Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963580 | XP_024641124.2 | 58.885 | 287 | 98 | 4 | 1 | 281 | 1 | 273 | 3.82e-107 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963580 | sp|Q8VYG0|LRL13_ARATH | 33.163 | 196 | 116 | 10 | 56 | 249 | 42 | 224 | 9.93e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0963580 | Msa0998300 | 0.888404 | 6.085106e-73 | -8.615850e-47 |
| Msa0963580 | Msa1279860 | 0.810410 | 1.168561e-50 | -8.615850e-47 |
| Msa0963580 | Msa1279870 | 0.806977 | 6.329167e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963580 | MtrunA17_Chr6g0467631 | 58.885 | 287 | 98 | 4 | 1 | 281 | 1 | 273 | 4.99e-110 | 333 |
| Msa0963580 | MtrunA17_Chr6g0483931 | 56.552 | 290 | 106 | 8 | 1 | 279 | 1 | 281 | 8.06e-98 | 301 |
| Msa0963580 | MtrunA17_Chr6g0484061 | 57.092 | 282 | 98 | 6 | 7 | 285 | 1 | 262 | 3.25e-97 | 286 |
| Msa0963580 | MtrunA17_Chr6g0484051 | 53.992 | 263 | 103 | 6 | 26 | 281 | 23 | 274 | 2.54e-87 | 273 |
| Msa0963580 | MtrunA17_Chr6g0483821 | 53.559 | 295 | 118 | 9 | 1 | 285 | 1 | 286 | 5.06e-80 | 254 |
| Msa0963580 | MtrunA17_Chr6g0483901 | 53.942 | 241 | 91 | 6 | 1 | 235 | 1 | 227 | 1.65e-78 | 239 |
| Msa0963580 | MtrunA17_Chr8g0391231 | 32.031 | 256 | 144 | 11 | 36 | 279 | 19 | 256 | 6.07e-27 | 110 |
| Msa0963580 | MtrunA17_Chr6g0467591 | 55.556 | 90 | 29 | 2 | 1 | 90 | 20 | 98 | 2.47e-26 | 99.8 |
| Msa0963580 | MtrunA17_Chr6g0484081 | 51.613 | 93 | 38 | 3 | 38 | 125 | 25 | 115 | 2.24e-23 | 92.4 |
| Msa0963580 | MtrunA17_Chr8g0376061 | 35.776 | 232 | 128 | 14 | 44 | 269 | 27 | 243 | 8.07e-22 | 95.5 |
| Msa0963580 | MtrunA17_Chr7g0251011 | 28.049 | 246 | 152 | 9 | 47 | 282 | 30 | 260 | 4.28e-18 | 82.4 |
| Msa0963580 | MtrunA17_Chr7g0251131 | 28.111 | 217 | 134 | 7 | 47 | 255 | 27 | 229 | 9.10e-18 | 80.9 |
| Msa0963580 | MtrunA17_Chr6g0467601 | 61.017 | 59 | 23 | 0 | 212 | 270 | 2 | 60 | 5.64e-17 | 80.9 |
| Msa0963580 | MtrunA17_Chr6g0483851 | 29.365 | 252 | 138 | 14 | 36 | 267 | 31 | 262 | 7.68e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963580 | AT1G66940.2 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 2.39e-16 | 78.2 |
| Msa0963580 | AT1G66940.3 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 2.39e-16 | 78.2 |
| Msa0963580 | AT1G66940.1 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 4.16e-16 | 77.8 |
| Msa0963580 | AT1G66940.4 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 5.78e-16 | 77.4 |
| Msa0963580 | AT5G38210.1 | 33.163 | 196 | 116 | 10 | 56 | 249 | 42 | 224 | 1.01e-15 | 77.8 |
| Msa0963580 | AT1G66880.1 | 30.928 | 194 | 120 | 6 | 53 | 245 | 21 | 201 | 1.04e-13 | 72.0 |
| Msa0963580 | AT1G66880.1 | 27.919 | 197 | 121 | 7 | 56 | 248 | 416 | 595 | 4.99e-11 | 63.9 |
| Msa0963580 | AT1G67000.1 | 29.032 | 217 | 136 | 9 | 56 | 270 | 38 | 238 | 7.13e-13 | 69.3 |
| Msa0963580 | AT5G38250.1 | 30.093 | 216 | 124 | 10 | 36 | 245 | 29 | 223 | 7.98e-13 | 68.9 |
| Msa0963580 | AT1G66930.2 | 27.488 | 211 | 136 | 8 | 36 | 245 | 20 | 214 | 3.67e-11 | 63.9 |
| Msa0963580 | AT1G66880.2 | 27.189 | 217 | 134 | 8 | 36 | 248 | 20 | 216 | 4.29e-11 | 63.9 |
| Msa0963580 | AT1G66920.2 | 28.796 | 191 | 119 | 11 | 53 | 240 | 34 | 210 | 6.58e-11 | 63.2 |
| Msa0963580 | AT1G66920.3 | 28.866 | 194 | 121 | 11 | 53 | 243 | 34 | 213 | 7.01e-11 | 63.2 |
| Msa0963580 | AT1G66920.1 | 28.866 | 194 | 121 | 11 | 53 | 243 | 34 | 213 | 7.64e-11 | 63.2 |
| Msa0963580 | AT5G38240.1 | 30.055 | 183 | 113 | 6 | 56 | 235 | 41 | 211 | 9.12e-11 | 62.8 |
| Msa0963580 | AT5G38240.2 | 30.055 | 183 | 113 | 6 | 56 | 235 | 41 | 211 | 9.35e-11 | 62.8 |
Find 39 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACATCTCTTTCTTCT+TGG | 0.211325 | 6_3:-88167132 | Msa0963580:CDS |
| AATCCTTCTTTCGGTCATTA+TGG | 0.219325 | 6_3:-88166648 | Msa0963580:CDS |
| GAATAATCATTAACTGATTT+AGG | 0.227862 | 6_3:+88167047 | None:intergenic |
| CCAACGTCTCTTATCCATTC+TGG | 0.228010 | 6_3:-88166980 | Msa0963580:CDS |
| TGAAAATTGTTTAAATTGTT+TGG | 0.240793 | 6_3:-88166463 | Msa0963580:CDS |
| TTTGAGCGTGGTGAACTTAT+AGG | 0.268686 | 6_3:-88166525 | Msa0963580:CDS |
| TCAAAATAATCATCCTTTAG+AGG | 0.312339 | 6_3:+88166543 | None:intergenic |
| TCTCCGGCGCCGCAGTAAAA+AGG | 0.312544 | 6_3:+88166945 | None:intergenic |
| GAAAATTGTTTAAATTGTTT+GGG | 0.344560 | 6_3:-88166462 | Msa0963580:CDS |
| TGTTGTCTTTGTGACAATTA+AGG | 0.350183 | 6_3:+88166913 | None:intergenic |
| GTCTGTTCTTCGAAGTTTGA+TGG | 0.357477 | 6_3:+88166827 | None:intergenic |
| GGTTCCGACAATCCTTCTTT+CGG | 0.398025 | 6_3:-88166657 | Msa0963580:CDS |
| TTCTTACATGACTTCAAAGT+TGG | 0.401691 | 6_3:+88166597 | None:intergenic |
| CAACGTCTCTTATCCATTCT+GGG | 0.431131 | 6_3:-88166979 | Msa0963580:CDS |
| GAATAATCAATAGATCCATT+TGG | 0.447236 | 6_3:+88166369 | None:intergenic |
| TACTATGATAATTGTCCAAA+TGG | 0.450406 | 6_3:-88166384 | Msa0963580:CDS |
| ATGTAATGTTGATGAGTATA+GGG | 0.466492 | 6_3:+88167150 | None:intergenic |
| GAACCACATAGAGAGTTTGC+AGG | 0.507084 | 6_3:+88166675 | None:intergenic |
| TTAAATTGTTTGGGAAGTGA+AGG | 0.515345 | 6_3:-88166453 | Msa0963580:CDS |
| AGGAGGATATATTCCTCTAA+AGG | 0.526020 | 6_3:-88166556 | Msa0963580:CDS |
| AATTGTTTGGGAAGTGAAGG+AGG | 0.534332 | 6_3:-88166450 | Msa0963580:CDS |
| TAAGAAACATATCAAAGTGC+CGG | 0.550282 | 6_3:-88166580 | Msa0963580:CDS |
| ATGACCGAAAGAAGGATTGT+CGG | 0.551363 | 6_3:+88166653 | None:intergenic |
| CATATCAAAGTGCCGGTAGG+AGG | 0.556064 | 6_3:-88166573 | Msa0963580:CDS |
| ACTGATTTAGGTTGTTGTAG+AGG | 0.558879 | 6_3:+88167059 | None:intergenic |
| TTACCTGCAAACTCTCTATG+TGG | 0.563491 | 6_3:-88166678 | Msa0963580:CDS |
| TCGCCATAATGACCGAAAGA+AGG | 0.563952 | 6_3:+88166645 | None:intergenic |
| TATGTAATGTTGATGAGTAT+AGG | 0.581056 | 6_3:+88167149 | None:intergenic |
| AGAGGAATATATCCTCCTAC+CGG | 0.599709 | 6_3:+88166561 | None:intergenic |
| GATTTAGGTTGTTGTAGAGG+TGG | 0.604296 | 6_3:+88167062 | None:intergenic |
| GATGGATATTGAAACAGAGT+GGG | 0.618592 | 6_3:+88166756 | None:intergenic |
| AACGTCTCTTATCCATTCTG+GGG | 0.641180 | 6_3:-88166978 | Msa0963580:CDS |
| TGATGGATATTGAAACAGAG+TGG | 0.643713 | 6_3:+88166755 | None:intergenic |
| AAACATATCAAAGTGCCGGT+AGG | 0.647018 | 6_3:-88166576 | Msa0963580:CDS |
| AGGTGGCTGAGACTGAGAGT+GGG | 0.648598 | 6_3:+88167079 | None:intergenic |
| GACTGAGAGTGGGATTGATG+TGG | 0.650903 | 6_3:+88167089 | None:intergenic |
| GAGGTGGCTGAGACTGAGAG+TGG | 0.673258 | 6_3:+88167078 | None:intergenic |
| CCAGAATGGATAAGAGACGT+TGG | 0.682642 | 6_3:+88166980 | None:intergenic |
| GTGATGAGAAGAACAGTGTG+CGG | 0.778349 | 6_3:+88166347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTATCAAAAAATTG+AGG | + | chr6_3:88166695-88166714 | None:intergenic | 15.0% |
| !! | TGAAAATTGTTTAAATTGTT+TGG | - | chr6_3:88167012-88167031 | Msa0963580:CDS | 15.0% |
| !! | GAAAATTGTTTAAATTGTTT+GGG | - | chr6_3:88167013-88167032 | Msa0963580:CDS | 15.0% |
| !! | AAATATGTATCAAAAAATTG+AGG | + | chr6_3:88166695-88166714 | None:intergenic | 15.0% |
| !! | TGAAAATTGTTTAAATTGTT+TGG | - | chr6_3:88167012-88167031 | Msa0963580:CDS | 15.0% |
| !! | GAAAATTGTTTAAATTGTTT+GGG | - | chr6_3:88167013-88167032 | Msa0963580:CDS | 15.0% |
| !!! | GAATAATCATTAACTGATTT+AGG | + | chr6_3:88166431-88166450 | None:intergenic | 20.0% |
| !!! | GAATAATCATTAACTGATTT+AGG | + | chr6_3:88166431-88166450 | None:intergenic | 20.0% |
| !! | ATGTAATGTTGATGAGTATA+GGG | + | chr6_3:88166328-88166347 | None:intergenic | 25.0% |
| !! | TATGTAATGTTGATGAGTAT+AGG | + | chr6_3:88166329-88166348 | None:intergenic | 25.0% |
| !!! | GTTTTTGATGTTTTTACAAG+TGG | + | chr6_3:88166453-88166472 | None:intergenic | 25.0% |
| !! | AAGTACTATGAAATTTTGTG+AGG | + | chr6_3:88166606-88166625 | None:intergenic | 25.0% |
| ! | TCAAAATAATCATCCTTTAG+AGG | + | chr6_3:88166935-88166954 | None:intergenic | 25.0% |
| ! | TACTATGATAATTGTCCAAA+TGG | - | chr6_3:88167091-88167110 | Msa0963580:CDS | 25.0% |
| ! | GAATAATCAATAGATCCATT+TGG | + | chr6_3:88167109-88167128 | None:intergenic | 25.0% |
| !! | ATGTAATGTTGATGAGTATA+GGG | + | chr6_3:88166328-88166347 | None:intergenic | 25.0% |
| !! | TATGTAATGTTGATGAGTAT+AGG | + | chr6_3:88166329-88166348 | None:intergenic | 25.0% |
| !!! | GTTTTTGATGTTTTTACAAG+TGG | + | chr6_3:88166453-88166472 | None:intergenic | 25.0% |
| !! | AAGTACTATGAAATTTTGTG+AGG | + | chr6_3:88166606-88166625 | None:intergenic | 25.0% |
| ! | TCAAAATAATCATCCTTTAG+AGG | + | chr6_3:88166935-88166954 | None:intergenic | 25.0% |
| ! | TACTATGATAATTGTCCAAA+TGG | - | chr6_3:88167091-88167110 | Msa0963580:CDS | 25.0% |
| ! | GAATAATCAATAGATCCATT+TGG | + | chr6_3:88167109-88167128 | None:intergenic | 25.0% |
| TACATACATCTCTTTCTTCT+TGG | - | chr6_3:88166343-88166362 | Msa0963580:CDS | 30.0% | |
| ATCAAAAACTCATACAACTG+TGG | - | chr6_3:88166464-88166483 | Msa0963580:CDS | 30.0% | |
| ! | CAAAAACTTCCTTTTTACTG+CGG | - | chr6_3:88166521-88166540 | Msa0963580:CDS | 30.0% |
| ATTAAGGTGAAAAAGATCTC+CGG | + | chr6_3:88166549-88166568 | None:intergenic | 30.0% | |
| TGTTGTCTTTGTGACAATTA+AGG | + | chr6_3:88166565-88166584 | None:intergenic | 30.0% | |
| !! | GAGAACAAAGATTTTTGGAA+AGG | + | chr6_3:88166673-88166692 | None:intergenic | 30.0% |
| ! | TTGAGGAGAACAAAGATTTT+TGG | + | chr6_3:88166678-88166697 | None:intergenic | 30.0% |
| AAAAACGTCAGCATATACTA+CGG | - | chr6_3:88166749-88166768 | Msa0963580:CDS | 30.0% | |
| ! | AGGTAAATTTTCAGAGAAAG+TGG | + | chr6_3:88166783-88166802 | None:intergenic | 30.0% |
| TTCTTACATGACTTCAAAGT+TGG | + | chr6_3:88166881-88166900 | None:intergenic | 30.0% | |
| TAAGAAACATATCAAAGTGC+CGG | - | chr6_3:88166895-88166914 | Msa0963580:CDS | 30.0% | |
| TTAAATTGTTTGGGAAGTGA+AGG | - | chr6_3:88167022-88167041 | Msa0963580:CDS | 30.0% | |
| TACATACATCTCTTTCTTCT+TGG | - | chr6_3:88166343-88166362 | Msa0963580:CDS | 30.0% | |
| ATCAAAAACTCATACAACTG+TGG | - | chr6_3:88166464-88166483 | Msa0963580:CDS | 30.0% | |
| ! | CAAAAACTTCCTTTTTACTG+CGG | - | chr6_3:88166521-88166540 | Msa0963580:CDS | 30.0% |
| ATTAAGGTGAAAAAGATCTC+CGG | + | chr6_3:88166549-88166568 | None:intergenic | 30.0% | |
| TGTTGTCTTTGTGACAATTA+AGG | + | chr6_3:88166565-88166584 | None:intergenic | 30.0% | |
| !! | GAGAACAAAGATTTTTGGAA+AGG | + | chr6_3:88166673-88166692 | None:intergenic | 30.0% |
| ! | TTGAGGAGAACAAAGATTTT+TGG | + | chr6_3:88166678-88166697 | None:intergenic | 30.0% |
| AAAAACGTCAGCATATACTA+CGG | - | chr6_3:88166749-88166768 | Msa0963580:CDS | 30.0% | |
| ! | AGGTAAATTTTCAGAGAAAG+TGG | + | chr6_3:88166783-88166802 | None:intergenic | 30.0% |
| TTCTTACATGACTTCAAAGT+TGG | + | chr6_3:88166881-88166900 | None:intergenic | 30.0% | |
| TAAGAAACATATCAAAGTGC+CGG | - | chr6_3:88166895-88166914 | Msa0963580:CDS | 30.0% | |
| TTAAATTGTTTGGGAAGTGA+AGG | - | chr6_3:88167022-88167041 | Msa0963580:CDS | 30.0% | |
| GGATTGATGTGGAAAAAAAG+TGG | + | chr6_3:88166378-88166397 | None:intergenic | 35.0% | |
| !! | ACTGATTTAGGTTGTTGTAG+AGG | + | chr6_3:88166419-88166438 | None:intergenic | 35.0% |
| GATGGATATTGAAACAGAGT+GGG | + | chr6_3:88166722-88166741 | None:intergenic | 35.0% | |
| ! | TGATGGATATTGAAACAGAG+TGG | + | chr6_3:88166723-88166742 | None:intergenic | 35.0% |
| AATCCTTCTTTCGGTCATTA+TGG | - | chr6_3:88166827-88166846 | Msa0963580:CDS | 35.0% | |
| AGGAGGATATATTCCTCTAA+AGG | - | chr6_3:88166919-88166938 | Msa0963580:CDS | 35.0% | |
| !!! | AAGGATGATTATTTTGAGCG+TGG | - | chr6_3:88166938-88166957 | Msa0963580:CDS | 35.0% |
| GGATTGATGTGGAAAAAAAG+TGG | + | chr6_3:88166378-88166397 | None:intergenic | 35.0% | |
| !! | ACTGATTTAGGTTGTTGTAG+AGG | + | chr6_3:88166419-88166438 | None:intergenic | 35.0% |
| GATGGATATTGAAACAGAGT+GGG | + | chr6_3:88166722-88166741 | None:intergenic | 35.0% | |
| ! | TGATGGATATTGAAACAGAG+TGG | + | chr6_3:88166723-88166742 | None:intergenic | 35.0% |
| AATCCTTCTTTCGGTCATTA+TGG | - | chr6_3:88166827-88166846 | Msa0963580:CDS | 35.0% | |
| AGGAGGATATATTCCTCTAA+AGG | - | chr6_3:88166919-88166938 | Msa0963580:CDS | 35.0% | |
| !!! | AAGGATGATTATTTTGAGCG+TGG | - | chr6_3:88166938-88166957 | Msa0963580:CDS | 35.0% |
| !! | GATTTAGGTTGTTGTAGAGG+TGG | + | chr6_3:88166416-88166435 | None:intergenic | 40.0% |
| CAACGTCTCTTATCCATTCT+GGG | - | chr6_3:88166496-88166515 | Msa0963580:CDS | 40.0% | |
| AACGTCTCTTATCCATTCTG+GGG | - | chr6_3:88166497-88166516 | Msa0963580:CDS | 40.0% | |
| GTCTGTTCTTCGAAGTTTGA+TGG | + | chr6_3:88166651-88166670 | None:intergenic | 40.0% | |
| ! | CTGACGTTTTTGACACTTGA+TGG | + | chr6_3:88166740-88166759 | None:intergenic | 40.0% |
| TTACCTGCAAACTCTCTATG+TGG | - | chr6_3:88166797-88166816 | Msa0963580:CDS | 40.0% | |
| ATGACCGAAAGAAGGATTGT+CGG | + | chr6_3:88166825-88166844 | None:intergenic | 40.0% | |
| !! | AAACATATCAAAGTGCCGGT+AGG | - | chr6_3:88166899-88166918 | Msa0963580:CDS | 40.0% |
| AGAGGAATATATCCTCCTAC+CGG | + | chr6_3:88166917-88166936 | None:intergenic | 40.0% | |
| TTTGAGCGTGGTGAACTTAT+AGG | - | chr6_3:88166950-88166969 | Msa0963580:CDS | 40.0% | |
| !!! | AGCTTTGAGTGAAGCTTTTG+AGG | - | chr6_3:88166973-88166992 | Msa0963580:CDS | 40.0% |
| AATTGTTTGGGAAGTGAAGG+AGG | - | chr6_3:88167025-88167044 | Msa0963580:CDS | 40.0% | |
| !! | GATTTAGGTTGTTGTAGAGG+TGG | + | chr6_3:88166416-88166435 | None:intergenic | 40.0% |
| CAACGTCTCTTATCCATTCT+GGG | - | chr6_3:88166496-88166515 | Msa0963580:CDS | 40.0% | |
| AACGTCTCTTATCCATTCTG+GGG | - | chr6_3:88166497-88166516 | Msa0963580:CDS | 40.0% | |
| GTCTGTTCTTCGAAGTTTGA+TGG | + | chr6_3:88166651-88166670 | None:intergenic | 40.0% | |
| ! | CTGACGTTTTTGACACTTGA+TGG | + | chr6_3:88166740-88166759 | None:intergenic | 40.0% |
| TTACCTGCAAACTCTCTATG+TGG | - | chr6_3:88166797-88166816 | Msa0963580:CDS | 40.0% | |
| ATGACCGAAAGAAGGATTGT+CGG | + | chr6_3:88166825-88166844 | None:intergenic | 40.0% | |
| !! | AAACATATCAAAGTGCCGGT+AGG | - | chr6_3:88166899-88166918 | Msa0963580:CDS | 40.0% |
| AGAGGAATATATCCTCCTAC+CGG | + | chr6_3:88166917-88166936 | None:intergenic | 40.0% | |
| TTTGAGCGTGGTGAACTTAT+AGG | - | chr6_3:88166950-88166969 | Msa0963580:CDS | 40.0% | |
| !!! | AGCTTTGAGTGAAGCTTTTG+AGG | - | chr6_3:88166973-88166992 | Msa0963580:CDS | 40.0% |
| AATTGTTTGGGAAGTGAAGG+AGG | - | chr6_3:88167025-88167044 | Msa0963580:CDS | 40.0% | |
| CCAGAATGGATAAGAGACGT+TGG | + | chr6_3:88166498-88166517 | None:intergenic | 45.0% | |
| CCAACGTCTCTTATCCATTC+TGG | - | chr6_3:88166495-88166514 | Msa0963580:CDS | 45.0% | |
| ! | GGAAGTTTTTGTCCCCAGAA+TGG | + | chr6_3:88166512-88166531 | None:intergenic | 45.0% |
| GAACCACATAGAGAGTTTGC+AGG | + | chr6_3:88166803-88166822 | None:intergenic | 45.0% | |
| GGTTCCGACAATCCTTCTTT+CGG | - | chr6_3:88166818-88166837 | Msa0963580:CDS | 45.0% | |
| TCGCCATAATGACCGAAAGA+AGG | + | chr6_3:88166833-88166852 | None:intergenic | 45.0% | |
| GTGATGAGAAGAACAGTGTG+CGG | + | chr6_3:88167131-88167150 | None:intergenic | 45.0% | |
| CCAGAATGGATAAGAGACGT+TGG | + | chr6_3:88166498-88166517 | None:intergenic | 45.0% | |
| CCAACGTCTCTTATCCATTC+TGG | - | chr6_3:88166495-88166514 | Msa0963580:CDS | 45.0% | |
| ! | GGAAGTTTTTGTCCCCAGAA+TGG | + | chr6_3:88166512-88166531 | None:intergenic | 45.0% |
| GAACCACATAGAGAGTTTGC+AGG | + | chr6_3:88166803-88166822 | None:intergenic | 45.0% | |
| GGTTCCGACAATCCTTCTTT+CGG | - | chr6_3:88166818-88166837 | Msa0963580:CDS | 45.0% | |
| TCGCCATAATGACCGAAAGA+AGG | + | chr6_3:88166833-88166852 | None:intergenic | 45.0% | |
| GTGATGAGAAGAACAGTGTG+CGG | + | chr6_3:88167131-88167150 | None:intergenic | 45.0% | |
| GACTGAGAGTGGGATTGATG+TGG | + | chr6_3:88166389-88166408 | None:intergenic | 50.0% | |
| !! | CATATCAAAGTGCCGGTAGG+AGG | - | chr6_3:88166902-88166921 | Msa0963580:CDS | 50.0% |
| GACTGAGAGTGGGATTGATG+TGG | + | chr6_3:88166389-88166408 | None:intergenic | 50.0% | |
| !! | CATATCAAAGTGCCGGTAGG+AGG | - | chr6_3:88166902-88166921 | Msa0963580:CDS | 50.0% |
| AGGTGGCTGAGACTGAGAGT+GGG | + | chr6_3:88166399-88166418 | None:intergenic | 55.0% | |
| ! | CTTCCTTTTTACTGCGGCGC+CGG | - | chr6_3:88166527-88166546 | Msa0963580:CDS | 55.0% |
| AGGTGGCTGAGACTGAGAGT+GGG | + | chr6_3:88166399-88166418 | None:intergenic | 55.0% | |
| ! | CTTCCTTTTTACTGCGGCGC+CGG | - | chr6_3:88166527-88166546 | Msa0963580:CDS | 55.0% |
| GAGGTGGCTGAGACTGAGAG+TGG | + | chr6_3:88166400-88166419 | None:intergenic | 60.0% | |
| TCTCCGGCGCCGCAGTAAAA+AGG | + | chr6_3:88166533-88166552 | None:intergenic | 60.0% | |
| GAGGTGGCTGAGACTGAGAG+TGG | + | chr6_3:88166400-88166419 | None:intergenic | 60.0% | |
| TCTCCGGCGCCGCAGTAAAA+AGG | + | chr6_3:88166533-88166552 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 88166311 | 88167186 | 88166311 | ID=Msa0963580;Name=Msa0963580 |
| chr6_3 | mRNA | 88166311 | 88167186 | 88166311 | ID=Msa0963580-mRNA-1;Parent=Msa0963580;Name=Msa0963580-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|291 |
| chr6_3 | exon | 88166311 | 88167186 | 88166311 | ID=Msa0963580-mRNA-1:exon:16022;Parent=Msa0963580-mRNA-1 |
| chr6_3 | CDS | 88166311 | 88167186 | 88166311 | ID=Msa0963580-mRNA-1:cds;Parent=Msa0963580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
