATTACAAATGT+TGG - chr6_3:79990036-79990055 Msa0960550:intron 25.0%
! GGACAAATATTACAAATGTT+GGG - chr6_3:79990037-79990056 Msa0960550:intron 25.0%
!! TATAGCTATTGCTTTATTCA+AGG - chr6_3:79990180-79990199 Msa0960550:intron 25.0%
! CAATAGTTTCTCAATTTTGG+CGG - chr6_3:79984533-79984552 Msa0960550:three_prime_UTR 30.0%
!! AATAGTTTCTCAATTTTGGC+GGG - chr6_3:79984534-79984553 Msa0960550:three_prime_UTR 30.0%
! TGATTTTGTCTGATTTCATG+GGG - chr6_3:79985130-79985149 Msa0960550:intron 30.0%
TGCTCAAAATCTCAAGAAAT+TGG - chr6_3:79985493-79985512 Msa0960550:intron 30.0%
GTGAAATGAGTGACAAAAAA+AGG + chr6_3:79985750-79985769 None:intergenic 30.0%
ACACAAGGATTGTATTCTTA+GGG + chr6_3:79985826-79985845 None:intergenic 30.0%
ATTGTCTTTGTTGATGTTTC+AGG - chr6_3:79986004-79986023 Msa0960550:intron 30.0%
! AAGAAAAGGGAAGTATGAAA+AGG + chr6_3:79986074-79986093 None:intergenic 30.0%
GCAACAAAACAGAAAGAAAA+GGG + chr6_3:79986087-79986106 None:intergenic 30.0%
TGCAACAAAACAGAAAGAAA+AGG + chr6_3:79986088-79986107 None:intergenic 30.0%
AAGCACTCTAACATTTGTAT+AGG - chr6_3:79986123-79986142 Msa0960550:intron 30.0%
CTCTAACATTTGTATAGGTT+AGG - chr6_3:79986128-79986147 Msa0960550:intron 30.0%
AATATCATTGTCTTGATCCT+TGG - chr6_3:79986800-79986819 Msa0960550:intron 30.0%
AAATGCAGTGCACATAATAT+TGG + chr6_3:79986831-79986850 None:intergenic 30.0%
! TGAATCATTGGTGTCTTATT+TGG - chr6_3:79986862-79986881 Msa0960550:intron 30.0%
AATAGACCCATTGATACTAA+AGG - chr6_3:79987055-79987074 Msa0960550:intron 30.0%
ATAGACCCATTGATACTAAA+GGG - chr6_3:79987056-79987075 Msa0960550:intron 30.0%
TTCTTCCCTTTAGTATCAAT+GGG + chr6_3:79987064-79987083 None:intergenic 30.0%
TTTCTTCCCTTTAGTATCAA+TGG + chr6_3:79987065-79987084 None:intergenic 30.0%
ATTGATACTAAAGGGAAGAA+AGG - chr6_3:79987064-79987083 Msa0960550:intron 30.0%
AAAGGGAAGAAAGGATTTAA+AGG - chr6_3:79987073-79987092 Msa0960550:intron 30.0%
AGAAAGGATTTAAAGGTAAC+CGG - chr6_3:79987080-79987099 Msa0960550:intron 30.0%
AGTTTAACAACAAAAACAGC+CGG + chr6_3:79987102-79987121 None:intergenic 30.0%
TGACTGTGTATAATGATGTT+TGG - chr6_3:79987243-79987262 Msa0960550:intron 30.0%
TTTACCTGTGTAATGCTTTA+AGG - chr6_3:79987281-79987300 Msa0960550:intron 30.0%
TAATTCGCACATTAAGACAA+CGG + chr6_3:79987598-79987617 None:intergenic 30.0%
AACAGATTCCATTATTTCCT+TGG + chr6_3:79987670-79987689 None:intergenic 30.0%
ATAGAACAACATTCATCTAC+TGG + chr6_3:79987825-79987844 None:intergenic 30.0%
TAGATGAATGTTGTTCTATG+AGG - chr6_3:79987826-79987845 Msa0960550:intron 30.0%
TATAAGTCCATGCTTCATAA+GGG - chr6_3:79987882-79987901 Msa0960550:intron 30.0%
! AGTTTTCATGATTTGAGCTT+AGG + chr6_3:79987912-79987931 None:intergenic 30.0%
AAACTATAAGGAAACCATAC+GGG - chr6_3:79987927-79987946 Msa0960550:intron 30.0%
! GTAGAATGTCTTGTTAACTT+GGG + chr6_3:79988128-79988147 None:intergenic 30.0%
! AGTAGAATGTCTTGTTAACT+TGG + chr6_3:79988129-79988148 None:intergenic 30.0%
!! AAGACATTCTACTGACTTAT+TGG - chr6_3:79988136-79988155 Msa0960550:CDS 30.0%
CAATATTAAGCATGTTCTCT+GGG + chr6_3:79988165-79988184 None:intergenic 30.0%
TCAATATTAAGCATGTTCTC+TGG + chr6_3:79988166-79988185 None:intergenic 30.0%
AAGGAATCTTACATAGGATT+GGG + chr6_3:79988191-79988210 None:intergenic 30.0%
TAAGGAATCTTACATAGGAT+TGG + chr6_3:79988192-79988211 None:intergenic 30.0%
ATCAACATTCTTAGGAGAAA+TGG + chr6_3:79988253-79988272 None:intergenic 30.0%
! CCTAAGAATGTTGATTATGA+CGG - chr6_3:79988258-79988277 Msa0960550:intron 30.0%
TGAAATAATTCCGAAATGCA+TGG - chr6_3:79988370-79988389 Msa0960550:intron 30.0%
