AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0996680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996680 MtrunA17_Chr6g0481571 92.727 165 12 0 1 165 1 165 2.10e-112 316
Msa0996680 MtrunA17_Chr7g0253661 40.449 89 53 0 12 100 9 97 3.88e-20 82.8
Msa0996680 MtrunA17_Chr5g0440311 43.158 95 54 0 6 100 5 99 1.18e-18 80.1
Msa0996680 MtrunA17_Chr5g0440291 42.697 89 51 0 12 100 12 100 1.87e-18 79.3
Msa0996680 MtrunA17_Chr5g0440321 31.008 129 81 3 1 124 1 126 3.98e-14 68.2
Msa0996680 MtrunA17_Chr4g0060201 31.818 110 72 1 15 124 23 129 1.35e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996680 AT1G54400.1 43.750 96 53 1 7 101 6 101 9.79e-22 87.0
Msa0996680 AT2G27140.1 40.385 104 62 0 1 104 1 104 1.27e-20 85.1
Msa0996680 AT5G20970.1 40.000 115 66 2 12 124 8 121 7.11e-18 78.2
Msa0996680 AT5G04890.1 39.773 88 52 1 14 100 16 103 6.13e-15 71.2

Find 29 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAGAGAAACATTCATTT+TGG 0.198351 6_4:+75254717 Msa0996680:CDS
ATGAAAATGAAGCATAAATT+TGG 0.199243 6_4:+75254923 Msa0996680:three_prime_UTR
TTTCTCTATGGTTGCATCTT+TGG 0.207665 6_4:-75254705 None:intergenic
CCACCAGTCATCACATTTAA+TGG 0.209694 6_4:+75253752 Msa0996680:exon
CCAAAATGAATGTTTCTCTA+TGG 0.325882 6_4:-75254717 None:intergenic
AAAATCTTCATACAATCTTT+TGG 0.330843 6_4:-75253799 None:intergenic
TCCTGATTTCTTTGTGGAAA+CGG 0.353868 6_4:-75254589 None:intergenic
TTGAAATCCTGATTTCTTTG+TGG 0.360661 6_4:-75254595 None:intergenic
ACAACAATTCAAATTGTGAT+TGG 0.374136 6_4:+75254761 Msa0996680:CDS
AAGGTTCAAACTAACGATAA+AGG 0.388478 6_4:+75254518 Msa0996680:CDS
GCCGTTTCCACAAAGAAATC+AGG 0.392632 6_4:+75254588 Msa0996680:CDS
AAACAACATCATGATGCATT+TGG 0.402983 6_4:+75254836 Msa0996680:CDS
TCAAATTGTGATTGGAGTAA+TGG 0.419262 6_4:+75254769 Msa0996680:CDS
GGTAGTAGCTTCAGCAACTT+TGG 0.424641 6_4:-75253778 None:intergenic
TTTGTGATCCATTTGCAGTA+AGG 0.441165 6_4:-75253825 None:intergenic
CAAGAGATTGTGATGTGAAT+GGG 0.446532 6_4:+75254615 Msa0996680:CDS
AGGTTCAAACTAACGATAAA+GGG 0.452103 6_4:+75254519 Msa0996680:CDS
ATTTATGGAGAAAGGACTCT+TGG 0.477919 6_4:+75254551 Msa0996680:CDS
TCAAGAGATTGTGATGTGAA+TGG 0.485526 6_4:+75254614 Msa0996680:CDS
ATTCTAGAGATTGATTTGAA+AGG 0.547773 6_4:+75253861 Msa0996680:CDS
GTAATGGCTATGGTTGCACT+AGG 0.553548 6_4:+75254785 Msa0996680:CDS
TTTCCATTAAATGTGATGAC+TGG 0.556530 6_4:-75253755 None:intergenic
CCATTAAATGTGATGACTGG+TGG 0.572435 6_4:-75253752 None:intergenic
TGTGATTGGAGTAATGGCTA+TGG 0.602709 6_4:+75254775 Msa0996680:CDS
