AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0921760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0921760 MtrunA17_Chr6g0478631 98.870 354 4 0 1 354 1 354 0.0 732
Msa0921760 MtrunA17_Chr6g0460841 96.610 354 12 0 1 354 1 354 0.0 721
Msa0921760 MtrunA17_Chr5g0404521 34.066 273 161 4 2 269 413 671 7.58e-50 177
Msa0921760 MtrunA17_Chr3g0145801 30.319 376 228 8 2 347 421 792 4.80e-46 167
Msa0921760 MtrunA17_Chr3g0124791 25.072 347 217 6 2 341 33 343 1.54e-33 127
Msa0921760 MtrunA17_Chr3g0125031 32.218 239 125 4 3 234 11 219 3.46e-33 125
Msa0921760 MtrunA17_Chr4g0057341 30.556 216 118 4 3 217 17 201 1.14e-24 102
Msa0921760 MtrunA17_Chr5g0404541 43.750 64 36 0 283 346 2 65 9.20e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0921760 AT5G27740.1 83.898 354 57 0 1 354 1 354 0.0 646
Msa0921760 AT1G21690.1 33.333 234 119 4 3 229 11 214 8.77e-33 125
Msa0921760 AT1G21690.3 32.636 239 124 4 3 234 11 219 1.09e-32 125
Msa0921760 AT1G21690.4 32.051 234 115 4 3 229 11 207 4.20e-30 117
Msa0921760 AT1G77470.1 27.347 245 148 3 3 247 41 255 2.28e-29 116
Msa0921760 AT1G21690.2 32.636 239 112 6 3 234 11 207 2.69e-29 115
Msa0921760 AT1G63160.1 27.126 247 146 6 3 248 17 230 7.10e-23 98.2

Find 99 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6_2:-59381545 Msa0921760:CDS
CATAACACTGTCGAGGGTTT+TGG 0.212335 6_2:+59383260 None:intergenic
AGAAATCAAATCGGAATTTA+AGG 0.217343 6_2:-59379724 Msa0921760:CDS
TGTCCTCATTTGCTGTTCTA+TGG 0.252413 6_2:-59383083 Msa0921760:CDS
TGCTCAAAATCTCAAGAAAT+TGG 0.257130 6_2:-59383223 Msa0921760:intron
ATGGAAGATTTCTGATGTTT+TGG 0.259387 6_2:-59378055 Msa0921760:three_prime_UTR
TTCAGGTGAAGGTGGAAAAT+AGG 0.275227 6_2:-59382714 Msa0921760:intron
CGGCACCGGGTCCAAACATT+TGG 0.299333 6_2:+59383015 None:intergenic
TCTCTCATCTTCTCAACTTA+AGG 0.307732 6_2:-59378110 Msa0921760:three_prime_UTR
TTTCTTCCCTTTAGTATCAA+TGG 0.323241 6_2:+59381474 None:intergenic
AAAGGGAAGAAAGGATTTAA+AGG 0.324156 6_2:-59381463 Msa0921760:intron
GCTCTTCTCCGCCAAATGTT+TGG 0.325475 6_2:-59383026 Msa0921760:CDS
GCTGCAACTTCCTTCTAGTT+TGG 0.326964 6_2:-59379762 Msa0921760:CDS
TTCTTCCCTTTAGTATCAAT+GGG 0.348124 6_2:+59381475 None:intergenic
TCAGGTGAAGGTGGAAAATA+GGG 0.353576 6_2:-59382713 Msa0921760:intron
TTATGAGCTATTGAGGAAAC+TGG 0.357086 6_2:-59379107 Msa0921760:CDS
CTATACATTGGCAGCATTTG+TGG 0.358356 6_2:-59378260 Msa0921760:intron
GCAAGTCTCAAATGACAATA+TGG 0.375769 6_2:+59379697 None:intergenic
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6_2:+59381544 None:intergenic
CTATTTACCTGTTCTTCACT+TGG 0.411342 6_2:+59380913 None:intergenic
TATACTCCTCCCAGTCCATT+GGG 0.413295 6_2:+59379519 None:intergenic
GAGAGTGAGCAGACGAGCTT+CGG 0.415297 6_2:+59384152 None:intergenic
TGAAGGAACAGAGCCCAAAA+AGG 0.416911 6_2:-59379472 Msa0921760:intron
GACTTCTTTATGAGCTATTG+AGG 0.419698 6_2:-59379114 Msa0921760:CDS
AATACAATAAAATTGTATCC+TGG 0.422379 6_2:+59378164 None:intergenic
CACTCTCTCCTATCGGCCTC+TGG 0.431277 6_2:-59384136 Msa0921760:intron
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6_2:-59381509 Msa0921760:CDS
TGTTCTGCGGAGAGAATGTT+GGG 0.433518 6_2:+59381041 None:intergenic
TCCTTCCTCATCGCAACATT+CGG 0.436381 6_2:-59378214 Msa0921760:CDS
CAAAACCCTCGACAGTGTTA+TGG 0.439317 6_2:-59383259 Msa0921760:CDS
TAATGCACCAAGTGAAGAAC+AGG 0.440498 6_2:-59380920 Msa0921760:intron
GTTTGGACCCGGTGCCGAAA+AGG 0.441219 6_2:-59383009 Msa0921760:intron
CAGTTCATTGGTAAGAAAGA+AGG 0.442426 6_2:-59379785 Msa0921760:CDS
TTGCTGTTCTATGGTCCATC+AGG 0.446874 6_2:-59383074 Msa0921760:CDS
CAATGGTGCTTTGCTTTCCC+AGG 0.449651 6_2:-59378182 Msa0921760:three_prime_UTR
GGAAAATAGGGCTTGGAAAG+TGG 0.454758 6_2:-59382701 Msa0921760:CDS
TGCGAGTCTGCGACGGTCTA+GGG 0.457157 6_2:+59384210 None:intergenic
ATGCGAGCAGCCAAACTAGA+AGG 0.460248 6_2:+59379752 None:intergenic
AATTCGCACATTAAGACAAC+GGG 0.461988 6_2:+59380942 None:intergenic
TTTAGGTTGTTTCAAGTTCG+AGG 0.467965 6_2:-59379282 Msa0921760:intron
AATAGACCCATTGATACTAA+AGG 0.470695 6_2:-59381481 Msa0921760:CDS
ATACAATAAAATTGTATCCT+GGG 0.471662 6_2:+59378165 None:intergenic
ATAGACCCATTGATACTAAA+GGG 0.485089 6_2:-59381480 Msa0921760:CDS
ATTGATACTAAAGGGAAGAA+AGG 0.491720 6_2:-59381472 Msa0921760:CDS
CTCCGCCAAATGTTTGGACC+CGG 0.492853 6_2:-59383020 Msa0921760:CDS
ATATACTCCTCCCAGTCCAT+TGG 0.499233 6_2:+59379518 None:intergenic
ATTGTTTGCTTGTCGGTGAA+AGG 0.508946 6_2:+59379545 None:intergenic
CGGAGGAGCGGCGAGGTGGA+AGG 0.509095 6_2:+59384180 None:intergenic
TAAAGAGAGCAAAGATGTTG+TGG 0.510082 6_2:-59383299 Msa0921760:exon
AAAGAGAGCAAAGATGTTGT+GGG 0.510264 6_2:-59383298 Msa0921760:exon
GCTGACCAATTGCATTCCTC+CGG 0.512269 6_2:-59379244 Msa0921760:CDS
TGAAGGTGGAAAATAGGGCT+TGG 0.512888 6_2:-59382708 Msa0921760:CDS
TTGAAGAAAGAAGCAGAAGA+AGG 0.513503 6_2:-59383322 Msa0921760:intron
AGTGAGCAGACGAGCTTCGG+TGG 0.514164 6_2:+59384155 None:intergenic
GATCTCCGGAGGAATGCAAT+TGG 0.520414 6_2:+59379239 None:intergenic
TTTACCTTCAAAATGATCTC+CGG 0.522303 6_2:+59379225 None:intergenic
AGGCAAGAAAACACTTATCA+TGG 0.522703 6_2:-59383048 Msa0921760:CDS
TGAAGCATGAAATCTGCCAT+TGG 0.524375 6_2:-59379075 Msa0921760:CDS
TTGTTCTGCGGAGAGAATGT+TGG 0.530873 6_2:+59381040 None:intergenic
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6_2:-59379784 Msa0921760:CDS
GAAGCATGAAATCTGCCATT+GGG 0.532158 6_2:-59379074 Msa0921760:CDS
GCACATTAAGACAACGGGAG+CGG 0.533938 6_2:+59380947 None:intergenic
CACCGGGTCCAAACATTTGG+CGG 0.535929 6_2:+59383018 None:intergenic
TATGCATACTACAATCATCA+TGG 0.539465 6_2:-59378074 Msa0921760:three_prime_UTR
CAGGAGCATAGGATGCGCCT+TGG 0.541208 6_2:-59378801 Msa0921760:CDS
CCTCATTTAACCAGGAGCAT+AGG 0.541849 6_2:-59378812 Msa0921760:intron
GATATTTACCAGAGGCCGAT+AGG 0.542700 6_2:+59384128 None:intergenic
GAAATGACTCCAAGCGATGC+AGG 0.543849 6_2:-59381553 Msa0921760:CDS
TTCTATGGTCCATCAGGCGC+AGG 0.544328 6_2:-59383068 Msa0921760:CDS
AATTGCATCTGACATAATGA+AGG 0.551340 6_2:-59379489 Msa0921760:CDS
GTCTGCTCACTCTCTCCTAT+CGG 0.558563 6_2:-59384143 Msa0921760:five_prime_UTR
GCAGACGAGCTTCGGTGGAA+CGG 0.563980 6_2:+59384160 None:intergenic
CGCTTGGAGTCATTTCGATG+TGG 0.565712 6_2:+59381560 None:intergenic
ACATTCTCTCCGCAGAACAA+TGG 0.565832 6_2:-59381037 Msa0921760:CDS
CTGTGACTGCGAGTCTGCGA+CGG 0.568056 6_2:+59384203 None:intergenic
GGACCATAGAACAGCAAATG+AGG 0.571639 6_2:+59383080 None:intergenic
GGAACGGAGGAGCGGCGAGG+TGG 0.577929 6_2:+59384176 None:intergenic
GCATAGCAGAGAAATCAAAT+CGG 0.583422 6_2:-59379733 Msa0921760:CDS
AATCAAATCGGAATTTAAGG+AGG 0.587176 6_2:-59379721 Msa0921760:CDS
CATATGTGGGAATGAGAAGG+TGG 0.593706 6_2:+59377967 None:intergenic
TGTATTTCTCCATTGTTCTG+CGG 0.594797 6_2:+59381028 None:intergenic
GGTGGAACGGAGGAGCGGCG+AGG 0.613815 6_2:+59384173 None:intergenic
GTTGATGTTTCAGGTGAAGG+TGG 0.620590 6_2:-59382722 Msa0921760:intron
GTGAACCATAACACTGTCGA+GGG 0.625900 6_2:+59383254 None:intergenic
ACCTTCAAAATGATCTCCGG+AGG 0.628271 6_2:+59379228 None:intergenic
GACGAGCTTCGGTGGAACGG+AGG 0.629241 6_2:+59384163 None:intergenic
ATCAAATCGGAATTTAAGGA+GGG 0.630327 6_2:-59379720 Msa0921760:CDS
GCCGAATGTTGCGATGAGGA+AGG 0.630554 6_2:+59378213 None:intergenic
TTACATAATATGCTGCCCAA+TGG 0.630713 6_2:+59379059 None:intergenic
GCTTCGGTGGAACGGAGGAG+CGG 0.641953 6_2:+59384168 None:intergenic
TACTCCTCCCAGTCCATTGG+GGG 0.645004 6_2:+59379521 None:intergenic
ATACTCCTCCCAGTCCATTG+GGG 0.647707 6_2:+59379520 None:intergenic
TAATTCGCACATTAAGACAA+CGG 0.648193 6_2:+59380941 None:intergenic
TGTGAACCATAACACTGTCG+AGG 0.649165 6_2:+59383253 None:intergenic
TTCAGCCGAATGTTGCGATG+AGG 0.657182 6_2:+59378209 None:intergenic
ACATTCGGCTGAAGAAACAA+TGG 0.670874 6_2:-59378199 Msa0921760:exon
ATATGTGGGAATGAGAAGGT+GGG 0.682689 6_2:+59377968 None:intergenic
GTGGAGATTACTGTTGGACA+CGG 0.686923 6_2:+59379675 None:intergenic
AACCATATGTGGGAATGAGA+AGG 0.704061 6_2:+59377964 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTACAAAAAAGA+TGG + chr6_2:59378596-59378615 None:intergenic 10.0%
!!! TTTTAAATTTTTATTTGGAT+CGG - chr6_2:59379080-59379099 Msa0921760:CDS 10.0%
!!! TATTTTAAGATAATAAAAGA+AGG - chr6_2:59380813-59380832 Msa0921760:intron 10.0%
!!! ATATTTTATTTTCTATACAT+TGG - chr6_2:59383943-59383962 Msa0921760:intron 10.0%
!!! AATTTTATTGTATTAATGAT+TGG - chr6_2:59384060-59384079 Msa0921760:intron 10.0%
!! AAAAAATTGAAAAGAAAGTT+TGG + chr6_2:59378112-59378131 None:intergenic 15.0%
!!! GATTTAAGATATTAATGAAA+AGG - chr6_2:59378226-59378245 Msa0921760:CDS 15.0%
!! ATGTCTAACATAATAAAAAA+GGG + chr6_2:59379981-59380000 None:intergenic 15.0%
!! AATGTCTAACATAATAAAAA+AGG + chr6_2:59379982-59380001 None:intergenic 15.0%
!! ATAATATGCTATTATACTTT+AGG - chr6_2:59382916-59382935 Msa0921760:intron 15.0%
!! TGAAAAATAAGAAGTAAAAA+TGG + chr6_2:59383355-59383374 None:intergenic 15.0%
!! ATATATTGATATATAAGTCT+TGG - chr6_2:59383894-59383913 Msa0921760:intron 15.0%
!! TATATTGATATATAAGTCTT+GGG - chr6_2:59383895-59383914 Msa0921760:intron 15.0%
!! AACAATAAAATACAAAACAC+TGG + chr6_2:59378797-59378816 None:intergenic 20.0%
!!! TTGATTGATTCAAATACAAA+AGG + chr6_2:59379035-59379054 None:intergenic 20.0%
!!! CATCTAACTAAAATTACTTT+TGG + chr6_2:59379333-59379352 None:intergenic 20.0%
!!! TGTTGCAAAGTTTTATTTAA+TGG - chr6_2:59379581-59379600 Msa0921760:intron 20.0%
!!! TGTTGTTTGTAAGAATAAAT+AGG - chr6_2:59380115-59380134 Msa0921760:intron 20.0%
!! TGTAAGAATAAATAGGAAAA+AGG - chr6_2:59380122-59380141 Msa0921760:intron 20.0%
!! TGGTTTCAGAATAATTATAA+AGG + chr6_2:59380268-59380287 None:intergenic 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG - chr6_2:59380706-59380725 Msa0921760:intron 20.0%
!! GAAAAAAAATTCCAAAACAT+AGG + chr6_2:59381373-59381392 None:intergenic 20.0%
!! TTCAAAACATGAAAACTATA+AGG - chr6_2:59381680-59381699 Msa0921760:intron 20.0%
!!! GTTCTTAAATTTTGATGTTT+TGG + chr6_2:59381730-59381749 None:intergenic 20.0%
!!! CTAGAAAAGCATTTTATAAT+CGG + chr6_2:59382169-59382188 None:intergenic 20.0%
!! GATCATCTTTATTGAATATT+TGG - chr6_2:59382377-59382396 Msa0921760:intron 20.0%
!!! ACTTCTTATTTTTCAAAGTA+AGG - chr6_2:59383360-59383379 Msa0921760:intron 20.0%
!!! GTATTCTTTATAATTTGCAA+TGG + chr6_2:59383531-59383550 None:intergenic 20.0%
!!! CTACTTATTTTCATTTACTT+TGG + chr6_2:59383600-59383619 None:intergenic 20.0%
!! TTTGTAAGTAAATCATAGTA+TGG + chr6_2:59383656-59383675 None:intergenic 20.0%
!! TTTGATAGATTAAACATGTT+AGG - chr6_2:59383690-59383709 Msa0921760:intron 20.0%
!! TTGATAGATTAAACATGTTA+GGG - chr6_2:59383691-59383710 Msa0921760:intron 20.0%
!!! TCTAGAGTAAAAAAAATAGA+GGG + chr6_2:59383838-59383857 None:intergenic 20.0%
!! ATACAATAAAATTGTATCCT+GGG + chr6_2:59384053-59384072 None:intergenic 20.0%
!! AATACAATAAAATTGTATCC+TGG + chr6_2:59384054-59384073 None:intergenic 20.0%
!! CGATTTTCTCAAATTATTAG+CGG + chr6_2:59378438-59378457 None:intergenic 25.0%