ATTAAGAAACTTGGAAAGGA+AGG - chr6_3:79988452-79988471 Msa0960550:intron 30.0%
! TGCTTTTCTAGATATACTGA+AGG - chr6_3:79988495-79988514 Msa0960550:intron 30.0%
TGATATTACTTTCTGCGATT+TGG - chr6_3:79988522-79988541 Msa0960550:intron 30.0%
! TTCTAAGGATTATATCTGCT+TGG - chr6_3:79988555-79988574 Msa0960550:intron 30.0%
TTAACATCCAACTTATAGAG+TGG + chr6_3:79988621-79988640 None:intergenic 30.0%
TGAATATTTGGAAATCCATG+TGG - chr6_3:79988706-79988725 Msa0960550:intron 30.0%
! GTTGAAGTTTTACAGTTCAT+TGG - chr6_3:79988735-79988754 Msa0960550:intron 30.0%
AGTTCATTGGTAAGAAAGAA+GGG - chr6_3:79988748-79988767 Msa0960550:intron 30.0%
AATCAAATCGGAATTTAAGG+AGG - chr6_3:79988811-79988830 Msa0960550:intron 30.0%
ATCAAATCGGAATTTAAGGA+GGG - chr6_3:79988812-79988831 Msa0960550:intron 30.0%
ACATGCTTCCAATTTAATCT+GGG - chr6_3:79988878-79988897 Msa0960550:intron 30.0%
TTATGCATCCCAGATTAAAT+TGG + chr6_3:79988889-79988908 None:intergenic 30.0%
! CTTCTCAAAGCTTTTCTTTA+AGG - chr6_3:79988925-79988944 Msa0960550:intron 30.0%
!! AAGCTTTTCTTTAAGGAAGA+AGG - chr6_3:79988932-79988951 Msa0960550:intron 30.0%
AATTGCATCTGACATAATGA+AGG - chr6_3:79989043-79989062 Msa0960550:CDS 30.0%
! GTATCAAAAGCAAACCTTTT+TGG + chr6_3:79989077-79989096 None:intergenic 30.0%
AGTTGACAAAACAATCAAGT+AGG + chr6_3:79989169-79989188 None:intergenic 30.0%
TTTACCTTCAAAATGATCTC+CGG + chr6_3:79989310-79989329 None:intergenic 30.0%
TTGGGTAAAACATATACAGA+AGG + chr6_3:79989572-79989591 None:intergenic 30.0%
! AAAGCAATTTTTCACATCGA+AGG - chr6_3:79989757-79989776 Msa0960550:intron 30.0%
CAAATTAAGGATGCAATTGA+TGG + chr6_3:79989871-79989890 None:intergenic 30.0%
! ATTTACTTTGGAGACAAACT+AGG + chr6_3:79989904-79989923 None:intergenic 30.0%
AGCATAGAAAATGCAAATTC+AGG - chr6_3:79990091-79990110 Msa0960550:intron 30.0%
GCATAGAAAATGCAAATTCA+GGG - chr6_3:79990092-79990111 Msa0960550:intron 30.0%
ATCAGCAAGCAAATATTGTA+TGG + chr6_3:79990238-79990257 None:intergenic 30.0%
! ATGGAAGATTTCTGATGTTT+TGG - chr6_3:79990476-79990495 Msa0960550:five_prime_UTR 30.0%
! GCGCAATAGTTTCTCAATTT+TGG - chr6_3:79984530-79984549 Msa0960550:three_prime_UTR 35.0%
AAAGTTTGGGTATTTACCAG+CGG + chr6_3:79984751-79984770 None:intergenic 35.0%
! GATTTTGTCTGATTTCATGG+GGG - chr6_3:79985131-79985150 Msa0960550:intron 35.0%
!! ATAGATAAAGGAGTGTCAAC+GGG + chr6_3:79985326-79985345 None:intergenic 35.0%
!! CATAGATAAAGGAGTGTCAA+CGG + chr6_3:79985327-79985346 None:intergenic 35.0%
AGACTCACTATATCCAACAA+AGG + chr6_3:79985357-79985376 None:intergenic 35.0%
TTGAAGAAAGAAGCAGAAGA+AGG - chr6_3:79985394-79985413 Msa0960550:intron 35.0%
TAAAGAGAGCAAAGATGTTG+TGG - chr6_3:79985417-79985436 Msa0960550:intron 35.0%
AAAGAGAGCAAAGATGTTGT+GGG - chr6_3:79985418-79985437 Msa0960550:intron 35.0%
AGGCAAGAAAACACTAATCA+TGG - chr6_3:79985670-79985689 Msa0960550:intron 35.0%
CACACAAGGATTGTATTCTT+AGG + chr6_3:79985827-79985846 None:intergenic 35.0%
! TTTGTTGATGTTTCAGGTGA+AGG - chr6_3:79986010-79986029 Msa0960550:CDS 35.0%
AGACATTGCTCACTAACTAA+GGG + chr6_3:79986168-79986187 None:intergenic 35.0%
TGGAACTGTTTGACAATAAG+TGG + chr6_3:79986210-79986229 None:intergenic 35.0%
!! GTGGTAAGTTGATATCGATA+AGG + chr6_3:79986269-79986288 None:intergenic 35.0%
AAACATTGCTATAGGATGAG+AGG - chr6_3:79986329-79986348 Msa0960550:CDS 35.0%
GGAAAAAGGCAAGTCATAAT+TGG - chr6_3:79986457-79986476 Msa0960550:intron 35.0%
ACAACCACTCAATAACTTCT+AGG + chr6_3:79986486-79986505 None:intergenic 35.0%
