Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998300 | XP_024641124.2 | 58.885 | 287 | 98 | 4 | 1 | 281 | 1 | 273 | 3.01e-107 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998300 | sp|Q8VYG0|LRL13_ARATH | 33.163 | 196 | 116 | 10 | 56 | 249 | 42 | 224 | 9.05e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998300 | A0A396HDF1 | 58.885 | 287 | 98 | 4 | 1 | 281 | 1 | 273 | 1.94e-106 | 333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0963580 | Msa0998300 | 0.888404 | 6.085106e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998300 | MtrunA17_Chr6g0467631 | 58.885 | 287 | 98 | 4 | 1 | 281 | 1 | 273 | 3.73e-110 | 333 |
| Msa0998300 | MtrunA17_Chr6g0483931 | 56.552 | 290 | 106 | 8 | 1 | 279 | 1 | 281 | 5.98e-98 | 302 |
| Msa0998300 | MtrunA17_Chr6g0484061 | 56.738 | 282 | 99 | 6 | 7 | 285 | 1 | 262 | 5.85e-96 | 283 |
| Msa0998300 | MtrunA17_Chr6g0484051 | 53.612 | 263 | 104 | 6 | 26 | 281 | 23 | 274 | 6.40e-86 | 270 |
| Msa0998300 | MtrunA17_Chr6g0483821 | 53.559 | 295 | 118 | 9 | 1 | 285 | 1 | 286 | 4.18e-80 | 255 |
| Msa0998300 | MtrunA17_Chr6g0483901 | 54.545 | 242 | 88 | 7 | 1 | 235 | 1 | 227 | 1.63e-78 | 239 |
| Msa0998300 | MtrunA17_Chr6g0467591 | 55.556 | 90 | 29 | 2 | 1 | 90 | 20 | 98 | 2.15e-26 | 99.8 |
| Msa0998300 | MtrunA17_Chr8g0391231 | 31.641 | 256 | 145 | 11 | 36 | 279 | 19 | 256 | 1.37e-25 | 106 |
| Msa0998300 | MtrunA17_Chr6g0484081 | 51.613 | 93 | 38 | 3 | 38 | 125 | 25 | 115 | 2.22e-23 | 92.4 |
| Msa0998300 | MtrunA17_Chr8g0376061 | 36.538 | 208 | 117 | 11 | 44 | 245 | 27 | 225 | 2.90e-21 | 93.6 |
| Msa0998300 | MtrunA17_Chr7g0251011 | 28.049 | 246 | 152 | 9 | 47 | 282 | 30 | 260 | 3.05e-18 | 82.8 |
| Msa0998300 | MtrunA17_Chr7g0251131 | 28.111 | 217 | 134 | 7 | 47 | 255 | 27 | 229 | 8.23e-18 | 81.3 |
| Msa0998300 | MtrunA17_Chr6g0467601 | 61.017 | 59 | 23 | 0 | 212 | 270 | 2 | 60 | 5.86e-17 | 80.5 |
| Msa0998300 | MtrunA17_Chr6g0483851 | 28.968 | 252 | 142 | 13 | 36 | 267 | 31 | 265 | 2.47e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998300 | AT1G66940.2 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 2.54e-16 | 78.2 |
| Msa0998300 | AT1G66940.3 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 2.54e-16 | 78.2 |
| Msa0998300 | AT1G66940.1 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 4.32e-16 | 77.8 |
| Msa0998300 | AT1G66940.4 | 31.937 | 191 | 118 | 7 | 56 | 245 | 37 | 216 | 5.78e-16 | 77.4 |
| Msa0998300 | AT5G38210.1 | 33.163 | 196 | 116 | 10 | 56 | 249 | 42 | 224 | 9.19e-16 | 77.8 |
| Msa0998300 | AT1G66880.1 | 31.282 | 195 | 118 | 7 | 53 | 245 | 21 | 201 | 1.15e-13 | 71.6 |
| Msa0998300 | AT1G66880.1 | 27.919 | 197 | 121 | 7 | 56 | 248 | 416 | 595 | 4.99e-11 | 63.9 |
| Msa0998300 | AT5G38250.1 | 30.093 | 216 | 124 | 10 | 36 | 245 | 29 | 223 | 8.43e-13 | 68.9 |
| Msa0998300 | AT1G67000.1 | 28.646 | 192 | 123 | 7 | 56 | 245 | 38 | 217 | 1.25e-12 | 68.6 |
| Msa0998300 | AT1G66930.2 | 27.488 | 211 | 136 | 8 | 36 | 245 | 20 | 214 | 3.38e-11 | 64.3 |
| Msa0998300 | AT1G66880.2 | 27.189 | 217 | 134 | 8 | 36 | 248 | 20 | 216 | 4.29e-11 | 63.9 |
| Msa0998300 | AT1G66920.2 | 28.866 | 194 | 121 | 11 | 53 | 243 | 34 | 213 | 5.43e-11 | 63.5 |
| Msa0998300 | AT1G66920.1 | 28.796 | 191 | 119 | 11 | 53 | 240 | 34 | 210 | 5.81e-11 | 63.2 |
| Msa0998300 | AT1G66920.3 | 28.866 | 194 | 121 | 11 | 53 | 243 | 34 | 213 | 6.63e-11 | 63.2 |
| Msa0998300 | AT5G38240.2 | 30.055 | 183 | 113 | 6 | 56 | 235 | 41 | 211 | 9.18e-11 | 62.8 |
| Msa0998300 | AT5G38240.1 | 30.055 | 183 | 113 | 6 | 56 | 235 | 41 | 211 | 9.29e-11 | 62.8 |
Find 38 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACATCTCTTTCTTCT+TGG | 0.211325 | 6_4:-79107639 | Msa0998300:CDS |
| AATCCTTCTTTCGGTCATTA+TGG | 0.219325 | 6_4:-79107155 | Msa0998300:CDS |
| GAATAATCATTAACTGATTT+AGG | 0.227862 | 6_4:+79107554 | None:intergenic |
| CCAACGTCTCTTATCCATTC+TGG | 0.228010 | 6_4:-79107487 | Msa0998300:CDS |
| TGAAAATTGTTTAAATTGTT+TGG | 0.240793 | 6_4:-79106970 | Msa0998300:CDS |
| TTTGAGCGTGGTGAACTTAT+AGG | 0.268686 | 6_4:-79107032 | Msa0998300:CDS |
| TCAAAATAATCATCCTTTAG+AGG | 0.312339 | 6_4:+79107050 | None:intergenic |
| TCTCCGGCGCCGCAGTAAAA+AGG | 0.312544 | 6_4:+79107452 | None:intergenic |
| TACTATGATAATTGTCAAAA+TGG | 0.326750 | 6_4:-79106891 | Msa0998300:CDS |
| GAAAATTGTTTAAATTGTTT+GGG | 0.344560 | 6_4:-79106969 | Msa0998300:CDS |
| TGTTGTCTTTGTGACAATTA+AGG | 0.350183 | 6_4:+79107420 | None:intergenic |
| GTCTGTTCTTCGAAGTTTGA+TGG | 0.357477 | 6_4:+79107334 | None:intergenic |
| GGTTCCGACAATCCTTCTTT+CGG | 0.398025 | 6_4:-79107164 | Msa0998300:CDS |
| TTCTTACATGACTTCAAAGT+TGG | 0.401691 | 6_4:+79107104 | None:intergenic |
| CAACGTCTCTTATCCATTCT+GGG | 0.431131 | 6_4:-79107486 | Msa0998300:CDS |
| ATGTAATGTTGATGAGTATA+GGG | 0.466492 | 6_4:+79107657 | None:intergenic |
| GAACCACATAGAGAGTTTGC+AGG | 0.507084 | 6_4:+79107182 | None:intergenic |
| TTAAATTGTTTGGGAAGTGA+AGG | 0.515345 | 6_4:-79106960 | Msa0998300:CDS |
| AGGAGGATATATTCCTCTAA+AGG | 0.526020 | 6_4:-79107063 | Msa0998300:CDS |
| AATTGTTTGGGAAGTGAAGG+AGG | 0.534332 | 6_4:-79106957 | Msa0998300:CDS |
| TAAGAAACATATCAAAGTGC+CGG | 0.550282 | 6_4:-79107087 | Msa0998300:CDS |
| ATGACCGAAAGAAGGATTGT+CGG | 0.551363 | 6_4:+79107160 | None:intergenic |
| CATATCAAAGTGCCGGTAGG+AGG | 0.556064 | 6_4:-79107080 | Msa0998300:CDS |
| ACTGATTTAGGTTGTTGTAG+AGG | 0.558879 | 6_4:+79107566 | None:intergenic |
| TTACCTGCAAACTCTCTATG+TGG | 0.563491 | 6_4:-79107185 | Msa0998300:CDS |
| TCGCCATAATGACCGAAAGA+AGG | 0.563952 | 6_4:+79107152 | None:intergenic |
| TATGTAATGTTGATGAGTAT+AGG | 0.581056 | 6_4:+79107656 | None:intergenic |
| AGAGGAATATATCCTCCTAC+CGG | 0.599709 | 6_4:+79107068 | None:intergenic |
| GATTTAGGTTGTTGTAGAGG+TGG | 0.604296 | 6_4:+79107569 | None:intergenic |
| GATGGATATTGAAACAGAGT+GGG | 0.618592 | 6_4:+79107263 | None:intergenic |
| AACGTCTCTTATCCATTCTG+GGG | 0.641180 | 6_4:-79107485 | Msa0998300:CDS |
| TGATGGATATTGAAACAGAG+TGG | 0.643713 | 6_4:+79107262 | None:intergenic |
| AAACATATCAAAGTGCCGGT+AGG | 0.647018 | 6_4:-79107083 | Msa0998300:CDS |
| AGGTGGCTGAGACTGAGAGT+GGG | 0.648598 | 6_4:+79107586 | None:intergenic |
| GACTGAGAGTGGGATTGATG+TGG | 0.650903 | 6_4:+79107596 | None:intergenic |
| GAGGTGGCTGAGACTGAGAG+TGG | 0.673258 | 6_4:+79107585 | None:intergenic |
| CCAGAATGGATAAGAGACGT+TGG | 0.682642 | 6_4:+79107487 | None:intergenic |
| GTGATGAGAAGAACAGTGTG+CGG | 0.778349 | 6_4:+79106854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTATCAAAAAATTG+AGG | + | chr6_4:79107202-79107221 | None:intergenic | 15.0% |
| !! | TGAAAATTGTTTAAATTGTT+TGG | - | chr6_4:79107519-79107538 | Msa0998300:CDS | 15.0% |
| !! | GAAAATTGTTTAAATTGTTT+GGG | - | chr6_4:79107520-79107539 | Msa0998300:CDS | 15.0% |
| !! | AAATATGTATCAAAAAATTG+AGG | + | chr6_4:79107202-79107221 | None:intergenic | 15.0% |
| !! | TGAAAATTGTTTAAATTGTT+TGG | - | chr6_4:79107519-79107538 | Msa0998300:CDS | 15.0% |
| !! | GAAAATTGTTTAAATTGTTT+GGG | - | chr6_4:79107520-79107539 | Msa0998300:CDS | 15.0% |
| !!! | GAATAATCATTAACTGATTT+AGG | + | chr6_4:79106938-79106957 | None:intergenic | 20.0% |
| !! | TACTATGATAATTGTCAAAA+TGG | - | chr6_4:79107598-79107617 | Msa0998300:CDS | 20.0% |
| !!! | GAATAATCATTAACTGATTT+AGG | + | chr6_4:79106938-79106957 | None:intergenic | 20.0% |
| !! | TACTATGATAATTGTCAAAA+TGG | - | chr6_4:79107598-79107617 | Msa0998300:CDS | 20.0% |
| !! | ATGTAATGTTGATGAGTATA+GGG | + | chr6_4:79106835-79106854 | None:intergenic | 25.0% |
| !! | TATGTAATGTTGATGAGTAT+AGG | + | chr6_4:79106836-79106855 | None:intergenic | 25.0% |
| !!! | GTTTTTGATGTTTTTACAAG+TGG | + | chr6_4:79106960-79106979 | None:intergenic | 25.0% |
| !! | AAGTACTATGAAATTTTGTG+AGG | + | chr6_4:79107113-79107132 | None:intergenic | 25.0% |
| ! | TCAAAATAATCATCCTTTAG+AGG | + | chr6_4:79107442-79107461 | None:intergenic | 25.0% |
| !! | ATGTAATGTTGATGAGTATA+GGG | + | chr6_4:79106835-79106854 | None:intergenic | 25.0% |
| !! | TATGTAATGTTGATGAGTAT+AGG | + | chr6_4:79106836-79106855 | None:intergenic | 25.0% |
| !!! | GTTTTTGATGTTTTTACAAG+TGG | + | chr6_4:79106960-79106979 | None:intergenic | 25.0% |
| !! | AAGTACTATGAAATTTTGTG+AGG | + | chr6_4:79107113-79107132 | None:intergenic | 25.0% |
| ! | TCAAAATAATCATCCTTTAG+AGG | + | chr6_4:79107442-79107461 | None:intergenic | 25.0% |
| TACATACATCTCTTTCTTCT+TGG | - | chr6_4:79106850-79106869 | Msa0998300:CDS | 30.0% | |
| ATCAAAAACTCATACAACTG+TGG | - | chr6_4:79106971-79106990 | Msa0998300:CDS | 30.0% | |
| ! | CAAAAACTTCCTTTTTACTG+CGG | - | chr6_4:79107028-79107047 | Msa0998300:CDS | 30.0% |
| ATTAAGGTGAAAAAGATCTC+CGG | + | chr6_4:79107056-79107075 | None:intergenic | 30.0% | |
| TGTTGTCTTTGTGACAATTA+AGG | + | chr6_4:79107072-79107091 | None:intergenic | 30.0% | |
| !! | GAGAACAAAGATTTTTGGAA+AGG | + | chr6_4:79107180-79107199 | None:intergenic | 30.0% |
| ! | TTGAGGAGAACAAAGATTTT+TGG | + | chr6_4:79107185-79107204 | None:intergenic | 30.0% |
| AAAAACGTCAGCATATACTA+CGG | - | chr6_4:79107256-79107275 | Msa0998300:CDS | 30.0% | |
| ! | AGGTAAATTTTCAGAGAAAG+TGG | + | chr6_4:79107290-79107309 | None:intergenic | 30.0% |
| TTCTTACATGACTTCAAAGT+TGG | + | chr6_4:79107388-79107407 | None:intergenic | 30.0% | |
| TAAGAAACATATCAAAGTGC+CGG | - | chr6_4:79107402-79107421 | Msa0998300:CDS | 30.0% | |
| TTAAATTGTTTGGGAAGTGA+AGG | - | chr6_4:79107529-79107548 | Msa0998300:CDS | 30.0% | |
| TACATACATCTCTTTCTTCT+TGG | - | chr6_4:79106850-79106869 | Msa0998300:CDS | 30.0% | |
| ATCAAAAACTCATACAACTG+TGG | - | chr6_4:79106971-79106990 | Msa0998300:CDS | 30.0% | |
| ! | CAAAAACTTCCTTTTTACTG+CGG | - | chr6_4:79107028-79107047 | Msa0998300:CDS | 30.0% |
| ATTAAGGTGAAAAAGATCTC+CGG | + | chr6_4:79107056-79107075 | None:intergenic | 30.0% | |
| TGTTGTCTTTGTGACAATTA+AGG | + | chr6_4:79107072-79107091 | None:intergenic | 30.0% | |
| !! | GAGAACAAAGATTTTTGGAA+AGG | + | chr6_4:79107180-79107199 | None:intergenic | 30.0% |
| ! | TTGAGGAGAACAAAGATTTT+TGG | + | chr6_4:79107185-79107204 | None:intergenic | 30.0% |
| AAAAACGTCAGCATATACTA+CGG | - | chr6_4:79107256-79107275 | Msa0998300:CDS | 30.0% | |
| ! | AGGTAAATTTTCAGAGAAAG+TGG | + | chr6_4:79107290-79107309 | None:intergenic | 30.0% |
| TTCTTACATGACTTCAAAGT+TGG | + | chr6_4:79107388-79107407 | None:intergenic | 30.0% | |
| TAAGAAACATATCAAAGTGC+CGG | - | chr6_4:79107402-79107421 | Msa0998300:CDS | 30.0% | |
| TTAAATTGTTTGGGAAGTGA+AGG | - | chr6_4:79107529-79107548 | Msa0998300:CDS | 30.0% | |
| GGATTGATGTGGAAAAAAAG+TGG | + | chr6_4:79106885-79106904 | None:intergenic | 35.0% | |
| !! | ACTGATTTAGGTTGTTGTAG+AGG | + | chr6_4:79106926-79106945 | None:intergenic | 35.0% |
| GATGGATATTGAAACAGAGT+GGG | + | chr6_4:79107229-79107248 | None:intergenic | 35.0% | |
| ! | TGATGGATATTGAAACAGAG+TGG | + | chr6_4:79107230-79107249 | None:intergenic | 35.0% |
| AATCCTTCTTTCGGTCATTA+TGG | - | chr6_4:79107334-79107353 | Msa0998300:CDS | 35.0% | |
| AGGAGGATATATTCCTCTAA+AGG | - | chr6_4:79107426-79107445 | Msa0998300:CDS | 35.0% | |
| !!! | AAGGATGATTATTTTGAGCG+TGG | - | chr6_4:79107445-79107464 | Msa0998300:CDS | 35.0% |
| GGATTGATGTGGAAAAAAAG+TGG | + | chr6_4:79106885-79106904 | None:intergenic | 35.0% | |
| !! | ACTGATTTAGGTTGTTGTAG+AGG | + | chr6_4:79106926-79106945 | None:intergenic | 35.0% |
| GATGGATATTGAAACAGAGT+GGG | + | chr6_4:79107229-79107248 | None:intergenic | 35.0% | |
| ! | TGATGGATATTGAAACAGAG+TGG | + | chr6_4:79107230-79107249 | None:intergenic | 35.0% |
| AATCCTTCTTTCGGTCATTA+TGG | - | chr6_4:79107334-79107353 | Msa0998300:CDS | 35.0% | |
| AGGAGGATATATTCCTCTAA+AGG | - | chr6_4:79107426-79107445 | Msa0998300:CDS | 35.0% | |
| !!! | AAGGATGATTATTTTGAGCG+TGG | - | chr6_4:79107445-79107464 | Msa0998300:CDS | 35.0% |
| !! | GATTTAGGTTGTTGTAGAGG+TGG | + | chr6_4:79106923-79106942 | None:intergenic | 40.0% |
| CAACGTCTCTTATCCATTCT+GGG | - | chr6_4:79107003-79107022 | Msa0998300:CDS | 40.0% | |
| AACGTCTCTTATCCATTCTG+GGG | - | chr6_4:79107004-79107023 | Msa0998300:CDS | 40.0% | |
| GTCTGTTCTTCGAAGTTTGA+TGG | + | chr6_4:79107158-79107177 | None:intergenic | 40.0% | |
| ! | CTGACGTTTTTGACACTTGA+TGG | + | chr6_4:79107247-79107266 | None:intergenic | 40.0% |
| TTACCTGCAAACTCTCTATG+TGG | - | chr6_4:79107304-79107323 | Msa0998300:CDS | 40.0% | |
| ATGACCGAAAGAAGGATTGT+CGG | + | chr6_4:79107332-79107351 | None:intergenic | 40.0% | |
| !! | AAACATATCAAAGTGCCGGT+AGG | - | chr6_4:79107406-79107425 | Msa0998300:CDS | 40.0% |
| AGAGGAATATATCCTCCTAC+CGG | + | chr6_4:79107424-79107443 | None:intergenic | 40.0% | |
| TTTGAGCGTGGTGAACTTAT+AGG | - | chr6_4:79107457-79107476 | Msa0998300:CDS | 40.0% | |
| !!! | AGCTTTGAGTGAAGCTTTTG+AGG | - | chr6_4:79107480-79107499 | Msa0998300:CDS | 40.0% |
| AATTGTTTGGGAAGTGAAGG+AGG | - | chr6_4:79107532-79107551 | Msa0998300:CDS | 40.0% | |
| !! | GATTTAGGTTGTTGTAGAGG+TGG | + | chr6_4:79106923-79106942 | None:intergenic | 40.0% |
| CAACGTCTCTTATCCATTCT+GGG | - | chr6_4:79107003-79107022 | Msa0998300:CDS | 40.0% | |
| AACGTCTCTTATCCATTCTG+GGG | - | chr6_4:79107004-79107023 | Msa0998300:CDS | 40.0% | |
| GTCTGTTCTTCGAAGTTTGA+TGG | + | chr6_4:79107158-79107177 | None:intergenic | 40.0% | |
| ! | CTGACGTTTTTGACACTTGA+TGG | + | chr6_4:79107247-79107266 | None:intergenic | 40.0% |
| TTACCTGCAAACTCTCTATG+TGG | - | chr6_4:79107304-79107323 | Msa0998300:CDS | 40.0% | |
| ATGACCGAAAGAAGGATTGT+CGG | + | chr6_4:79107332-79107351 | None:intergenic | 40.0% | |
| !! | AAACATATCAAAGTGCCGGT+AGG | - | chr6_4:79107406-79107425 | Msa0998300:CDS | 40.0% |
| AGAGGAATATATCCTCCTAC+CGG | + | chr6_4:79107424-79107443 | None:intergenic | 40.0% | |
| TTTGAGCGTGGTGAACTTAT+AGG | - | chr6_4:79107457-79107476 | Msa0998300:CDS | 40.0% | |
| !!! | AGCTTTGAGTGAAGCTTTTG+AGG | - | chr6_4:79107480-79107499 | Msa0998300:CDS | 40.0% |
| AATTGTTTGGGAAGTGAAGG+AGG | - | chr6_4:79107532-79107551 | Msa0998300:CDS | 40.0% | |
| CCAGAATGGATAAGAGACGT+TGG | + | chr6_4:79107005-79107024 | None:intergenic | 45.0% | |
| CCAACGTCTCTTATCCATTC+TGG | - | chr6_4:79107002-79107021 | Msa0998300:CDS | 45.0% | |
| ! | GGAAGTTTTTGTCCCCAGAA+TGG | + | chr6_4:79107019-79107038 | None:intergenic | 45.0% |
| GAACCACATAGAGAGTTTGC+AGG | + | chr6_4:79107310-79107329 | None:intergenic | 45.0% | |
| GGTTCCGACAATCCTTCTTT+CGG | - | chr6_4:79107325-79107344 | Msa0998300:CDS | 45.0% | |
| TCGCCATAATGACCGAAAGA+AGG | + | chr6_4:79107340-79107359 | None:intergenic | 45.0% | |
| GTGATGAGAAGAACAGTGTG+CGG | + | chr6_4:79107638-79107657 | None:intergenic | 45.0% | |
| CCAGAATGGATAAGAGACGT+TGG | + | chr6_4:79107005-79107024 | None:intergenic | 45.0% | |
| CCAACGTCTCTTATCCATTC+TGG | - | chr6_4:79107002-79107021 | Msa0998300:CDS | 45.0% | |
| ! | GGAAGTTTTTGTCCCCAGAA+TGG | + | chr6_4:79107019-79107038 | None:intergenic | 45.0% |
| GAACCACATAGAGAGTTTGC+AGG | + | chr6_4:79107310-79107329 | None:intergenic | 45.0% | |
| GGTTCCGACAATCCTTCTTT+CGG | - | chr6_4:79107325-79107344 | Msa0998300:CDS | 45.0% | |
| TCGCCATAATGACCGAAAGA+AGG | + | chr6_4:79107340-79107359 | None:intergenic | 45.0% | |
| GTGATGAGAAGAACAGTGTG+CGG | + | chr6_4:79107638-79107657 | None:intergenic | 45.0% | |
| GACTGAGAGTGGGATTGATG+TGG | + | chr6_4:79106896-79106915 | None:intergenic | 50.0% | |
| !! | CATATCAAAGTGCCGGTAGG+AGG | - | chr6_4:79107409-79107428 | Msa0998300:CDS | 50.0% |
| GACTGAGAGTGGGATTGATG+TGG | + | chr6_4:79106896-79106915 | None:intergenic | 50.0% | |
| !! | CATATCAAAGTGCCGGTAGG+AGG | - | chr6_4:79107409-79107428 | Msa0998300:CDS | 50.0% |
| AGGTGGCTGAGACTGAGAGT+GGG | + | chr6_4:79106906-79106925 | None:intergenic | 55.0% | |
| ! | CTTCCTTTTTACTGCGGCGC+CGG | - | chr6_4:79107034-79107053 | Msa0998300:CDS | 55.0% |
| AGGTGGCTGAGACTGAGAGT+GGG | + | chr6_4:79106906-79106925 | None:intergenic | 55.0% | |
| ! | CTTCCTTTTTACTGCGGCGC+CGG | - | chr6_4:79107034-79107053 | Msa0998300:CDS | 55.0% |
| GAGGTGGCTGAGACTGAGAG+TGG | + | chr6_4:79106907-79106926 | None:intergenic | 60.0% | |
| TCTCCGGCGCCGCAGTAAAA+AGG | + | chr6_4:79107040-79107059 | None:intergenic | 60.0% | |
| GAGGTGGCTGAGACTGAGAG+TGG | + | chr6_4:79106907-79106926 | None:intergenic | 60.0% | |
| TCTCCGGCGCCGCAGTAAAA+AGG | + | chr6_4:79107040-79107059 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 79106818 | 79107693 | 79106818 | ID=Msa0998300;Name=Msa0998300 |
| chr6_4 | mRNA | 79106818 | 79107693 | 79106818 | ID=Msa0998300-mRNA-1;Parent=Msa0998300;Name=Msa0998300-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|291 |
| chr6_4 | exon | 79106818 | 79107693 | 79106818 | ID=Msa0998300-mRNA-1:exon:14926;Parent=Msa0998300-mRNA-1 |
| chr6_4 | CDS | 79106818 | 79107693 | 79106818 | ID=Msa0998300-mRNA-1:cds;Parent=Msa0998300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