TGCAAATGGATCACAAAGGA+AGG 0.605441 6_4:+75253831 Msa0996680:CDS
GGTTGCACTAGGGACTTATG+TGG 0.633161 6_4:+75254796 Msa0996680:CDS
TAATGGCTATGGTTGCACTA+GGG 0.679191 6_4:+75254786 Msa0996680:CDS
GTTTGATGAGAAAGTGAGCG+AGG 0.718574 6_4:+75254960 Msa0996680:three_prime_UTR
TTACTGCAAATGGATCACAA+AGG 0.775712 6_4:+75253827 Msa0996680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAATTATAGT+TGG + chr6_4:75254017-75254036 Msa0996680:intron 10.0%
!! AAATTTATTAAAATCTGTAA+GGG - chr6_4:75254067-75254086 None:intergenic 10.0%
!! AAAATTTATTAAAATCTGTA+AGG - chr6_4:75254068-75254087 None:intergenic 10.0%
!! TATAATATTTAGTAAAATAG+AGG - chr6_4:75254130-75254149 None:intergenic 10.0%
!!! CTATTTTACTAAATATTATA+AGG + chr6_4:75254130-75254149 Msa0996680:intron 10.0%
!! CAAAAAAAAAAAATTATAGT+TGG + chr6_4:75254017-75254036 Msa0996680:intron 10.0%
!! AAATTTATTAAAATCTGTAA+GGG - chr6_4:75254067-75254086 None:intergenic 10.0%
!! AAAATTTATTAAAATCTGTA+AGG - chr6_4:75254068-75254087 None:intergenic 10.0%
!! TATAATATTTAGTAAAATAG+AGG - chr6_4:75254130-75254149 None:intergenic 10.0%
!!! CTATTTTACTAAATATTATA+AGG + chr6_4:75254130-75254149 Msa0996680:intron 10.0%
!!! TACGAAATTTATATTTTAAG+AGG + chr6_4:75253930-75253949 Msa0996680:intron 15.0%
!!! GAATTTGAAACATTTTTTTT+AGG + chr6_4:75254157-75254176 Msa0996680:intron 15.0%
!! AATTAGACAAAATAATTGTT+TGG - chr6_4:75254262-75254281 None:intergenic 15.0%
!!! TTTCTAACGTTTTTTATTTT+GGG - chr6_4:75254386-75254405 None:intergenic 15.0%
!!! ATTTCTAACGTTTTTTATTT+TGG - chr6_4:75254387-75254406 None:intergenic 15.0%
!! ACCATTTAATAAACAAATAT+TGG + chr6_4:75254437-75254456 Msa0996680:intron 15.0%
!! ACCAATATTTGTTTATTAAA+TGG - chr6_4:75254441-75254460 None:intergenic 15.0%
!!! TACGAAATTTATATTTTAAG+AGG + chr6_4:75253930-75253949 Msa0996680:intron 15.0%
!!! GAATTTGAAACATTTTTTTT+AGG + chr6_4:75254157-75254176 Msa0996680:intron 15.0%
!! AATTAGACAAAATAATTGTT+TGG - chr6_4:75254262-75254281 None:intergenic 15.0%
!!! TTTCTAACGTTTTTTATTTT+GGG - chr6_4:75254386-75254405 None:intergenic 15.0%
!!! ATTTCTAACGTTTTTTATTT+TGG - chr6_4:75254387-75254406 None:intergenic 15.0%
!! ACCATTTAATAAACAAATAT+TGG + chr6_4:75254437-75254456 Msa0996680:intron 15.0%
!! ACCAATATTTGTTTATTAAA+TGG - chr6_4:75254441-75254460 None:intergenic 15.0%
!!! AAAATCTTCATACAATCTTT+TGG - chr6_4:75253802-75253821 None:intergenic 20.0%
!! AAAATTATAGTTGGGTTATT+TGG + chr6_4:75254026-75254045 Msa0996680:intron 20.0%
!!! TAGTAAAATAGAGGATTTTA+TGG - chr6_4:75254121-75254140 None:intergenic 20.0%
!!! ATAAACAAATATTGGTCTAA+TGG + chr6_4:75254445-75254464 Msa0996680:intron 20.0%
!!! TATTTCTCTTGAATCATTTT+AGG + chr6_4:75254476-75254495 Msa0996680:intron 20.0%
!!! AATCATTTTAGGTTTCAAAA+AGG + chr6_4:75254487-75254506 Msa0996680:intron 20.0%
!! ATGAAAATGAAGCATAAATT+TGG + chr6_4:75254923-75254942 Msa0996680:three_prime_UTR 20.0%
!!! ATCTTTGAAGAAAAATAATG+TGG + chr6_4:75255020-75255039 Msa0996680:three_prime_UTR 20.0%
!! AGAAAAATAATGTGGAAAAA+AGG + chr6_4:75255028-75255047 Msa0996680:three_prime_UTR 20.0%
!! GAAAAATAATGTGGAAAAAA+GGG + chr6_4:75255029-75255048 Msa0996680:three_prime_UTR 20.0%
!!! AAAATCTTCATACAATCTTT+TGG - chr6_4:75253802-75253821 None:intergenic 20.0%
!! AAAATTATAGTTGGGTTATT+TGG + chr6_4:75254026-75254045 Msa0996680:intron 20.0%
!!! TAGTAAAATAGAGGATTTTA+TGG - chr6_4:75254121-75254140 None:intergenic 20.0%
!!! ATAAACAAATATTGGTCTAA+TGG + chr6_4:75254445-75254464 Msa0996680:intron 20.0%
!!! TATTTCTCTTGAATCATTTT+AGG + chr6_4:75254476-75254495 Msa0996680:intron 20.0%
!!! AATCATTTTAGGTTTCAAAA+AGG + chr6_4:75254487-75254506 Msa0996680:intron 20.0%
!! ATGAAAATGAAGCATAAATT+TGG + chr6_4:75254923-75254942 Msa0996680:three_prime_UTR 20.0%
!!! ATCTTTGAAGAAAAATAATG+TGG + chr6_4:75255020-75255039 Msa0996680:three_prime_UTR 20.0%
!! AGAAAAATAATGTGGAAAAA+AGG + chr6_4:75255028-75255047 Msa0996680:three_prime_UTR 20.0%
!! GAAAAATAATGTGGAAAAAA+GGG + chr6_4:75255029-75255048 Msa0996680:three_prime_UTR 20.0%
!!! ATTCTAGAGATTGATTTGAA+AGG + chr6_4:75253861-75253880 Msa0996680:CDS 25.0%
!! CTAACAAGAGTATATAATCA+AGG - chr6_4:75253897-75253916 None:intergenic 25.0%
!!! TTTTTGTCTAACTTGCATAA+AGG - chr6_4:75254003-75254022 None:intergenic 25.0%
!! AGGATTTTATGGTAAAAAAG+AGG - chr6_4:75254110-75254129 None:intergenic 25.0%
!!! TTTTGAGAAGAAAAGATAGT+GGG - chr6_4:75254197-75254216 None:intergenic 25.0%
!!! TTTTTGAGAAGAAAAGATAG+TGG - chr6_4:75254198-75254217 None:intergenic 25.0%
! CAAAAAATTGGGTAAATTAG+AGG - chr6_4:75254351-75254370 None:intergenic 25.0%
! TTTCTCGACAACAAAAAATT+GGG - chr6_4:75254362-75254381 None:intergenic 25.0%
!! TTTTCTCGACAACAAAAAAT+TGG - chr6_4:75254363-75254382 None:intergenic 25.0%
! AAAGGGATCCTAAAAATTTA+TGG + chr6_4:75254536-75254555 Msa0996680:CDS 25.0%
! TCCTAAAAATTTATGGAGAA+AGG + chr6_4:75254543-75254562 Msa0996680:CDS 25.0%
!! TCCTTTCTCCATAAATTTTT+AGG - chr6_4:75254547-75254566 None:intergenic 25.0%
!! TGTTGAATTACTTCAGTTTT+TGG - chr6_4:75254683-75254702 None:intergenic 25.0%
!! CATAGAGAAACATTCATTTT+GGG + chr6_4:75254718-75254737 Msa0996680:CDS 25.0%
!! ATAGAGAAACATTCATTTTG+GGG + chr6_4:75254719-75254738 Msa0996680:CDS 25.0%
! ACAACAATTCAAATTGTGAT+TGG + chr6_4:75254761-75254780 Msa0996680:CDS 25.0%
!!! TGCTTCATTTTCATTTTTTG+CGG - chr6_4:75254917-75254936 None:intergenic 25.0%
!!! ATTCTAGAGATTGATTTGAA+AGG + chr6_4:75253861-75253880 Msa0996680:CDS 25.0%
!! CTAACAAGAGTATATAATCA+AGG - chr6_4:75253897-75253916 None:intergenic 25.0%
!!! TTTTTGTCTAACTTGCATAA+AGG - chr6_4:75254003-75254022 None:intergenic 25.0%
!! AGGATTTTATGGTAAAAAAG+AGG - chr6_4:75254110-75254129 None:intergenic 25.0%
!!! TTTTGAGAAGAAAAGATAGT+GGG - chr6_4:75254197-75254216 None:intergenic 25.0%
!!! TTTTTGAGAAGAAAAGATAG+TGG - chr6_4:75254198-75254217 None:intergenic 25.0%
! CAAAAAATTGGGTAAATTAG+AGG - chr6_4:75254351-75254370 None:intergenic 25.0%
! TTTCTCGACAACAAAAAATT+GGG - chr6_4:75254362-75254381 None:intergenic 25.0%
!! TTTTCTCGACAACAAAAAAT+TGG - chr6_4:75254363-75254382 None:intergenic 25.0%
! AAAGGGATCCTAAAAATTTA+TGG + chr6_4:75254536-75254555 Msa0996680:CDS 25.0%
! TCCTAAAAATTTATGGAGAA+AGG + chr6_4:75254543-75254562 Msa0996680:CDS 25.0%
!! TCCTTTCTCCATAAATTTTT+AGG - chr6_4:75254547-75254566 None:intergenic 25.0%
!! TGTTGAATTACTTCAGTTTT+TGG - chr6_4:75254683-75254702 None:intergenic 25.0%
!! CATAGAGAAACATTCATTTT+GGG + chr6_4:75254718-75254737 Msa0996680:CDS 25.0%
!! ATAGAGAAACATTCATTTTG+GGG + chr6_4:75254719-75254738 Msa0996680:CDS 25.0%
! ACAACAATTCAAATTGTGAT+TGG + chr6_4:75254761-75254780 Msa0996680:CDS 25.0%
!!! TGCTTCATTTTCATTTTTTG+CGG - chr6_4:75254917-75254936 None:intergenic 25.0%
TTTCCATTAAATGTGATGAC+TGG - chr6_4:75253758-75253777 None:intergenic 30.0%
! ATTTTGAACCTTACTGCAAA+TGG + chr6_4:75253817-75253836 Msa0996680:CDS 30.0%
! ATACCATGTCTCTGATTTTA+GGG - chr6_4:75253967-75253986 None:intergenic 30.0%
! AATACCATGTCTCTGATTTT+AGG - chr6_4:75253968-75253987 None:intergenic 30.0%
TAAAATCAGAGACATGGTAT+TGG + chr6_4:75253967-75253986 Msa0996680:intron 30.0%
AAAATCAGAGACATGGTATT+GGG + chr6_4:75253968-75253987 Msa0996680:intron 30.0%
! TAACTTGCATAAAGGACTAA+AGG - chr6_4:75253995-75254014 None:intergenic 30.0%
TTGGGTTATTTGGACAAAAA+GGG + chr6_4:75254036-75254055 Msa0996680:intron 30.0%
TTTGAGAAGAAAAGATAGTG+GGG - chr6_4:75254196-75254215 None:intergenic 30.0%
TTTCAAAAAGGAGCAACTTA+AGG + chr6_4:75254499-75254518 Msa0996680:CDS 30.0%
AAGGTTCAAACTAACGATAA+AGG + chr6_4:75254518-75254537 Msa0996680:CDS 30.0%
AGGTTCAAACTAACGATAAA+GGG + chr6_4:75254519-75254538 Msa0996680:CDS 30.0%
TTGAAATCCTGATTTCTTTG+TGG - chr6_4:75254598-75254617 None:intergenic 30.0%
! ATTCAAGCAAAGTTTTCTCA+AGG + chr6_4:75254638-75254657 Msa0996680:CDS 30.0%
! TTCAAGCAAAGTTTTCTCAA+GGG + chr6_4:75254639-75254658 Msa0996680:CDS 30.0%
CCAAAATGAATGTTTCTCTA+TGG - chr6_4:75254720-75254739 None:intergenic 30.0%
! CCATAGAGAAACATTCATTT+TGG + chr6_4:75254717-75254736 Msa0996680:CDS 30.0%
! TAGAGAAACATTCATTTTGG+GGG + chr6_4:75254720-75254739 Msa0996680:CDS 30.0%
TCAAATTGTGATTGGAGTAA+TGG + chr6_4:75254769-75254788 Msa0996680:CDS 30.0%
AAACAACATCATGATGCATT+TGG + chr6_4:75254836-75254855 Msa0996680:CDS 30.0%
TTTCCATTAAATGTGATGAC+TGG - chr6_4:75253758-75253777 None:intergenic 30.0%
! ATTTTGAACCTTACTGCAAA+TGG + chr6_4:75253817-75253836 Msa0996680:CDS 30.0%
! ATACCATGTCTCTGATTTTA+GGG - chr6_4:75253967-75253986 None:intergenic 30.0%
! AATACCATGTCTCTGATTTT+AGG - chr6_4:75253968-75253987 None:intergenic 30.0%
TAAAATCAGAGACATGGTAT+TGG + chr6_4:75253967-75253986 Msa0996680:intron 30.0%
AAAATCAGAGACATGGTATT+GGG + chr6_4:75253968-75253987 Msa0996680:intron 30.0%
! TAACTTGCATAAAGGACTAA+AGG - chr6_4:75253995-75254014 None:intergenic 30.0%
TTGGGTTATTTGGACAAAAA+GGG + chr6_4:75254036-75254055 Msa0996680:intron 30.0%
TTTGAGAAGAAAAGATAGTG+GGG - chr6_4:75254196-75254215 None:intergenic 30.0%
TTTCAAAAAGGAGCAACTTA+AGG + chr6_4:75254499-75254518 Msa0996680:CDS 30.0%
AAGGTTCAAACTAACGATAA+AGG + chr6_4:75254518-75254537 Msa0996680:CDS 30.0%
AGGTTCAAACTAACGATAAA+GGG + chr6_4:75254519-75254538 Msa0996680:CDS 30.0%
TTGAAATCCTGATTTCTTTG+TGG - chr6_4:75254598-75254617 None:intergenic 30.0%
! ATTCAAGCAAAGTTTTCTCA+AGG + chr6_4:75254638-75254657 Msa0996680:CDS 30.0%
! TTCAAGCAAAGTTTTCTCAA+GGG + chr6_4:75254639-75254658 Msa0996680:CDS 30.0%
CCAAAATGAATGTTTCTCTA+TGG - chr6_4:75254720-75254739 None:intergenic 30.0%
! CCATAGAGAAACATTCATTT+TGG + chr6_4:75254717-75254736 Msa0996680:CDS 30.0%
! TAGAGAAACATTCATTTTGG+GGG + chr6_4:75254720-75254739 Msa0996680:CDS 30.0%
TCAAATTGTGATTGGAGTAA+TGG + chr6_4:75254769-75254788 Msa0996680:CDS 30.0%
AAACAACATCATGATGCATT+TGG + chr6_4:75254836-75254855 Msa0996680:CDS 30.0%
TTTGTGATCCATTTGCAGTA+AGG - chr6_4:75253828-75253847 None:intergenic 35.0%
TTACTGCAAATGGATCACAA+AGG + chr6_4:75253827-75253846 Msa0996680:CDS 35.0%
TATCCCTAAAATCAGAGACA+TGG + chr6_4:75253961-75253980 Msa0996680:intron 35.0%
GTTGGGTTATTTGGACAAAA+AGG + chr6_4:75254035-75254054 Msa0996680:intron 35.0%
TGGGTTATTTGGACAAAAAG+GGG + chr6_4:75254037-75254056 Msa0996680:intron 35.0%
!!! GATAGTGGGGCATTTTAATA+CGG - chr6_4:75254183-75254202 None:intergenic 35.0%
ATTTATGGAGAAAGGACTCT+TGG + chr6_4:75254551-75254570 Msa0996680:CDS 35.0%
TCCTGATTTCTTTGTGGAAA+CGG - chr6_4:75254592-75254611 None:intergenic 35.0%
TCAAGAGATTGTGATGTGAA+TGG + chr6_4:75254614-75254633 Msa0996680:CDS 35.0%
CAAGAGATTGTGATGTGAAT+GGG + chr6_4:75254615-75254634 Msa0996680:CDS 35.0%
TTTCTCTATGGTTGCATCTT+TGG - chr6_4:75254708-75254727 None:intergenic 35.0%
! AGAGAAACATTCATTTTGGG+GGG + chr6_4:75254721-75254740 Msa0996680:CDS 35.0%
TTTGTGATCCATTTGCAGTA+AGG - chr6_4:75253828-75253847 None:intergenic 35.0%
TTACTGCAAATGGATCACAA+AGG + chr6_4:75253827-75253846 Msa0996680:CDS 35.0%
TATCCCTAAAATCAGAGACA+TGG + chr6_4:75253961-75253980 Msa0996680:intron 35.0%
GTTGGGTTATTTGGACAAAA+AGG + chr6_4:75254035-75254054 Msa0996680:intron 35.0%
TGGGTTATTTGGACAAAAAG+GGG + chr6_4:75254037-75254056 Msa0996680:intron 35.0%
!!! GATAGTGGGGCATTTTAATA+CGG - chr6_4:75254183-75254202 None:intergenic 35.0%
ATTTATGGAGAAAGGACTCT+TGG + chr6_4:75254551-75254570 Msa0996680:CDS 35.0%
TCCTGATTTCTTTGTGGAAA+CGG - chr6_4:75254592-75254611 None:intergenic 35.0%
TCAAGAGATTGTGATGTGAA+TGG + chr6_4:75254614-75254633 Msa0996680:CDS 35.0%
CAAGAGATTGTGATGTGAAT+GGG + chr6_4:75254615-75254634 Msa0996680:CDS 35.0%
TTTCTCTATGGTTGCATCTT+TGG - chr6_4:75254708-75254727 None:intergenic 35.0%
! AGAGAAACATTCATTTTGGG+GGG + chr6_4:75254721-75254740 Msa0996680:CDS 35.0%
CCATTAAATGTGATGACTGG+TGG - chr6_4:75253755-75253774 None:intergenic 40.0%
CCACCAGTCATCACATTTAA+TGG + chr6_4:75253752-75253771 Msa0996680:exon 40.0%
TGCAAATGGATCACAAAGGA+AGG + chr6_4:75253831-75253850 Msa0996680:CDS 40.0%
GTTATTTGGACAAAAAGGGG+TGG + chr6_4:75254040-75254059 Msa0996680:intron 40.0%
TGTGATTGGAGTAATGGCTA+TGG + chr6_4:75254775-75254794 Msa0996680:CDS 40.0%
TAATGGCTATGGTTGCACTA+GGG + chr6_4:75254786-75254805 Msa0996680:CDS 40.0%
CCATTAAATGTGATGACTGG+TGG - chr6_4:75253755-75253774 None:intergenic 40.0%
CCACCAGTCATCACATTTAA+TGG + chr6_4:75253752-75253771 Msa0996680:exon 40.0%
TGCAAATGGATCACAAAGGA+AGG + chr6_4:75253831-75253850 Msa0996680:CDS 40.0%
GTTATTTGGACAAAAAGGGG+TGG + chr6_4:75254040-75254059 Msa0996680:intron 40.0%
TGTGATTGGAGTAATGGCTA+TGG + chr6_4:75254775-75254794 Msa0996680:CDS 40.0%
TAATGGCTATGGTTGCACTA+GGG + chr6_4:75254786-75254805 Msa0996680:CDS 40.0%
GGTAGTAGCTTCAGCAACTT+TGG - chr6_4:75253781-75253800 None:intergenic 45.0%
GCCGTTTCCACAAAGAAATC+AGG + chr6_4:75254588-75254607 Msa0996680:CDS 45.0%
GTAATGGCTATGGTTGCACT+AGG + chr6_4:75254785-75254804 Msa0996680:CDS 45.0%