AGAAGTTATTGAGTGGTTGT+TGG - chr6_3:79986486-79986505 Msa0960550:intron 35.0%
GAAGTTATTGAGTGGTTGTT+GGG - chr6_3:79986487-79986506 Msa0960550:intron 35.0%
AAGATGTAGAACAAAGACAC+AGG + chr6_3:79986562-79986581 None:intergenic 35.0%
TGCAAGAACACACAATACAA+TGG + chr6_3:79986609-79986628 None:intergenic 35.0%
TGTGTGTTCTTGCAATATTC+TGG - chr6_3:79986615-79986634 Msa0960550:intron 35.0%
GAACTATTTCCAGAACTGTT+TGG - chr6_3:79986642-79986661 Msa0960550:intron 35.0%
AAACTGATACCAAACAGTTC+TGG + chr6_3:79986654-79986673 None:intergenic 35.0%
TTTGCAACTGTTCTGACTAT+AGG - chr6_3:79986710-79986729 Msa0960550:intron 35.0%
!!! AGTAGAAGGCATTCATTTTG+AGG + chr6_3:79986741-79986760 None:intergenic 35.0%
TTCTCTGTGAACTGAATCAT+TGG - chr6_3:79986850-79986869 Msa0960550:intron 35.0%
GTGTATAATGATGTTTGGTC+TGG - chr6_3:79987248-79987267 Msa0960550:intron 35.0%
TGTATTTCTCCATTGTTCTG+CGG + chr6_3:79987511-79987530 None:intergenic 35.0%
AATTCGCACATTAAGACAAC+GGG + chr6_3:79987597-79987616 None:intergenic 35.0%
CTATTTACCTGTTCTTCACT+TGG + chr6_3:79987626-79987645 None:intergenic 35.0%
TGTAGTGTCCAAGGAAATAA+TGG - chr6_3:79987659-79987678 Msa0960550:intron 35.0%
! GGAATCTGTTTCCTATGTTT+TGG - chr6_3:79987680-79987699 Msa0960550:intron 35.0%
CCTCAATGCTAAAAAACAAG+GGG + chr6_3:79987715-79987734 None:intergenic 35.0%
GCCTCAATGCTAAAAAACAA+GGG + chr6_3:79987716-79987735 None:intergenic 35.0%
TGCCTCAATGCTAAAAAACA+AGG + chr6_3:79987717-79987736 None:intergenic 35.0%
! ATTGAGGCAATTGTTTTCTC+TGG - chr6_3:79987728-79987747 Msa0960550:intron 35.0%
ATGAATGTTGTTCTATGAGG+TGG - chr6_3:79987829-79987848 Msa0960550:intron 35.0%
GTATAAGTCCATGCTTCATA+AGG - chr6_3:79987881-79987900 Msa0960550:intron 35.0%
AGGAATCTTACATAGGATTG+GGG + chr6_3:79988190-79988209 None:intergenic 35.0%
GCACATAAGGAATCTTACAT+AGG + chr6_3:79988197-79988216 None:intergenic 35.0%
ATTCTTAGGAGAAATGGTCT+TGG + chr6_3:79988247-79988266 None:intergenic 35.0%
CCGTCATAATCAACATTCTT+AGG + chr6_3:79988261-79988280 None:intergenic 35.0%
! AATAATGCCCAACATTGACT+TGG + chr6_3:79988404-79988423 None:intergenic 35.0%
!!! CTGCATTTTTTAGTATGTCC+TGG + chr6_3:79988432-79988451 None:intergenic 35.0%
GCAGATTAAGAAACTTGGAA+AGG - chr6_3:79988448-79988467 Msa0960550:intron 35.0%
TTTGGTCAAGTTCTCTTCTA+AGG - chr6_3:79988540-79988559 Msa0960550:intron 35.0%
AGCATTTCCACTCTATAAGT+TGG - chr6_3:79988611-79988630 Msa0960550:intron 35.0%
CAGTTCATTGGTAAGAAAGA+AGG - chr6_3:79988747-79988766 Msa0960550:intron 35.0%
GCATAGCAGAGAAATCAAAT+CGG - chr6_3:79988799-79988818 Msa0960550:intron 35.0%
GCAAGTCTCAAATGACAATA+TGG + chr6_3:79988838-79988857 None:intergenic 35.0%
! CAGATTAAATTGGAAGCATG+TGG + chr6_3:79988879-79988898 None:intergenic 35.0%
CACATGCTTCCAATTTAATC+TGG - chr6_3:79988877-79988896 Msa0960550:intron 35.0%
TGACAAAACAATCAAGTAGG+CGG + chr6_3:79989166-79989185 None:intergenic 35.0%
!! TTTAGGTTGTTTCAAGTTCG+AGG - chr6_3:79989250-79989269 Msa0960550:intron 35.0%
GACTTCTTTATGAGCTATTG+AGG - chr6_3:79989417-79989436 Msa0960550:CDS 35.0%
TTATGAGCTATTGAGGAAAC+TGG - chr6_3:79989424-79989443 Msa0960550:CDS 35.0%
TTACATAATATGCTGCCCAA+TGG + chr6_3:79989475-79989494 None:intergenic 35.0%
AGTCTAATATCAAGGCAATG+AGG + chr6_3:79989622-79989641 None:intergenic 35.0%
GAAAAATTGCTTTCTGTCCA+AGG + chr6_3:79989750-79989769 None:intergenic 35.0%
AGGAGAGAATGTGCAAATTA+AGG + chr6_3:79989884-79989903 None:intergenic 35.0%
TAAACATGTTAGGGACTAAC+TGG - chr6_3:79990016-79990035 Msa0960550:intron 35.0%
