AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0962050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962050 MtrunA17_Chr6g0481571 92.727 165 12 0 1 165 1 165 5.88e-112 315
Msa0962050 MtrunA17_Chr7g0253661 40.449 89 53 0 12 100 9 97 6.45e-20 82.4
Msa0962050 MtrunA17_Chr5g0440311 43.158 95 54 0 6 100 5 99 6.15e-19 80.9
Msa0962050 MtrunA17_Chr5g0440291 42.697 89 51 0 12 100 12 100 9.91e-19 80.1
Msa0962050 MtrunA17_Chr5g0440321 31.783 129 80 3 1 124 1 126 3.41e-15 70.9
Msa0962050 MtrunA17_Chr4g0060201 31.818 110 72 1 15 124 23 129 9.18e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962050 AT1G54400.1 43.750 96 53 1 7 101 6 101 1.50e-21 86.7
Msa0962050 AT2G27140.1 40.385 104 62 0 1 104 1 104 4.03e-21 86.3
Msa0962050 AT5G20970.1 40.000 115 66 2 12 124 8 121 5.72e-18 78.6
Msa0962050 AT5G04890.1 39.773 88 52 1 14 100 16 103 8.22e-15 71.2

Find 30 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAGAGAAACATTCATTT+TGG 0.198351 6_3:+84779113 Msa0962050:CDS
ATGAAAATGAAGCATAAATT+TGG 0.199243 6_3:+84779319 Msa0962050:three_prime_UTR
TTTCTCTATGGTTGCATCTT+TGG 0.207665 6_3:-84779101 None:intergenic
CCAAAATGAATGTTTCTCTA+TGG 0.325882 6_3:-84779113 None:intergenic
TCCTGATTTCTTTGTGGAAA+CGG 0.353868 6_3:-84778985 None:intergenic
ACAACAATTCAAATTGTGAT+TGG 0.374136 6_3:+84779157 Msa0962050:CDS
AAGGTTCAAACTAACGATAA+AGG 0.388478 6_3:+84778914 Msa0962050:CDS
GCCGTTTCCACAAAGAAATC+AGG 0.392632 6_3:+84778984 Msa0962050:CDS
TTGAAATCCTGATTTCTTTG+TGG 0.400095 6_3:-84778991 None:intergenic
AAACAACATCATGATGCATT+TGG 0.402983 6_3:+84779232 Msa0962050:CDS
GATTCTAGAGATTGATTTGA+AGG 0.403461 6_3:+84778217 Msa0962050:CDS
GCTAGTAGCTTCAGCAACTT+TGG 0.412797 6_3:-84778135 None:intergenic
TCAAATTGTGATTGGAGTAA+TGG 0.419262 6_3:+84779165 Msa0962050:CDS
TTTGTGATCCATTTGCAGTA+AGG 0.441165 6_3:-84778182 None:intergenic
AGGTTCAAACTAACGATAAA+GGG 0.452103 6_3:+84778915 Msa0962050:CDS
CAAGCGATTGTGATGTGAAT+GGG 0.459266 6_3:+84779011 Msa0962050:CDS
CCACCAGTCATCACATTCAA+TGG 0.464208 6_3:+84778109 Msa0962050:exon
ATTTATGGAGAAAGGACTCT+TGG 0.477919 6_3:+84778947 Msa0962050:CDS
TATCTTTGAAGAAAATTATG+TGG 0.515312 6_3:+84779422 Msa0962050:three_prime_UTR
CCATTGAATGTGATGACTGG+TGG 0.520038 6_3:-84778109 None:intergenic
TCAAGCGATTGTGATGTGAA+TGG 0.524717 6_3:+84779010 Msa0962050:CDS