GTTTGATGAGAAAGTGAGCG+AGG + chr6_4:75254960-75254979 Msa0996680:three_prime_UTR 45.0%
GGTAGTAGCTTCAGCAACTT+TGG - chr6_4:75253781-75253800 None:intergenic 45.0%
GCCGTTTCCACAAAGAAATC+AGG + chr6_4:75254588-75254607 Msa0996680:CDS 45.0%
GTAATGGCTATGGTTGCACT+AGG + chr6_4:75254785-75254804 Msa0996680:CDS 45.0%
GTTTGATGAGAAAGTGAGCG+AGG + chr6_4:75254960-75254979 Msa0996680:three_prime_UTR 45.0%
!! AAAAAAAAAAAATTATAGTT+GGG + chr6_4:75254018-75254037 Msa0996680:intron 5.0%
!!! TATTTTACTAAATATTATAA+GGG + chr6_4:75254131-75254150 Msa0996680:intron 5.0%
!! AAAAAAAAAAAATTATAGTT+GGG + chr6_4:75254018-75254037 Msa0996680:intron 5.0%
!!! TATTTTACTAAATATTATAA+GGG + chr6_4:75254131-75254150 Msa0996680:intron 5.0%
GGTTGCACTAGGGACTTATG+TGG + chr6_4:75254796-75254815 Msa0996680:CDS 50.0%
GGTTGCACTAGGGACTTATG+TGG + chr6_4:75254796-75254815 Msa0996680:CDS 50.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 75253699 75255107 75253699 ID=Msa0996680;Name=Msa0996680
chr6_4 mRNA 75253699 75255107 75253699 ID=Msa0996680-mRNA-1;Parent=Msa0996680;Name=Msa0996680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=72|1|1|1|1|1|2|224|165
chr6_4 exon 75253699 75253882 75253699 ID=Msa0996680-mRNA-1:exon:14048;Parent=Msa0996680-mRNA-1
chr6_4 exon 75254498 75255107 75254498 ID=Msa0996680-mRNA-1:exon:14049;Parent=Msa0996680-mRNA-1
chr6_4 five_prime_UTR 75253699 75253770 75253699 ID=Msa0996680-mRNA-1:five_prime_utr;Parent=Msa0996680-mRNA-1
chr6_4 CDS 75253771 75253882 75253771 ID=Msa0996680-mRNA-1:cds;Parent=Msa0996680-mRNA-1
chr6_4 CDS 75254498 75254883 75254498 ID=Msa0996680-mRNA-1:cds;Parent=Msa0996680-mRNA-1
chr6_4 three_prime_UTR 75254884 75255107 75254884 ID=Msa0996680-mRNA-1:three_prime_utr;Parent=Msa0996680-mRNA-1
Gene Sequence

>Msa0996680

ATGGAAACCAAAGTTGCTGAAGCTACTACCAAAAGATTGTATGAAGATTTTGAACCTTACTGCAAATGGATCACAAAGGAAGGACAGAAGATTCTAGAGATTGATTTGAAAGGTTTCAAAAAGGAGCAACTTAAGGTTCAAACTAACGATAAAGGGATCCTAAAAATTTATGGAGAAAGGACTCTTGGTAGTAAGAAATGTAGCCGTTTCCACAAAGAAATCAGGATTTCAAGAGATTGTGATGTGAATGGGATTCAAGCAAAGTTTTCTCAAGGGCTTCTTTCTATCATAATGCCAAAAACTGAAGTAATTCAACATACCAAAGATGCAACCATAGAGAAACATTCATTTTGGGGGGTACATGAGAGAAAAATAACAACAATTCAAATTGTGATTGGAGTAATGGCTATGGTTGCACTAGGGACTTATGTGGCACGAGTTGTAGTAAATAAACAACATCATGATGCATTTGGCAATGTTAATGTTGTGAATGTTTAA
Protein sequence

>Msa0996680

METKVAEATTKRLYEDFEPYCKWITKEGQKILEIDLKGFKKEQLKVQTNDKGILKIYGERTLGSKKCSRFHKEIRISRDCDVNGIQAKFSQGLLSIIMPKTEVIQHTKDATIEKHSFWGVHERKITTIQIVIGVMAMVALGTYVARVVVNKQHHDAFGNVNVVNV*