TGCAAATTCAGGGACAAAAA+TGG - chr6_3:79990102-79990121 Msa0960550:intron 35.0%
AAATTCAGGGACAAAAATGG+TGG - chr6_3:79990105-79990124 Msa0960550:intron 35.0%
TCTCTCATCTTCTCAACTTA+AGG - chr6_3:79990421-79990440 Msa0960550:five_prime_UTR 35.0%
TATGCAGACTACAATCATCA+TGG - chr6_3:79990457-79990476 Msa0960550:five_prime_UTR 35.0%
ATTTCATGGGGGATAAGGAA+TGG - chr6_3:79985142-79985161 Msa0960550:intron 40.0%
!! TTCGGTGCTATATTAGGCTT+AGG + chr6_3:79985182-79985201 None:intergenic 40.0%
! CCTAATATAGCACCGAAACA+CGG - chr6_3:79985185-79985204 Msa0960550:intron 40.0%
TAACAAGATTCGCCGTGTTT+CGG + chr6_3:79985200-79985219 None:intergenic 40.0%
!! TAGATAAAGGAGTGTCAACG+GGG + chr6_3:79985325-79985344 None:intergenic 40.0%
CGTTGACACTCCTTTATCTA+TGG - chr6_3:79985325-79985344 Msa0960550:CDS 40.0%
CACTCCTTTATCTATGGTTG+TGG - chr6_3:79985331-79985350 Msa0960550:CDS 40.0%
AAGGCCACAACCATAGATAA+AGG + chr6_3:79985338-79985357 None:intergenic 40.0%
! ATAACACTGTCGAGGGTTTT+GGG + chr6_3:79985458-79985477 None:intergenic 40.0%
!! TGTCCTCATTTGCTGTTCTA+TGG - chr6_3:79985635-79985654 Msa0960550:CDS 40.0%
! AAAAAAGACCTTTTCGGCAC+CGG + chr6_3:79985720-79985739 None:intergenic 40.0%
!!! TTACTTTTGGTGCTCACACA+AGG + chr6_3:79985841-79985860 None:intergenic 40.0%
GCAAGAAGTAACAGTAGTTC+TGG + chr6_3:79985960-79985979 None:intergenic 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG - chr6_3:79986021-79986040 Msa0960550:CDS 40.0%
TCAGGTGAAGGTGGAAAATA+GGG - chr6_3:79986022-79986041 Msa0960550:CDS 40.0%
CAGACATTGCTCACTAACTA+AGG + chr6_3:79986169-79986188 None:intergenic 40.0%
ATTGCTATAGGATGAGAGGT+AGG - chr6_3:79986333-79986352 Msa0960550:CDS 40.0%
!! AAACTGACTCTGGTCAGTTT+TGG + chr6_3:79986368-79986387 None:intergenic 40.0%
GTTGCCTAGAAGTTATTGAG+TGG - chr6_3:79986479-79986498 Msa0960550:intron 40.0%
TTATTGAGTGGTTGTTGGGT+GGG - chr6_3:79986491-79986510 Msa0960550:intron 40.0%
AGAACCAAGCTCTCAAATCT+TGG - chr6_3:79986524-79986543 Msa0960550:intron 40.0%
TAGAACAAAGACACAGGACA+TGG + chr6_3:79986556-79986575 None:intergenic 40.0%
GTGTTCTTGCAATATTCTGG+CGG - chr6_3:79986618-79986637 Msa0960550:intron 40.0%
!! AGTACTTGAGCACTGTTTTC+AGG - chr6_3:79986904-79986923 Msa0960550:intron 40.0%
TCTTCATGGTCAACAAACAG+TGG - chr6_3:79987159-79987178 Msa0960550:intron 40.0%
! AGAGCCTTAAAGCATTACAC+AGG + chr6_3:79987288-79987307 None:intergenic 40.0%
AATAAGAAACCTCTCCACCT+TGG - chr6_3:79987328-79987347 Msa0960550:intron 40.0%
TAATGCACCAAGTGAAGAAC+AGG - chr6_3:79987616-79987635 Msa0960550:intron 40.0%
! GAAGTTTTCTGTAGTGTCCA+AGG - chr6_3:79987650-79987669 Msa0960550:intron 40.0%
!!! CCCCTTGTTTTTTAGCATTG+AGG - chr6_3:79987712-79987731 Msa0960550:intron 40.0%
! AGGCAATTGTTTTCTCTGGT+AGG - chr6_3:79987732-79987751 Msa0960550:intron 40.0%
! GGCAATTGTTTTCTCTGGTA+GGG - chr6_3:79987733-79987752 Msa0960550:intron 40.0%
GGAATCTTACATAGGATTGG+GGG + chr6_3:79988189-79988208 None:intergenic 40.0%
!! ATGGTCTTGGAAGTGCTAAA+AGG + chr6_3:79988234-79988253 None:intergenic 40.0%
CGGAATTATTTCAGCCTATG+AGG + chr6_3:79988363-79988382 None:intergenic 40.0%
AGAATCCACCAAGTCAATGT+TGG - chr6_3:79988393-79988412 Msa0960550:intron 40.0%
GAATCCACCAAGTCAATGTT+GGG - chr6_3:79988394-79988413 Msa0960550:intron 40.0%
AGAAACTTGGAAAGGAAGGT+TGG - chr6_3:79988456-79988475 Msa0960550:intron 40.0%
GAAACTTGGAAAGGAAGGTT+GGG - chr6_3:79988457-79988476 Msa0960550:intron 40.0%
AACTTCAACAATCTGCCACA+TGG + chr6_3:79988724-79988743 None:intergenic 40.0%