! TTCAGTGTAATTATAAGTGT+TGG - chr6_2:59378463-59378482 Msa0921760:intron 25.0%
!!! ATTGATTTTGTCTGATTTCA+TGG - chr6_2:59378627-59378646 Msa0921760:intron 25.0%
!! TTGATTTTGTCTGATTTCAT+GGG - chr6_2:59378628-59378647 Msa0921760:intron 25.0%
!!! TCTGAATTTTGAAAGAATGT+TGG - chr6_2:59379273-59379292 Msa0921760:CDS 25.0%
! TCAACAAAGACAATTTAGAA+TGG + chr6_2:59379478-59379497 None:intergenic 25.0%
!! AAGAAAAGAGAAGTATGAAA+AGG + chr6_2:59379554-59379573 None:intergenic 25.0%
! TCTTAACATTTGTATAGGTT+AGG - chr6_2:59379610-59379629 Msa0921760:intron 25.0%
! ATTAGCGGTCAATAATAATA+TGG + chr6_2:59379674-59379693 None:intergenic 25.0%
! ACTTTGTAAAAACAAATCAG+TGG + chr6_2:59379767-59379786 None:intergenic 25.0%
! TATTATGTTAGACATTTCGA+GGG - chr6_2:59379786-59379805 Msa0921760:CDS 25.0%
! ATTTCATTAAACATTGCTGT+AGG - chr6_2:59379999-59380018 Msa0921760:intron 25.0%
! CGTATTATACTTATGAAATG+TGG - chr6_2:59380357-59380376 Msa0921760:intron 25.0%
! ATACTTATGAAATGTGGAAT+TGG - chr6_2:59380363-59380382 Msa0921760:intron 25.0%
! TACTTATGAAATGTGGAATT+GGG - chr6_2:59380364-59380383 Msa0921760:intron 25.0%
!!! GTTTATTTTTTCTGAGTAGA+AGG + chr6_2:59380434-59380453 None:intergenic 25.0%
! ACATAATATTGGAATTTCCA+AGG + chr6_2:59380499-59380518 None:intergenic 25.0%
! AAATGTAGTGCACATAATAT+TGG + chr6_2:59380510-59380529 None:intergenic 25.0%
! AATAAAAGAAGGAATCTTCA+TGG - chr6_2:59380824-59380843 Msa0921760:intron 25.0%
! CTCAAATCATGAAAACTATA+AGG - chr6_2:59381595-59381614 Msa0921760:CDS 25.0%
! AAAACTATAAGGAAACCATA+CGG - chr6_2:59381606-59381625 Msa0921760:CDS 25.0%
!!! GTTCTTGAATTTTGATGTTT+TGG + chr6_2:59381645-59381664 None:intergenic 25.0%
! AAACATCAAAATTCAAGAAC+TGG - chr6_2:59381645-59381664 Msa0921760:intron 25.0%
! AAAACTATAAGGAAACCATA+CGG - chr6_2:59381606-59381625 Msa0921760:CDS 25.0%
! AAAATGCAGATTAAGAAACT+TGG - chr6_2:59382126-59382145 Msa0921760:intron 25.0%
! AGAAATCAAATCGGAATTTA+AGG - chr6_2:59382491-59382510 Msa0921760:intron 25.0%
!! TATCAAAAGCAAACCTTTTT+GGG + chr6_2:59382759-59382778 None:intergenic 25.0%
! GTAAGTGCATTATCAAATTA+TGG - chr6_2:59383175-59383194 Msa0921760:intron 25.0%
!! CATTAACTAGTCTAATATCA+AGG + chr6_2:59383314-59383333 None:intergenic 25.0%
!! CTTGATATTAGACTAGTTAA+TGG - chr6_2:59383312-59383331 Msa0921760:five_prime_UTR 25.0%
!! GTCTAGAGTAAAAAAAATAG+AGG + chr6_2:59383839-59383858 None:intergenic 25.0%
!! TATAGCAATTGCTTTATTCA+AGG - chr6_2:59383864-59383883 Msa0921760:intron 25.0%
AAAGTTTGGATATTTACCAG+AGG + chr6_2:59378098-59378117 None:intergenic 30.0%
! TGATTTTGTCTGATTTCATG+GGG - chr6_2:59378629-59378648 Msa0921760:intron 30.0%
TAACAAGATTCGTCATGTTT+CGG + chr6_2:59378699-59378718 None:intergenic 30.0%
TGCTCAAAATCTCAAGAAAT+TGG - chr6_2:59378992-59379011 Msa0921760:intron 30.0%
! GTGACAAAAAAAGACCTTTT+CGG + chr6_2:59379223-59379242 None:intergenic 30.0%
ATTGTCTTTGTTGATGTTTC+AGG - chr6_2:59379484-59379503 Msa0921760:CDS 30.0%
AGCACTCTTAACATTTGTAT+AGG - chr6_2:59379605-59379624 Msa0921760:intron 30.0%
GTATTATGTTAGACATTTCG+AGG - chr6_2:59379785-59379804 Msa0921760:CDS 30.0%
ATTATGTTAGACATTTCGAG+GGG - chr6_2:59379787-59379806 Msa0921760:CDS 30.0%
AATATCATTGTCTTGATCCT+TGG - chr6_2:59380479-59380498 Msa0921760:intron 30.0%
! TGAATCATTGGTGTCTTATT+TGG - chr6_2:59380541-59380560 Msa0921760:intron 30.0%
AATAGACCCATTGATACTAA+AGG - chr6_2:59380734-59380753 Msa0921760:intron 30.0%
ATAGACCCATTGATACTAAA+GGG - chr6_2:59380735-59380754 Msa0921760:intron 30.0%
TTCTTCCCTTTAGTATCAAT+GGG + chr6_2:59380743-59380762 None:intergenic 30.0%
TTTCTTCCCTTTAGTATCAA+TGG + chr6_2:59380744-59380763 None:intergenic 30.0%
ATTGATACTAAAGGGAAGAA+AGG - chr6_2:59380743-59380762 Msa0921760:intron 30.0%
AAAGGGAAGAAAGGATTTAA+AGG - chr6_2:59380752-59380771 Msa0921760:intron 30.0%
AGAAAGGATTTAAAGGTAAC+CGG - chr6_2:59380759-59380778 Msa0921760:intron 30.0%
AGTTTAACAACAAAAACAGC+CGG + chr6_2:59380781-59380800 None:intergenic 30.0%
TGACTGTGTATAATGATGTT+TGG - chr6_2:59380922-59380941 Msa0921760:CDS 30.0%
TTTACCTGTGTAATGCTTTA+AGG - chr6_2:59380960-59380979 Msa0921760:CDS 30.0%
TAATTCGCACATTAAGACAA+CGG + chr6_2:59381277-59381296 None:intergenic 30.0%
AACAGATTCCATTATTTCCT+TGG + chr6_2:59381349-59381368 None:intergenic 30.0%
ATAGAACAACATTCATCTAC+TGG + chr6_2:59381505-59381524 None:intergenic 30.0%
TAGATGAATGTTGTTCTATG+AGG - chr6_2:59381506-59381525 Msa0921760:CDS 30.0%
TATAAGTCCATGCTTCATAA+AGG - chr6_2:59381562-59381581 Msa0921760:CDS 30.0%
! AGTTTTCATGATTTGAGCTT+AGG + chr6_2:59381592-59381611 None:intergenic 30.0%
AAACTATAAGGAAACCATAC+GGG - chr6_2:59381607-59381626 Msa0921760:CDS 30.0%
! GTAGAATGTCTTGTTAACTT+GGG + chr6_2:59381811-59381830 None:intergenic 30.0%
! AGTAGAATGTCTTGTTAACT+TGG + chr6_2:59381812-59381831 None:intergenic 30.0%
!! AAGACATTCTACTGACTTAT+TGG - chr6_2:59381819-59381838 Msa0921760:intron 30.0%
CAATATTAAGCATGTTCTCT+GGG + chr6_2:59381848-59381867 None:intergenic 30.0%
TCAATATTAAGCATGTTCTC+TGG + chr6_2:59381849-59381868 None:intergenic 30.0%
AAGGAATCTTACATAGGATT+GGG + chr6_2:59381874-59381893 None:intergenic 30.0%
TAAGGAATCTTACATAGGAT+TGG + chr6_2:59381875-59381894 None:intergenic 30.0%
ATCAACATTCTTAGGAGAAA+TGG + chr6_2:59381936-59381955 None:intergenic 30.0%
CTGTCATAATCAACATTCTT+AGG + chr6_2:59381944-59381963 None:intergenic 30.0%
TGAAATAATTCCGAAATGCA+TGG - chr6_2:59382053-59382072 Msa0921760:intron 30.0%
ATTAAGAAACTTGGAAAGGA+AGG - chr6_2:59382135-59382154 Msa0921760:intron 30.0%
! TGCTTTTCTAGATATACTGA+AGG - chr6_2:59382178-59382197 Msa0921760:intron 30.0%
TGATATTACTTTCTGCGATT+TGG - chr6_2:59382205-59382224 Msa0921760:intron 30.0%
! TTCTAAGGATTATATCTGCT+TGG - chr6_2:59382238-59382257 Msa0921760:intron 30.0%
TTAACATCCAACTTATAGAG+TGG + chr6_2:59382304-59382323 None:intergenic 30.0%
TGAATATTTGGAAATCCATG+TGG - chr6_2:59382389-59382408 Msa0921760:intron 30.0%
! GTTGAAGTTTTACAGTTCAT+TGG - chr6_2:59382418-59382437 Msa0921760:intron 30.0%
AGTTCATTGGTAAGAAAGAA+GGG - chr6_2:59382431-59382450 Msa0921760:intron 30.0%
AATCAAATCGGAATTTAAGG+AGG - chr6_2:59382494-59382513 Msa0921760:intron 30.0%
ATCAAATCGGAATTTAAGGA+GGG - chr6_2:59382495-59382514 Msa0921760:intron 30.0%
ACATGCTTCCAATTTAATCT+GGG - chr6_2:59382561-59382580 Msa0921760:intron 30.0%
TTATGCATCCCAGATTAAAT+TGG + chr6_2:59382572-59382591 None:intergenic 30.0%
! CTTCTCAAAGCTTTTCTTTA+AGG - chr6_2:59382608-59382627 Msa0921760:intron 30.0%
!! AAGCTTTTCTTTAAGGAAGA+AGG - chr6_2:59382615-59382634 Msa0921760:intron 30.0%
AATTGCATCTGACATAATGA+AGG - chr6_2:59382726-59382745 Msa0921760:intron 30.0%
! GTATCAAAAGCAAACCTTTT+TGG + chr6_2:59382760-59382779 None:intergenic 30.0%
AGTTGACAAAACAATCAAGT+AGG + chr6_2:59382852-59382871 None:intergenic 30.0%
TTTACCTTCAAAATGATCTC+CGG + chr6_2:59382993-59383012 None:intergenic 30.0%
TTGGGTAAAACATATACAGA+AGG + chr6_2:59383256-59383275 None:intergenic 30.0%
! TTACCCAATTTGATAGTTCA+CGG - chr6_2:59383268-59383287 Msa0921760:CDS 30.0%
! AAAGCAATTTTTCACATCGA+AGG - chr6_2:59383441-59383460 Msa0921760:intron 30.0%
ATCTGAATGTGTGAAATAGT+TGG - chr6_2:59383471-59383490 Msa0921760:intron 30.0%
TCTGAATGTGTGAAATAGTT+GGG - chr6_2:59383472-59383491 Msa0921760:intron 30.0%
CAAATTAAGGATGCAATTGA+TGG + chr6_2:59383555-59383574 None:intergenic 30.0%
! ATTTACTTTGGAGACAAACT+AGG + chr6_2:59383588-59383607 None:intergenic 30.0%
AGCATAGAAAATGCAAATTC+AGG - chr6_2:59383775-59383794 Msa0921760:intron 30.0%
GCATAGAAAATGCAAATTCA+GGG - chr6_2:59383776-59383795 Msa0921760:intron 30.0%
ATCAGCAAGCAAATATTGTA+TGG + chr6_2:59383922-59383941 None:intergenic 30.0%
TATGCATACTACAATCATCA+TGG - chr6_2:59384141-59384160 Msa0921760:five_prime_UTR 30.0%
! ATGGAAGATTTCTGATGTTT+TGG - chr6_2:59384160-59384179 Msa0921760:five_prime_UTR 30.0%
ACAAACATACACAACACAGA+TGG + chr6_2:59378193-59378212 None:intergenic 35.0%
TCTCAAATTATTAGCGGTGT+CGG + chr6_2:59378432-59378451 None:intergenic 35.0%
! GATTTTGTCTGATTTCATGG+GGG - chr6_2:59378630-59378649 Msa0921760:intron 35.0%
!! TCATGTTTCGGTGCTATATT+AGG + chr6_2:59378687-59378706 None:intergenic 35.0%
!! ATAGATAAAGGAGTGTCAAC+GGG + chr6_2:59378825-59378844 None:intergenic 35.0%
!! CATAGATAAAGGAGTGTCAA+CGG + chr6_2:59378826-59378845 None:intergenic 35.0%
TTGAAGAAAGAAGCAGAAGA+AGG - chr6_2:59378893-59378912 Msa0921760:intron 35.0%
TAAAGAGAGCAAAGATGTTG+TGG - chr6_2:59378916-59378935 Msa0921760:intron 35.0%
AAAGAGAGCAAAGATGTTGT+GGG - chr6_2:59378917-59378936 Msa0921760:intron 35.0%
AGGCAAGAAAACACTTATCA+TGG - chr6_2:59379167-59379186 Msa0921760:intron 35.0%
! TTTGTTGATGTTTCAGGTGA+AGG - chr6_2:59379490-59379509 Msa0921760:CDS 35.0%
CTGAACTGTTTGACAATTAG+CGG + chr6_2:59379689-59379708 None:intergenic 35.0%
!! GTGGTAAGTTGATATCGATA+AGG + chr6_2:59379748-59379767 None:intergenic 35.0%
CATAATAAAAAAGGGCAACC+CGG + chr6_2:59379973-59379992 None:intergenic 35.0%
!! AAACTGACTTTGGTCAGTTT+TGG + chr6_2:59380046-59380065 None:intergenic 35.0%
GGAAAAAGGCAAGTCATAAT+TGG - chr6_2:59380136-59380155 Msa0921760:intron 35.0%
ACAACCACTCAATAACTTCT+AGG + chr6_2:59380165-59380184 None:intergenic 35.0%
AGAAGTTATTGAGTGGTTGT+TGG - chr6_2:59380165-59380184 Msa0921760:intron 35.0%
GAAGTTATTGAGTGGTTGTT+GGG - chr6_2:59380166-59380185 Msa0921760:intron 35.0%
AAGATGTAGAACAAAGACAC+AGG + chr6_2:59380241-59380260 None:intergenic 35.0%
TGCAAGAACACACAATACAA+TGG + chr6_2:59380288-59380307 None:intergenic 35.0%
TGTGTGTTCTTGCAATATTC+TGG - chr6_2:59380294-59380313 Msa0921760:intron 35.0%
GAACTATTTCCAGAACTGTT+TGG - chr6_2:59380321-59380340 Msa0921760:intron 35.0%
AAACTGATACCAAACAGTTC+TGG + chr6_2:59380333-59380352 None:intergenic 35.0%
TTTGCAACTGTTCTGACTAT+AGG - chr6_2:59380389-59380408 Msa0921760:intron 35.0%
!!! AGTAGAAGGCATTCATTTTG+AGG + chr6_2:59380420-59380439 None:intergenic 35.0%
TTCTCTGTGAACTGAATCAT+TGG - chr6_2:59380529-59380548 Msa0921760:intron 35.0%
GTGTATAATGATGTTTGGTC+TGG - chr6_2:59380927-59380946 Msa0921760:CDS 35.0%
TGTATTTCTCCATTGTTCTG+CGG + chr6_2:59381190-59381209 None:intergenic 35.0%
AATTCGCACATTAAGACAAC+GGG + chr6_2:59381276-59381295 None:intergenic 35.0%
CTATTTACCTGTTCTTCACT+TGG + chr6_2:59381305-59381324 None:intergenic 35.0%
TGTAGTGTCCAAGGAAATAA+TGG - chr6_2:59381338-59381357 Msa0921760:intron 35.0%
! GGAATCTGTTTCCTATGTTT+TGG - chr6_2:59381359-59381378 Msa0921760:intron 35.0%
CCTCAATGCTAAAAAACAAG+GGG + chr6_2:59381395-59381414 None:intergenic 35.0%
GCCTCAATGCTAAAAAACAA+GGG + chr6_2:59381396-59381415 None:intergenic 35.0%
TGCCTCAATGCTAAAAAACA+AGG + chr6_2:59381397-59381416 None:intergenic 35.0%
! ATTGAGGCAATTGTTTTCTC+TGG - chr6_2:59381408-59381427 Msa0921760:intron 35.0%
ATGAATGTTGTTCTATGAGG+TGG - chr6_2:59381509-59381528 Msa0921760:CDS 35.0%
AGGAATCTTACATAGGATTG+GGG + chr6_2:59381873-59381892 None:intergenic 35.0%
GCACATAAGGAATCTTACAT+AGG + chr6_2:59381880-59381899 None:intergenic 35.0%
ATTCTTAGGAGAAATGGTCT+TGG + chr6_2:59381930-59381949 None:intergenic 35.0%
CAAACAATAATGCCCAACAT+TGG + chr6_2:59382092-59382111 None:intergenic 35.0%
!!! CTGCATTTTTTAGTATGTCC+TGG + chr6_2:59382115-59382134 None:intergenic 35.0%
GCAGATTAAGAAACTTGGAA+AGG - chr6_2:59382131-59382150 Msa0921760:intron 35.0%
TTTGGTCAAGTTCTCTTCTA+AGG - chr6_2:59382223-59382242 Msa0921760:intron 35.0%
AGCATTTCCACTCTATAAGT+TGG - chr6_2:59382294-59382313 Msa0921760:intron 35.0%
CAGTTCATTGGTAAGAAAGA+AGG - chr6_2:59382430-59382449 Msa0921760:intron 35.0%
GCATAGCAGAGAAATCAAAT+CGG - chr6_2:59382482-59382501 Msa0921760:intron 35.0%
GCAAGTCTCAAATGACAATA+TGG + chr6_2:59382521-59382540 None:intergenic 35.0%
! CAGATTAAATTGGAAGCATG+TGG + chr6_2:59382562-59382581 None:intergenic 35.0%
CACATGCTTCCAATTTAATC+TGG - chr6_2:59382560-59382579 Msa0921760:intron 35.0%
TGACAAAACAATCAAGTAGG+CGG + chr6_2:59382849-59382868 None:intergenic 35.0%
!! TTTAGGTTGTTTCAAGTTCG+AGG - chr6_2:59382933-59382952 Msa0921760:intron 35.0%
GACTTCTTTATGAGCTATTG+AGG - chr6_2:59383101-59383120 Msa0921760:CDS 35.0%
TTATGAGCTATTGAGGAAAC+TGG - chr6_2:59383108-59383127 Msa0921760:intron 35.0%
TTACATAATATGCTGCCCAA+TGG + chr6_2:59383159-59383178 None:intergenic 35.0%
GTTCCGTGAACTATCAAATT+GGG + chr6_2:59383274-59383293 None:intergenic 35.0%
TGTTCCGTGAACTATCAAAT+TGG + chr6_2:59383275-59383294 None:intergenic 35.0%
AGTCTAATATCAAGGCAATG+AGG + chr6_2:59383306-59383325 None:intergenic 35.0%
GAAAAATTGCTTTCTGTCCA+AGG + chr6_2:59383434-59383453 None:intergenic 35.0%
CTGAATGTGTGAAATAGTTG+GGG - chr6_2:59383473-59383492 Msa0921760:intron 35.0%
TGAATGTGTGAAATAGTTGG+GGG - chr6_2:59383474-59383493 Msa0921760:intron 35.0%
AGGAGAGAATGTGCAAATTA+AGG + chr6_2:59383568-59383587 None:intergenic 35.0%
TAAACATGTTAGGGACTAAC+TGG - chr6_2:59383700-59383719 Msa0921760:intron 35.0%
TGCAAATTCAGGGACAAAAA+TGG - chr6_2:59383786-59383805 Msa0921760:intron 35.0%
AAATTCAGGGACAAAAATGG+TGG - chr6_2:59383789-59383808 Msa0921760:intron 35.0%
TCTCTCATCTTCTCAACTTA+AGG - chr6_2:59384105-59384124 Msa0921760:intron 35.0%
TGTCTATATCCGTGCTACAT+AGG + chr6_2:59378389-59378408 None:intergenic 40.0%
ATGTAGCACGGATATAGACA+CGG - chr6_2:59378389-59378408 Msa0921760:intron 40.0%
! GTTTGTTACGCTATGAAGCA+CGG + chr6_2:59378525-59378544 None:intergenic 40.0%
ATTTCATGGGGGATAAGGAA+TGG - chr6_2:59378641-59378660 Msa0921760:intron 40.0%
!! TTCGGTGCTATATTAGGCTT+AGG + chr6_2:59378681-59378700 None:intergenic 40.0%
!! TAGATAAAGGAGTGTCAACG+GGG + chr6_2:59378824-59378843 None:intergenic 40.0%
CGTTGACACTCCTTTATCTA+TGG - chr6_2:59378824-59378843 Msa0921760:intron 40.0%
CACTCCTTTATCTATGGTTG+TGG - chr6_2:59378830-59378849 Msa0921760:intron 40.0%
ACAGCCACAACCATAGATAA+AGG + chr6_2:59378837-59378856 None:intergenic 40.0%
! ATAACACTGTCGAGGGTTTT+GGG + chr6_2:59378957-59378976 None:intergenic 40.0%
!! TGTCCTCATTTGCTGTTCTA+TGG - chr6_2:59379132-59379151 Msa0921760:intron 40.0%
! AAAAAAGACCTTTTCGGCAC+CGG + chr6_2:59379217-59379236 None:intergenic 40.0%
!!! TTACTTTTGGTGCTCACACA+AGG + chr6_2:59379320-59379339 None:intergenic 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG - chr6_2:59379501-59379520 Msa0921760:CDS 40.0%
TCAGGTGAAGGTGGAAAATA+GGG - chr6_2:59379502-59379521 Msa0921760:CDS 40.0%
AGACATTGCTCGCTAACTAA+GGG + chr6_2:59379650-59379669 None:intergenic 40.0%
CGATAAGGTTTCTCATTCTC+TGG + chr6_2:59379733-59379752 None:intergenic 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr6_2:59379832-59379851 Msa0921760:intron 40.0%
AACAGCCTCTTGTGTAAAAC+AGG - chr6_2:59379875-59379894 Msa0921760:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG - chr6_2:59379876-59379895 Msa0921760:intron 40.0%
! CTTACCCTGTTTTACACAAG+AGG + chr6_2:59379883-59379902 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - chr6_2:59379881-59379900 Msa0921760:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr6_2:59379907-59379926 Msa0921760:intron 40.0%
AAACATTGCTGTAGGATGAG+AGG - chr6_2:59380007-59380026 Msa0921760:intron 40.0%
! CTGACCAAAGTCAGTTTTTG+TGG - chr6_2:59380049-59380068 Msa0921760:intron 40.0%
! ACTGCCACAAAAACTGACTT+TGG + chr6_2:59380056-59380075 None:intergenic 40.0%
GTTGCCTAGAAGTTATTGAG+TGG - chr6_2:59380158-59380177 Msa0921760:intron 40.0%
TTATTGAGTGGTTGTTGGGT+GGG - chr6_2:59380170-59380189 Msa0921760:intron 40.0%
AGAACCAAGCTCTCAAATCT+TGG - chr6_2:59380203-59380222 Msa0921760:intron 40.0%
TAGAACAAAGACACAGGACA+TGG + chr6_2:59380235-59380254 None:intergenic 40.0%
GTGTTCTTGCAATATTCTGG+CGG - chr6_2:59380297-59380316 Msa0921760:intron 40.0%
!! AGTACTTGAGCACTGTTTTC+AGG - chr6_2:59380583-59380602 Msa0921760:intron 40.0%
TCTTCATGGTCAACAAACAG+TGG - chr6_2:59380838-59380857 Msa0921760:intron 40.0%
! AGAGCCTTAAAGCATTACAC+AGG + chr6_2:59380967-59380986 None:intergenic 40.0%
AATAAGAAACCTCTCCACCT+TGG - chr6_2:59381007-59381026 Msa0921760:CDS 40.0%
TAATGCACCAAGTGAAGAAC+AGG - chr6_2:59381295-59381314 Msa0921760:intron 40.0%
! GAAGTTTTCTGTAGTGTCCA+AGG - chr6_2:59381329-59381348 Msa0921760:intron 40.0%
!!! CCCCTTGTTTTTTAGCATTG+AGG - chr6_2:59381392-59381411 Msa0921760:intron 40.0%
! AGGCAATTGTTTTCTCTGGT+AGG - chr6_2:59381412-59381431 Msa0921760:intron 40.0%
! GGCAATTGTTTTCTCTGGTA+GGG - chr6_2:59381413-59381432 Msa0921760:intron 40.0%
AAGTCCATGCTTCATAAAGG+AGG - chr6_2:59381565-59381584 Msa0921760:CDS 40.0%
AGTCCATGCTTCATAAAGGA+GGG - chr6_2:59381566-59381585 Msa0921760:CDS 40.0%
GAATGATCATAGACTACCAG+AGG - chr6_2:59381768-59381787 Msa0921760:intron 40.0%
GGAATCTTACATAGGATTGG+GGG + chr6_2:59381872-59381891 None:intergenic 40.0%
!! ATGGTCTTGGAAGTGCTAAA+AGG + chr6_2:59381917-59381936 None:intergenic 40.0%
CGGAATTATTTCAGCCTATG+AGG + chr6_2:59382046-59382065 None:intergenic 40.0%
! AATAATGCCCAACATTGGCT+TGG + chr6_2:59382087-59382106 None:intergenic 40.0%
AGAAACTTGGAAAGGAAGGT+TGG - chr6_2:59382139-59382158 Msa0921760:intron 40.0%
GAAACTTGGAAAGGAAGGTT+GGG - chr6_2:59382140-59382159 Msa0921760:intron 40.0%
AACTTCAACAATCTGCCACA+TGG + chr6_2:59382407-59382426 None:intergenic 40.0%
AAGCATGTGGAGATTACTGT+TGG + chr6_2:59382549-59382568 None:intergenic 40.0%
!! ACAGCTCATGTGTTACTTGT+AGG - chr6_2:59382644-59382663 Msa0921760:intron 40.0%
ATTGTTTGCTTGTCGGTGAA+AGG + chr6_2:59382673-59382692 None:intergenic 40.0%
GGCGGTTATAAAAACTGACA+AGG + chr6_2:59382831-59382850 None:intergenic 40.0%
TGAAGCATGAAATCTGCCAT+TGG - chr6_2:59383140-59383159 Msa0921760:intron 40.0%
GAAGCATGAAATCTGCCATT+GGG - chr6_2:59383141-59383160 Msa0921760:intron 40.0%
AGTATCTTCTGCATGAACTC+AGG - chr6_2:59383230-59383249 Msa0921760:CDS 40.0%
TTCTTTCCCCTCATTTAACC+AGG - chr6_2:59383395-59383414 Msa0921760:intron 40.0%
TATGCTCCTGGTTAAATGAG+GGG + chr6_2:59383404-59383423 None:intergenic 40.0%
CTATGCTCCTGGTTAAATGA+GGG + chr6_2:59383405-59383424 None:intergenic 40.0%
CTATACATTGGCAGCATTTG+TGG - chr6_2:59383955-59383974 Msa0921760:intron 40.0%
ACATTCGGCTGAAGAAACAA+TGG - chr6_2:59384016-59384035 Msa0921760:intron 40.0%
GATATTTACCAGAGGCCGAT+AGG + chr6_2:59378090-59378109 None:intergenic 45.0%
GAGCTGTAACCTATGTAGCA+CGG - chr6_2:59378377-59378396 Msa0921760:intron 45.0%
GTCTGATTTCATGGGGGATA+AGG - chr6_2:59378636-59378655 Msa0921760:intron 45.0%
ACAAAACACTGGCACAGACA+CGG + chr6_2:59378786-59378805 None:intergenic 45.0%
TCTATGGTTGTGGCTGTTGT+TGG - chr6_2:59378840-59378859 Msa0921760:intron 45.0%
! CATAACACTGTCGAGGGTTT+TGG + chr6_2:59378958-59378977 None:intergenic 45.0%
CAAAACCCTCGACAGTGTTA+TGG - chr6_2:59378956-59378975 Msa0921760:intron 45.0%
GTGAACCATAACACTGTCGA+GGG + chr6_2:59378964-59378983 None:intergenic 45.0%
TGTGAACCATAACACTGTCG+AGG + chr6_2:59378965-59378984 None:intergenic 45.0%
GGACCATAGAACAGCAAATG+AGG + chr6_2:59379138-59379157 None:intergenic 45.0%
! TTGCTGTTCTATGGTCCATC+AGG - chr6_2:59379141-59379160 Msa0921760:intron 45.0%
! AAAAAGACCTTTTCGGCACC+GGG + chr6_2:59379216-59379235 None:intergenic 45.0%
! GTTGATGTTTCAGGTGAAGG+TGG - chr6_2:59379493-59379512 Msa0921760:CDS 45.0%
TGAAGGTGGAAAATAGGGCT+TGG - chr6_2:59379507-59379526 Msa0921760:CDS 45.0%
GGAAAATAGGGCTTGGAAAG+TGG - chr6_2:59379514-59379533 Msa0921760:CDS 45.0%
CAGACATTGCTCGCTAACTA+AGG + chr6_2:59379651-59379670 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr6_2:59379838-59379857 Msa0921760:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr6_2:59379839-59379858 Msa0921760:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr6_2:59379872-59379891 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr6_2:59379903-59379922 Msa0921760:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr6_2:59379906-59379925 Msa0921760:intron 45.0%
ATTGCTGTAGGATGAGAGGT+AGG - chr6_2:59380011-59380030 Msa0921760:intron 45.0%
GTTATTGAGTGGTTGTTGGG+TGG - chr6_2:59380169-59380188 Msa0921760:intron 45.0%
CCTACCAAGATTTGAGAGCT+TGG + chr6_2:59380210-59380229 None:intergenic 45.0%
CCAAGCTCTCAAATCTTGGT+AGG - chr6_2:59380207-59380226 Msa0921760:intron 45.0%
AGTAATACTGCAAGCCAAGG+TGG + chr6_2:59381024-59381043 None:intergenic 45.0%
TGCAGTAATACTGCAAGCCA+AGG + chr6_2:59381027-59381046 None:intergenic 45.0%
TGTTCTGCGGAGAGAATGTT+GGG + chr6_2:59381177-59381196 None:intergenic 45.0%
TTGTTCTGCGGAGAGAATGT+TGG + chr6_2:59381178-59381197 None:intergenic 45.0%
ACATTCTCTCCGCAGAACAA+TGG - chr6_2:59381178-59381197 Msa0921760:intron 45.0%
AGCGAAACAAACTACTCCTC+TGG + chr6_2:59381787-59381806 None:intergenic 45.0%
!! TTGGAAGTGCTAAAAGGTGC+CGG + chr6_2:59381911-59381930 None:intergenic 45.0%
!! AGCCTATGAGGCTGATTTGT+GGG + chr6_2:59382034-59382053 None:intergenic 45.0%
! GGTGGATTCTCCATGCATTT+CGG + chr6_2:59382066-59382085 None:intergenic 45.0%
AGAATCCACCAAGCCAATGT+TGG - chr6_2:59382076-59382095 Msa0921760:intron 45.0%
GAATCCACCAAGCCAATGTT+GGG - chr6_2:59382077-59382096 Msa0921760:intron 45.0%
GTTGGGCATTATTGTTTGCC+AGG - chr6_2:59382094-59382113 Msa0921760:intron 45.0%
! GCTGCAACTTCCTTCTAGTT+TGG - chr6_2:59382453-59382472 Msa0921760:intron 45.0%
GTGGAGATTACTGTTGGACA+CGG + chr6_2:59382543-59382562 None:intergenic 45.0%
TGGGGGAATTGTTTGCTTGT+CGG + chr6_2:59382680-59382699 None:intergenic 45.0%
CAAGCAAACAATTCCCCCAA+TGG - chr6_2:59382681-59382700 Msa0921760:intron 45.0%
AAACAATTCCCCCAATGGAC+TGG - chr6_2:59382686-59382705 Msa0921760:intron 45.0%
! AACAATTCCCCCAATGGACT+GGG - chr6_2:59382687-59382706 Msa0921760:intron 45.0%
TATACTCCTCCCAGTCCATT+GGG + chr6_2:59382699-59382718 None:intergenic 45.0%
ATATACTCCTCCCAGTCCAT+TGG + chr6_2:59382700-59382719 None:intergenic 45.0%
TGAAGGAACAGAGCCCAAAA+AGG - chr6_2:59382743-59382762 Msa0921760:intron 45.0%
! TCCTCCGGAGATCATTTTGA+AGG - chr6_2:59382986-59383005 Msa0921760:intron 45.0%
ACCTTCAAAATGATCTCCGG+AGG + chr6_2:59382990-59383009 None:intergenic 45.0%
CCTATGCTCCTGGTTAAATG+AGG + chr6_2:59383406-59383425 None:intergenic 45.0%
! CCTCATTTAACCAGGAGCAT+AGG - chr6_2:59383403-59383422 Msa0921760:intron 45.0%
TCCTTCCTCATCGCAACATT+CGG - chr6_2:59384001-59384020 Msa0921760:intron 45.0%
!!! AAAAGTTTTAAATTTTTATT+TGG - chr6_2:59379075-59379094 Msa0921760:CDS 5.0%
GTCTGCTCACTCTCTCCTAT+CGG - chr6_2:59378072-59378091 Msa0921760:three_prime_UTR 50.0%
CACGGATATAGACACGGACA+CGG - chr6_2:59378395-59378414 Msa0921760:intron 50.0%
!! AAGTGTTGGTATCCGACACC+TGG - chr6_2:59378477-59378496 Msa0921760:intron 50.0%
GATTAGACGTGTCCAGGTGT+CGG + chr6_2:59378492-59378511 None:intergenic 50.0%
ACCTGGACACGTCTAATCCA+AGG - chr6_2:59378494-59378513 Msa0921760:intron 50.0%
! TCCTTGGATTAGACGTGTCC+AGG + chr6_2:59378498-59378517 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+TGG + chr6_2:59378514-59378533 None:intergenic 50.0%
!! TAAAGGAGTGTCAACGGGGA+GGG + chr6_2:59378820-59378839 None:intergenic 50.0%
!! ATAAAGGAGTGTCAACGGGG+AGG + chr6_2:59378821-59378840 None:intergenic 50.0%
! TGGATCGGATGTGTTGTTGC+AGG - chr6_2:59379095-59379114 Msa0921760:CDS 50.0%
GCTCTTCTCCGCCAAATGTT+TGG - chr6_2:59379189-59379208 Msa0921760:intron 50.0%
GACATTTCGAGGGGTAACCT+TGG - chr6_2:59379796-59379815 Msa0921760:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr6_2:59379816-59379835 None:intergenic 50.0%
CTATAGCTCCCGCATATGCA+GGG + chr6_2:59379946-59379965 None:intergenic 50.0%
ACTATAGCTCCCGCATATGC+AGG + chr6_2:59379947-59379966 None:intergenic 50.0%
GGATGAGAGGTAGGCATAGA+AGG - chr6_2:59380020-59380039 Msa0921760:intron 50.0%
!! CTTGAGCACTGTTTTCAGGC+TGG - chr6_2:59380587-59380606 Msa0921760:intron 50.0%
CGCTTGGAGTCATTTCGATG+TGG + chr6_2:59380658-59380677 None:intergenic 50.0%
GAAATGACTCCAAGCGATGC+AGG - chr6_2:59380662-59380681 Msa0921760:intron 50.0%
GCACATTAAGACAACGGGAG+CGG + chr6_2:59381271-59381290 None:intergenic 50.0%
AGGCCCTCCTTTATGAAGCA+TGG + chr6_2:59381572-59381591 None:intergenic 50.0%
GGCAATAGCTGCTAACCGTA+TGG + chr6_2:59381624-59381643 None:intergenic 50.0%
GGCAATAGCTACTACCCGTA+TGG + chr6_2:59381709-59381728 None:intergenic 50.0%
TCCTTATGTGCTTCACCGAC+CGG - chr6_2:59381889-59381908 Msa0921760:intron 50.0%
!! AAGTGCTAAAAGGTGCCGGT+CGG + chr6_2:59381907-59381926 None:intergenic 50.0%
ATATCCTCTCTCCCTGACCA+AGG - chr6_2:59381991-59382010 Msa0921760:intron 50.0%
TATCCTCTCTCCCTGACCAA+GGG - chr6_2:59381992-59382011 Msa0921760:intron 50.0%
AGAAGGTCTACCCTTGGTCA+GGG + chr6_2:59382005-59382024 None:intergenic 50.0%
TAGAAGGTCTACCCTTGGTC+AGG + chr6_2:59382006-59382025 None:intergenic 50.0%
!! TGATTTGTGGGGGCACTAGA+AGG + chr6_2:59382022-59382041 None:intergenic 50.0%
!! CCTATGAGGCTGATTTGTGG+GGG + chr6_2:59382032-59382051 None:intergenic 50.0%
!! GCCTATGAGGCTGATTTGTG+GGG + chr6_2:59382033-59382052 None:intergenic 50.0%
!! CAGCCTATGAGGCTGATTTG+TGG + chr6_2:59382035-59382054 None:intergenic 50.0%
!! AATGCCCAACATTGGCTTGG+TGG + chr6_2:59382084-59382103 None:intergenic 50.0%
ATGCGAGCAGCCAAACTAGA+AGG + chr6_2:59382466-59382485 None:intergenic 50.0%
ATACTCCTCCCAGTCCATTG+GGG + chr6_2:59382698-59382717 None:intergenic 50.0%
GCTGACCAATTGCATTCCTC+CGG - chr6_2:59382971-59382990 Msa0921760:intron 50.0%
GATCTCCGGAGGAATGCAAT+TGG + chr6_2:59382979-59382998 None:intergenic 50.0%
TTCAGCCGAATGTTGCGATG+AGG + chr6_2:59384009-59384028 None:intergenic 50.0%
CAATGGTGCTTTGCTTTCCC+AGG - chr6_2:59384033-59384052 Msa0921760:intron 50.0%
GAGAGTGAGCAGACGAGCTT+CGG + chr6_2:59378066-59378085 None:intergenic 55.0%
TTCTATGGTCCATCAGGCGC+AGG - chr6_2:59379147-59379166 Msa0921760:intron 55.0%
! GTTTTCTTGCCTGCGCCTGA+TGG + chr6_2:59379159-59379178 None:intergenic 55.0%
CTCCGCCAAATGTTTGGACC+CGG - chr6_2:59379195-59379214 Msa0921760:intron 55.0%
CACCGGGTCCAAACATTTGG+CGG + chr6_2:59379200-59379219 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr6_2:59379851-59379870 Msa0921760:intron 55.0%
ATGCGGGAGCTATAGTGCAC+CGG - chr6_2:59379951-59379970 Msa0921760:intron 55.0%
TGGTTGTTGGGTGGGACTGT+GGG - chr6_2:59380178-59380197 Msa0921760:intron 55.0%
TCCAAGCGATGCAGGCTTTC+AGG - chr6_2:59380670-59380689 Msa0921760:intron 55.0%
TCCTGAAAGCCTGCATCGCT+TGG + chr6_2:59380674-59380693 None:intergenic 55.0%
TACTGCAAGCCAAGGTGGAG+AGG + chr6_2:59381019-59381038 None:intergenic 55.0%
GGTCAGGGAGAGAGGATATC+AGG + chr6_2:59381990-59382009 None:intergenic 55.0%
GGCACTAGAAGGTCTACCCT+TGG + chr6_2:59382011-59382030 None:intergenic 55.0%
CCCCCACAAATCAGCCTCAT+AGG - chr6_2:59382029-59382048 Msa0921760:intron 55.0%
!! AATTCCCCCAATGGACTGGG+AGG - chr6_2:59382690-59382709 Msa0921760:intron 55.0%
TACTCCTCCCAGTCCATTGG+GGG + chr6_2:59382697-59382716 None:intergenic 55.0%
GCCGAATGTTGCGATGAGGA+AGG + chr6_2:59384005-59384024 None:intergenic 55.0%
TGCGAGTCTGCGACGGTCTA+GGG + chr6_2:59378008-59378027 None:intergenic 60.0%
CTGTGACTGCGAGTCTGCGA+CGG + chr6_2:59378015-59378034 None:intergenic 60.0%
GCAGACGAGCTTCGGTGGAA+CGG + chr6_2:59378058-59378077 None:intergenic 60.0%
AGTGAGCAGACGAGCTTCGG+TGG + chr6_2:59378063-59378082 None:intergenic 60.0%
CACTCTCTCCTATCGGCCTC+TGG - chr6_2:59378079-59378098 Msa0921760:three_prime_UTR 60.0%
! CGGCACCGGGTCCAAACATT+TGG + chr6_2:59379203-59379222 None:intergenic 60.0%
! GTTTGGACCCGGTGCCGAAA+AGG - chr6_2:59379206-59379225 Msa0921760:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr6_2:59379805-59379824 Msa0921760:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr6_2:59379919-59379938 Msa0921760:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr6_2:59379934-59379953 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr6_2:59379935-59379954 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr6_2:59379934-59379953 Msa0921760:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr6_2:59379935-59379954 Msa0921760:intron 60.0%
TGCGGGAGCTATAGTGCACC+GGG - chr6_2:59379952-59379971 Msa0921760:intron 60.0%
GTGGTTGTTGGGTGGGACTG+TGG - chr6_2:59380177-59380196 Msa0921760:intron 60.0%
GCCGGTCGGTGAAGCACATA+AGG + chr6_2:59381893-59381912 None:intergenic 60.0%
CTACCCTTGGTCAGGGAGAG+AGG + chr6_2:59381998-59382017 None:intergenic 60.0%
CAAGGCGCATCCTATGCTCC+TGG + chr6_2:59383416-59383435 None:intergenic 60.0%
! CAGGAGCATAGGATGCGCCT+TGG - chr6_2:59383414-59383433 Msa0921760:intron 60.0%
CTGCGAGTCTGCGACGGTCT+AGG + chr6_2:59378009-59378028 None:intergenic 65.0%
GCTTCGGTGGAACGGAGGAG+CGG + chr6_2:59378050-59378069 None:intergenic 65.0%
GACGAGCTTCGGTGGAACGG+AGG + chr6_2:59378055-59378074 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr6_2:59379921-59379940 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr6_2:59379936-59379955 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr6_2:59379940-59379959 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr6_2:59379941-59379960 None:intergenic 65.0%
CGGAGGAGCGGCGAGGTGGA+AGG + chr6_2:59378038-59378057 None:intergenic 75.0%
GGAACGGAGGAGCGGCGAGG+TGG + chr6_2:59378042-59378061 None:intergenic 75.0%
GGTGGAACGGAGGAGCGGCG+AGG + chr6_2:59378045-59378064 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 59377972 59384265 59377972 ID=Msa0921760;Name=Msa0921760
chr6_2 mRNA 59377972 59384265 59377972 ID=Msa0921760-mRNA-1;Parent=Msa0921760;Name=Msa0921760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=160|1|1|1|0.72|0.83|12|238|354
chr6_2 exon 59377972 59378268 59377972 ID=Msa0921760-mRNA-1:exon:9060;Parent=Msa0921760-mRNA-1
chr6_2 exon 59378775 59378820 59378775 ID=Msa0921760-mRNA-1:exon:9059;Parent=Msa0921760-mRNA-1
chr6_2 exon 59379063 59379137 59379063 ID=Msa0921760-mRNA-1:exon:9058;Parent=Msa0921760-mRNA-1
chr6_2 exon 59379230 59379299 59379230 ID=Msa0921760-mRNA-1:exon:9057;Parent=Msa0921760-mRNA-1
chr6_2 exon 59379473 59379571 59379473 ID=Msa0921760-mRNA-1:exon:9056;Parent=Msa0921760-mRNA-1
chr6_2 exon 59379686 59379822 59379686 ID=Msa0921760-mRNA-1:exon:9055;Parent=Msa0921760-mRNA-1
chr6_2 exon 59380921 59381102 59380921 ID=Msa0921760-mRNA-1:exon:9054;Parent=Msa0921760-mRNA-1
chr6_2 exon 59381464 59381632 59381464 ID=Msa0921760-mRNA-1:exon:9053;Parent=Msa0921760-mRNA-1
chr6_2 exon 59382699 59382731 59382699 ID=Msa0921760-mRNA-1:exon:9052;Parent=Msa0921760-mRNA-1
chr6_2 exon 59383010 59383120 59383010 ID=Msa0921760-mRNA-1:exon:9051;Parent=Msa0921760-mRNA-1
chr6_2 exon 59383224 59383338 59383224 ID=Msa0921760-mRNA-1:exon:9050;Parent=Msa0921760-mRNA-1
chr6_2 exon 59384137 59384265 59384137 ID=Msa0921760-mRNA-1:exon:9049;Parent=Msa0921760-mRNA-1
chr6_2 five_prime_UTR 59384137 59384265 59384137 ID=Msa0921760-mRNA-1:five_prime_utr;Parent=Msa0921760-mRNA-1
chr6_2 five_prime_UTR 59383308 59383338 59383308 ID=Msa0921760-mRNA-1:five_prime_utr;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59383224 59383307 59383224 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59383010 59383120 59383010 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59382699 59382731 59382699 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59381464 59381632 59381464 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59380921 59381102 59380921 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59379686 59379822 59379686 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59379473 59379571 59379473 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59379230 59379299 59379230 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59379063 59379137 59379063 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59378775 59378820 59378775 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 CDS 59378210 59378268 59378210 ID=Msa0921760-mRNA-1:cds;Parent=Msa0921760-mRNA-1
chr6_2 three_prime_UTR 59377972 59378209 59377972 ID=Msa0921760-mRNA-1:three_prime_utr;Parent=Msa0921760-mRNA-1
Gene Sequence

>Msa0921760

ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTCGACAGTGTTATGGTTCACAACGACATTGCTCAAAATCTCAAGAAATTGGTCACTGAACATGATTGTCCTCATTTGCTGTTCTATGGTCCATCAGGCGCAGGCAAGAAAACACTTATCATGGCTCTTCTCCGCCAAATGTTTGGACCCGGTGCCGAAAAGGTGAAGGTGGAAAATAGGGCTTGGAAAGTGGATGCTGGAAGTAGATCTATAGATTTAGAGCTGACTACATTATCAAGTGCGAACCACATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTTCTTAATGATGTTGACAAACTCTCAAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGCGCTTATTGCAGATTAGTTCTATGTTGCAATAGCTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTTAATGTGCGAATTAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTACAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTGGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACCGACAAGCAAACAATTCCCCCAATGGACTGGGAGGAGTATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTGACCAATTGCATTCCTCCGGAGATCATTTTGAAGAGACTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTGAAGCATGAAATCTGCCATTGGGCAGCATATTATGAGCATAGGATGCGCCTTGGACAGAAAGCAATTTTTCACATCGAAGCATTTGTGGCTAAGTTTATGAGCGTCTACAAGTCCTTCCTCATCGCAACATTCGGCTGA

Protein sequence

>Msa0921760

MLWVDKYRPKTLDSVMVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG*