Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406840 | XP_013464999.1 | 71.429 | 84 | 24 | 0 | 190 | 273 | 349 | 432 | 7.63e-28 | 124 |
| Msa1406840 | XP_013464999.1 | 75.325 | 154 | 36 | 1 | 26 | 179 | 94 | 245 | 1.48e-68 | 231 |
| Msa1406840 | XP_013464999.1 | 84.906 | 53 | 8 | 0 | 3 | 55 | 1 | 53 | 6.26e-20 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406840 | sp|Q9ZWB4|3AT1_ARATH | 37.705 | 122 | 67 | 3 | 57 | 176 | 116 | 230 | 4.53e-16 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406840 | A0A072VAG9 | 71.429 | 84 | 24 | 0 | 190 | 273 | 349 | 432 | 3.64e-28 | 124 |
| Msa1406840 | A0A072VAG9 | 75.325 | 154 | 36 | 1 | 26 | 179 | 94 | 245 | 7.07e-69 | 231 |
| Msa1406840 | A0A072VAG9 | 84.906 | 53 | 8 | 0 | 3 | 55 | 1 | 53 | 2.99e-20 | 101 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1406840 | 0.806857 | 6.710796e-50 | -8.615850e-47 |
| Msa0013040 | Msa1406840 | 0.831788 | 1.368221e-55 | -8.615850e-47 |
| Msa0014590 | Msa1406840 | 0.812839 | 3.464498e-51 | -8.615850e-47 |
| Msa0027860 | Msa1406840 | 0.823558 | 1.298097e-53 | -8.615850e-47 |
| Msa0040210 | Msa1406840 | 0.803380 | 3.583302e-49 | -8.615850e-47 |
| Msa0043120 | Msa1406840 | 0.806111 | 9.637805e-50 | -8.615850e-47 |
| Msa0062010 | Msa1406840 | 0.824340 | 8.512689e-54 | -8.615850e-47 |
| Msa0063540 | Msa1406840 | 0.802751 | 4.835933e-49 | -8.615850e-47 |
| Msa0075560 | Msa1406840 | 0.819345 | 1.219555e-52 | -8.615850e-47 |
| Msa0087900 | Msa1406840 | 0.804606 | 1.992874e-49 | -8.615850e-47 |
| Msa0095910 | Msa1406840 | 0.804223 | 2.394811e-49 | -8.615850e-47 |
| Msa0108350 | Msa1406840 | 0.841439 | 4.748706e-58 | -8.615850e-47 |
| Msa0120050 | Msa1406840 | 0.805793 | 1.124217e-49 | -8.615850e-47 |
| Msa1355340 | Msa1406840 | 0.817878 | 2.623840e-52 | -8.615850e-47 |
| Msa1357840 | Msa1406840 | 0.800281 | 1.551508e-48 | -8.615850e-47 |
| Msa1357860 | Msa1406840 | 0.803908 | 2.784767e-49 | -8.615850e-47 |
| Msa1406840 | Msa1411550 | 0.807384 | 5.188951e-50 | -8.615850e-47 |
| Msa1406840 | Msa1429550 | 0.813570 | 2.393924e-51 | -8.615850e-47 |
| Msa1406840 | Msa1441450 | 0.802048 | 6.747649e-49 | -8.615850e-47 |
| Msa1406840 | Msa1445900 | 0.830414 | 2.976170e-55 | -8.615850e-47 |
| Msa1406840 | Msa1458270 | 0.801236 | 9.904339e-49 | -8.615850e-47 |
| Msa1406840 | Msa1459610 | 0.835222 | 1.902506e-56 | -8.615850e-47 |
| Msa0604200 | Msa1406840 | 0.812346 | 4.439559e-51 | -8.615850e-47 |
| Msa0606470 | Msa1406840 | 0.820180 | 7.860322e-53 | -8.615850e-47 |
| Msa0609460 | Msa1406840 | 0.817981 | 2.487688e-52 | -8.615850e-47 |
| Msa0616300 | Msa1406840 | 0.814803 | 1.279193e-51 | -8.615850e-47 |
| Msa0631700 | Msa1406840 | 0.813052 | 3.110368e-51 | -8.615850e-47 |
| Msa0633940 | Msa1406840 | 0.824480 | 7.891536e-54 | -8.615850e-47 |
| Msa0633970 | Msa1406840 | 0.819327 | 1.231329e-52 | -8.615850e-47 |
| Msa0643190 | Msa1406840 | 0.800787 | 1.223251e-48 | -8.615850e-47 |
| Msa0643840 | Msa1406840 | 0.833600 | 4.860058e-56 | -8.615850e-47 |
| Msa0650100 | Msa1406840 | 0.803810 | 2.917908e-49 | -8.615850e-47 |
| Msa0655800 | Msa1406840 | 0.810582 | 1.073254e-50 | -8.615850e-47 |
| Msa0661440 | Msa1406840 | 0.810895 | 9.180382e-51 | -8.615850e-47 |
| Msa0670360 | Msa1406840 | 0.801262 | 9.781871e-49 | -8.615850e-47 |
| Msa0671640 | Msa1406840 | 0.818138 | 2.292202e-52 | -8.615850e-47 |
| Msa0692090 | Msa1406840 | 0.807405 | 5.137373e-50 | -8.615850e-47 |
| Msa0708680 | Msa1406840 | 0.811493 | 6.809342e-51 | -8.615850e-47 |
| Msa0711260 | Msa1406840 | 0.815380 | 9.523522e-52 | -8.615850e-47 |
| Msa0715220 | Msa1406840 | 0.827982 | 1.157990e-54 | -8.615850e-47 |
| Msa0727480 | Msa1406840 | 0.800226 | 1.591494e-48 | -8.615850e-47 |
| Msa0735140 | Msa1406840 | 0.820958 | 5.208868e-53 | -8.615850e-47 |
| Msa0739720 | Msa1406840 | 0.810582 | 1.073058e-50 | -8.615850e-47 |
| Msa0768670 | Msa1406840 | 0.837542 | 4.888771e-57 | -8.615850e-47 |
| Msa0768720 | Msa1406840 | 0.826344 | 2.855771e-54 | -8.615850e-47 |
| Msa0777060 | Msa1406840 | 0.830656 | 2.596986e-55 | -8.615850e-47 |
| Msa0777070 | Msa1406840 | 0.822715 | 2.041920e-53 | -8.615850e-47 |
| Msa0802600 | Msa1406840 | 0.806416 | 8.313459e-50 | -8.615850e-47 |
| Msa0806930 | Msa1406840 | 0.831088 | 2.035504e-55 | -8.615850e-47 |
| Msa0814160 | Msa1406840 | 0.868118 | 8.277780e-66 | -8.615850e-47 |
| Msa0822400 | Msa1406840 | 0.837855 | 4.063918e-57 | -8.615850e-47 |
| Msa0822410 | Msa1406840 | 0.827161 | 1.823097e-54 | -8.615850e-47 |
| Msa0831890 | Msa1406840 | 0.828492 | 8.722596e-55 | -8.615850e-47 |
| Msa0123530 | Msa1406840 | 0.815747 | 7.888228e-52 | -8.615850e-47 |
| Msa0125600 | Msa1406840 | 0.809857 | 1.537643e-50 | -8.615850e-47 |
| Msa0134570 | Msa1406840 | 0.827672 | 1.374874e-54 | -8.615850e-47 |
| Msa0150910 | Msa1406840 | 0.812017 | 5.238401e-51 | -8.615850e-47 |
| Msa0150920 | Msa1406840 | 0.842146 | 3.089903e-58 | -8.615850e-47 |
| Msa0163340 | Msa1406840 | 0.815680 | 8.165834e-52 | -8.615850e-47 |
| Msa0168010 | Msa1406840 | 0.822554 | 2.226571e-53 | -8.615850e-47 |
| Msa0190670 | Msa1406840 | 0.818644 | 1.759841e-52 | -8.615850e-47 |
| Msa0190890 | Msa1406840 | 0.816413 | 5.601391e-52 | -8.615850e-47 |
| Msa0196260 | Msa1406840 | 0.811250 | 7.690209e-51 | -8.615850e-47 |
| Msa0209060 | Msa1406840 | 0.832695 | 8.160403e-56 | -8.615850e-47 |
| Msa0212550 | Msa1406840 | 0.817912 | 2.578258e-52 | -8.615850e-47 |
| Msa0220090 | Msa1406840 | 0.861753 | 8.219876e-64 | -8.615850e-47 |
| Msa0233210 | Msa1406840 | 0.810494 | 1.120970e-50 | -8.615850e-47 |
| Msa0238110 | Msa1406840 | 0.802319 | 5.935375e-49 | -8.615850e-47 |
| Msa1231720 | Msa1406840 | 0.813761 | 2.173674e-51 | -8.615850e-47 |
| Msa1235330 | Msa1406840 | 0.806713 | 7.197828e-50 | -8.615850e-47 |
| Msa1238250 | Msa1406840 | 0.803757 | 2.993933e-49 | -8.615850e-47 |
| Msa1253750 | Msa1406840 | 0.811082 | 8.364909e-51 | -8.615850e-47 |
| Msa1256730 | Msa1406840 | 0.806129 | 9.556977e-50 | -8.615850e-47 |
| Msa1262900 | Msa1406840 | 0.804603 | 1.995905e-49 | -8.615850e-47 |
| Msa1267990 | Msa1406840 | 0.801671 | 8.065118e-49 | -8.615850e-47 |
| Msa1279750 | Msa1406840 | 0.802329 | 5.906782e-49 | -8.615850e-47 |
| Msa1297390 | Msa1406840 | 0.837127 | 6.245025e-57 | -8.615850e-47 |
| Msa1319010 | Msa1406840 | 0.821581 | 3.741006e-53 | -8.615850e-47 |
| Msa1319030 | Msa1406840 | 0.807290 | 5.433962e-50 | -8.615850e-47 |
| Msa1319190 | Msa1406840 | 0.813447 | 2.547319e-51 | -8.615850e-47 |
| Msa1323120 | Msa1406840 | 0.811115 | 8.227979e-51 | -8.615850e-47 |
| Msa1342360 | Msa1406840 | -0.802808 | 4.705542e-49 | -8.615850e-47 |
| Msa0366510 | Msa1406840 | 0.825687 | 4.092975e-54 | -8.615850e-47 |
| Msa0374040 | Msa1406840 | 0.819444 | 1.157458e-52 | -8.615850e-47 |
| Msa0390170 | Msa1406840 | 0.808906 | 2.460478e-50 | -8.615850e-47 |
| Msa0409530 | Msa1406840 | 0.812548 | 4.011952e-51 | -8.615850e-47 |
| Msa0414480 | Msa1406840 | 0.820956 | 5.214930e-53 | -8.615850e-47 |
| Msa0424540 | Msa1406840 | 0.801376 | 9.271358e-49 | -8.615850e-47 |
| Msa0427560 | Msa1406840 | 0.801650 | 8.146308e-49 | -8.615850e-47 |
| Msa0456450 | Msa1406840 | -0.802215 | 6.236742e-49 | -8.615850e-47 |
| Msa0464310 | Msa1406840 | 0.820454 | 6.800634e-53 | -8.615850e-47 |
| Msa0987640 | Msa1406840 | 0.827703 | 1.351293e-54 | -8.615850e-47 |
| Msa0990490 | Msa1406840 | 0.803501 | 3.383145e-49 | -8.615850e-47 |
| Msa0993450 | Msa1406840 | 0.803304 | 3.715292e-49 | -8.615850e-47 |
| Msa0996980 | Msa1406840 | 0.823993 | 1.026840e-53 | -8.615850e-47 |
| Msa0998780 | Msa1406840 | 0.803827 | 2.894264e-49 | -8.615850e-47 |
| Msa1006030 | Msa1406840 | 0.814444 | 1.536224e-51 | -8.615850e-47 |
| Msa1006170 | Msa1406840 | 0.832841 | 7.508713e-56 | -8.615850e-47 |
| Msa1006220 | Msa1406840 | 0.803463 | 3.444801e-49 | -8.615850e-47 |
| Msa1021620 | Msa1406840 | 0.800975 | 1.120076e-48 | -8.615850e-47 |
| Msa1022510 | Msa1406840 | 0.804326 | 2.279523e-49 | -8.615850e-47 |
| Msa1024350 | Msa1406840 | 0.806774 | 6.985414e-50 | -8.615850e-47 |
| Msa1030320 | Msa1406840 | 0.806246 | 9.028322e-50 | -8.615850e-47 |
| Msa1048350 | Msa1406840 | 0.827804 | 1.277866e-54 | -8.615850e-47 |
| Msa1055450 | Msa1406840 | 0.808535 | 2.952629e-50 | -8.615850e-47 |
| Msa1059660 | Msa1406840 | 0.802547 | 5.327240e-49 | -8.615850e-47 |
| Msa1061670 | Msa1406840 | 0.827387 | 1.608891e-54 | -8.615850e-47 |
| Msa1064940 | Msa1406840 | 0.821829 | 3.278446e-53 | -8.615850e-47 |
| Msa1066150 | Msa1406840 | 0.811466 | 6.903988e-51 | -8.615850e-47 |
| Msa1068080 | Msa1406840 | 0.820613 | 6.252097e-53 | -8.615850e-47 |
| Msa1075030 | Msa1406840 | 0.804828 | 1.790981e-49 | -8.615850e-47 |
| Msa1079820 | Msa1406840 | 0.804710 | 1.895216e-49 | -8.615850e-47 |
| Msa1087370 | Msa1406840 | 0.808078 | 3.695833e-50 | -8.615850e-47 |
| Msa1100030 | Msa1406840 | 0.810230 | 1.278022e-50 | -8.615850e-47 |
| Msa1106680 | Msa1406840 | 0.825087 | 5.675637e-54 | -8.615850e-47 |
| Msa1106960 | Msa1406840 | 0.813911 | 2.013489e-51 | -8.615850e-47 |
| Msa0252930 | Msa1406840 | 0.814328 | 1.629418e-51 | -8.615850e-47 |
| Msa0261400 | Msa1406840 | 0.868577 | 5.889918e-66 | -8.615850e-47 |
| Msa0272210 | Msa1406840 | 0.815242 | 1.022216e-51 | -8.615850e-47 |
| Msa0274250 | Msa1406840 | 0.819137 | 1.360110e-52 | -8.615850e-47 |
| Msa0278950 | Msa1406840 | 0.821587 | 3.729534e-53 | -8.615850e-47 |
| Msa0281190 | Msa1406840 | 0.820637 | 6.174196e-53 | -8.615850e-47 |
| Msa0288540 | Msa1406840 | 0.832022 | 1.198339e-55 | -8.615850e-47 |
| Msa0299030 | Msa1406840 | 0.876142 | 1.765744e-68 | -8.615850e-47 |
| Msa0314440 | Msa1406840 | 0.804717 | 1.888899e-49 | -8.615850e-47 |
| Msa0326770 | Msa1406840 | 0.846813 | 1.716019e-59 | -8.615850e-47 |
| Msa0328090 | Msa1406840 | 0.805385 | 1.369210e-49 | -8.615850e-47 |
| Msa0328100 | Msa1406840 | 0.805289 | 1.434411e-49 | -8.615850e-47 |
| Msa0342660 | Msa1406840 | 0.848035 | 7.921271e-60 | -8.615850e-47 |
| Msa0354600 | Msa1406840 | 0.807805 | 4.224734e-50 | -8.615850e-47 |
| Msa1108560 | Msa1406840 | 0.812759 | 3.607457e-51 | -8.615850e-47 |
| Msa1124660 | Msa1406840 | 0.807282 | 5.453762e-50 | -8.615850e-47 |
| Msa1138110 | Msa1406840 | 0.800399 | 1.468155e-48 | -8.615850e-47 |
| Msa1147030 | Msa1406840 | 0.843437 | 1.401850e-58 | -8.615850e-47 |
| Msa1148210 | Msa1406840 | 0.830250 | 3.263797e-55 | -8.615850e-47 |
| Msa1152180 | Msa1406840 | 0.808946 | 2.412018e-50 | -8.615850e-47 |
| Msa1156240 | Msa1406840 | 0.837494 | 5.028132e-57 | -8.615850e-47 |
| Msa1157210 | Msa1406840 | 0.801795 | 7.606085e-49 | -8.615850e-47 |
| Msa1162750 | Msa1406840 | 0.806048 | 9.937493e-50 | -8.615850e-47 |
| Msa1170340 | Msa1406840 | 0.819838 | 9.412125e-53 | -8.615850e-47 |
| Msa1181090 | Msa1406840 | 0.845125 | 4.935602e-59 | -8.615850e-47 |
| Msa1191350 | Msa1406840 | 0.801013 | 1.099760e-48 | -8.615850e-47 |
| Msa1191630 | Msa1406840 | 0.804788 | 1.826120e-49 | -8.615850e-47 |
| Msa1191640 | Msa1406840 | 0.833628 | 4.780900e-56 | -8.615850e-47 |
| Msa1197910 | Msa1406840 | 0.819936 | 8.937123e-53 | -8.615850e-47 |
| Msa1205770 | Msa1406840 | 0.801398 | 9.175632e-49 | -8.615850e-47 |
| Msa1205910 | Msa1406840 | 0.836309 | 1.009027e-56 | -8.615850e-47 |
| Msa0502970 | Msa1406840 | 0.818831 | 1.596025e-52 | -8.615850e-47 |
| Msa0507600 | Msa1406840 | 0.811313 | 7.452105e-51 | -8.615850e-47 |
| Msa0523720 | Msa1406840 | 0.818191 | 2.229484e-52 | -8.615850e-47 |
| Msa0535570 | Msa1406840 | 0.826142 | 3.190418e-54 | -8.615850e-47 |
| Msa0536770 | Msa1406840 | 0.803353 | 3.630704e-49 | -8.615850e-47 |
| Msa0539620 | Msa1406840 | 0.809729 | 1.638256e-50 | -8.615850e-47 |
| Msa0549170 | Msa1406840 | 0.811455 | 6.941157e-51 | -8.615850e-47 |
| Msa0554660 | Msa1406840 | 0.811654 | 6.284613e-51 | -8.615850e-47 |
| Msa0555920 | Msa1406840 | 0.813545 | 2.424690e-51 | -8.615850e-47 |
| Msa0579530 | Msa1406840 | 0.807856 | 4.120147e-50 | -8.615850e-47 |
| Msa0580100 | Msa1406840 | 0.861738 | 8.305331e-64 | -8.615850e-47 |
| Msa0591490 | Msa1406840 | 0.845606 | 3.657091e-59 | -8.615850e-47 |
| Msa0593870 | Msa1406840 | 0.827491 | 1.519709e-54 | -8.615850e-47 |
| Msa0594630 | Msa1406840 | 0.837590 | 4.751555e-57 | -8.615850e-47 |
| Msa0854840 | Msa1406840 | 0.836393 | 9.607814e-57 | -8.615850e-47 |
| Msa0861730 | Msa1406840 | 0.830989 | 2.151801e-55 | -8.615850e-47 |
| Msa0873880 | Msa1406840 | 0.801456 | 8.929432e-49 | -8.615850e-47 |
| Msa0886800 | Msa1406840 | 0.807058 | 6.084463e-50 | -8.615850e-47 |
| Msa0893840 | Msa1406840 | 0.800608 | 1.330492e-48 | -8.615850e-47 |
| Msa0896920 | Msa1406840 | 0.828050 | 1.115138e-54 | -8.615850e-47 |
| Msa0896950 | Msa1406840 | 0.826640 | 2.428321e-54 | -8.615850e-47 |
| Msa0898830 | Msa1406840 | -0.815511 | 8.904597e-52 | -8.615850e-47 |
| Msa0898970 | Msa1406840 | 0.808691 | 2.735282e-50 | -8.615850e-47 |
| Msa0906680 | Msa1406840 | 0.812362 | 4.404974e-51 | -8.615850e-47 |
| Msa0913550 | Msa1406840 | 0.833333 | 5.665677e-56 | -8.615850e-47 |
| Msa0922090 | Msa1406840 | 0.802942 | 4.415703e-49 | -8.615850e-47 |
| Msa0930210 | Msa1406840 | 0.802817 | 4.685752e-49 | -8.615850e-47 |
| Msa0941120 | Msa1406840 | 0.810460 | 1.140048e-50 | -8.615850e-47 |
| Msa0946010 | Msa1406840 | 0.856690 | 2.713433e-62 | -8.615850e-47 |
| Msa0951150 | Msa1406840 | 0.845690 | 3.470057e-59 | -8.615850e-47 |
| Msa0959700 | Msa1406840 | 0.819639 | 1.045200e-52 | -8.615850e-47 |
| Msa0960870 | Msa1406840 | 0.802044 | 6.762317e-49 | -8.615850e-47 |
| Msa0964510 | Msa1406840 | 0.801433 | 9.024273e-49 | -8.615850e-47 |
| Msa0967900 | Msa1406840 | -0.800189 | 1.619945e-48 | -8.615850e-47 |
| Msa0975950 | Msa1406840 | 0.816359 | 5.759226e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406840 | MtrunA17_Chr2g0323511 | 75.325 | 154 | 36 | 1 | 26 | 179 | 94 | 245 | 1.36e-72 | 231 |
| Msa1406840 | MtrunA17_Chr2g0323511 | 71.429 | 84 | 24 | 0 | 190 | 273 | 349 | 432 | 7.01e-32 | 124 |
| Msa1406840 | MtrunA17_Chr2g0323511 | 84.906 | 53 | 8 | 0 | 3 | 55 | 1 | 53 | 5.76e-24 | 101 |
| Msa1406840 | MtrunA17_Chr2g0323471 | 56.024 | 166 | 62 | 4 | 57 | 217 | 132 | 291 | 3.35e-55 | 186 |
| Msa1406840 | MtrunA17_Chr2g0323471 | 64.286 | 84 | 30 | 0 | 190 | 273 | 344 | 427 | 6.29e-30 | 118 |
| Msa1406840 | MtrunA17_Chr8g0339641 | 63.492 | 126 | 41 | 3 | 57 | 180 | 112 | 234 | 1.49e-46 | 163 |
| Msa1406840 | MtrunA17_Chr8g0339641 | 62.963 | 81 | 29 | 1 | 194 | 273 | 340 | 420 | 1.37e-24 | 103 |
| Msa1406840 | MtrunA17_Chr8g0339641 | 60.377 | 53 | 9 | 1 | 17 | 57 | 2 | 54 | 2.88e-12 | 67.0 |
| Msa1406840 | MtrunA17_Chr2g0323441 | 89.062 | 64 | 7 | 0 | 57 | 120 | 112 | 175 | 1.68e-33 | 121 |
| Msa1406840 | MtrunA17_Chr2g0323441 | 86.111 | 36 | 5 | 0 | 18 | 53 | 2 | 37 | 2.38e-14 | 70.1 |
| Msa1406840 | MtrunA17_Chr7g0219881 | 36.946 | 203 | 100 | 6 | 9 | 210 | 71 | 246 | 2.66e-28 | 113 |
| Msa1406840 | MtrunA17_Chr3g0083761 | 39.041 | 146 | 77 | 2 | 35 | 179 | 90 | 224 | 3.27e-24 | 102 |
| Msa1406840 | MtrunA17_Chr3g0087901 | 32.031 | 128 | 77 | 3 | 57 | 183 | 115 | 233 | 6.06e-14 | 72.0 |
| Msa1406840 | MtrunA17_Chr6g0454741 | 30.667 | 150 | 75 | 5 | 28 | 172 | 38 | 163 | 2.24e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406840 | AT1G03940.1 | 37.705 | 122 | 67 | 3 | 57 | 176 | 116 | 230 | 4.60e-17 | 81.6 |
| Msa1406840 | AT1G03495.1 | 37.705 | 122 | 67 | 3 | 57 | 176 | 116 | 230 | 5.46e-17 | 80.9 |
Find 68 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCATTTCATGAAATTT+TGG | 0.059044 | tig0023247:-3998 | Msa1406840:CDS |
| GTCTCATAAACAGCCAATTT+TGG | 0.236198 | tig0023247:+3301 | None:intergenic |
| AATCGTTGATGCCTAATTAT+AGG | 0.244855 | tig0023247:-3369 | Msa1406840:CDS |
| ATACGAGGTGGAGGTAAATT+TGG | 0.246555 | tig0023247:+4137 | None:intergenic |
| TTAGAGAATTTCCTATAATT+AGG | 0.272716 | tig0023247:+3358 | None:intergenic |
| GTTGGTGATGGAACTAAATT+TGG | 0.291404 | tig0023247:+4481 | None:intergenic |
| GGTTGCTGGTTCACCAAAAT+TGG | 0.296365 | tig0023247:-3314 | Msa1406840:CDS |
| TATCACCTTCATGCTGAATT+TGG | 0.301546 | tig0023247:+4528 | None:intergenic |
| GTGACTTGAATAGCCATTAT+AGG | 0.302545 | tig0023247:+4089 | None:intergenic |
| TTTAAGAATGATGCTTTGTT+AGG | 0.320839 | tig0023247:-3397 | Msa1406840:CDS |
| GGCTGTTTATGAGACTGATT+TGG | 0.329795 | tig0023247:-3293 | Msa1406840:CDS |
| TTATAGGAAATTCTCTAAAC+CGG | 0.347519 | tig0023247:-3353 | Msa1406840:CDS |
| CATTCGTGTAATCCCTATAA+TGG | 0.357080 | tig0023247:-4102 | Msa1406840:CDS |
| TGACTTGAATAGCCATTATA+GGG | 0.360665 | tig0023247:+4090 | None:intergenic |
| ACGTCTCTTGTAGTGGTTGC+TGG | 0.360866 | tig0023247:-3328 | Msa1406840:CDS |
| ATTTCCCGTCTGCAGCAATA+TGG | 0.378457 | tig0023247:+4024 | None:intergenic |
| TGAACTGCATCAGATTTCTT+AGG | 0.382814 | tig0023247:+3260 | None:intergenic |
| TAGAAGAAGATACGATGAAT+TGG | 0.382944 | tig0023247:+4412 | None:intergenic |
| TATACAAGTTTAAGACCCTT+TGG | 0.383445 | tig0023247:+3867 | None:intergenic |
| TCTCTTTCTGATTGCAGAGA+TGG | 0.388820 | tig0023247:-3215 | Msa1406840:CDS |
| ATTCACAAGATGCTCAAAAC+TGG | 0.402278 | tig0023247:-4172 | Msa1406840:CDS |
| GCTGTTTATGAGACTGATTT+GGG | 0.426009 | tig0023247:-3292 | Msa1406840:CDS |
| TGGTATGTCGAAGAAAGTTA+AGG | 0.445120 | tig0023247:+4450 | None:intergenic |
| CTTTCTGATTGCAGAGATGG+TGG | 0.446881 | tig0023247:-3212 | Msa1406840:CDS |
| GTAAAGAGAGATGAGTTAGT+TGG | 0.455750 | tig0023247:-3472 | Msa1406840:CDS |
| TTTATGAGACTGATTTGGGT+GGG | 0.457038 | tig0023247:-3288 | Msa1406840:CDS |
| GGTGGAGGTGGAATTGAGAT+TGG | 0.460315 | tig0023247:-3194 | Msa1406840:CDS |
| CACATAGAGAAACCGGAGTT+CGG | 0.461783 | tig0023247:+4059 | None:intergenic |
| AGGTGGAATTGAGATTGGTT+TGG | 0.473934 | tig0023247:-3189 | Msa1406840:CDS |
| GTCACTGTTCTTCCGAACTC+CGG | 0.487247 | tig0023247:-4071 | Msa1406840:CDS |
| TATGAGACTGATTTGGGTGG+GGG | 0.487390 | tig0023247:-3286 | Msa1406840:CDS |
| GGTATGTCGAAGAAAGTTAA+GGG | 0.489263 | tig0023247:+4451 | None:intergenic |
| AGAAGAAGATACGATGAATT+GGG | 0.491688 | tig0023247:+4413 | None:intergenic |
| ACTGAGGCACATAGAGAAAC+CGG | 0.493039 | tig0023247:+4052 | None:intergenic |
| TTATGAGACTGATTTGGGTG+GGG | 0.508465 | tig0023247:-3287 | Msa1406840:CDS |
| GGGATTGTTGTGGCTTCAAA+TGG | 0.510486 | tig0023247:-3442 | Msa1406840:CDS |
| AAATCGAAACGGACAAATCA+AGG | 0.510557 | tig0023247:+3237 | None:intergenic |
| AAGGGGAGAATGGTTGGTGA+TGG | 0.521926 | tig0023247:+4469 | None:intergenic |
| GGTGATGGAACTAAATTTGG+TGG | 0.531792 | tig0023247:+4484 | None:intergenic |
| ACTCTATTTCTTTCATGTGA+AGG | 0.532029 | tig0023247:+3897 | None:intergenic |
| AGATTGGTTTGGCTCTTGAG+AGG | 0.535803 | tig0023247:-3178 | Msa1406840:CDS |
| GTTTATGAGACTGATTTGGG+TGG | 0.548817 | tig0023247:-3289 | Msa1406840:CDS |
| AAAGTTAAGGGGAGAATGGT+TGG | 0.550742 | tig0023247:+4463 | None:intergenic |
| GAAGAAAGTTAAGGGGAGAA+TGG | 0.561998 | tig0023247:+4459 | None:intergenic |
| GGAGGTAAATTTGGAACAAG+AGG | 0.565375 | tig0023247:+4146 | None:intergenic |
| TACAACCATATTGCTGCAGA+CGG | 0.567282 | tig0023247:-4029 | Msa1406840:CDS |
| TCTTGTTCTATACGAGGTGG+AGG | 0.569390 | tig0023247:+4128 | None:intergenic |
| AAATAGAGTTAAAGATCCAA+AGG | 0.571917 | tig0023247:-3883 | Msa1406840:CDS |
| ACCGGGTACGTCTCTTGTAG+TGG | 0.574375 | tig0023247:-3335 | Msa1406840:CDS |
| GATTGCAGAGATGGTGGAGG+TGG | 0.575491 | tig0023247:-3206 | Msa1406840:CDS |
| AATAGAGTTAAAGATCCAAA+GGG | 0.576796 | tig0023247:-3882 | Msa1406840:CDS |
| GCAGATTGTCGTGATAGCGT+TGG | 0.581739 | tig0023247:-3548 | Msa1406840:intron |
| TAACTTTCTTCGACATACCA+TGG | 0.593348 | tig0023247:-4447 | Msa1406840:CDS |
| ATCAGAAAGAGAAATCGAAA+CGG | 0.596473 | tig0023247:+3226 | None:intergenic |
| TCTGATTGCAGAGATGGTGG+AGG | 0.603040 | tig0023247:-3209 | Msa1406840:CDS |
| ACAACCATATTGCTGCAGAC+GGG | 0.604720 | tig0023247:-4028 | Msa1406840:CDS |
| TATAGGAAATTCTCTAAACC+GGG | 0.606160 | tig0023247:-3352 | Msa1406840:CDS |
| CGAGACCAAATTCAGCATGA+AGG | 0.615814 | tig0023247:-4533 | Msa1406840:CDS |
| TCATGTGAAGGAAGATCAAG+AGG | 0.624288 | tig0023247:+3909 | None:intergenic |
| TTATCTTGTTCTATACGAGG+TGG | 0.627129 | tig0023247:+4125 | None:intergenic |
| GATGGAACTAAATTTGGTGG+TGG | 0.629084 | tig0023247:+4487 | None:intergenic |
| CAGCAATATGGTTGTAACTG+AGG | 0.640682 | tig0023247:+4036 | None:intergenic |
| TTGTATTGCATCTAATGCTG+TGG | 0.648941 | tig0023247:-3497 | Msa1406840:CDS |
| ACCACTACAAGAGACGTACC+CGG | 0.658474 | tig0023247:+3334 | None:intergenic |
| ATGTTATCTTGTTCTATACG+AGG | 0.669004 | tig0023247:+4122 | None:intergenic |
| GTATGTCGAAGAAAGTTAAG+GGG | 0.670105 | tig0023247:+4452 | None:intergenic |
| TGTGAAGGAAGATCAAGAGG+CGG | 0.686663 | tig0023247:+3912 | None:intergenic |
| ATTGGGTCACAATAAAACCA+TGG | 0.688914 | tig0023247:+4430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATCATTTCATGAAATTT+TGG | - | tig0023247:3738-3757 | Msa1406840:intron | 20.0% |
| !!! | TCATCATTTCATGAAATTTT+GGG | - | tig0023247:3739-3758 | Msa1406840:intron | 20.0% |
| !!! | TTTGTTATTGTTTTTTGCTA+TGG | + | tig0023247:3780-3799 | None:intergenic | 20.0% |
| !! | TTTCATTACCAAAAACTTAT+TGG | - | tig0023247:4213-4232 | Msa1406840:intron | 20.0% |
| !!! | TACAATTTCCAATAAGTTTT+TGG | + | tig0023247:4224-4243 | None:intergenic | 20.0% |
| !! | TTAGAGAATTTCCTATAATT+AGG | + | tig0023247:4381-4400 | None:intergenic | 20.0% |
| !!! | TTCATCATTTCATGAAATTT+TGG | - | tig0023247:3738-3757 | Msa1406840:intron | 20.0% |
| !!! | TCATCATTTCATGAAATTTT+GGG | - | tig0023247:3739-3758 | Msa1406840:intron | 20.0% |
| !!! | TTTGTTATTGTTTTTTGCTA+TGG | + | tig0023247:3780-3799 | None:intergenic | 20.0% |
| !! | TTTCATTACCAAAAACTTAT+TGG | - | tig0023247:4213-4232 | Msa1406840:intron | 20.0% |
| !!! | TACAATTTCCAATAAGTTTT+TGG | + | tig0023247:4224-4243 | None:intergenic | 20.0% |
| !! | TTAGAGAATTTCCTATAATT+AGG | + | tig0023247:4381-4400 | None:intergenic | 20.0% |
| ! | AAATAGAGTTAAAGATCCAA+AGG | - | tig0023247:3853-3872 | Msa1406840:CDS | 25.0% |
| ! | AATAGAGTTAAAGATCCAAA+GGG | - | tig0023247:3854-3873 | Msa1406840:CDS | 25.0% |
| ! | AGATTCTGTATCAAAAGAAA+TGG | - | tig0023247:3907-3926 | Msa1406840:CDS | 25.0% |
| ! | TATCAAAAGAAATGGAATCT+GGG | - | tig0023247:3915-3934 | Msa1406840:CDS | 25.0% |
| !!! | TTGGTTTTGTATGATCAAAT+CGG | - | tig0023247:4091-4110 | Msa1406840:CDS | 25.0% |
| ! | ATGAGTTAGTTGGAAAAAAT+GGG | - | tig0023247:4274-4293 | Msa1406840:intron | 25.0% |
| !! | TTTAAGAATGATGCTTTGTT+AGG | - | tig0023247:4339-4358 | Msa1406840:intron | 25.0% |
| ! | TTATAGGAAATTCTCTAAAC+CGG | - | tig0023247:4383-4402 | Msa1406840:intron | 25.0% |
| ! | AAATAGAGTTAAAGATCCAA+AGG | - | tig0023247:3853-3872 | Msa1406840:CDS | 25.0% |
| ! | AATAGAGTTAAAGATCCAAA+GGG | - | tig0023247:3854-3873 | Msa1406840:CDS | 25.0% |
| ! | AGATTCTGTATCAAAAGAAA+TGG | - | tig0023247:3907-3926 | Msa1406840:CDS | 25.0% |
| ! | TATCAAAAGAAATGGAATCT+GGG | - | tig0023247:3915-3934 | Msa1406840:CDS | 25.0% |
| !!! | TTGGTTTTGTATGATCAAAT+CGG | - | tig0023247:4091-4110 | Msa1406840:CDS | 25.0% |
| ! | ATGAGTTAGTTGGAAAAAAT+GGG | - | tig0023247:4274-4293 | Msa1406840:intron | 25.0% |
| !! | TTTAAGAATGATGCTTTGTT+AGG | - | tig0023247:4339-4358 | Msa1406840:intron | 25.0% |
| ! | TTATAGGAAATTCTCTAAAC+CGG | - | tig0023247:4383-4402 | Msa1406840:intron | 25.0% |
| AGAAGAAGATACGATGAATT+GGG | + | tig0023247:3326-3345 | None:intergenic | 30.0% | |
| TAGAAGAAGATACGATGAAT+TGG | + | tig0023247:3327-3346 | None:intergenic | 30.0% | |
| ATGTTATCTTGTTCTATACG+AGG | + | tig0023247:3617-3636 | None:intergenic | 30.0% | |
| TGACTTGAATAGCCATTATA+GGG | + | tig0023247:3649-3668 | None:intergenic | 30.0% | |
| !! | TTTTGCTATGGCTTTTGAAA+GGG | + | tig0023247:3768-3787 | None:intergenic | 30.0% |
| !! | TTTTTGCTATGGCTTTTGAA+AGG | + | tig0023247:3769-3788 | None:intergenic | 30.0% |
| ! | ACTCTATTTCTTTCATGTGA+AGG | + | tig0023247:3842-3861 | None:intergenic | 30.0% |
| ! | TATACAAGTTTAAGACCCTT+TGG | + | tig0023247:3872-3891 | None:intergenic | 30.0% |
| GTATCAAAAGAAATGGAATC+TGG | - | tig0023247:3914-3933 | Msa1406840:CDS | 30.0% | |
| TTGTAACAAGTTCCTTGATT+TGG | - | tig0023247:4072-4091 | Msa1406840:CDS | 30.0% | |
| GATCATACAAAACCAAATCA+AGG | + | tig0023247:4087-4106 | None:intergenic | 30.0% | |
| GATGAGTTAGTTGGAAAAAA+TGG | - | tig0023247:4273-4292 | Msa1406840:intron | 30.0% | |
| AATCGTTGATGCCTAATTAT+AGG | - | tig0023247:4367-4386 | Msa1406840:intron | 30.0% | |
| TATAGGAAATTCTCTAAACC+GGG | - | tig0023247:4384-4403 | Msa1406840:intron | 30.0% | |
| ATCAGAAAGAGAAATCGAAA+CGG | + | tig0023247:4513-4532 | None:intergenic | 30.0% | |
| AGAAGAAGATACGATGAATT+GGG | + | tig0023247:3326-3345 | None:intergenic | 30.0% | |
| TAGAAGAAGATACGATGAAT+TGG | + | tig0023247:3327-3346 | None:intergenic | 30.0% | |
| ATGTTATCTTGTTCTATACG+AGG | + | tig0023247:3617-3636 | None:intergenic | 30.0% | |
| TGACTTGAATAGCCATTATA+GGG | + | tig0023247:3649-3668 | None:intergenic | 30.0% | |
| !! | TTTTGCTATGGCTTTTGAAA+GGG | + | tig0023247:3768-3787 | None:intergenic | 30.0% |
| !! | TTTTTGCTATGGCTTTTGAA+AGG | + | tig0023247:3769-3788 | None:intergenic | 30.0% |
| ! | ACTCTATTTCTTTCATGTGA+AGG | + | tig0023247:3842-3861 | None:intergenic | 30.0% |
| ! | TATACAAGTTTAAGACCCTT+TGG | + | tig0023247:3872-3891 | None:intergenic | 30.0% |
| GTATCAAAAGAAATGGAATC+TGG | - | tig0023247:3914-3933 | Msa1406840:CDS | 30.0% | |
| TTGTAACAAGTTCCTTGATT+TGG | - | tig0023247:4072-4091 | Msa1406840:CDS | 30.0% | |
| GATCATACAAAACCAAATCA+AGG | + | tig0023247:4087-4106 | None:intergenic | 30.0% | |
| GATGAGTTAGTTGGAAAAAA+TGG | - | tig0023247:4273-4292 | Msa1406840:intron | 30.0% | |
| AATCGTTGATGCCTAATTAT+AGG | - | tig0023247:4367-4386 | Msa1406840:intron | 30.0% | |
| TATAGGAAATTCTCTAAACC+GGG | - | tig0023247:4384-4403 | Msa1406840:intron | 30.0% | |
| ATCAGAAAGAGAAATCGAAA+CGG | + | tig0023247:4513-4532 | None:intergenic | 30.0% | |
| TATCACCTTCATGCTGAATT+TGG | + | tig0023247:3211-3230 | None:intergenic | 35.0% | |
| !! | GTTGGTGATGGAACTAAATT+TGG | + | tig0023247:3258-3277 | None:intergenic | 35.0% |
| GTATGTCGAAGAAAGTTAAG+GGG | + | tig0023247:3287-3306 | None:intergenic | 35.0% | |
| GGTATGTCGAAGAAAGTTAA+GGG | + | tig0023247:3288-3307 | None:intergenic | 35.0% | |
| TGGTATGTCGAAGAAAGTTA+AGG | + | tig0023247:3289-3308 | None:intergenic | 35.0% | |
| TAACTTTCTTCGACATACCA+TGG | - | tig0023247:3289-3308 | Msa1406840:CDS | 35.0% | |
| ATTGGGTCACAATAAAACCA+TGG | + | tig0023247:3309-3328 | None:intergenic | 35.0% | |
| GAAAGTGAGTGTTTGAGAAT+GGG | + | tig0023247:3393-3412 | None:intergenic | 35.0% | |
| !! | TATGTAAGGAGGAGTGTTAT+GGG | + | tig0023247:3472-3491 | None:intergenic | 35.0% |
| TCATCAAGGTAACGTATGTA+AGG | + | tig0023247:3486-3505 | None:intergenic | 35.0% | |
| ATTCACAAGATGCTCAAAAC+TGG | - | tig0023247:3564-3583 | Msa1406840:intron | 35.0% | |
| TTATCTTGTTCTATACGAGG+TGG | + | tig0023247:3614-3633 | None:intergenic | 35.0% | |
| CATTCGTGTAATCCCTATAA+TGG | - | tig0023247:3634-3653 | Msa1406840:intron | 35.0% | |
| GTGACTTGAATAGCCATTAT+AGG | + | tig0023247:3650-3669 | None:intergenic | 35.0% | |
| AAAGAAATGGAATCTGGGTT+TGG | - | tig0023247:3920-3939 | Msa1406840:CDS | 35.0% | |
| TCGAGATTCTTATGTTAGCA+AGG | - | tig0023247:3944-3963 | Msa1406840:CDS | 35.0% | |
| AAGTCCAGAAGTTGAAGAAA+TGG | - | tig0023247:3997-4016 | Msa1406840:CDS | 35.0% | |
| AGTCCAGAAGTTGAAGAAAT+GGG | - | tig0023247:3998-4017 | Msa1406840:CDS | 35.0% | |
| TAACCCATTTCTTCAACTTC+TGG | + | tig0023247:4004-4023 | None:intergenic | 35.0% | |
| ! | GTTTTGTATGATCAAATCGG+AGG | - | tig0023247:4094-4113 | Msa1406840:CDS | 35.0% |
| TTGTATTGCATCTAATGCTG+TGG | - | tig0023247:4239-4258 | Msa1406840:intron | 35.0% | |
| GTAAAGAGAGATGAGTTAGT+TGG | - | tig0023247:4264-4283 | Msa1406840:intron | 35.0% | |
| TGGAAAAAATGGGATTGTTG+TGG | - | tig0023247:4284-4303 | Msa1406840:intron | 35.0% | |
| ! | GTCTCATAAACAGCCAATTT+TGG | + | tig0023247:4438-4457 | None:intergenic | 35.0% |
| ! | GCTGTTTATGAGACTGATTT+GGG | - | tig0023247:4444-4463 | Msa1406840:CDS | 35.0% |
| !! | TTTATGAGACTGATTTGGGT+GGG | - | tig0023247:4448-4467 | Msa1406840:CDS | 35.0% |
| TGAACTGCATCAGATTTCTT+AGG | + | tig0023247:4479-4498 | None:intergenic | 35.0% | |
| AAATCGAAACGGACAAATCA+AGG | + | tig0023247:4502-4521 | None:intergenic | 35.0% | |
| TATCACCTTCATGCTGAATT+TGG | + | tig0023247:3211-3230 | None:intergenic | 35.0% | |
| !! | GTTGGTGATGGAACTAAATT+TGG | + | tig0023247:3258-3277 | None:intergenic | 35.0% |
| GTATGTCGAAGAAAGTTAAG+GGG | + | tig0023247:3287-3306 | None:intergenic | 35.0% | |
| GGTATGTCGAAGAAAGTTAA+GGG | + | tig0023247:3288-3307 | None:intergenic | 35.0% | |
| TGGTATGTCGAAGAAAGTTA+AGG | + | tig0023247:3289-3308 | None:intergenic | 35.0% | |
| TAACTTTCTTCGACATACCA+TGG | - | tig0023247:3289-3308 | Msa1406840:CDS | 35.0% | |
| ATTGGGTCACAATAAAACCA+TGG | + | tig0023247:3309-3328 | None:intergenic | 35.0% | |
| GAAAGTGAGTGTTTGAGAAT+GGG | + | tig0023247:3393-3412 | None:intergenic | 35.0% | |
| !! | TATGTAAGGAGGAGTGTTAT+GGG | + | tig0023247:3472-3491 | None:intergenic | 35.0% |
| TCATCAAGGTAACGTATGTA+AGG | + | tig0023247:3486-3505 | None:intergenic | 35.0% | |
| ATTCACAAGATGCTCAAAAC+TGG | - | tig0023247:3564-3583 | Msa1406840:intron | 35.0% | |
| TTATCTTGTTCTATACGAGG+TGG | + | tig0023247:3614-3633 | None:intergenic | 35.0% | |
| CATTCGTGTAATCCCTATAA+TGG | - | tig0023247:3634-3653 | Msa1406840:intron | 35.0% | |
| GTGACTTGAATAGCCATTAT+AGG | + | tig0023247:3650-3669 | None:intergenic | 35.0% | |
| AAAGAAATGGAATCTGGGTT+TGG | - | tig0023247:3920-3939 | Msa1406840:CDS | 35.0% | |
| TCGAGATTCTTATGTTAGCA+AGG | - | tig0023247:3944-3963 | Msa1406840:CDS | 35.0% | |
| AAGTCCAGAAGTTGAAGAAA+TGG | - | tig0023247:3997-4016 | Msa1406840:CDS | 35.0% | |
| AGTCCAGAAGTTGAAGAAAT+GGG | - | tig0023247:3998-4017 | Msa1406840:CDS | 35.0% | |
| TAACCCATTTCTTCAACTTC+TGG | + | tig0023247:4004-4023 | None:intergenic | 35.0% | |
| ! | GTTTTGTATGATCAAATCGG+AGG | - | tig0023247:4094-4113 | Msa1406840:CDS | 35.0% |
| TTGTATTGCATCTAATGCTG+TGG | - | tig0023247:4239-4258 | Msa1406840:intron | 35.0% | |
| GTAAAGAGAGATGAGTTAGT+TGG | - | tig0023247:4264-4283 | Msa1406840:intron | 35.0% | |
| TGGAAAAAATGGGATTGTTG+TGG | - | tig0023247:4284-4303 | Msa1406840:intron | 35.0% | |
| ! | GTCTCATAAACAGCCAATTT+TGG | + | tig0023247:4438-4457 | None:intergenic | 35.0% |
| ! | GCTGTTTATGAGACTGATTT+GGG | - | tig0023247:4444-4463 | Msa1406840:CDS | 35.0% |
| !! | TTTATGAGACTGATTTGGGT+GGG | - | tig0023247:4448-4467 | Msa1406840:CDS | 35.0% |
| TGAACTGCATCAGATTTCTT+AGG | + | tig0023247:4479-4498 | None:intergenic | 35.0% | |
| AAATCGAAACGGACAAATCA+AGG | + | tig0023247:4502-4521 | None:intergenic | 35.0% | |
| ! | GATGGAACTAAATTTGGTGG+TGG | + | tig0023247:3252-3271 | None:intergenic | 40.0% |
| !! | GGTGATGGAACTAAATTTGG+TGG | + | tig0023247:3255-3274 | None:intergenic | 40.0% |
| AAAGTTAAGGGGAGAATGGT+TGG | + | tig0023247:3276-3295 | None:intergenic | 40.0% | |
| GAAGAAAGTTAAGGGGAGAA+TGG | + | tig0023247:3280-3299 | None:intergenic | 40.0% | |
| GTTTGTAGGAAGTGATGAGT+TGG | + | tig0023247:3363-3382 | None:intergenic | 40.0% | |
| !! | GAATGGGAAGTGTTGTTTGT+AGG | + | tig0023247:3377-3396 | None:intergenic | 40.0% |
| GGAAAGTGAGTGTTTGAGAA+TGG | + | tig0023247:3394-3413 | None:intergenic | 40.0% | |
| !! | AAAGAAGTGTTGGAGGGTTA+AGG | + | tig0023247:3415-3434 | None:intergenic | 40.0% |
| GAGTGTTATGGGAATTTGGA+GGG | + | tig0023247:3461-3480 | None:intergenic | 40.0% | |
| !! | GTATGTAAGGAGGAGTGTTA+TGG | + | tig0023247:3473-3492 | None:intergenic | 40.0% |
| TCAAGGTAACGTATGTAAGG+AGG | + | tig0023247:3483-3502 | None:intergenic | 40.0% | |
| AGGAGATAGAGTCTTCATCA+AGG | + | tig0023247:3500-3519 | None:intergenic | 40.0% | |
| ! | GGAGGTAAATTTGGAACAAG+AGG | + | tig0023247:3593-3612 | None:intergenic | 40.0% |
| ATACGAGGTGGAGGTAAATT+TGG | + | tig0023247:3602-3621 | None:intergenic | 40.0% | |
| CAGCAATATGGTTGTAACTG+AGG | + | tig0023247:3703-3722 | None:intergenic | 40.0% | |
| TACAACCATATTGCTGCAGA+CGG | - | tig0023247:3707-3726 | Msa1406840:intron | 40.0% | |
| TCATGTGAAGGAAGATCAAG+AGG | + | tig0023247:3830-3849 | None:intergenic | 40.0% | |
| TTGTATGATCAAATCGGAGG+AGG | - | tig0023247:4097-4116 | Msa1406840:CDS | 40.0% | |
| TGTATGATCAAATCGGAGGA+GGG | - | tig0023247:4098-4117 | Msa1406840:CDS | 40.0% | |
| GGTGATAGCAAAAGTGATCA+AGG | - | tig0023247:4119-4138 | Msa1406840:CDS | 40.0% | |
| AGCAAAAGTGATCAAGGTGA+AGG | - | tig0023247:4125-4144 | Msa1406840:CDS | 40.0% | |
| GGCTGTTTATGAGACTGATT+TGG | - | tig0023247:4443-4462 | Msa1406840:CDS | 40.0% | |
| !! | GTTTATGAGACTGATTTGGG+TGG | - | tig0023247:4447-4466 | Msa1406840:CDS | 40.0% |
| !! | TTATGAGACTGATTTGGGTG+GGG | - | tig0023247:4449-4468 | Msa1406840:CDS | 40.0% |
| TCTCTTTCTGATTGCAGAGA+TGG | - | tig0023247:4521-4540 | Msa1406840:CDS | 40.0% | |
| ! | AGGTGGAATTGAGATTGGTT+TGG | - | tig0023247:4547-4566 | Msa1406840:CDS | 40.0% |
| ! | GATGGAACTAAATTTGGTGG+TGG | + | tig0023247:3252-3271 | None:intergenic | 40.0% |
| !! | GGTGATGGAACTAAATTTGG+TGG | + | tig0023247:3255-3274 | None:intergenic | 40.0% |
| AAAGTTAAGGGGAGAATGGT+TGG | + | tig0023247:3276-3295 | None:intergenic | 40.0% | |
| GAAGAAAGTTAAGGGGAGAA+TGG | + | tig0023247:3280-3299 | None:intergenic | 40.0% | |
| GTTTGTAGGAAGTGATGAGT+TGG | + | tig0023247:3363-3382 | None:intergenic | 40.0% | |
| !! | GAATGGGAAGTGTTGTTTGT+AGG | + | tig0023247:3377-3396 | None:intergenic | 40.0% |
| GGAAAGTGAGTGTTTGAGAA+TGG | + | tig0023247:3394-3413 | None:intergenic | 40.0% | |
| !! | AAAGAAGTGTTGGAGGGTTA+AGG | + | tig0023247:3415-3434 | None:intergenic | 40.0% |
| GAGTGTTATGGGAATTTGGA+GGG | + | tig0023247:3461-3480 | None:intergenic | 40.0% | |
| !! | GTATGTAAGGAGGAGTGTTA+TGG | + | tig0023247:3473-3492 | None:intergenic | 40.0% |
| TCAAGGTAACGTATGTAAGG+AGG | + | tig0023247:3483-3502 | None:intergenic | 40.0% | |
| AGGAGATAGAGTCTTCATCA+AGG | + | tig0023247:3500-3519 | None:intergenic | 40.0% | |
| ! | GGAGGTAAATTTGGAACAAG+AGG | + | tig0023247:3593-3612 | None:intergenic | 40.0% |
| ATACGAGGTGGAGGTAAATT+TGG | + | tig0023247:3602-3621 | None:intergenic | 40.0% | |
| CAGCAATATGGTTGTAACTG+AGG | + | tig0023247:3703-3722 | None:intergenic | 40.0% | |
| TACAACCATATTGCTGCAGA+CGG | - | tig0023247:3707-3726 | Msa1406840:intron | 40.0% | |
| TCATGTGAAGGAAGATCAAG+AGG | + | tig0023247:3830-3849 | None:intergenic | 40.0% | |
| TTGTATGATCAAATCGGAGG+AGG | - | tig0023247:4097-4116 | Msa1406840:CDS | 40.0% | |
| TGTATGATCAAATCGGAGGA+GGG | - | tig0023247:4098-4117 | Msa1406840:CDS | 40.0% | |
| GGTGATAGCAAAAGTGATCA+AGG | - | tig0023247:4119-4138 | Msa1406840:CDS | 40.0% | |
| AGCAAAAGTGATCAAGGTGA+AGG | - | tig0023247:4125-4144 | Msa1406840:CDS | 40.0% | |
| GGCTGTTTATGAGACTGATT+TGG | - | tig0023247:4443-4462 | Msa1406840:CDS | 40.0% | |
| !! | GTTTATGAGACTGATTTGGG+TGG | - | tig0023247:4447-4466 | Msa1406840:CDS | 40.0% |
| !! | TTATGAGACTGATTTGGGTG+GGG | - | tig0023247:4449-4468 | Msa1406840:CDS | 40.0% |
| TCTCTTTCTGATTGCAGAGA+TGG | - | tig0023247:4521-4540 | Msa1406840:CDS | 40.0% | |
| ! | AGGTGGAATTGAGATTGGTT+TGG | - | tig0023247:4547-4566 | Msa1406840:CDS | 40.0% |
| CGAGACCAAATTCAGCATGA+AGG | - | tig0023247:3203-3222 | Msa1406840:CDS | 45.0% | |
| ! | GATGAGTTGGATGAGGAAAG+TGG | + | tig0023247:3350-3369 | None:intergenic | 45.0% |
| ! | AGGAAGTGATGAGTTGGATG+AGG | + | tig0023247:3357-3376 | None:intergenic | 45.0% |
| !! | GAAGGGAAAGAAGTGTTGGA+GGG | + | tig0023247:3421-3440 | None:intergenic | 45.0% |
| !! | TGAAGGGAAAGAAGTGTTGG+AGG | + | tig0023247:3422-3441 | None:intergenic | 45.0% |
| ! | AGGTGAAGGGAAAGAAGTGT+TGG | + | tig0023247:3425-3444 | None:intergenic | 45.0% |
| ATGATGAGGTTGGAGGTGAA+GGG | + | tig0023247:3438-3457 | None:intergenic | 45.0% | |
| ATTTGGAGGGATGATGAGGT+TGG | + | tig0023247:3448-3467 | None:intergenic | 45.0% | |
| ! | GGAGTGTTATGGGAATTTGG+AGG | + | tig0023247:3462-3481 | None:intergenic | 45.0% |
| !! | GGAGGAGTGTTATGGGAATT+TGG | + | tig0023247:3465-3484 | None:intergenic | 45.0% |
| GAGAATGTTGAAGTCTGCTG+AGG | + | tig0023247:3537-3556 | None:intergenic | 45.0% | |
| TCTTGTTCTATACGAGGTGG+AGG | + | tig0023247:3611-3630 | None:intergenic | 45.0% | |
| CACATAGAGAAACCGGAGTT+CGG | + | tig0023247:3680-3699 | None:intergenic | 45.0% | |
| ACTGAGGCACATAGAGAAAC+CGG | + | tig0023247:3687-3706 | None:intergenic | 45.0% | |
| ACAACCATATTGCTGCAGAC+GGG | - | tig0023247:3708-3727 | Msa1406840:intron | 45.0% | |
| ATTTCCCGTCTGCAGCAATA+TGG | + | tig0023247:3715-3734 | None:intergenic | 45.0% | |
| !! | TGCTATGGCTTTTGAAAGGG+AGG | + | tig0023247:3765-3784 | None:intergenic | 45.0% |
| TGTGAAGGAAGATCAAGAGG+CGG | + | tig0023247:3827-3846 | None:intergenic | 45.0% | |
| GGGATTGTTGTGGCTTCAAA+TGG | - | tig0023247:4294-4313 | Msa1406840:intron | 45.0% | |
| !! | GGTTGCTGGTTCACCAAAAT+TGG | - | tig0023247:4422-4441 | Msa1406840:intron | 45.0% |
| !! | TATGAGACTGATTTGGGTGG+GGG | - | tig0023247:4450-4469 | Msa1406840:CDS | 45.0% |
| CTTTCTGATTGCAGAGATGG+TGG | - | tig0023247:4524-4543 | Msa1406840:CDS | 45.0% | |
| !! | AGATTGGTTTGGCTCTTGAG+AGG | - | tig0023247:4558-4577 | Msa1406840:CDS | 45.0% |
| CGAGACCAAATTCAGCATGA+AGG | - | tig0023247:3203-3222 | Msa1406840:CDS | 45.0% | |
| ! | GATGAGTTGGATGAGGAAAG+TGG | + | tig0023247:3350-3369 | None:intergenic | 45.0% |
| ! | AGGAAGTGATGAGTTGGATG+AGG | + | tig0023247:3357-3376 | None:intergenic | 45.0% |
| !! | GAAGGGAAAGAAGTGTTGGA+GGG | + | tig0023247:3421-3440 | None:intergenic | 45.0% |
| !! | TGAAGGGAAAGAAGTGTTGG+AGG | + | tig0023247:3422-3441 | None:intergenic | 45.0% |
| ! | AGGTGAAGGGAAAGAAGTGT+TGG | + | tig0023247:3425-3444 | None:intergenic | 45.0% |
| ATGATGAGGTTGGAGGTGAA+GGG | + | tig0023247:3438-3457 | None:intergenic | 45.0% | |
| ATTTGGAGGGATGATGAGGT+TGG | + | tig0023247:3448-3467 | None:intergenic | 45.0% | |
| ! | GGAGTGTTATGGGAATTTGG+AGG | + | tig0023247:3462-3481 | None:intergenic | 45.0% |
| !! | GGAGGAGTGTTATGGGAATT+TGG | + | tig0023247:3465-3484 | None:intergenic | 45.0% |
| GAGAATGTTGAAGTCTGCTG+AGG | + | tig0023247:3537-3556 | None:intergenic | 45.0% | |
| TCTTGTTCTATACGAGGTGG+AGG | + | tig0023247:3611-3630 | None:intergenic | 45.0% | |
| CACATAGAGAAACCGGAGTT+CGG | + | tig0023247:3680-3699 | None:intergenic | 45.0% | |
| ACTGAGGCACATAGAGAAAC+CGG | + | tig0023247:3687-3706 | None:intergenic | 45.0% | |
| ACAACCATATTGCTGCAGAC+GGG | - | tig0023247:3708-3727 | Msa1406840:intron | 45.0% | |
| ATTTCCCGTCTGCAGCAATA+TGG | + | tig0023247:3715-3734 | None:intergenic | 45.0% | |
| !! | TGCTATGGCTTTTGAAAGGG+AGG | + | tig0023247:3765-3784 | None:intergenic | 45.0% |
| TGTGAAGGAAGATCAAGAGG+CGG | + | tig0023247:3827-3846 | None:intergenic | 45.0% | |
| GGGATTGTTGTGGCTTCAAA+TGG | - | tig0023247:4294-4313 | Msa1406840:intron | 45.0% | |
| !! | GGTTGCTGGTTCACCAAAAT+TGG | - | tig0023247:4422-4441 | Msa1406840:intron | 45.0% |
| !! | TATGAGACTGATTTGGGTGG+GGG | - | tig0023247:4450-4469 | Msa1406840:CDS | 45.0% |
| CTTTCTGATTGCAGAGATGG+TGG | - | tig0023247:4524-4543 | Msa1406840:CDS | 45.0% | |
| !! | AGATTGGTTTGGCTCTTGAG+AGG | - | tig0023247:4558-4577 | Msa1406840:CDS | 45.0% |
| !! | AAGGGGAGAATGGTTGGTGA+TGG | + | tig0023247:3270-3289 | None:intergenic | 50.0% |
| GATGATGAGGTTGGAGGTGA+AGG | + | tig0023247:3439-3458 | None:intergenic | 50.0% | |
| GGGAATTTGGAGGGATGATG+AGG | + | tig0023247:3452-3471 | None:intergenic | 50.0% | |
| GTCACTGTTCTTCCGAACTC+CGG | - | tig0023247:3665-3684 | Msa1406840:intron | 50.0% | |
| ! | GCAGATTGTCGTGATAGCGT+TGG | - | tig0023247:4188-4207 | Msa1406840:CDS | 50.0% |
| ACCACTACAAGAGACGTACC+CGG | + | tig0023247:4405-4424 | None:intergenic | 50.0% | |
| ACGTCTCTTGTAGTGGTTGC+TGG | - | tig0023247:4408-4427 | Msa1406840:intron | 50.0% | |
| ! | TCTGATTGCAGAGATGGTGG+AGG | - | tig0023247:4527-4546 | Msa1406840:CDS | 50.0% |
| GGTGGAGGTGGAATTGAGAT+TGG | - | tig0023247:4542-4561 | Msa1406840:CDS | 50.0% | |
| !! | AAGGGGAGAATGGTTGGTGA+TGG | + | tig0023247:3270-3289 | None:intergenic | 50.0% |
| GATGATGAGGTTGGAGGTGA+AGG | + | tig0023247:3439-3458 | None:intergenic | 50.0% | |
| GGGAATTTGGAGGGATGATG+AGG | + | tig0023247:3452-3471 | None:intergenic | 50.0% | |
| GTCACTGTTCTTCCGAACTC+CGG | - | tig0023247:3665-3684 | Msa1406840:intron | 50.0% | |
| ! | GCAGATTGTCGTGATAGCGT+TGG | - | tig0023247:4188-4207 | Msa1406840:CDS | 50.0% |
| ACCACTACAAGAGACGTACC+CGG | + | tig0023247:4405-4424 | None:intergenic | 50.0% | |
| ACGTCTCTTGTAGTGGTTGC+TGG | - | tig0023247:4408-4427 | Msa1406840:intron | 50.0% | |
| ! | TCTGATTGCAGAGATGGTGG+AGG | - | tig0023247:4527-4546 | Msa1406840:CDS | 50.0% |
| GGTGGAGGTGGAATTGAGAT+TGG | - | tig0023247:4542-4561 | Msa1406840:CDS | 50.0% | |
| TGGAGGGATGATGAGGTTGG+AGG | + | tig0023247:3445-3464 | None:intergenic | 55.0% | |
| AGTCTGCTGAGGATCAGCGA+CGG | + | tig0023247:3526-3545 | None:intergenic | 55.0% | |
| ACCGGGTACGTCTCTTGTAG+TGG | - | tig0023247:4401-4420 | Msa1406840:intron | 55.0% | |
| !! | GATTGCAGAGATGGTGGAGG+TGG | - | tig0023247:4530-4549 | Msa1406840:CDS | 55.0% |
| TGGAGGGATGATGAGGTTGG+AGG | + | tig0023247:3445-3464 | None:intergenic | 55.0% | |
| AGTCTGCTGAGGATCAGCGA+CGG | + | tig0023247:3526-3545 | None:intergenic | 55.0% | |
| ACCGGGTACGTCTCTTGTAG+TGG | - | tig0023247:4401-4420 | Msa1406840:intron | 55.0% | |
| !! | GATTGCAGAGATGGTGGAGG+TGG | - | tig0023247:4530-4549 | Msa1406840:CDS | 55.0% |
| CTGAGGATCAGCGACGGTGA+AGG | + | tig0023247:3520-3539 | None:intergenic | 60.0% | |
| CTGAGGATCAGCGACGGTGA+AGG | + | tig0023247:3520-3539 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023247 | gene | 3168 | 4590 | 3168 | ID=Msa1406840;Name=Msa1406840 |
| tig0023247 | mRNA | 3168 | 4590 | 3168 | ID=Msa1406840-mRNA-1;Parent=Msa1406840;Name=Msa1406840-mRNA-1;_AED=0.20;_eAED=0.25;_QI=0|0|0|1|1|1|3|0|311 |
| tig0023247 | exon | 4425 | 4590 | 4425 | ID=Msa1406840-mRNA-1:exon:24818;Parent=Msa1406840-mRNA-1 |
| tig0023247 | exon | 3845 | 4215 | 3845 | ID=Msa1406840-mRNA-1:exon:24817;Parent=Msa1406840-mRNA-1 |
| tig0023247 | exon | 3168 | 3566 | 3168 | ID=Msa1406840-mRNA-1:exon:24816;Parent=Msa1406840-mRNA-1 |
| tig0023247 | CDS | 4425 | 4590 | 4425 | ID=Msa1406840-mRNA-1:cds;Parent=Msa1406840-mRNA-1 |
| tig0023247 | CDS | 3845 | 4215 | 3845 | ID=Msa1406840-mRNA-1:cds;Parent=Msa1406840-mRNA-1 |
| tig0023247 | CDS | 3168 | 3566 | 3168 | ID=Msa1406840-mRNA-1:cds;Parent=Msa1406840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