AAGCATGTGGAGATTACTGT+TGG + chr6_3:79988866-79988885 None:intergenic 40.0%
!! ACAGCTCATGTGTTACTTGT+AGG - chr6_3:79988961-79988980 Msa0960550:intron 40.0%
ATTGTTTGCTTGTCGGTGAA+AGG + chr6_3:79988990-79989009 None:intergenic 40.0%
GGCGGTTATAAAAACTGACA+AGG + chr6_3:79989148-79989167 None:intergenic 40.0%
TGAAGCATGAAATCTGCCAT+TGG - chr6_3:79989456-79989475 Msa0960550:intron 40.0%
GAAGCATGAAATCTGCCATT+GGG - chr6_3:79989457-79989476 Msa0960550:intron 40.0%
AGTATCTTCTGCATGAACTC+AGG - chr6_3:79989546-79989565 Msa0960550:intron 40.0%
! TTACCCAATTTGATAGCTCG+CGG - chr6_3:79989584-79989603 Msa0960550:CDS 40.0%
TTCTTTCCCCTCATTTAACC+AGG - chr6_3:79989711-79989730 Msa0960550:intron 40.0%
TATGCTCCTGGTTAAATGAG+GGG + chr6_3:79989720-79989739 None:intergenic 40.0%
CTATGCTCCTGGTTAAATGA+GGG + chr6_3:79989721-79989740 None:intergenic 40.0%
CTATACATTGGCAGCATTTG+TGG - chr6_3:79990271-79990290 Msa0960550:intron 40.0%
ACATTCGGCTGAAGAAACAA+TGG - chr6_3:79990332-79990351 Msa0960550:intron 40.0%
GTCTGATTTCATGGGGGATA+AGG - chr6_3:79985137-79985156 Msa0960550:intron 45.0%
!! CCGTGTTTCGGTGCTATATT+AGG + chr6_3:79985188-79985207 None:intergenic 45.0%
ACAAAACACTGGCACAGACA+CGG + chr6_3:79985287-79985306 None:intergenic 45.0%
TCTATGGTTGTGGCCTTTGT+TGG - chr6_3:79985341-79985360 Msa0960550:intron 45.0%
! CATAACACTGTCGAGGGTTT+TGG + chr6_3:79985459-79985478 None:intergenic 45.0%
CAAAACCCTCGACAGTGTTA+TGG - chr6_3:79985457-79985476 Msa0960550:intron 45.0%
GTGAACCATAACACTGTCGA+GGG + chr6_3:79985465-79985484 None:intergenic 45.0%
TGTGAACCATAACACTGTCG+AGG + chr6_3:79985466-79985485 None:intergenic 45.0%
AGTGACCTGCAACAACACAT+CGG + chr6_3:79985606-79985625 None:intergenic 45.0%
GGACCATAGAACAGCAAATG+AGG + chr6_3:79985641-79985660 None:intergenic 45.0%
! TTGCTGTTCTATGGTCCATC+AGG - chr6_3:79985644-79985663 Msa0960550:CDS 45.0%
! AAAAAGACCTTTTCGGCACC+GGG + chr6_3:79985719-79985738 None:intergenic 45.0%
! GTTGATGTTTCAGGTGAAGG+TGG - chr6_3:79986013-79986032 Msa0960550:CDS 45.0%
TGAAGGTGGAAAATAGGGCT+TGG - chr6_3:79986027-79986046 Msa0960550:CDS 45.0%
GGAAAATAGGGCTTGGAAAG+TGG - chr6_3:79986034-79986053 Msa0960550:CDS 45.0%
CGATAAGGTTGCTCATTCTC+TGG + chr6_3:79986254-79986273 None:intergenic 45.0%
! CTGACCAGAGTCAGTTTTTG+TGG - chr6_3:79986371-79986390 Msa0960550:intron 45.0%
! ACTGCCACAAAAACTGACTC+TGG + chr6_3:79986378-79986397 None:intergenic 45.0%
GTTATTGAGTGGTTGTTGGG+TGG - chr6_3:79986490-79986509 Msa0960550:intron 45.0%
CCTACCAAGATTTGAGAGCT+TGG + chr6_3:79986531-79986550 None:intergenic 45.0%
CCAAGCTCTCAAATCTTGGT+AGG - chr6_3:79986528-79986547 Msa0960550:intron 45.0%
AGTAATACTGCAAGCCAAGG+TGG + chr6_3:79987345-79987364 None:intergenic 45.0%
TGCAGTAATACTGCAAGCCA+AGG + chr6_3:79987348-79987367 None:intergenic 45.0%
AAGTCCATGCTTCATAAGGG+AGG - chr6_3:79987885-79987904 Msa0960550:intron 45.0%
AGTCCATGCTTCATAAGGGA+GGG - chr6_3:79987886-79987905 Msa0960550:intron 45.0%
GGTAGCGAAACAAACTACTC+TGG + chr6_3:79988107-79988126 None:intergenic 45.0%
!! TTGGAAGTGCTAAAAGGTGC+CGG + chr6_3:79988228-79988247 None:intergenic 45.0%
ATATCCTCTCTCCCTAACCA+AGG - chr6_3:79988308-79988327 Msa0960550:intron 45.0%
TATCCTCTCTCCCTAACCAA+GGG - chr6_3:79988309-79988328 Msa0960550:intron 45.0%
AGAAGGTCTACCCTTGGTTA+GGG + chr6_3:79988322-79988341 None:intergenic 45.0%
TAGAAGGTCTACCCTTGGTT+AGG + chr6_3:79988323-79988342 None:intergenic 45.0%
!! AGCCTATGAGGCTGATTTGT+GGG + chr6_3:79988351-79988370 None:intergenic 45.0%
! GGTGGATTCTCCATGCATTT+CGG + chr6_3:79988383-79988402 None:intergenic 45.0%
!! AATGCCCAACATTGACTTGG+TGG + chr6_3:79988401-79988420 None:intergenic 45.0%
GTTGGGCATTATTGTTTGCC+AGG - chr6_3:79988411-79988430 Msa0960550:intron 45.0%
! GCTGCAACTTCCTTCTAGTT+TGG - chr6_3:79988770-79988789 Msa0960550:intron 45.0%
GTGGAGATTACTGTTGGACA+CGG + chr6_3:79988860-79988879 None:intergenic 45.0%
TGGGGGAATTGTTTGCTTGT+CGG + chr6_3:79988997-79989016 None:intergenic 45.0%
CAAGCAAACAATTCCCCCAA+TGG - chr6_3:79988998-79989017 Msa0960550:intron 45.0%
AAACAATTCCCCCAATGGAC+TGG - chr6_3:79989003-79989022 Msa0960550:intron 45.0%
! AACAATTCCCCCAATGGACT+GGG - chr6_3:79989004-79989023 Msa0960550:intron 45.0%
TATACTCCTCCCAGTCCATT+GGG + chr6_3:79989016-79989035 None:intergenic 45.0%
ATATACTCCTCCCAGTCCAT+TGG + chr6_3:79989017-79989036 None:intergenic 45.0%
TGAAGGAACAGAGCCCAAAA+AGG - chr6_3:79989060-79989079 Msa0960550:intron 45.0%
! TCCTCCGGAGATCATTTTGA+AGG - chr6_3:79989303-79989322 Msa0960550:intron 45.0%
ACCTTCAAAATGATCTCCGG+AGG + chr6_3:79989307-79989326 None:intergenic 45.0%
GTTCCGCGAGCTATCAAATT+GGG + chr6_3:79989590-79989609 None:intergenic 45.0%
TGTTCCGCGAGCTATCAAAT+TGG + chr6_3:79989591-79989610 None:intergenic 45.0%
CCTATGCTCCTGGTTAAATG+AGG + chr6_3:79989722-79989741 None:intergenic 45.0%
! CCTCATTTAACCAGGAGCAT+AGG - chr6_3:79989719-79989738 Msa0960550:intron 45.0%
TCCTTCCTCATCGCAACATT+CGG - chr6_3:79990317-79990336 Msa0960550:intron 45.0%
GTTTGGGTATTTACCAGCGG+CGG + chr6_3:79984748-79984767 None:intergenic 50.0%
!! TAAAGGAGTGTCAACGGGGA+GGG + chr6_3:79985321-79985340 None:intergenic 50.0%
!! ATAAAGGAGTGTCAACGGGG+AGG + chr6_3:79985322-79985341 None:intergenic 50.0%
! TGGATCCGATGTGTTGTTGC+AGG - chr6_3:79985598-79985617 Msa0960550:intron 50.0%
GCTCTTCTCCGCCAAATGTT+TGG - chr6_3:79985692-79985711 Msa0960550:intron 50.0%
!! CTGGTCAGTTTTGGCCTTCT+AGG + chr6_3:79986359-79986378 None:intergenic 50.0%
!! CTTGAGCACTGTTTTCAGGC+TGG - chr6_3:79986908-79986927 Msa0960550:intron 50.0%
CGCTTGGAGTCATTTCGATG+TGG + chr6_3:79986979-79986998 None:intergenic 50.0%
GAAATGACTCCAAGCGATGC+AGG - chr6_3:79986983-79987002 Msa0960550:intron 50.0%
TGTTCTGCGGAGAGAATGCT+GGG + chr6_3:79987498-79987517 None:intergenic 50.0%
TTGTTCTGCGGAGAGAATGC+TGG + chr6_3:79987499-79987518 None:intergenic 50.0%
GCATTCTCTCCGCAGAACAA+TGG - chr6_3:79987499-79987518 Msa0960550:CDS 50.0%
GCACATTAAGACAACGGGAG+CGG + chr6_3:79987592-79987611 None:intergenic 50.0%
GGCAATAGCTGCTAACCGTA+TGG + chr6_3:79987944-79987963 None:intergenic 50.0%
GGCAATAGCTACTACCCGTA+TGG + chr6_3:79988029-79988048 None:intergenic 50.0%
TCCTTATGTGCTTCACCGAC+CGG - chr6_3:79988206-79988225 Msa0960550:intron 50.0%
!! AAGTGCTAAAAGGTGCCGGT+CGG + chr6_3:79988224-79988243 None:intergenic 50.0%
GGTTAGGGAGAGAGGATATC+AGG + chr6_3:79988307-79988326 None:intergenic 50.0%
!! TGATTTGTGGGGGCACTAGA+AGG + chr6_3:79988339-79988358 None:intergenic 50.0%
!! CCTATGAGGCTGATTTGTGG+GGG + chr6_3:79988349-79988368 None:intergenic 50.0%
!! GCCTATGAGGCTGATTTGTG+GGG + chr6_3:79988350-79988369 None:intergenic 50.0%
!! CAGCCTATGAGGCTGATTTG+TGG + chr6_3:79988352-79988371 None:intergenic 50.0%
ATGCGAGCAGCCAAACTAGA+AGG + chr6_3:79988783-79988802 None:intergenic 50.0%
ATACTCCTCCCAGTCCATTG+GGG + chr6_3:79989015-79989034 None:intergenic 50.0%
GCTGACCAATTGCATTCCTC+CGG - chr6_3:79989288-79989307 Msa0960550:intron 50.0%
GATCTCCGGAGGAATGCAAT+TGG + chr6_3:79989296-79989315 None:intergenic 50.0%
TTCAGCCGAATGTTGCGATG+AGG + chr6_3:79990325-79990344 None:intergenic 50.0%
CAATGGTGCTTTGCTTTCCC+AGG - chr6_3:79990349-79990368 Msa0960550:five_prime_UTR 50.0%
TGCGATTCTGCGACGGTCTA+GGG + chr6_3:79984644-79984663 None:intergenic 55.0%
CTGTGACTGCGATTCTGCGA+CGG + chr6_3:79984651-79984670 None:intergenic 55.0%
GAGAGTGAGCAGTCGAGCTT+CGG + chr6_3:79984702-79984721 None:intergenic 55.0%
TTCTATGGTCCATCAGGCGC+AGG - chr6_3:79985650-79985669 Msa0960550:CDS 55.0%
! GTTTTCTTGCCTGCGCCTGA+TGG + chr6_3:79985662-79985681 None:intergenic 55.0%
CTCCGCCAAATGTTTGGACC+CGG - chr6_3:79985698-79985717 Msa0960550:intron 55.0%
CACCGGGTCCAAACATTTGG+CGG + chr6_3:79985703-79985722 None:intergenic 55.0%
GGATGAGAGGTAGGCCTAGA+AGG - chr6_3:79986342-79986361 Msa0960550:intron 55.0%
TGGTTGTTGGGTGGGACTGT+GGG - chr6_3:79986499-79986518 Msa0960550:intron 55.0%
TCCAAGCGATGCAGGCTTTC+AGG - chr6_3:79986991-79987010 Msa0960550:intron 55.0%
TCCTGAAAGCCTGCATCGCT+TGG + chr6_3:79986995-79987014 None:intergenic 55.0%
TACTGCAAGCCAAGGTGGAG+AGG + chr6_3:79987340-79987359 None:intergenic 55.0%
AGGCCCTCCCTTATGAAGCA+TGG + chr6_3:79987892-79987911 None:intergenic 55.0%
CTACCCTTGGTTAGGGAGAG+AGG + chr6_3:79988315-79988334 None:intergenic 55.0%
GGCACTAGAAGGTCTACCCT+TGG + chr6_3:79988328-79988347 None:intergenic 55.0%
CCCCCACAAATCAGCCTCAT+AGG - chr6_3:79988346-79988365 Msa0960550:intron 55.0%
!! AATTCCCCCAATGGACTGGG+AGG - chr6_3:79989007-79989026 Msa0960550:intron 55.0%
TACTCCTCCCAGTCCATTGG+GGG + chr6_3:79989014-79989033 None:intergenic 55.0%
GCCGAATGTTGCGATGAGGA+AGG + chr6_3:79990321-79990340 None:intergenic 55.0%
CTGCGATTCTGCGACGGTCT+AGG + chr6_3:79984645-79984664 None:intergenic 60.0%
GCAGTCACAGCCATCCACCT+CGG - chr6_3:79984661-79984680 Msa0960550:three_prime_UTR 60.0%
GCAGTCGAGCTTCGGTGGAA+CGG + chr6_3:79984694-79984713 None:intergenic 60.0%
AGTGAGCAGTCGAGCTTCGG+TGG + chr6_3:79984699-79984718 None:intergenic 60.0%
CGGATGGAGTGGAGCAGAGA+TGG + chr6_3:79984728-79984747 None:intergenic 60.0%
TTTACCAGCGGCGGATGGAG+TGG + chr6_3:79984739-79984758 None:intergenic 60.0%
GGGTATTTACCAGCGGCGGA+TGG + chr6_3:79984744-79984763 None:intergenic 60.0%
! CGGCACCGGGTCCAAACATT+TGG + chr6_3:79985706-79985725 None:intergenic 60.0%
! GTTTGGACCCGGTGCCGAAA+AGG - chr6_3:79985709-79985728 Msa0960550:intron 60.0%
GTGGTTGTTGGGTGGGACTG+TGG - chr6_3:79986498-79986517 Msa0960550:intron 60.0%
GCCGGTCGGTGAAGCACATA+AGG + chr6_3:79988210-79988229 None:intergenic 60.0%
CAAGGCGCATCCTATGCTCC+TGG + chr6_3:79989732-79989751 None:intergenic 60.0%
! CAGGAGCATAGGATGCGCCT+TGG - chr6_3:79989730-79989749 Msa0960550:intron 60.0%
GTCGAGCTTCGGTGGAACGG+AGG + chr6_3:79984691-79984710 None:intergenic 65.0%
CGGAGGAGCTCCGAGGTGGA+TGG + chr6_3:79984674-79984693 None:intergenic 70.0%
GGAACGGAGGAGCTCCGAGG+TGG + chr6_3:79984678-79984697 None:intergenic 70.0%
GGTGGAACGGAGGAGCTCCG+AGG + chr6_3:79984681-79984700 None:intergenic 70.0%
TGCTCCACTCCATCCGCCGC+TGG - chr6_3:79984732-79984751 Msa0960550:exon 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 79984508 79990581 79984508 ID=Msa0960550;Name=Msa0960550
chr6_3 mRNA 79984508 79990581 79984508 ID=Msa0960550-mRNA-1;Parent=Msa0960550;Name=Msa0960550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=307|1|1|1|0.90|0.83|12|238|354
chr6_3 exon 79984508 79984804 79984508 ID=Msa0960550-mRNA-1:exon:14417;Parent=Msa0960550-mRNA-1
chr6_3 exon 79985311 79985356 79985311 ID=Msa0960550-mRNA-1:exon:14416;Parent=Msa0960550-mRNA-1
chr6_3 exon 79985599 79985673 79985599 ID=Msa0960550-mRNA-1:exon:14415;Parent=Msa0960550-mRNA-1
chr6_3 exon 79985765 79985834 79985765 ID=Msa0960550-mRNA-1:exon:14414;Parent=Msa0960550-mRNA-1
chr6_3 exon 79986008 79986106 79986008 ID=Msa0960550-mRNA-1:exon:14413;Parent=Msa0960550-mRNA-1
chr6_3 exon 79986221 79986357 79986221 ID=Msa0960550-mRNA-1:exon:14412;Parent=Msa0960550-mRNA-1
chr6_3 exon 79987452 79987633 79987452 ID=Msa0960550-mRNA-1:exon:14411;Parent=Msa0960550-mRNA-1
chr6_3 exon 79987995 79988163 79987995 ID=Msa0960550-mRNA-1:exon:14410;Parent=Msa0960550-mRNA-1
chr6_3 exon 79989031 79989063 79989031 ID=Msa0960550-mRNA-1:exon:14409;Parent=Msa0960550-mRNA-1
chr6_3 exon 79989359 79989469 79989359 ID=Msa0960550-mRNA-1:exon:14408;Parent=Msa0960550-mRNA-1
chr6_3 exon 79989575 79989719 79989575 ID=Msa0960550-mRNA-1:exon:14407;Parent=Msa0960550-mRNA-1
chr6_3 exon 79990336 79990581 79990336 ID=Msa0960550-mRNA-1:exon:14406;Parent=Msa0960550-mRNA-1
chr6_3 five_prime_UTR 79990336 79990581 79990336 ID=Msa0960550-mRNA-1:five_prime_utr;Parent=Msa0960550-mRNA-1
chr6_3 five_prime_UTR 79989659 79989719 79989659 ID=Msa0960550-mRNA-1:five_prime_utr;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79989575 79989658 79989575 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79989359 79989469 79989359 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79989031 79989063 79989031 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79987995 79988163 79987995 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79987452 79987633 79987452 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79986221 79986357 79986221 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79986008 79986106 79986008 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79985765 79985834 79985765 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79985599 79985673 79985599 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79985311 79985356 79985311 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 CDS 79984746 79984804 79984746 ID=Msa0960550-mRNA-1:cds;Parent=Msa0960550-mRNA-1
chr6_3 three_prime_UTR 79984508 79984745 79984508 ID=Msa0960550-mRNA-1:three_prime_utr;Parent=Msa0960550-mRNA-1
Gene Sequence

>Msa0960550

ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTCGACAGTGTTATGGTTCACAACGACATTGCTCAAAATCTCAAGAAATTGGTCACTGAACATGATTGTCCTCATTTGCTGTTCTATGGTCCATCAGGCGCAGGCAAGAAAACACTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCCGGTGCCGAAAAGGTGAAGGTGGAAAATAGGGCTTGGAAAGTGGATGCTGGAAGTAGATCTATAGATTTAGAGCTGACTACATTATCAAGTGCGAACCACATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTTCTTAATGATGTTGACAAACTCTCAAGAGAAGCCCAGCATTCTCTCCGCAGAACAATGGAGAAATACAGCGCTTATTGCAGATTAGTTCTATGTTGCAATAGCTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTTAATGTGCGAATTAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTACAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTGGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACCGACAAGCAAACAATTCCCCCAATGGACTGGGAGGAGTATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTGACCAATTGCATTCCTCCGGAGATCATTTTGAAGAGACTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTGAAGCATGAAATCTGCCATTGGGCAGCATATTATGAGCATAGGATGCGCCTTGGACAGAAAGCAATTTTTCACATCGAAGCATTTGTGGCTAAGTTTATGAGCGTCTACAAGTCCTTCCTCATCGCAACATTCGGCTGA

Protein sequence

>Msa0960550

MLWVDKYRPKTLDSVMVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG*