AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960870 MtrunA17_Chr6g0479311 88.967 571 19 1 1 571 1 527 0.0 1019
Msa0960870 MtrunA17_Chr8g0340881 34.118 510 308 13 4 488 9 515 5.10e-76 258
Msa0960870 MtrunA17_Chr8g0340931 31.818 484 304 13 3 464 2 481 1.41e-68 238
Msa0960870 MtrunA17_Chr8g0340871 33.264 484 289 14 4 464 14 486 1.09e-67 235
Msa0960870 MtrunA17_Chr8g0341151 31.185 481 308 11 1 464 2 476 1.89e-67 234
Msa0960870 MtrunA17_Chr8g0341231 32.898 459 285 12 26 464 51 506 6.59e-67 227
Msa0960870 MtrunA17_Chr8g0340941 32.091 483 302 13 1 464 1 476 2.36e-66 225
Msa0960870 MtrunA17_Chr8g0347661 30.579 484 315 11 1 464 6 488 1.52e-65 229
Msa0960870 MtrunA17_Chr8g0341061 34.304 481 265 19 26 464 60 531 1.12e-64 225
Msa0960870 MtrunA17_Chr8g0340911 32.505 483 300 12 1 464 6 481 1.74e-64 226
Msa0960870 MtrunA17_Chr8g0341011 32.450 453 288 10 26 464 34 482 4.94e-64 225
Msa0960870 MtrunA17_Chr1g0205741 32.377 488 272 18 29 473 28 500 6.10e-61 209
Msa0960870 MtrunA17_Chr8g0341091 31.727 498 289 17 26 477 56 548 2.84e-60 211
Msa0960870 MtrunA17_Chr6g0487571 30.906 508 316 16 7 490 8 504 3.33e-60 214
Msa0960870 MtrunA17_Chr8g0340891 31.020 490 297 16 1 464 6 480 6.81e-59 211
Msa0960870 MtrunA17_Chr2g0330591 30.105 475 306 13 7 462 10 477 2.87e-58 209
Msa0960870 MtrunA17_Chr8g0341101 31.656 477 281 15 26 461 59 531 1.68e-56 204
Msa0960870 MtrunA17_Chr7g0263591 30.417 480 296 18 26 477 33 502 3.53e-56 203
Msa0960870 MtrunA17_Chr8g0358831 29.400 483 264 15 3 464 22 448 3.48e-53 194
Msa0960870 MtrunA17_Chr8g0341141 29.072 485 297 13 1 464 1 459 6.96e-53 188
Msa0960870 MtrunA17_Chr1g0181731 27.364 497 305 17 26 473 27 516 6.05e-49 182
Msa0960870 MtrunA17_Chr3g0123141 28.261 506 297 20 16 466 15 509 5.79e-45 171
Msa0960870 MtrunA17_Chr8g0341351 31.471 340 221 8 26 354 44 382 6.38e-41 152
Msa0960870 MtrunA17_Chr6g0487561 31.844 358 219 14 4 342 17 368 4.66e-40 150
Msa0960870 MtrunA17_Chr7g0236881 27.110 557 321 19 7 502 10 542 2.89e-37 147
Msa0960870 MtrunA17_Chr8g0341271 31.922 307 179 8 63 354 3 294 6.32e-36 136
Msa0960870 MtrunA17_Chr8g0340961 30.532 357 207 12 1 340 1 333 5.03e-31 123
Msa0960870 MtrunA17_Chr8g0341111 39.877 163 89 4 324 477 245 407 3.25e-29 122
Msa0960870 MtrunA17_Chr8g0341111 33.721 172 92 7 26 183 56 219 5.57e-17 84.7
Msa0960870 MtrunA17_Chr2g0282601 28.738 515 315 26 4 478 6 508 1.11e-27 117
Msa0960870 MtrunA17_Chr4g0044931 37.363 182 103 6 29 200 7 187 2.35e-27 109
Msa0960870 MtrunA17_Chr5g0411631 23.663 486 298 19 1 459 10 449 8.92e-25 109
Msa0960870 MtrunA17_Chr5g0423871 37.931 145 88 2 322 464 14 158 4.25e-23 97.4
Msa0960870 MtrunA17_Chr5g0423881 27.976 336 219 13 27 342 64 396 2.94e-22 99.4
Msa0960870 MtrunA17_Chr4g0044941 29.478 268 181 7 196 460 9 271 3.35e-21 94.0
Msa0960870 MtrunA17_Chr5g0422481 24.478 527 298 22 9 477 17 501 5.41e-18 87.8
Msa0960870 MtrunA17_Chr2g0330611 32.768 177 108 6 7 173 10 185 7.40e-18 83.2
Msa0960870 MtrunA17_Chr8g0341261 33.594 128 67 3 355 464 19 146 2.69e-17 79.7
Msa0960870 MtrunA17_Chr8g0341201 38.462 143 75 5 93 232 24 156 2.03e-16 77.4
Msa0960870 MtrunA17_Chr2g0330621 25.773 194 136 5 234 423 14 203 2.93e-16 77.8
Msa0960870 MtrunA17_Chr1g0165161 35.616 146 80 6 343 478 19 160 2.49e-15 74.7
Msa0960870 MtrunA17_Chr7g0220741 35.870 184 98 9 354 524 36 212 3.19e-14 75.9
Msa0960870 MtrunA17_Chr1g0165281 35.762 151 80 7 339 477 52 197 5.46e-14 75.5
Msa0960870 MtrunA17_Chr1g0165241 35.762 151 80 7 339 477 52 197 5.46e-14 75.5
Msa0960870 MtrunA17_Chr1g0165311 35.762 151 80 7 339 477 52 197 5.46e-14 75.5
Msa0960870 MtrunA17_Chr4g0073471 40.278 144 67 7 346 477 19 155 4.80e-13 72.0
Msa0960870 MtrunA17_Chr5g0413291 41.463 123 59 5 367 483 51 166 2.48e-12 69.7
Msa0960870 MtrunA17_Chr1g0165921 36.111 144 76 7 339 472 10 147 2.78e-12 69.7
Msa0960870 MtrunA17_Chr1g0165971 33.775 151 83 7 339 477 19 164 5.61e-12 68.9
Msa0960870 MtrunA17_Chr1g0165191 33.553 152 83 7 339 478 19 164 5.90e-12 68.9
Msa0960870 MtrunA17_Chr1g0165221 35.099 151 82 8 339 478 20 165 8.30e-12 68.6
Msa0960870 MtrunA17_Chr1g0165211 32.450 151 84 6 339 478 17 160 1.06e-11 68.2
Msa0960870 MtrunA17_Chr1g0165881 35.821 134 71 6 354 477 38 166 1.20e-11 64.7
Msa0960870 MtrunA17_Chr1g0165271 31.333 150 85 6 339 477 21 163 1.22e-11 67.0
Msa0960870 MtrunA17_Chr7g0222841 33.333 153 64 6 343 463 29 175 1.48e-11 64.3
Msa0960870 MtrunA17_Chr2g0334251 33.117 154 89 5 315 458 2 151 1.62e-11 67.0
Msa0960870 MtrunA17_Chr1g0165231 31.333 150 85 6 339 477 21 163 1.91e-11 67.4
Msa0960870 MtrunA17_Chr1g0165301 31.333 150 85 6 339 477 21 163 1.91e-11 67.4
Msa0960870 MtrunA17_Chr5g0396941 38.000 100 56 4 382 477 58 155 2.55e-11 66.6
Msa0960870 MtrunA17_Chr1g0165951 35.099 151 80 7 339 477 15 159 2.83e-11 66.6
Msa0960870 MtrunA17_Chr1g0151041 48.837 86 41 2 396 478 376 461 4.10e-11 66.2
Msa0960870 MtrunA17_Chr7g0217101 43.529 85 45 2 396 477 20 104 4.97e-11 65.5
Msa0960870 MtrunA17_Chr6g0456231 38.053 113 61 4 354 461 34 142 5.61e-11 65.5
Msa0960870 MtrunA17_Chr8g0345471 34.722 144 72 8 329 461 2 134 9.24e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960870 AT5G59680.1 33.120 468 277 18 26 468 29 485 9.49e-66 230
Msa0960870 AT3G46280.1 36.827 353 199 9 9 344 5 350 9.50e-65 219
Msa0960870 AT4G29990.2 31.836 512 317 17 4 494 6 506 1.14e-64 225
Msa0960870 AT4G29990.1 32.225 481 300 15 4 464 6 480 8.84e-64 224
Msa0960870 AT1G51800.1 31.875 480 302 17 4 465 8 480 1.25e-63 224
Msa0960870 AT3G19230.1 34.105 475 270 14 29 465 25 494 4.22e-63 216
Msa0960870 AT5G59670.2 32.766 470 287 14 26 473 28 490 4.63e-62 220
Msa0960870 AT5G59670.1 32.766 470 287 14 26 473 28 490 4.63e-62 220
Msa0960870 AT3G05990.1 31.967 488 281 17 29 473 30 509 5.34e-61 210
Msa0960870 AT1G51790.3 30.375 507 326 14 5 490 9 509 3.33e-60 215
Msa0960870 AT1G51790.1 30.375 507 326 14 5 490 9 509 3.33e-60 215
Msa0960870 AT1G51790.2 30.648 509 324 15 5 490 9 511 3.78e-60 215
Msa0960870 AT2G19210.1 31.238 509 311 18 3 481 8 507 4.57e-60 214
Msa0960870 AT3G46270.1 34.085 355 213 8 4 344 9 356 1.14e-59 206
Msa0960870 AT3G46270.2 34.085 355 213 8 4 344 17 364 1.26e-59 206
Msa0960870 AT1G24485.4 36.599 347 203 9 3 342 10 346 1.27e-59 204
Msa0960870 AT1G24485.1 36.599 347 203 9 3 342 10 346 2.04e-59 205
Msa0960870 AT1G24485.2 36.599 347 203 9 3 342 10 346 4.44e-59 205
Msa0960870 AT1G24485.3 36.599 347 203 9 3 342 10 346 6.07e-58 203
Msa0960870 AT3G46400.1 30.724 511 316 16 1 482 1 502 1.45e-57 207
Msa0960870 AT2G29000.1 30.335 478 303 14 26 481 30 499 1.60e-57 207
Msa0960870 AT1G05700.1 30.705 482 296 15 6 464 14 480 2.64e-57 206
Msa0960870 AT1G05700.2 30.595 487 290 14 6 464 14 480 3.17e-57 206
Msa0960870 AT1G07550.1 29.707 478 301 16 26 476 29 498 4.08e-57 206
Msa0960870 AT2G19190.1 31.753 485 302 15 1 461 3 482 5.89e-57 206
Msa0960870 AT2G19230.2 30.309 485 306 15 4 464 9 485 1.93e-56 204
Msa0960870 AT3G21340.2 31.373 459 291 13 26 465 33 486 5.36e-56 201
Msa0960870 AT2G19230.1 30.309 485 306 15 4 464 9 485 6.41e-56 204
Msa0960870 AT3G46340.1 29.225 503 322 16 3 477 6 502 6.84e-56 202
Msa0960870 AT5G16900.2 29.142 501 312 18 26 493 24 514 1.65e-55 198
Msa0960870 AT5G59650.1 31.513 476 296 16 26 477 29 498 2.62e-55 201
Msa0960870 AT3G46420.1 30.485 515 319 17 1 484 1 507 3.46e-55 200
Msa0960870 AT2G14440.1 28.601 486 320 14 2 465 4 484 4.19e-55 200
Msa0960870 AT3G21340.1 31.373 459 291 13 26 465 33 486 4.43e-55 200
Msa0960870 AT1G51860.1 31.013 474 299 16 1 451 1 469 6.05e-55 200
Msa0960870 AT4G20450.2 30.648 509 288 18 5 463 7 500 1.61e-54 199
Msa0960870 AT4G20450.1 30.815 503 295 18 5 463 7 500 1.86e-54 199
Msa0960870 AT5G16900.1 29.142 501 312 18 26 493 24 514 2.70e-54 198
Msa0960870 AT5G16900.3 29.142 501 312 18 26 493 24 514 2.70e-54 198
Msa0960870 AT2G37050.4 30.691 492 281 17 26 466 28 510 4.01e-53 193
Msa0960870 AT3G46260.1 34.821 336 193 10 27 344 29 356 4.66e-53 187
Msa0960870 AT2G37050.2 30.691 492 281 17 26 466 28 510 4.73e-53 192
Msa0960870 AT3G46330.1 29.437 462 300 13 26 467 31 486 6.32e-53 194
Msa0960870 AT2G14510.1 28.457 499 307 17 1 465 1 483 7.27e-53 194
Msa0960870 AT2G14510.2 28.457 499 307 17 1 465 9 491 1.19e-52 193
Msa0960870 AT1G51880.1 30.801 487 309 16 1 464 1 482 1.28e-52 193
Msa0960870 AT1G51880.2 30.801 487 309 16 1 464 19 500 1.31e-52 193
Msa0960870 AT2G28990.2 30.435 460 297 14 26 467 25 479 1.57e-52 193
Msa0960870 AT2G28990.1 30.435 460 297 14 26 467 25 479 1.57e-52 193
Msa0960870 AT2G28960.2 30.309 485 307 17 2 465 6 480 3.38e-52 192
Msa0960870 AT2G37050.3 30.691 492 281 17 26 466 28 510 3.56e-52 192
Msa0960870 AT2G37050.1 30.691 492 281 17 26 466 28 510 4.25e-52 192
Msa0960870 AT1G51850.2 29.476 458 296 13 26 465 26 474 4.87e-52 191
Msa0960870 AT5G59650.2 30.785 484 297 17 26 477 29 506 9.54e-52 191
Msa0960870 AT1G51805.1 29.565 460 294 16 26 465 26 475 1.14e-51 191
Msa0960870 AT2G04300.2 29.668 482 316 12 4 465 9 487 3.44e-51 189
Msa0960870 AT1G07560.1 28.337 487 317 14 26 486 30 510 3.10e-50 186
Msa0960870 AT1G51880.3 30.303 495 309 17 1 464 19 508 4.37e-50 186
Msa0960870 AT3G46370.2 29.577 426 272 12 79 482 2 421 5.14e-50 185
Msa0960870 AT3G46370.1 29.577 426 272 12 79 482 2 421 5.14e-50 185
Msa0960870 AT1G51870.2 28.298 523 337 17 1 497 1 511 1.07e-49 185
Msa0960870 AT1G67720.1 29.333 525 311 19 1 473 1 517 3.30e-49 184
Msa0960870 AT1G49100.1 28.457 499 321 18 26 495 30 521 3.59e-49 183
Msa0960870 AT1G51890.3 29.918 488 308 18 4 467 3 480 4.33e-48 179
Msa0960870 AT4G29180.3 31.062 499 311 15 7 476 7 501 5.02e-48 180
Msa0960870 AT4G29180.2 31.062 499 311 15 7 476 7 501 5.17e-48 180
Msa0960870 AT1G51890.2 29.918 488 308 18 4 467 3 480 1.19e-47 179
Msa0960870 AT1G51890.1 29.918 488 308 18 4 467 3 480 1.32e-47 179
Msa0960870 AT3G46240.1 34.139 331 181 10 27 350 6 306 2.25e-47 171
Msa0960870 AT1G51820.1 29.375 480 307 17 8 465 5 474 8.32e-47 176
Msa0960870 AT1G51850.1 28.166 458 282 13 26 465 26 454 2.04e-46 175
Msa0960870 AT1G51805.2 28.261 460 276 16 26 465 26 451 1.24e-45 173
Msa0960870 AT4G29450.1 28.571 511 334 13 1 484 1 507 8.15e-45 170
Msa0960870 AT1G51910.1 29.317 498 303 18 1 464 1 483 2.35e-44 169
Msa0960870 AT3G46330.2 28.704 432 282 13 26 437 31 456 7.04e-44 167
Msa0960870 AT4G29180.1 30.723 498 312 15 7 476 7 499 1.04e-43 167
Msa0960870 AT2G04300.1 28.337 487 275 13 4 465 9 446 5.18e-43 165
Msa0960870 AT1G51870.1 27.517 447 292 15 1 422 1 440 3.92e-39 153
Msa0960870 AT5G59660.2 27.934 426 233 14 70 476 41 411 7.80e-37 146
Msa0960870 AT5G48740.1 30.461 499 290 23 4 477 1 467 1.02e-36 146
Msa0960870 AT1G51860.2 30.699 329 212 11 134 451 2 325 1.78e-34 139
Msa0960870 AT2G28960.1 29.855 345 222 12 133 465 12 348 2.07e-33 136
Msa0960870 AT2G28970.2 29.155 343 227 10 135 467 11 347 6.89e-33 134
Msa0960870 AT5G16900.4 29.595 321 194 13 197 493 16 328 3.37e-32 132
Msa0960870 AT1G51810.1 27.528 356 241 11 121 466 2 350 3.33e-31 129
Msa0960870 AT5G59660.3 25.245 511 273 17 1 484 16 444 1.79e-30 127
Msa0960870 AT1G28340.1 30.398 477 274 28 27 461 29 489 2.50e-30 126
Msa0960870 AT5G59660.1 24.853 511 272 18 1 484 16 441 5.38e-29 122
Msa0960870 AT2G28970.1 29.893 281 185 7 196 467 105 382 2.78e-28 120
Msa0960870 AT1G51890.4 29.538 325 205 12 158 467 101 416 2.44e-26 114
Msa0960870 AT1G51830.1 28.094 299 200 9 193 478 7 303 2.73e-26 114
Msa0960870 AT1G51830.2 28.094 299 200 9 193 478 14 310 3.62e-26 114
Msa0960870 AT3G46350.1 29.278 263 166 8 26 274 30 286 3.77e-24 105
Msa0960870 AT1G51820.2 36.842 152 89 5 321 465 61 212 1.02e-20 96.7
Msa0960870 AT1G51890.5 31.217 189 121 6 287 467 21 208 1.93e-18 89.4
Msa0960870 AT1G51840.2 30.769 182 114 4 1 174 8 185 1.49e-17 82.0
Msa0960870 AT1G51840.5 30.769 182 114 4 1 174 8 185 1.49e-17 82.0
Msa0960870 AT1G51840.4 30.769 182 114 4 1 174 8 185 1.49e-17 82.0
Msa0960870 AT1G51840.3 30.769 182 114 4 1 174 8 185 1.49e-17 82.0
Msa0960870 AT1G51840.1 30.769 182 114 4 1 174 8 185 1.49e-17 82.0
Msa0960870 AT5G59616.1 27.778 144 97 4 263 399 10 153 2.10e-16 77.0
Msa0960870 AT1G25570.1 25.818 550 299 25 29 527 32 523 9.58e-15 77.8
Msa0960870 AT5G63710.2 40.441 136 61 8 354 477 16 143 2.85e-14 76.3
Msa0960870 AT5G63710.4 40.441 136 61 8 354 477 16 143 2.85e-14 76.3
Msa0960870 AT5G63710.1 40.441 136 61 8 354 477 51 178 3.83e-14 75.9
Msa0960870 AT5G63710.3 40.441 136 61 8 354 477 52 179 4.60e-14 75.5
Msa0960870 AT3G08680.1 35.374 147 84 4 339 477 9 152 6.94e-14 75.1
Msa0960870 AT3G08680.2 35.374 147 84 4 339 477 9 152 6.94e-14 75.1
Msa0960870 AT5G65700.1 38.621 145 79 5 342 477 13 156 7.79e-13 72.0
Msa0960870 AT5G65700.2 38.621 145 79 5 342 477 13 156 7.79e-13 72.0
Msa0960870 AT1G60800.1 43.564 101 45 4 365 461 50 142 2.24e-12 70.5
Msa0960870 AT3G49670.1 36.242 149 75 6 342 477 15 156 7.65e-11 65.9

Find 96 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGAATCAATTATATT+TGG 0.182304 6_3:-81123852 None:intergenic
AGGAACTATAGGACTTAAAA+AGG 0.204298 6_3:-81121765 None:intergenic
GGTGATGAACCAAATATAAT+TGG 0.221312 6_3:+81123792 Msa0960870:CDS
TTCAATTTGATGGTAACTAT+TGG 0.240710 6_3:+81120767 Msa0960870:CDS
GAAATTATGAAAAGTGCTTT+TGG 0.262374 6_3:+81121707 Msa0960870:CDS
GGTGGTGAACCAATTATATT+TGG 0.274106 6_3:-81123801 None:intergenic
AAATATCTTACAGTGCTTAA+AGG 0.275214 6_3:-81120625 None:intergenic
GGCGATGATGTTTGCTTACT+TGG 0.288978 6_3:-81123747 None:intergenic
ACGACATATACGATCGAATA+TGG 0.288988 6_3:+81121489 Msa0960870:CDS
ATTTCAAGTGATGATATAAA+AGG 0.289413 6_3:-81120898 None:intergenic
GTGTTTGATCTTCAATTTGA+TGG 0.296625 6_3:+81120757 Msa0960870:CDS
GCATCCCCTGAACGAAATTC+TGG 0.299178 6_3:-81123879 None:intergenic
ATTTGCTGACGCTGTAATAT+TGG 0.310760 6_3:-81121819 None:intergenic
GGCAAAAGGCCTAGGAAATT+AGG 0.323590 6_3:-81122919 None:intergenic
AATACATGCAATTTATCAAT+AGG 0.324435 6_3:+81121639 Msa0960870:CDS
TGGCACTATACCTGCATCTT+TGG 0.326101 6_3:+81123176 Msa0960870:CDS
TGAGTAAAAGAAAACTTAAA+AGG 0.330123 6_3:-81120435 None:intergenic
TCAATTTGATGGTAACTATT+GGG 0.333029 6_3:+81120768 Msa0960870:CDS
TGTATCCAATCCCAACTATA+AGG 0.370450 6_3:-81122543 None:intergenic
GCAGGAACTTATCTTACAAT+AGG 0.375627 6_3:+81123148 Msa0960870:intron
TTTATCGGTTAAAGATTTAG+AGG 0.384278 6_3:-81120524 None:intergenic
CAATGCTGTTACACGAGGTT+TGG 0.390206 6_3:-81122580 None:intergenic
TATGCTAGTGAAATTTCCTT+TGG 0.390714 6_3:-81120845 None:intergenic
GTCTACCATATCCTTATAGT+TGG 0.394733 6_3:+81122532 Msa0960870:CDS
CAATCCCAACTATAAGGATA+TGG 0.397012 6_3:-81122537 None:intergenic
ACTTACAATGTCTTGAGATT+AGG 0.399373 6_3:-81122940 None:intergenic
AATATCTTACAGTGCTTAAA+GGG 0.399969 6_3:-81120624 None:intergenic
CTTCCATGAGGAGGAACTAT+AGG 0.405506 6_3:-81121776 None:intergenic
TTGCAATGGAGATATGCTTT+TGG 0.410315 6_3:+81120976 Msa0960870:CDS
TTGGTGGAAATGAAACTATC+AGG 0.427791 6_3:+81120995 Msa0960870:CDS
TTGCAAAACAATACTATTGA+AGG 0.428188 6_3:+81122889 Msa0960870:CDS
CATATCCTTATAGTTGGGAT+TGG 0.431394 6_3:+81122538 Msa0960870:CDS
TTATCTTACAATAGGTTCAA+TGG 0.431533 6_3:+81123156 Msa0960870:CDS
GATGATGATTACATTCAAAA+TGG 0.435099 6_3:+81120568 Msa0960870:CDS
TCTACCATATCCTTATAGTT+GGG 0.435968 6_3:+81122533 Msa0960870:CDS
GCAGTCATGGAACTGAAATC+TGG 0.436453 6_3:-81122738 None:intergenic
ACATCAAATAATTGTCTATC+GGG 0.450615 6_3:+81123693 Msa0960870:CDS
ATCACTTGAAATAAGAAGCT+TGG 0.453928 6_3:+81120909 Msa0960870:CDS
GGGGATGCATCAGTGGGAAA+TGG 0.454241 6_3:+81123894 Msa0960870:CDS
CACATCAAATAATTGTCTAT+CGG 0.456561 6_3:+81123692 Msa0960870:CDS
GGACCTATTCCTAATTTCCT+AGG 0.458516 6_3:+81122910 Msa0960870:CDS
TTCTTATTCACCAAAGATGC+AGG 0.459461 6_3:-81123186 None:intergenic
ATAAACTTCATGAAAATCAT+TGG 0.461616 6_3:-81123975 None:intergenic
AGGCCTAGGAAATTAGGAAT+AGG 0.464644 6_3:-81122913 None:intergenic
ATGTCTTGAGATTAGGCAAA+AGG 0.465531 6_3:-81122933 None:intergenic
TTGCAAAATCAAAGCATGAT+TGG 0.470530 6_3:-81120959 None:intergenic
CATTGTTTCAAGTGCAGTCA+TGG 0.475249 6_3:-81122751 None:intergenic
TCAAAATGACTATACATTGT+AGG 0.475420 6_3:-81120934 None:intergenic
TGAGATTAGGCAAAAGGCCT+AGG 0.483293 6_3:-81122927 None:intergenic
CCTGAACGAAATTCTGGAAA+AGG 0.492638 6_3:-81123873 None:intergenic
ACTTCAAGAGCATTAAGTAT+AGG 0.496085 6_3:-81121884 None:intergenic
CGAATATGGACACCGGCATA+CGG 0.504321 6_3:+81121503 Msa0960870:CDS
AGGTTTGTTACAACTTAAGT+TGG 0.505252 6_3:+81122473 Msa0960870:CDS
GATATAAAAGGAAATTGAGT+AGG 0.506134 6_3:-81120886 None:intergenic
ATTGGAACAAACTAGGTATC+CGG 0.516098 6_3:+81121466 Msa0960870:intron
GTTGGCATTTGAAGTACTTG+TGG 0.516660 6_3:+81122491 Msa0960870:CDS
AGTCCTATAGTTCCTCCTCA+TGG 0.518586 6_3:+81121773 Msa0960870:CDS
TATTCCATCAAAGTTCCAAA+AGG 0.523384 6_3:+81120670 Msa0960870:CDS
CATTTGAAGTACTTGTGGAT+TGG 0.527907 6_3:+81122496 Msa0960870:CDS
CCTAAAATAAGCTGAGGTGG+TGG 0.537757 6_3:-81123771 None:intergenic
ATTCGATCGTATATGTCGTC+CGG 0.539682 6_3:-81121485 None:intergenic
TATCAATAGGCTTCCAGCAG+AGG 0.541708 6_3:+81121652 Msa0960870:CDS
TCAAGAGCATTAAGTATAGG+AGG 0.545897 6_3:-81121881 None:intergenic
AAAATAAGCTGAGGTGGTGG+TGG 0.547921 6_3:-81123768 None:intergenic
ATAAGTGATGCATTCAATGC+AGG 0.548763 6_3:+81121914 Msa0960870:CDS
AATGAAGTGTCAACCTCTGA+AGG 0.553646 6_3:+81123716 Msa0960870:CDS
AAAATAAGTCGAGGTGGTGG+TGG 0.555136 6_3:-81123819 None:intergenic
CTTGGTGACGATGCCTTCAG+AGG 0.560821 6_3:-81123729 None:intergenic
ATCTTTGTGAGTATCAATTG+TGG 0.563921 6_3:+81120499 Msa0960870:CDS
TCGTTCAGGGGATGCATCAG+TGG 0.564300 6_3:+81123887 Msa0960870:CDS
CCTAAAATAAGTCGAGGTGG+TGG 0.568483 6_3:-81123822 None:intergenic
CGTTCAGGGGATGCATCAGT+GGG 0.574697 6_3:+81123888 Msa0960870:CDS
TGATGGTAACTATTGGGCAA+CGG 0.579493 6_3:+81120774 Msa0960870:CDS
CTATAAGGATATGGTAGACA+AGG 0.579508 6_3:-81122528 None:intergenic
CTTGATGAATAGACCTCTTG+AGG 0.588347 6_3:-81120595 None:intergenic
GCAGGAACAGATAGCAGAGA+TGG 0.591946 6_3:+81121932 Msa0960870:CDS
TCAAAATGGTGTGCCTCAAG+AGG 0.598283 6_3:+81120582 Msa0960870:CDS
CTTAGTGGTTATGACTTGCA+AGG 0.599758 6_3:+81122708 Msa0960870:CDS
TCTTTAACACTTCCATGAGG+AGG 0.600242 6_3:-81121785 None:intergenic
TACACGAGGTTTGGCATCAG+AGG 0.601006 6_3:-81122571 None:intergenic
TGATACTCACAAAGATTGTG+AGG 0.602838 6_3:-81120492 None:intergenic
CTCACAAAGATTGTGAGGGA+AGG 0.603274 6_3:-81120487 None:intergenic
GAAGTACTTGTGGATTGGAG+TGG 0.605966 6_3:+81122501 Msa0960870:CDS
GAAAGTAGGATACCGTATGC+CGG 0.609585 6_3:-81121515 None:intergenic
TCACCTAAAATAAGCTGAGG+TGG 0.616632 6_3:-81123774 None:intergenic
GAAGCAATATATGTAACCAA+AGG 0.617161 6_3:+81120829 Msa0960870:CDS
GAACGAAATTCTGGAAAAGG+TGG 0.625423 6_3:-81123870 None:intergenic
TCAAATTGAAGATCAAACAC+TGG 0.635505 6_3:-81120754 None:intergenic
ACTTACAATGCTGTTACACG+AGG 0.647769 6_3:-81122585 None:intergenic
GATACTCACAAAGATTGTGA+GGG 0.654422 6_3:-81120491 None:intergenic
TCATCTCCTAAAATAAGTCG+AGG 0.658340 6_3:-81123828 None:intergenic
AATTGAAGATCAAACACTGG+TGG 0.660940 6_3:-81120751 None:intergenic
TCATCACCTAAAATAAGCTG+AGG 0.673295 6_3:-81123777 None:intergenic
TCTCCTAAAATAAGTCGAGG+TGG 0.684540 6_3:-81123825 None:intergenic
ACTTCTTTAACACTTCCATG+AGG 0.693419 6_3:-81121788 None:intergenic
ATACGATCGAATATGGACAC+CGG 0.703167 6_3:+81121496 Msa0960870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATATAATAAATTAT+CGG - chr6_3:81122830-81122849 None:intergenic 0.0%
!!! TTTTAAAGTTTAACTTTTTT+TGG + chr6_3:81121051-81121070 Msa0960870:intron 10.0%
!! AATATCAAAATTTGATAAAT+CGG - chr6_3:81121234-81121253 None:intergenic 10.0%
!!! ATTATATTTTATCATCTTAT+CGG - chr6_3:81122354-81122373 None:intergenic 10.0%
!! AAAGTTAATTGAATAATAAA+AGG - chr6_3:81122421-81122440 None:intergenic 10.0%
!!! GTTTTTTTTAACAATTTTAA+TGG + chr6_3:81123629-81123648 Msa0960870:intron 10.0%
!! ATCAACATAATAAAAATTTG+TGG - chr6_3:81120806-81120825 None:intergenic 15.0%
!! AAAAATAACATGTAAATAGA+GGG - chr6_3:81121035-81121054 None:intergenic 15.0%
!! TAAAAATAACATGTAAATAG+AGG - chr6_3:81121036-81121055 None:intergenic 15.0%
!!! GTTTTATTTTATCAAATTAG+TGG + chr6_3:81122449-81122468 Msa0960870:intron 15.0%
!! ATATATAGCTACTAATAATT+TGG + chr6_3:81122659-81122678 Msa0960870:intron 15.0%
!! TATGTGACTTAAAAAAATAT+AGG + chr6_3:81122682-81122701 Msa0960870:intron 15.0%
!! TGAAAGTAAAAAAATATCAA+AGG - chr6_3:81123482-81123501 None:intergenic 15.0%
!! TCTATATATCTAATGTTATA+AGG - chr6_3:81123579-81123598 None:intergenic 15.0%
!! GTTTCTAACTTTAATTAATT+TGG + chr6_3:81123659-81123678 Msa0960870:intron 15.0%
!! TGAGTAAAAGAAAACTTAAA+AGG - chr6_3:81120438-81120457 None:intergenic 20.0%
!!! CCATCTTATATTGTTTTTAT+CGG - chr6_3:81120542-81120561 None:intergenic 20.0%
!!! AACAATTTTTCTTTCTAGTT+GGG - chr6_3:81120651-81120670 None:intergenic 20.0%
!!! TAACAATTTTTCTTTCTAGT+TGG - chr6_3:81120652-81120671 None:intergenic 20.0%
!!! ATTTCAAGTGATGATATAAA+AGG - chr6_3:81120901-81120920 None:intergenic 20.0%
!! TTTATTGTATAGAGAGAAAT+CGG + chr6_3:81121138-81121157 Msa0960870:intron 20.0%
!! CTTAAAAAAAGTCTATGTAA+CGG + chr6_3:81121334-81121353 Msa0960870:intron 20.0%
!! AATACATGCAATTTATCAAT+AGG + chr6_3:81121639-81121658 Msa0960870:CDS 20.0%
!! AACAAACAAAAGATAAACTA+AGG + chr6_3:81122029-81122048 Msa0960870:intron 20.0%
!!! TATCTCTGATATCATTTTTA+TGG - chr6_3:81122158-81122177 None:intergenic 20.0%
!!! CTCTATAAAATCGATTTTTA+AGG - chr6_3:81122302-81122321 None:intergenic 20.0%
!!! TATTTTATCAAATTAGTGGA+AGG + chr6_3:81122453-81122472 Msa0960870:intron 20.0%
!! AAAAAATATAGGTATCTTAG+TGG + chr6_3:81122693-81122712 Msa0960870:intron 20.0%
!! ATAAACTTCATGAAAATCAT+TGG - chr6_3:81123978-81123997 None:intergenic 20.0%
!! TTTATCGGTTAAAGATTTAG+AGG - chr6_3:81120527-81120546 None:intergenic 25.0%
! CCGATAAAAACAATATAAGA+TGG + chr6_3:81120539-81120558 Msa0960870:CDS 25.0%
! AAAAACAATATAAGATGGAG+TGG + chr6_3:81120544-81120563 Msa0960870:CDS 25.0%
! GATGATGATTACATTCAAAA+TGG + chr6_3:81120568-81120587 Msa0960870:CDS 25.0%
! AATATCTTACAGTGCTTAAA+GGG - chr6_3:81120627-81120646 None:intergenic 25.0%
! AAATATCTTACAGTGCTTAA+AGG - chr6_3:81120628-81120647 None:intergenic 25.0%
!! TTCAATTTGATGGTAACTAT+TGG + chr6_3:81120767-81120786 Msa0960870:CDS 25.0%
!! TCAATTTGATGGTAACTATT+GGG + chr6_3:81120768-81120787 Msa0960870:CDS 25.0%
! GATATAAAAGGAAATTGAGT+AGG - chr6_3:81120889-81120908 None:intergenic 25.0%
! TCAAAATGACTATACATTGT+AGG - chr6_3:81120937-81120956 None:intergenic 25.0%
! TGTAAATAGAGGGAATAATT+TGG - chr6_3:81121025-81121044 None:intergenic 25.0%
!!! CACATCATTGTTTTAAATTG+CGG + chr6_3:81121255-81121274 Msa0960870:intron 25.0%
!!! GAAATTATGAAAAGTGCTTT+TGG + chr6_3:81121707-81121726 Msa0960870:CDS 25.0%
! TATAAGCGCTTCATTAAATA+AGG - chr6_3:81121979-81121998 None:intergenic 25.0%
! AAAGATAAACTAAGGTCAAA+CGG + chr6_3:81122037-81122056 Msa0960870:intron 25.0%
!! GAGATAATCTAAGATTTGTT+TGG + chr6_3:81122172-81122191 Msa0960870:intron 25.0%
! TCTTATCGGTATTAGAATTT+GGG - chr6_3:81122340-81122359 None:intergenic 25.0%
! ATCTTATCGGTATTAGAATT+TGG - chr6_3:81122341-81122360 None:intergenic 25.0%
! TTGCAAAACAATACTATTGA+AGG + chr6_3:81122889-81122908 Msa0960870:CDS 25.0%
!! ATATTTTTCTTGATTCATGC+AGG + chr6_3:81123130-81123149 Msa0960870:intron 25.0%
! TTATCTTACAATAGGTTCAA+TGG + chr6_3:81123156-81123175 Msa0960870:CDS 25.0%
!! TTTTGCATTGCATTAGAAAA+TGG + chr6_3:81123243-81123262 Msa0960870:intron 25.0%
! CACATCAAATAATTGTCTAT+CGG + chr6_3:81123692-81123711 Msa0960870:CDS 25.0%
! ACATCAAATAATTGTCTATC+GGG + chr6_3:81123693-81123712 Msa0960870:CDS 25.0%
ATCTTTGTGAGTATCAATTG+TGG + chr6_3:81120499-81120518 Msa0960870:CDS 30.0%
TATTCCATCAAAGTTCCAAA+AGG + chr6_3:81120670-81120689 Msa0960870:CDS 30.0%
!!! GCAAGAATTTTTTCACCTTT+TGG - chr6_3:81120688-81120707 None:intergenic 30.0%
AAGGTGAAAAAATTCTTGCT+AGG + chr6_3:81120689-81120708 Msa0960870:CDS 30.0%
AGGTGAAAAAATTCTTGCTA+GGG + chr6_3:81120690-81120709 Msa0960870:CDS 30.0%
TCAAATTGAAGATCAAACAC+TGG - chr6_3:81120757-81120776 None:intergenic 30.0%
GTGTTTGATCTTCAATTTGA+TGG + chr6_3:81120757-81120776 Msa0960870:CDS 30.0%
GAAGCAATATATGTAACCAA+AGG + chr6_3:81120829-81120848 Msa0960870:CDS 30.0%
TATGCTAGTGAAATTTCCTT+TGG - chr6_3:81120848-81120867 None:intergenic 30.0%
ATCACTTGAAATAAGAAGCT+TGG + chr6_3:81120909-81120928 Msa0960870:CDS 30.0%
TTGCAAAATCAAAGCATGAT+TGG - chr6_3:81120962-81120981 None:intergenic 30.0%
!! ATCATGCTTTGATTTTGCAA+TGG + chr6_3:81120962-81120981 Msa0960870:CDS 30.0%
ACTTCAAAAACCCTTTATAG+CGG - chr6_3:81121302-81121321 None:intergenic 30.0%
GGAACTATAGGACTTAAAAA+GGG - chr6_3:81121767-81121786 None:intergenic 30.0%
AGGAACTATAGGACTTAAAA+AGG - chr6_3:81121768-81121787 None:intergenic 30.0%
!! ACTTCAAGAGCATTAAGTAT+AGG - chr6_3:81121887-81121906 None:intergenic 30.0%
AAGCTATCATGAAGAGTTTA+TGG + chr6_3:81122091-81122110 Msa0960870:intron 30.0%
!! AGGTTTGTTACAACTTAAGT+TGG + chr6_3:81122473-81122492 Msa0960870:CDS 30.0%
TCTACCATATCCTTATAGTT+GGG + chr6_3:81122533-81122552 Msa0960870:CDS 30.0%
ACTTACAATGTCTTGAGATT+AGG - chr6_3:81122943-81122962 None:intergenic 30.0%
! TTATAAACGCTTGATGATCA+TGG - chr6_3:81123367-81123386 None:intergenic 30.0%
GGTGATGAACCAAATATAAT+TGG + chr6_3:81123792-81123811 Msa0960870:CDS 30.0%
GGTGGTGAATCAATTATATT+TGG - chr6_3:81123855-81123874 None:intergenic 30.0%
GATACTCACAAAGATTGTGA+GGG - chr6_3:81120494-81120513 None:intergenic 35.0%
TGATACTCACAAAGATTGTG+AGG - chr6_3:81120495-81120514 None:intergenic 35.0%
!!! TTCACCTTTTGGAACTTTGA+TGG - chr6_3:81120677-81120696 None:intergenic 35.0%
AATTGAAGATCAAACACTGG+TGG - chr6_3:81120754-81120773 None:intergenic 35.0%
! TTGCAATGGAGATATGCTTT+TGG + chr6_3:81120976-81120995 Msa0960870:CDS 35.0%
TTGGTGGAAATGAAACTATC+AGG + chr6_3:81120995-81121014 Msa0960870:CDS 35.0%
TTTAAATTGCGGTCCACAAT+TGG + chr6_3:81121266-81121285 Msa0960870:intron 35.0%
TTCAAAAACCCTTTATAGCG+GGG - chr6_3:81121300-81121319 None:intergenic 35.0%
CTTCAAAAACCCTTTATAGC+GGG - chr6_3:81121301-81121320 None:intergenic 35.0%
TGTGGGTGAAAGTGAAATTA+CGG - chr6_3:81121368-81121387 None:intergenic 35.0%
AATTTCACTTTCACCCACAT+CGG + chr6_3:81121369-81121388 Msa0960870:intron 35.0%
CCAACAATAGCGTCAAAAAA+TGG - chr6_3:81121439-81121458 None:intergenic 35.0%
!!! CCATTTTTTGACGCTATTGT+TGG + chr6_3:81121436-81121455 Msa0960870:intron 35.0%
!! TGCATTGATTGGAACAAACT+AGG + chr6_3:81121459-81121478 Msa0960870:intron 35.0%
ATTGGAACAAACTAGGTATC+CGG + chr6_3:81121466-81121485 Msa0960870:intron 35.0%
ACGACATATACGATCGAATA+TGG + chr6_3:81121489-81121508 Msa0960870:CDS 35.0%
!!! TGATTCCTCGCTTTTTACTT+CGG - chr6_3:81121540-81121559 None:intergenic 35.0%
!!! TTTTTTAATGCAGCTTCTGG+TGG - chr6_3:81121593-81121612 None:intergenic 35.0%
!!! GCATTTTTTAATGCAGCTTC+TGG - chr6_3:81121596-81121615 None:intergenic 35.0%
! TAAACATCATTTTCCTCTGC+TGG - chr6_3:81121668-81121687 None:intergenic 35.0%
ACTTCTTTAACACTTCCATG+AGG - chr6_3:81121791-81121810 None:intergenic 35.0%
! ATTTGCTGACGCTGTAATAT+TGG - chr6_3:81121822-81121841 None:intergenic 35.0%
!! TCAAGAGCATTAAGTATAGG+AGG - chr6_3:81121884-81121903 None:intergenic 35.0%
ATAAGTGATGCATTCAATGC+AGG + chr6_3:81121914-81121933 Msa0960870:CDS 35.0%
! CATTTGAAGTACTTGTGGAT+TGG + chr6_3:81122496-81122515 Msa0960870:CDS 35.0%
CTATAAGGATATGGTAGACA+AGG - chr6_3:81122531-81122550 None:intergenic 35.0%
GTCTACCATATCCTTATAGT+TGG + chr6_3:81122532-81122551 Msa0960870:CDS 35.0%
CAATCCCAACTATAAGGATA+TGG - chr6_3:81122540-81122559 None:intergenic 35.0%
CATATCCTTATAGTTGGGAT+TGG + chr6_3:81122538-81122557 Msa0960870:CDS 35.0%
TGTATCCAATCCCAACTATA+AGG - chr6_3:81122546-81122565 None:intergenic 35.0%
ATGTCTTGAGATTAGGCAAA+AGG - chr6_3:81122936-81122955 None:intergenic 35.0%
GCAGGAACTTATCTTACAAT+AGG + chr6_3:81123148-81123167 Msa0960870:intron 35.0%
TTCTTATTCACCAAAGATGC+AGG - chr6_3:81123189-81123208 None:intergenic 35.0%
GCATTGCATTAGAAAATGGA+AGG + chr6_3:81123247-81123266 Msa0960870:intron 35.0%
TTGCATTAGAAAATGGAAGG+AGG + chr6_3:81123250-81123269 Msa0960870:intron 35.0%
TCATCACCTAAAATAAGCTG+AGG - chr6_3:81123780-81123799 None:intergenic 35.0%
GGTGGTGAACCAATTATATT+TGG - chr6_3:81123804-81123823 None:intergenic 35.0%
TCATCTCCTAAAATAAGTCG+AGG - chr6_3:81123831-81123850 None:intergenic 35.0%
! CTTTTCCAGAATTTCGTTCA+GGG + chr6_3:81123874-81123893 Msa0960870:CDS 35.0%
! TTTTCCAGAATTTCGTTCAG+GGG + chr6_3:81123875-81123894 Msa0960870:CDS 35.0%
CTTGATGAATAGACCTCTTG+AGG - chr6_3:81120598-81120617 None:intergenic 40.0%
! GCTAGGGCAAGCTTTTATTA+TGG + chr6_3:81120706-81120725 Msa0960870:CDS 40.0%
TGATGGTAACTATTGGGCAA+CGG + chr6_3:81120774-81120793 Msa0960870:CDS 40.0%
! CAATGGAGATATGCTTTTGG+TGG + chr6_3:81120979-81120998 Msa0960870:CDS 40.0%
! GCTATTGTTGGTGCATTGAT+TGG + chr6_3:81121448-81121467 Msa0960870:intron 40.0%
ATTCGATCGTATATGTCGTC+CGG - chr6_3:81121488-81121507 None:intergenic 40.0%
ATACGATCGAATATGGACAC+CGG + chr6_3:81121496-81121515 Msa0960870:CDS 40.0%
!! CGCTTTTTACTTCGGAAAGT+AGG - chr6_3:81121532-81121551 None:intergenic 40.0%
ACTTTCCGAAGTAAAAAGCG+AGG + chr6_3:81121532-81121551 Msa0960870:CDS 40.0%
TCTTTAACACTTCCATGAGG+AGG - chr6_3:81121788-81121807 None:intergenic 40.0%
ATGGTCCAAATGTCCAATTG+TGG + chr6_3:81122221-81122240 Msa0960870:intron 40.0%
TGGTCCAAATGTCCAATTGT+GGG + chr6_3:81122222-81122241 Msa0960870:intron 40.0%
TATGCCCACAATTGGACATT+TGG - chr6_3:81122229-81122248 None:intergenic 40.0%
ATGTCCAATTGTGGGCATAA+AGG + chr6_3:81122230-81122249 Msa0960870:intron 40.0%
ATCTCCTTTATGCCCACAAT+TGG - chr6_3:81122237-81122256 None:intergenic 40.0%
! GTTGGCATTTGAAGTACTTG+TGG + chr6_3:81122491-81122510 Msa0960870:CDS 40.0%
ACTTACAATGCTGTTACACG+AGG - chr6_3:81122588-81122607 None:intergenic 40.0%
! CTTAGTGGTTATGACTTGCA+AGG + chr6_3:81122708-81122727 Msa0960870:CDS 40.0%
! CATTGTTTCAAGTGCAGTCA+TGG - chr6_3:81122754-81122773 None:intergenic 40.0%
GGACCTATTCCTAATTTCCT+AGG + chr6_3:81122910-81122929 Msa0960870:CDS 40.0%
AGGCCTAGGAAATTAGGAAT+AGG - chr6_3:81122916-81122935 None:intergenic 40.0%
GAAAATGGAAGGAGGAAAGT+TGG + chr6_3:81123258-81123277 Msa0960870:intron 40.0%
TTGGTTGGAGAAAAATCGAG+AGG + chr6_3:81123277-81123296 Msa0960870:intron 40.0%
! AATGAAGTGTCAACCTCTGA+AGG + chr6_3:81123716-81123735 Msa0960870:CDS 40.0%
TCACCTAAAATAAGCTGAGG+TGG - chr6_3:81123777-81123796 None:intergenic 40.0%
TCTCCTAAAATAAGTCGAGG+TGG - chr6_3:81123828-81123847 None:intergenic 40.0%
! GAACGAAATTCTGGAAAAGG+TGG - chr6_3:81123873-81123892 None:intergenic 40.0%
! CCTGAACGAAATTCTGGAAA+AGG - chr6_3:81123876-81123895 None:intergenic 40.0%
! CCTTTTCCAGAATTTCGTTC+AGG + chr6_3:81123873-81123892 Msa0960870:CDS 40.0%
CTCACAAAGATTGTGAGGGA+AGG - chr6_3:81120490-81120509 None:intergenic 45.0%
TCAAAATGGTGTGCCTCAAG+AGG + chr6_3:81120582-81120601 Msa0960870:CDS 45.0%
AAGTTGAGCCCCGCTATAAA+GGG + chr6_3:81121289-81121308 Msa0960870:intron 45.0%
GAAAGTAGGATACCGTATGC+CGG - chr6_3:81121518-81121537 None:intergenic 45.0%
TATCAATAGGCTTCCAGCAG+AGG + chr6_3:81121652-81121671 Msa0960870:CDS 45.0%
AGTCCTATAGTTCCTCCTCA+TGG + chr6_3:81121773-81121792 Msa0960870:CDS 45.0%
CTTCCATGAGGAGGAACTAT+AGG - chr6_3:81121779-81121798 None:intergenic 45.0%
! CTGAGTGGTCTGATAGTGAA+TGG - chr6_3:81122198-81122217 None:intergenic 45.0%
CTATCAGACCACTCAGTTCA+TGG + chr6_3:81122202-81122221 Msa0960870:intron 45.0%
CATTTGGACCATGAACTGAG+TGG - chr6_3:81122213-81122232 None:intergenic 45.0%
AGTGTCTCACATCCAATGAG+TGG + chr6_3:81122263-81122282 Msa0960870:intron 45.0%
GAGAAATCTCCACCACTCAT+TGG - chr6_3:81122278-81122297 None:intergenic 45.0%
!! GAAGTACTTGTGGATTGGAG+TGG + chr6_3:81122501-81122520 Msa0960870:CDS 45.0%
CAATGCTGTTACACGAGGTT+TGG - chr6_3:81122583-81122602 None:intergenic 45.0%
GCAGTCATGGAACTGAAATC+TGG - chr6_3:81122741-81122760 None:intergenic 45.0%
GGCAAAAGGCCTAGGAAATT+AGG - chr6_3:81122922-81122941 None:intergenic 45.0%
TGAGATTAGGCAAAAGGCCT+AGG - chr6_3:81122930-81122949 None:intergenic 45.0%
TGGCACTATACCTGCATCTT+TGG + chr6_3:81123176-81123195 Msa0960870:CDS 45.0%
! ATGGAAGGAGGAAAGTTGGT+TGG + chr6_3:81123262-81123281 Msa0960870:intron 45.0%
GGCGATGATGTTTGCTTACT+TGG - chr6_3:81123750-81123769 None:intergenic 45.0%
! AAAATAAGCTGAGGTGGTGG+TGG - chr6_3:81123771-81123790 None:intergenic 45.0%
CCTAAAATAAGCTGAGGTGG+TGG - chr6_3:81123774-81123793 None:intergenic 45.0%
!! CCACCACCTCAGCTTATTTT+AGG + chr6_3:81123771-81123790 Msa0960870:CDS 45.0%
! AAAATAAGTCGAGGTGGTGG+TGG - chr6_3:81123822-81123841 None:intergenic 45.0%
CCTAAAATAAGTCGAGGTGG+TGG - chr6_3:81123825-81123844 None:intergenic 45.0%
!! CCACCACCTCGACTTATTTT+AGG + chr6_3:81123822-81123841 Msa0960870:CDS 45.0%
GAAGTTGAGCCCCGCTATAA+AGG + chr6_3:81121288-81121307 Msa0960870:intron 50.0%
CTTTGCATCGTAGCCGATGT+GGG - chr6_3:81121385-81121404 None:intergenic 50.0%
TCTTTGCATCGTAGCCGATG+TGG - chr6_3:81121386-81121405 None:intergenic 50.0%
CGAATATGGACACCGGCATA+CGG + chr6_3:81121503-81121522 Msa0960870:CDS 50.0%
GCAGGAACAGATAGCAGAGA+TGG + chr6_3:81121932-81121951 Msa0960870:CDS 50.0%
GTCTCACATCCAATGAGTGG+TGG + chr6_3:81122266-81122285 Msa0960870:intron 50.0%
TACACGAGGTTTGGCATCAG+AGG - chr6_3:81122574-81122593 None:intergenic 50.0%
GCATCCCCTGAACGAAATTC+TGG - chr6_3:81123882-81123901 None:intergenic 50.0%
CGGGGCTCAACTTCCAATTG+TGG - chr6_3:81121282-81121301 None:intergenic 55.0%
!! CTTGGTGACGATGCCTTCAG+AGG - chr6_3:81123732-81123751 None:intergenic 55.0%
TCGTTCAGGGGATGCATCAG+TGG + chr6_3:81123887-81123906 Msa0960870:CDS 55.0%
CGTTCAGGGGATGCATCAGT+GGG + chr6_3:81123888-81123907 Msa0960870:CDS 55.0%
GGGGATGCATCAGTGGGAAA+TGG + chr6_3:81123894-81123913 Msa0960870:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 81120427 81124001 81120427 ID=Msa0960870;Name=Msa0960870
chr6_3 mRNA 81120427 81124001 81120427 ID=Msa0960870-mRNA-1;Parent=Msa0960870;Name=Msa0960870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|7|0|571
chr6_3 exon 81120427 81121016 81120427 ID=Msa0960870-mRNA-1:exon:14554;Parent=Msa0960870-mRNA-1
chr6_3 exon 81121481 81121953 81121481 ID=Msa0960870-mRNA-1:exon:14555;Parent=Msa0960870-mRNA-1
chr6_3 exon 81122469 81122601 81122469 ID=Msa0960870-mRNA-1:exon:14556;Parent=Msa0960870-mRNA-1
chr6_3 exon 81122704 81122772 81122704 ID=Msa0960870-mRNA-1:exon:14557;Parent=Msa0960870-mRNA-1
chr6_3 exon 81122885 81122956 81122885 ID=Msa0960870-mRNA-1:exon:14558;Parent=Msa0960870-mRNA-1
chr6_3 exon 81123152 81123220 81123152 ID=Msa0960870-mRNA-1:exon:14559;Parent=Msa0960870-mRNA-1
chr6_3 exon 81123692 81124001 81123692 ID=Msa0960870-mRNA-1:exon:14560;Parent=Msa0960870-mRNA-1
chr6_3 CDS 81120427 81121016 81120427 ID=Msa0960870-mRNA-1:cds;Parent=Msa0960870-mRNA-1
chr6_3 CDS 81121481 81121953 81121481 ID=Msa0960870-mRNA-1:cds;Parent=Msa0960870-mRNA-1
chr6_3 CDS 81122469 81122601 81122469 ID=Msa0960870-mRNA-1:cds;Parent=Msa0960870-mRNA-1
chr6_3 CDS 81122704 81122772 81122704 ID=Msa0960870-mRNA-1:cds;Parent=Msa0960870-mRNA-1
chr6_3 CDS 81122885 81122956 81122885 ID=Msa0960870-mRNA-1:cds;Parent=Msa0960870-mRNA-1
chr6_3 CDS 81123152 81123220 81123152 ID=Msa0960870-mRNA-1:cds;Parent=Msa0960870-mRNA-1
chr6_3 CDS 81123692 81124001 81123692 ID=Msa0960870-mRNA-1:cds;Parent=Msa0960870-mRNA-1
Gene Sequence

>Msa0960870

ATGAAAAGCCTTTTAAGTTTTCTTTTACTCATAGCAATTTCTTTGCTATCATTCTCAAAACCTTCCCTCACAATCTTTGTGAGTATCAATTGTGGATCCTCTAAATCTTTAACCGATAAAAACAATATAAGATGGAGTGGTGATGATGATTACATTCAAAATGGTGTGCCTCAAGAGGTCTATTCATCAAGTTCTAGCCCTTTAAGCACTGTAAGATATTTCCCAACTAGAAAGAAAAATTGTTATTCCATCAAAGTTCCAAAAGGTGAAAAAATTCTTGCTAGGGCAAGCTTTTATTATGGAAATTATGATAATAAATTATCACCACCAGTGTTTGATCTTCAATTTGATGGTAACTATTGGGCAACGGTTAATACCACAAATTTTTATTATGTTGATTATGAAGCAATATATGTAACCAAAGGAAATTTCACTAGCATATGTGTTGCTCAAACAAAACCTACTCAATTTCCTTTTATATCATCACTTGAAATAAGAAGCTTGGATCCTACAATGTATAGTCATTTTGATACCAATCATGCTTTGATTTTGCAATGGAGATATGCTTTTGGTGGAAATGAAACTATCAGGTATCCGGACGACATATACGATCGAATATGGACACCGGCATACGGTATCCTACTTTCCGAAGTAAAAAGCGAGGAATCAAGCTTCGACATTAGCACAGCAGAAGATCGTCCACCAGAAGCTGCATTAAAAAATGCTATTGTTTCATCAAGCACAAATGAATACATGCAATTTATCAATAGGCTTCCAGCAGAGGAAAATGATGTTTACGTAAATGCTTATTTCTCAGAAATTATGAAAAGTGCTTTTGGAAAAAGATCAATTCAGATGTATATAGATGATAAGCCCTTTTTAAGTCCTATAGTTCCTCCTCATGGAAGTGTTAAAGAAGTGTATATAACCAATATTACAGCGTCAGCAAATACTACATTTGTTCTGCAAGCTTCAGAGTCTTCTACTCTTCCTCCTATACTTAATGCTCTTGAAGTTTTTACAATAAGTGATGCATTCAATGCAGGAACAGATAGCAGAGATGTGGAAGGTTTGTTACAACTTAAGTTGGCATTTGAAGTACTTGTGGATTGGAGTGGAGATCCTTGTCTACCATATCCTTATAGTTGGGATTGGATACAATGTACCTCTGATGCCAAACCTCGTGTAACAGCATTGTATCTTAGTGGTTATGACTTGCAAGGCACTCTTCCAGATTTCAGTTCCATGACTGCACTTGAAACAATTGATTTGCAAAACAATACTATTGAAGGACCTATTCCTAATTTCCTAGGCCTTTTGCCTAATCTCAAGACATTGAACTTATCTTACAATAGGTTCAATGGCACTATACCTGCATCTTTGGTGAATAAGAAAATTGAAATTGACACATCAAATAATTGTCTATCGGGAATGAAGTGTCAACCTCTGAAGGCATCGTCACCAAGTAAGCAAACATCATCGCCACCACCACCTCAGCTTATTTTAGGTGATGAACCAAATATAATTGGTTCACCACCACCACCTCGACTTATTTTAGGAGATGAACCAAATATAATTGATTCACCACCTTTTCCAGAATTTCGTTCAGGGGATGCATCAGTGGGAAATGGAAGCTTGAAGAACAACAAACTAAACATATTATTCATACTAGCTGCACAAACTTTGCTACCAATGATTTTCATGAAGTTTATATGA
Protein sequence

>Msa0960870

MKSLLSFLLLIAISLLSFSKPSLTIFVSINCGSSKSLTDKNNIRWSGDDDYIQNGVPQEVYSSSSSPLSTVRYFPTRKKNCYSIKVPKGEKILARASFYYGNYDNKLSPPVFDLQFDGNYWATVNTTNFYYVDYEAIYVTKGNFTSICVAQTKPTQFPFISSLEIRSLDPTMYSHFDTNHALILQWRYAFGGNETIRYPDDIYDRIWTPAYGILLSEVKSEESSFDISTAEDRPPEAALKNAIVSSSTNEYMQFINRLPAEENDVYVNAYFSEIMKSAFGKRSIQMYIDDKPFLSPIVPPHGSVKEVYITNITASANTTFVLQASESSTLPPILNALEVFTISDAFNAGTDSRDVEGLLQLKLAFEVLVDWSGDPCLPYPYSWDWIQCTSDAKPRVTALYLSGYDLQGTLPDFSSMTALETIDLQNNTIEGPIPNFLGLLPNLKTLNLSYNRFNGTIPASLVNKKIEIDTSNNCLSGMKCQPLKASSPSKQTSSPPPPQLILGDEPNIIGSPPPPRLILGDEPNIIDSPPFPEFRSGDASVGNGSLKNNKLNILFILAAQTLLPMIFMKFI*