TTTCCATTGAATGTGATGAC+TGG 0.550866 6_3:-84778112 None:intergenic
GTAATGGCTATGGTTGCACT+AGG 0.553548 6_3:+84779181 Msa0962050:CDS
ATTCTAGAGATTGATTTGAA+GGG 0.558175 6_3:+84778218 Msa0962050:CDS
TGTGATTGGAGTAATGGCTA+TGG 0.602709 6_3:+84779171 Msa0962050:CDS
TGCAAATGGATCACAAAGGA+AGG 0.605441 6_3:+84778188 Msa0962050:CDS
GGTTGCACTAGGGACTTATG+TGG 0.633161 6_3:+84779192 Msa0962050:CDS
TAATGGCTATGGTTGCACTA+GGG 0.679191 6_3:+84779182 Msa0962050:CDS
GTTTGATGAGAAAGTGAGCG+AGG 0.718574 6_3:+84779356 Msa0962050:three_prime_UTR
TTACTGCAAATGGATCACAA+AGG 0.775712 6_3:+84778184 Msa0962050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAATTTATTAAAAT+CGG - chr6_3:84778477-84778496 None:intergenic 0.0%
!! TATTAAAAATTTATTAAAAT+CGG - chr6_3:84778477-84778496 None:intergenic 0.0%
!!! TATGAAATTTATATTTTAAG+AGG + chr6_3:84778302-84778321 Msa0962050:intron 10.0%
!! ACTAATATTTGTTTATTAAA+TGG - chr6_3:84778837-84778856 None:intergenic 10.0%
!!! TATGAAATTTATATTTTAAG+AGG + chr6_3:84778302-84778321 Msa0962050:intron 10.0%
!! ACTAATATTTGTTTATTAAA+TGG - chr6_3:84778837-84778856 None:intergenic 10.0%
!!! AATTTAATATCTAAAATCAG+AGG + chr6_3:84778326-84778345 Msa0962050:intron 15.0%
!! AAATTTATTAAAATCGGAAA+GGG - chr6_3:84778471-84778490 None:intergenic 15.0%
!! AAAATTTATTAAAATCGGAA+AGG - chr6_3:84778472-84778491 None:intergenic 15.0%
!! ACATAAAATCCTTTATTATA+AGG + chr6_3:84778524-84778543 Msa0962050:intron 15.0%
!! CATAAAATCCTTTATTATAA+GGG + chr6_3:84778525-84778544 Msa0962050:intron 15.0%
!!! ACATTTGAAACATTTTTTTA+AGG + chr6_3:84778551-84778570 Msa0962050:intron 15.0%
!! AATTAGACAAAATAATTGTT+TGG - chr6_3:84778656-84778675 None:intergenic 15.0%
!!! TTTCTAACGTTTTTTATTTT+GGG - chr6_3:84778782-84778801 None:intergenic 15.0%
!!! ATTTCTAACGTTTTTTATTT+TGG - chr6_3:84778783-84778802 None:intergenic 15.0%
!!! ATAAACAAATATTAGTCTAA+TGG + chr6_3:84778841-84778860 Msa0962050:intron 15.0%
!!! AATTTAATATCTAAAATCAG+AGG + chr6_3:84778326-84778345 Msa0962050:intron 15.0%
!! AAATTTATTAAAATCGGAAA+GGG - chr6_3:84778471-84778490 None:intergenic 15.0%
!! AAAATTTATTAAAATCGGAA+AGG - chr6_3:84778472-84778491 None:intergenic 15.0%
!! ACATAAAATCCTTTATTATA+AGG + chr6_3:84778524-84778543 Msa0962050:intron 15.0%
!! CATAAAATCCTTTATTATAA+GGG + chr6_3:84778525-84778544 Msa0962050:intron 15.0%
!!! ACATTTGAAACATTTTTTTA+AGG + chr6_3:84778551-84778570 Msa0962050:intron 15.0%
!! AATTAGACAAAATAATTGTT+TGG - chr6_3:84778656-84778675 None:intergenic 15.0%
!!! TTTCTAACGTTTTTTATTTT+GGG - chr6_3:84778782-84778801 None:intergenic 15.0%
!!! ATTTCTAACGTTTTTTATTT+TGG - chr6_3:84778783-84778802 None:intergenic 15.0%
!!! ATAAACAAATATTAGTCTAA+TGG + chr6_3:84778841-84778860 Msa0962050:intron 15.0%
!! AGTTAGACCAAAAAAATTAT+AGG + chr6_3:84778379-84778398 Msa0962050:intron 20.0%
!!! AAAATTATATGTGGGTTATT+TGG + chr6_3:84778426-84778445 Msa0962050:intron 20.0%
!! TTATTTGGACAAAAAAAAAC+AGG + chr6_3:84778441-84778460 Msa0962050:intron 20.0%
!!! AAGGATTTTATGTTGAAAAA+GGG - chr6_3:84778517-84778536 None:intergenic 20.0%
!!! AAAGGATTTTATGTTGAAAA+AGG - chr6_3:84778518-84778537 None:intergenic 20.0%
!! AATGTAAACCCTTATAATAA+AGG - chr6_3:84778536-84778555 None:intergenic 20.0%
!!! TATTTCTCTTGAATCATTTT+AGG + chr6_3:84778872-84778891 Msa0962050:intron 20.0%
!!! AATCATTTTAGGTTTCAAAA+AGG + chr6_3:84778883-84778902 Msa0962050:intron 20.0%
!! ATGAAAATGAAGCATAAATT+TGG + chr6_3:84779319-84779338 Msa0962050:three_prime_UTR 20.0%
!!! TATCTTTGAAGAAAATTATG+TGG + chr6_3:84779422-84779441 Msa0962050:three_prime_UTR 20.0%
!! AAGAAAATTATGTGGAAAAA+AGG + chr6_3:84779430-84779449 Msa0962050:three_prime_UTR 20.0%
!! AGAAAATTATGTGGAAAAAA+GGG + chr6_3:84779431-84779450 Msa0962050:three_prime_UTR 20.0%
!! AGTTAGACCAAAAAAATTAT+AGG + chr6_3:84778379-84778398 Msa0962050:intron 20.0%
!!! AAAATTATATGTGGGTTATT+TGG + chr6_3:84778426-84778445 Msa0962050:intron 20.0%
!! TTATTTGGACAAAAAAAAAC+AGG + chr6_3:84778441-84778460 Msa0962050:intron 20.0%
!!! AAGGATTTTATGTTGAAAAA+GGG - chr6_3:84778517-84778536 None:intergenic 20.0%
!!! AAAGGATTTTATGTTGAAAA+AGG - chr6_3:84778518-84778537 None:intergenic 20.0%
!! AATGTAAACCCTTATAATAA+AGG - chr6_3:84778536-84778555 None:intergenic 20.0%
!!! TATTTCTCTTGAATCATTTT+AGG + chr6_3:84778872-84778891 Msa0962050:intron 20.0%
!!! AATCATTTTAGGTTTCAAAA+AGG + chr6_3:84778883-84778902 Msa0962050:intron 20.0%
!! ATGAAAATGAAGCATAAATT+TGG + chr6_3:84779319-84779338 Msa0962050:three_prime_UTR 20.0%
!!! TATCTTTGAAGAAAATTATG+TGG + chr6_3:84779422-84779441 Msa0962050:three_prime_UTR 20.0%
!! AAGAAAATTATGTGGAAAAA+AGG + chr6_3:84779430-84779449 Msa0962050:three_prime_UTR 20.0%
!! AGAAAATTATGTGGAAAAAA+GGG + chr6_3:84779431-84779450 Msa0962050:three_prime_UTR 20.0%
!!! ATTCTAGAGATTGATTTGAA+GGG + chr6_3:84778218-84778237 Msa0962050:CDS 25.0%
! TAGACCAAAAAAATTATAGG+TGG + chr6_3:84778382-84778401 Msa0962050:intron 25.0%
! AGACCAAAAAAATTATAGGT+GGG + chr6_3:84778383-84778402 Msa0962050:intron 25.0%
!!! TGGGGTTTTTTTTTTTTTTG+AGG + chr6_3:84778402-84778421 Msa0962050:intron 25.0%
!!! GGGGTTTTTTTTTTTTTTGA+GGG + chr6_3:84778403-84778422 Msa0962050:intron 25.0%
!!! TTTTGAGGGAAAATTATATG+TGG + chr6_3:84778417-84778436 Msa0962050:intron 25.0%
! TTTGAGGGAAAATTATATGT+GGG + chr6_3:84778418-84778437 Msa0962050:intron 25.0%
!! AGGATTTTATGTTGAAAAAG+GGG - chr6_3:84778516-84778535 None:intergenic 25.0%
!!! TTTTGAGAAGAAAAGATAGT+GGG - chr6_3:84778591-84778610 None:intergenic 25.0%
!!! TTTTTGAGAAGAAAAGATAG+TGG - chr6_3:84778592-84778611 None:intergenic 25.0%
! CAAAAAATTGGGTAAATTAG+AGG - chr6_3:84778747-84778766 None:intergenic 25.0%
! TTTCTCGACAACAAAAAATT+GGG - chr6_3:84778758-84778777 None:intergenic 25.0%
!! TTTTCTCGACAACAAAAAAT+TGG - chr6_3:84778759-84778778 None:intergenic 25.0%
! AAAGGGATCCTAAAAATTTA+TGG + chr6_3:84778932-84778951 Msa0962050:CDS 25.0%
! TCCTAAAAATTTATGGAGAA+AGG + chr6_3:84778939-84778958 Msa0962050:CDS 25.0%
!! TCCTTTCTCCATAAATTTTT+AGG - chr6_3:84778943-84778962 None:intergenic 25.0%
!! TGTTGAATTACTTCAGTTTT+TGG - chr6_3:84779079-84779098 None:intergenic 25.0%
!! CATAGAGAAACATTCATTTT+GGG + chr6_3:84779114-84779133 Msa0962050:CDS 25.0%
!! ATAGAGAAACATTCATTTTG+GGG + chr6_3:84779115-84779134 Msa0962050:CDS 25.0%
! ACAACAATTCAAATTGTGAT+TGG + chr6_3:84779157-84779176 Msa0962050:CDS 25.0%
!!! TGCTTCATTTTCATTTTTTG+CGG - chr6_3:84779313-84779332 None:intergenic 25.0%
!!! ATTCTAGAGATTGATTTGAA+GGG + chr6_3:84778218-84778237 Msa0962050:CDS 25.0%
! TAGACCAAAAAAATTATAGG+TGG + chr6_3:84778382-84778401 Msa0962050:intron 25.0%
! AGACCAAAAAAATTATAGGT+GGG + chr6_3:84778383-84778402 Msa0962050:intron 25.0%
!!! TGGGGTTTTTTTTTTTTTTG+AGG + chr6_3:84778402-84778421 Msa0962050:intron 25.0%
!!! GGGGTTTTTTTTTTTTTTGA+GGG + chr6_3:84778403-84778422 Msa0962050:intron 25.0%
!!! TTTTGAGGGAAAATTATATG+TGG + chr6_3:84778417-84778436 Msa0962050:intron 25.0%
! TTTGAGGGAAAATTATATGT+GGG + chr6_3:84778418-84778437 Msa0962050:intron 25.0%
!! AGGATTTTATGTTGAAAAAG+GGG - chr6_3:84778516-84778535 None:intergenic 25.0%
!!! TTTTGAGAAGAAAAGATAGT+GGG - chr6_3:84778591-84778610 None:intergenic 25.0%
!!! TTTTTGAGAAGAAAAGATAG+TGG - chr6_3:84778592-84778611 None:intergenic 25.0%
! CAAAAAATTGGGTAAATTAG+AGG - chr6_3:84778747-84778766 None:intergenic 25.0%
! TTTCTCGACAACAAAAAATT+GGG - chr6_3:84778758-84778777 None:intergenic 25.0%
!! TTTTCTCGACAACAAAAAAT+TGG - chr6_3:84778759-84778778 None:intergenic 25.0%
! AAAGGGATCCTAAAAATTTA+TGG + chr6_3:84778932-84778951 Msa0962050:CDS 25.0%
! TCCTAAAAATTTATGGAGAA+AGG + chr6_3:84778939-84778958 Msa0962050:CDS 25.0%
!! TCCTTTCTCCATAAATTTTT+AGG - chr6_3:84778943-84778962 None:intergenic 25.0%
!! TGTTGAATTACTTCAGTTTT+TGG - chr6_3:84779079-84779098 None:intergenic 25.0%
!! CATAGAGAAACATTCATTTT+GGG + chr6_3:84779114-84779133 Msa0962050:CDS 25.0%
!! ATAGAGAAACATTCATTTTG+GGG + chr6_3:84779115-84779134 Msa0962050:CDS 25.0%
! ACAACAATTCAAATTGTGAT+TGG + chr6_3:84779157-84779176 Msa0962050:CDS 25.0%
!!! TGCTTCATTTTCATTTTTTG+CGG - chr6_3:84779313-84779332 None:intergenic 25.0%
! ATTTTGAACCTTACTGCAAA+TGG + chr6_3:84778174-84778193 Msa0962050:CDS 30.0%
!! GATTCTAGAGATTGATTTGA+AGG + chr6_3:84778217-84778236 Msa0962050:CDS 30.0%
! AATATCTAAAATCAGAGGCA+TGG + chr6_3:84778331-84778350 Msa0962050:intron 30.0%
GACCAAAAAAATTATAGGTG+GGG + chr6_3:84778384-84778403 Msa0962050:intron 30.0%
!!! AACCCCACCTATAATTTTTT+TGG - chr6_3:84778389-84778408 None:intergenic 30.0%
TTTGGACAAAAAAAAACAGG+TGG + chr6_3:84778444-84778463 Msa0962050:intron 30.0%
TTTGAGAAGAAAAGATAGTG+GGG - chr6_3:84778590-84778609 None:intergenic 30.0%
TTTCAAAAAGGAGCAACTTA+AGG + chr6_3:84778895-84778914 Msa0962050:CDS 30.0%
AAGGTTCAAACTAACGATAA+AGG + chr6_3:84778914-84778933 Msa0962050:CDS 30.0%
AGGTTCAAACTAACGATAAA+GGG + chr6_3:84778915-84778934 Msa0962050:CDS 30.0%
TTGAAATCCTGATTTCTTTG+TGG - chr6_3:84778994-84779013 None:intergenic 30.0%
! ATTCAAGCAAAGTTTTCTCA+AGG + chr6_3:84779034-84779053 Msa0962050:CDS 30.0%
! TTCAAGCAAAGTTTTCTCAA+GGG + chr6_3:84779035-84779054 Msa0962050:CDS 30.0%
CCAAAATGAATGTTTCTCTA+TGG - chr6_3:84779116-84779135 None:intergenic 30.0%
! CCATAGAGAAACATTCATTT+TGG + chr6_3:84779113-84779132 Msa0962050:CDS 30.0%
! TAGAGAAACATTCATTTTGG+GGG + chr6_3:84779116-84779135 Msa0962050:CDS 30.0%
TCAAATTGTGATTGGAGTAA+TGG + chr6_3:84779165-84779184 Msa0962050:CDS 30.0%
AAACAACATCATGATGCATT+TGG + chr6_3:84779232-84779251 Msa0962050:CDS 30.0%
! ATTTTGAACCTTACTGCAAA+TGG + chr6_3:84778174-84778193 Msa0962050:CDS 30.0%
!! GATTCTAGAGATTGATTTGA+AGG + chr6_3:84778217-84778236 Msa0962050:CDS 30.0%
! AATATCTAAAATCAGAGGCA+TGG + chr6_3:84778331-84778350 Msa0962050:intron 30.0%
GACCAAAAAAATTATAGGTG+GGG + chr6_3:84778384-84778403 Msa0962050:intron 30.0%
!!! AACCCCACCTATAATTTTTT+TGG - chr6_3:84778389-84778408 None:intergenic 30.0%
TTTGGACAAAAAAAAACAGG+TGG + chr6_3:84778444-84778463 Msa0962050:intron 30.0%
TTTGAGAAGAAAAGATAGTG+GGG - chr6_3:84778590-84778609 None:intergenic 30.0%
TTTCAAAAAGGAGCAACTTA+AGG + chr6_3:84778895-84778914 Msa0962050:CDS 30.0%
AAGGTTCAAACTAACGATAA+AGG + chr6_3:84778914-84778933 Msa0962050:CDS 30.0%
AGGTTCAAACTAACGATAAA+GGG + chr6_3:84778915-84778934 Msa0962050:CDS 30.0%
TTGAAATCCTGATTTCTTTG+TGG - chr6_3:84778994-84779013 None:intergenic 30.0%
! ATTCAAGCAAAGTTTTCTCA+AGG + chr6_3:84779034-84779053 Msa0962050:CDS 30.0%
! TTCAAGCAAAGTTTTCTCAA+GGG + chr6_3:84779035-84779054 Msa0962050:CDS 30.0%
CCAAAATGAATGTTTCTCTA+TGG - chr6_3:84779116-84779135 None:intergenic 30.0%
! CCATAGAGAAACATTCATTT+TGG + chr6_3:84779113-84779132 Msa0962050:CDS 30.0%
! TAGAGAAACATTCATTTTGG+GGG + chr6_3:84779116-84779135 Msa0962050:CDS 30.0%
TCAAATTGTGATTGGAGTAA+TGG + chr6_3:84779165-84779184 Msa0962050:CDS 30.0%
AAACAACATCATGATGCATT+TGG + chr6_3:84779232-84779251 Msa0962050:CDS 30.0%
TTTCCATTGAATGTGATGAC+TGG - chr6_3:84778115-84778134 None:intergenic 35.0%
TTTGTGATCCATTTGCAGTA+AGG - chr6_3:84778185-84778204 None:intergenic 35.0%
TTACTGCAAATGGATCACAA+AGG + chr6_3:84778184-84778203 Msa0962050:CDS 35.0%
! TAAAATCAGAGGCATGGTTT+GGG + chr6_3:84778337-84778356 Msa0962050:intron 35.0%
! TAACTTGCCTAAAGGACTAA+AGG - chr6_3:84778364-84778383 None:intergenic 35.0%
!! TTTTGGTCTAACTTGCCTAA+AGG - chr6_3:84778372-84778391 None:intergenic 35.0%
!!! GATAGTGGGGCATTTTAATA+CGG - chr6_3:84778577-84778596 None:intergenic 35.0%
ATTTATGGAGAAAGGACTCT+TGG + chr6_3:84778947-84778966 Msa0962050:CDS 35.0%
TCCTGATTTCTTTGTGGAAA+CGG - chr6_3:84778988-84779007 None:intergenic 35.0%
TTTCTCTATGGTTGCATCTT+TGG - chr6_3:84779104-84779123 None:intergenic 35.0%
! AGAGAAACATTCATTTTGGG+GGG + chr6_3:84779117-84779136 Msa0962050:CDS 35.0%
TTTCCATTGAATGTGATGAC+TGG - chr6_3:84778115-84778134 None:intergenic 35.0%
TTTGTGATCCATTTGCAGTA+AGG - chr6_3:84778185-84778204 None:intergenic 35.0%
TTACTGCAAATGGATCACAA+AGG + chr6_3:84778184-84778203 Msa0962050:CDS 35.0%
! TAAAATCAGAGGCATGGTTT+GGG + chr6_3:84778337-84778356 Msa0962050:intron 35.0%
! TAACTTGCCTAAAGGACTAA+AGG - chr6_3:84778364-84778383 None:intergenic 35.0%
!! TTTTGGTCTAACTTGCCTAA+AGG - chr6_3:84778372-84778391 None:intergenic 35.0%
!!! GATAGTGGGGCATTTTAATA+CGG - chr6_3:84778577-84778596 None:intergenic 35.0%
ATTTATGGAGAAAGGACTCT+TGG + chr6_3:84778947-84778966 Msa0962050:CDS 35.0%
TCCTGATTTCTTTGTGGAAA+CGG - chr6_3:84778988-84779007 None:intergenic 35.0%
TTTCTCTATGGTTGCATCTT+TGG - chr6_3:84779104-84779123 None:intergenic 35.0%
! AGAGAAACATTCATTTTGGG+GGG + chr6_3:84779117-84779136 Msa0962050:CDS 35.0%
TGCAAATGGATCACAAAGGA+AGG + chr6_3:84778188-84778207 Msa0962050:CDS 40.0%
! CTAAAATCAGAGGCATGGTT+TGG + chr6_3:84778336-84778355 Msa0962050:intron 40.0%
! TTTGGGACCTTTAGTCCTTT+AGG + chr6_3:84778354-84778373 Msa0962050:intron 40.0%
TCAAGCGATTGTGATGTGAA+TGG + chr6_3:84779010-84779029 Msa0962050:CDS 40.0%
CAAGCGATTGTGATGTGAAT+GGG + chr6_3:84779011-84779030 Msa0962050:CDS 40.0%
TGTGATTGGAGTAATGGCTA+TGG + chr6_3:84779171-84779190 Msa0962050:CDS 40.0%
TAATGGCTATGGTTGCACTA+GGG + chr6_3:84779182-84779201 Msa0962050:CDS 40.0%
TGCAAATGGATCACAAAGGA+AGG + chr6_3:84778188-84778207 Msa0962050:CDS 40.0%
! CTAAAATCAGAGGCATGGTT+TGG + chr6_3:84778336-84778355 Msa0962050:intron 40.0%
! TTTGGGACCTTTAGTCCTTT+AGG + chr6_3:84778354-84778373 Msa0962050:intron 40.0%
TCAAGCGATTGTGATGTGAA+TGG + chr6_3:84779010-84779029 Msa0962050:CDS 40.0%
CAAGCGATTGTGATGTGAAT+GGG + chr6_3:84779011-84779030 Msa0962050:CDS 40.0%
TGTGATTGGAGTAATGGCTA+TGG + chr6_3:84779171-84779190 Msa0962050:CDS 40.0%
TAATGGCTATGGTTGCACTA+GGG + chr6_3:84779182-84779201 Msa0962050:CDS 40.0%
CCATTGAATGTGATGACTGG+TGG - chr6_3:84778112-84778131 None:intergenic 45.0%
CCACCAGTCATCACATTCAA+TGG + chr6_3:84778109-84778128 Msa0962050:exon 45.0%
GCTAGTAGCTTCAGCAACTT+TGG - chr6_3:84778138-84778157 None:intergenic 45.0%
GCCGTTTCCACAAAGAAATC+AGG + chr6_3:84778984-84779003 Msa0962050:CDS 45.0%
GTAATGGCTATGGTTGCACT+AGG + chr6_3:84779181-84779200 Msa0962050:CDS 45.0%
GTTTGATGAGAAAGTGAGCG+AGG + chr6_3:84779356-84779375 Msa0962050:three_prime_UTR 45.0%
CCATTGAATGTGATGACTGG+TGG - chr6_3:84778112-84778131 None:intergenic 45.0%
CCACCAGTCATCACATTCAA+TGG + chr6_3:84778109-84778128 Msa0962050:exon 45.0%
GCTAGTAGCTTCAGCAACTT+TGG - chr6_3:84778138-84778157 None:intergenic 45.0%
GCCGTTTCCACAAAGAAATC+AGG + chr6_3:84778984-84779003 Msa0962050:CDS 45.0%
GTAATGGCTATGGTTGCACT+AGG + chr6_3:84779181-84779200 Msa0962050:CDS 45.0%
GTTTGATGAGAAAGTGAGCG+AGG + chr6_3:84779356-84779375 Msa0962050:three_prime_UTR 45.0%
!! AAAATGTATATAATATATAA+AGG - chr6_3:84778254-84778273 None:intergenic 5.0%
!! AAAATGTATATAATATATAA+AGG - chr6_3:84778254-84778273 None:intergenic 5.0%
GGTTGCACTAGGGACTTATG+TGG + chr6_3:84779192-84779211 Msa0962050:CDS 50.0%
GGTTGCACTAGGGACTTATG+TGG + chr6_3:84779192-84779211 Msa0962050:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 84778057 84779509 84778057 ID=Msa0962050;Name=Msa0962050
chr6_3 mRNA 84778057 84779509 84778057 ID=Msa0962050-mRNA-1;Parent=Msa0962050;Name=Msa0962050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=71|1|1|1|1|1|2|230|165
chr6_3 exon 84778057 84778239 84778057 ID=Msa0962050-mRNA-1:exon:15188;Parent=Msa0962050-mRNA-1
chr6_3 exon 84778894 84779509 84778894 ID=Msa0962050-mRNA-1:exon:15189;Parent=Msa0962050-mRNA-1
chr6_3 five_prime_UTR 84778057 84778127 84778057 ID=Msa0962050-mRNA-1:five_prime_utr;Parent=Msa0962050-mRNA-1
chr6_3 CDS 84778128 84778239 84778128 ID=Msa0962050-mRNA-1:cds;Parent=Msa0962050-mRNA-1
chr6_3 CDS 84778894 84779279 84778894 ID=Msa0962050-mRNA-1:cds;Parent=Msa0962050-mRNA-1
chr6_3 three_prime_UTR 84779280 84779509 84779280 ID=Msa0962050-mRNA-1:three_prime_utr;Parent=Msa0962050-mRNA-1
Gene Sequence

>Msa0962050

ATGGAAACCAAAGTTGCTGAAGCTACTAGCAAAAGATTGTATGAAGATTTTGAACCTTACTGCAAATGGATCACAAAGGAAGGACAAAAGATTCTAGAGATTGATTTGAAGGGTTTCAAAAAGGAGCAACTTAAGGTTCAAACTAACGATAAAGGGATCCTAAAAATTTATGGAGAAAGGACTCTTGGTAGTAAGAAATGTAGCCGTTTCCACAAAGAAATCAGGATTTCAAGCGATTGTGATGTGAATGGGATTCAAGCAAAGTTTTCTCAAGGGCTTCTTTCTATCATAATGCCAAAAACTGAAGTAATTCAACATACCAAAGATGCAACCATAGAGAAACATTCATTTTGGGGGGTACATGAGAGAAAAATAACAACAATTCAAATTGTGATTGGAGTAATGGCTATGGTTGCACTAGGGACTTATGTGGCACGAGTTGTAGTAAATAAACAACATCATGATGCATTTGGCAATGTTAATGTTGTGAATGTTTAA
Protein sequence

>Msa0962050

METKVAEATSKRLYEDFEPYCKWITKEGQKILEIDLKGFKKEQLKVQTNDKGILKIYGERTLGSKKCSRFHKEIRISSDCDVNGIQAKFSQGLLSIIMPKTEVIQHTKDATIEKHSFWGVHERKITTIQIVIGVMAMVALGTYVARVVVNKQHHDAFGNVNVVNV*