Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963590 | MCI05837.1 | 74.118 | 85 | 17 | 2 | 76 | 156 | 29 | 112 | 2.45e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963590 | A0A392P1G6 | 74.118 | 85 | 17 | 2 | 76 | 156 | 29 | 112 | 1.17e-32 | 123 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0897860 | Msa0963590 | 0.831673 | 1.461262e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963590 | MtrunA17_Chr6g0483921 | 52.525 | 99 | 40 | 2 | 62 | 156 | 145 | 240 | 1.06e-24 | 97.8 |
| Msa0963590 | MtrunA17_Chr6g0483851 | 53.535 | 99 | 39 | 2 | 62 | 156 | 149 | 244 | 9.15e-24 | 97.1 |
| Msa0963590 | MtrunA17_Chr6g0483851 | 51.562 | 64 | 28 | 1 | 17 | 80 | 5 | 65 | 2.06e-12 | 64.3 |
| Msa0963590 | MtrunA17_Chr6g0483791 | 53.535 | 99 | 39 | 2 | 62 | 156 | 144 | 239 | 1.44e-23 | 96.3 |
| Msa0963590 | MtrunA17_Chr6g0483791 | 56.250 | 64 | 25 | 1 | 18 | 81 | 1 | 61 | 2.50e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAATTGAGGAATTTA+AGG | 0.157810 | 6_3:+88196787 | Msa0963590:three_prime_UTR |
| GCGATATTAGCTACCCATTC+TGG | 0.203275 | 6_3:+88192574 | Msa0963590:CDS |
| ATTGGTTGATTTCAATGTTA+TGG | 0.260052 | 6_3:+88193989 | Msa0963590:CDS |
| ATCCTCGATTCCTTCATTTC+CGG | 0.282531 | 6_3:-88196827 | None:intergenic |
| TTTGTCTAAGTCATAATAAA+AGG | 0.287423 | 6_3:+88196957 | Msa0963590:three_prime_UTR |
| TAATTCAGAGCAGTAAAATA+AGG | 0.290607 | 6_3:-88197094 | None:intergenic |
| CCTAGTTTCAAGTGACAAAT+TGG | 0.292169 | 6_3:+88193971 | Msa0963590:CDS |
| ACCACATCTTGTGAACCTTT+TGG | 0.312693 | 6_3:+88192537 | Msa0963590:CDS |
| TAGGTGAAGGATTTGAGGTT+GGG | 0.354930 | 6_3:+88194075 | Msa0963590:CDS |
| TAATAAAAGGGCTTACTAAA+AGG | 0.360986 | 6_3:+88196970 | Msa0963590:three_prime_UTR |
| TCGCTTTGGAGCGTTCTTCT+CGG | 0.377807 | 6_3:+88192400 | Msa0963590:CDS |
| AAGAATAGTATCACCTTTCC+TGG | 0.384015 | 6_3:+88194017 | Msa0963590:CDS |
| TGAGGTTGGGTGGAGTGGTG+TGG | 0.400616 | 6_3:+88194088 | Msa0963590:CDS |
| GAGGTTGGGTGGAGTGGTGT+GGG | 0.406803 | 6_3:+88194089 | Msa0963590:CDS |
| AATTCAGAGCAGTAAAATAA+GGG | 0.418087 | 6_3:-88197093 | None:intergenic |
| GTCAATGAATTCTTCAAGCC+AGG | 0.429363 | 6_3:-88194035 | None:intergenic |
| GGATTTGAGGTTGGGTGGAG+TGG | 0.435864 | 6_3:+88194083 | Msa0963590:CDS |
| AAAGAAAACGAAGGTAGAAA+AGG | 0.443625 | 6_3:-88192435 | None:intergenic |
| CCAATTTGTCACTTGAAACT+AGG | 0.446574 | 6_3:-88193971 | None:intergenic |
| GACTTAAGAAGAAGAGTGGA+AGG | 0.485625 | 6_3:-88192479 | None:intergenic |
| TGCTTTAGATTCATGTGTGT+GGG | 0.486510 | 6_3:-88196693 | None:intergenic |
| CTGAAATTTCCACATCCAAA+AGG | 0.487786 | 6_3:-88192552 | None:intergenic |
| TTAGGTGAAGGATTTGAGGT+TGG | 0.490349 | 6_3:+88194074 | Msa0963590:CDS |
| AGAAACTAGGAACATCGCTT+TGG | 0.491158 | 6_3:+88192386 | Msa0963590:CDS |
| AGGTGAAAGTAAAACTGATA+TGG | 0.493181 | 6_3:+88196465 | Msa0963590:intron |
| TTGTCTAAGTCATAATAAAA+GGG | 0.495589 | 6_3:+88196958 | Msa0963590:three_prime_UTR |
| GATGGCCGCAATAACTTGGT+TGG | 0.501772 | 6_3:-88192608 | None:intergenic |
| GTGAAGGATTTGAGGTTGGG+TGG | 0.502660 | 6_3:+88194078 | Msa0963590:CDS |
| AATTGACTTAAGAAGAAGAG+TGG | 0.504168 | 6_3:-88192483 | None:intergenic |
| TGTGGTGGTTGCATGAAATC+TGG | 0.506044 | 6_3:+88194122 | Msa0963590:CDS |
| ATGTTTATATGATTTAAAAG+AGG | 0.506541 | 6_3:+88196533 | Msa0963590:three_prime_UTR |
| GACATGTGATCCGGAAATGA+AGG | 0.518202 | 6_3:+88196817 | Msa0963590:three_prime_UTR |
| GTTGGCAATAATCAAAATTG+AGG | 0.520208 | 6_3:+88196778 | Msa0963590:three_prime_UTR |
| CGAATGAAAATATATGAAGA+AGG | 0.537224 | 6_3:+88196494 | Msa0963590:exon |
| ATGCTTTAGATTCATGTGTG+TGG | 0.542238 | 6_3:-88196694 | None:intergenic |
| TAGAATTGCCACAGAGAGAG+AGG | 0.542894 | 6_3:-88197014 | None:intergenic |
| GGGAAATGCTAGAAGAAACT+AGG | 0.548819 | 6_3:+88192373 | Msa0963590:CDS |
| GGAACACGTGACATGTGATC+CGG | 0.553576 | 6_3:+88196808 | Msa0963590:three_prime_UTR |
| GGATGTTAAGACTCCAGAAT+GGG | 0.565498 | 6_3:-88192587 | None:intergenic |
| AACGAAGGTAGAAAAGGAAG+CGG | 0.568895 | 6_3:-88192429 | None:intergenic |
| TCCTCTGACCTCTCTCTCTG+TGG | 0.573264 | 6_3:+88197006 | Msa0963590:three_prime_UTR |
| AAATATTCCTCATTTCTATG+TGG | 0.576081 | 6_3:+88196866 | Msa0963590:three_prime_UTR |
| TCCAAAAGGTTCACAAGATG+TGG | 0.579964 | 6_3:-88192538 | None:intergenic |
| CAGAAGAGAATACACACAGT+TGG | 0.587130 | 6_3:+88196760 | Msa0963590:three_prime_UTR |
| TGGATGTTAAGACTCCAGAA+TGG | 0.599363 | 6_3:-88192588 | None:intergenic |
| TGAATTCTTCAAGCCAGGAA+AGG | 0.602825 | 6_3:-88194030 | None:intergenic |
| ATGATCACCACATAGAAATG+AGG | 0.605025 | 6_3:-88196873 | None:intergenic |
| GCCACAGAGAGAGAGGTCAG+AGG | 0.614478 | 6_3:-88197007 | None:intergenic |
| AAAAGGTTCACAAGATGTGG+TGG | 0.620771 | 6_3:-88192535 | None:intergenic |
| GAATTCATTGACAAATGACT+CGG | 0.637714 | 6_3:+88194046 | Msa0963590:CDS |
| ATCCGGAAATGAAGGAATCG+AGG | 0.638887 | 6_3:+88196825 | Msa0963590:three_prime_UTR |
| ACACATGAATCTAAAGCATG+TGG | 0.642805 | 6_3:+88196698 | Msa0963590:three_prime_UTR |
| GAAGGTAGAAAAGGAAGCGG+AGG | 0.652700 | 6_3:-88192426 | None:intergenic |
| TAAAGCATGTGGATAAAACA+AGG | 0.661933 | 6_3:+88196709 | Msa0963590:three_prime_UTR |
| GGTGGACACAGCATTAGTAG+TGG | 0.686937 | 6_3:-88192517 | None:intergenic |
| GGTGTGGGAGAAGAAATATG+TGG | 0.752804 | 6_3:+88194104 | Msa0963590:CDS |
| GTGGGAGAAGAAATATGTGG+TGG | 0.753774 | 6_3:+88194107 | Msa0963590:CDS |
| TTGATGATGAAAGAAAACGA+AGG | 0.776756 | 6_3:-88192444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTATGAATAAAAAAG+AGG | + | chr6_3:88193079-88193098 | Msa0963590:intron | 10.0% |
| !! | GAAATAAATAAAAACAAAAT+TGG | + | chr6_3:88193147-88193166 | Msa0963590:intron | 10.0% |
| !!! | TTTTTATTATATGAGTTTTT+TGG | - | chr6_3:88195183-88195202 | None:intergenic | 10.0% |
| !! | CTTTAAACATGTTATAATTA+TGG | - | chr6_3:88192916-88192935 | None:intergenic | 15.0% |
| !! | CTTTGTAATCAAATTTATAT+TGG | - | chr6_3:88195129-88195148 | None:intergenic | 15.0% |
| !! | ATGTTTATATGATTTAAAAG+AGG | + | chr6_3:88196533-88196552 | Msa0963590:three_prime_UTR | 15.0% |
| !!! | TTATTAAAACTTTTGAACAA+AGG | - | chr6_3:88196592-88196611 | None:intergenic | 15.0% |
| !!! | TTATTTGAGATCATAAAAAT+AGG | - | chr6_3:88196740-88196759 | None:intergenic | 15.0% |
| !! | CTATATGTAGGAATTAAATT+TGG | - | chr6_3:88193215-88193234 | None:intergenic | 20.0% |
| !!! | TTGGTTTTTTAACTATATGT+AGG | - | chr6_3:88193227-88193246 | None:intergenic | 20.0% |
| !! | TACATATAGTTAAAAAACCA+AGG | + | chr6_3:88193226-88193245 | Msa0963590:intron | 20.0% |
| !! | ACATATAGTTAAAAAACCAA+GGG | + | chr6_3:88193227-88193246 | Msa0963590:intron | 20.0% |
| !!! | AACTAAAATACCATTTTGAT+TGG | + | chr6_3:88193435-88193454 | Msa0963590:intron | 20.0% |
| !! | TTTACATCAATATATTGCTT+CGG | - | chr6_3:88193795-88193814 | None:intergenic | 20.0% |
| !!! | ACATATTCATAAGATGTTTT+AGG | + | chr6_3:88194325-88194344 | Msa0963590:intron | 20.0% |
| !!! | TATTTTAAGAATGAGGATAA+AGG | - | chr6_3:88194497-88194516 | None:intergenic | 20.0% |
| !!! | GAAATCATATTTTAAGAATG+AGG | - | chr6_3:88194504-88194523 | None:intergenic | 20.0% |
| !! | AAAAAAAATAGTCCAATCTA+AGG | - | chr6_3:88195041-88195060 | None:intergenic | 20.0% |
| !!! | GATTGGACTATTTTTTTTAT+AGG | + | chr6_3:88195043-88195062 | Msa0963590:intron | 20.0% |
| !! | AATTTGATTACAAAGAGATA+TGG | + | chr6_3:88195134-88195153 | Msa0963590:intron | 20.0% |
| !! | ATTTGATTACAAAGAGATAT+GGG | + | chr6_3:88195135-88195154 | Msa0963590:intron | 20.0% |
| !! | ACAAAAGATAATGATACATA+TGG | - | chr6_3:88195286-88195305 | None:intergenic | 20.0% |
| !! | TGACAAACTTATTTACAATA+AGG | + | chr6_3:88195656-88195675 | Msa0963590:intron | 20.0% |
| !! | GACAAACTTATTTACAATAA+GGG | + | chr6_3:88195657-88195676 | Msa0963590:intron | 20.0% |
| !! | ATTCTTTATCAAATTGCTAA+AGG | + | chr6_3:88195711-88195730 | Msa0963590:intron | 20.0% |
| !! | TTCTTTATCAAATTGCTAAA+GGG | + | chr6_3:88195712-88195731 | Msa0963590:intron | 20.0% |
| !! | AATCAAAATTGAGGAATTTA+AGG | + | chr6_3:88196787-88196806 | Msa0963590:three_prime_UTR | 20.0% |
| !!! | ATAGAAATGAGGAATATTTT+CGG | - | chr6_3:88196865-88196884 | None:intergenic | 20.0% |
| !! | TTTGTCTAAGTCATAATAAA+AGG | + | chr6_3:88196957-88196976 | Msa0963590:three_prime_UTR | 20.0% |
| !! | TTGTCTAAGTCATAATAAAA+GGG | + | chr6_3:88196958-88196977 | Msa0963590:three_prime_UTR | 20.0% |
| !! | GAGACATTTGATTTATATGA+AGG | - | chr6_3:88192701-88192720 | None:intergenic | 25.0% |
| !!! | GTATTTTAGTTTGTGAGATT+TGG | - | chr6_3:88193426-88193445 | None:intergenic | 25.0% |
| !!! | TTTTGACTGAATTTTCAAGT+TGG | + | chr6_3:88193533-88193552 | Msa0963590:intron | 25.0% |
| !! | ATTGGTTGATTTCAATGTTA+TGG | + | chr6_3:88193989-88194008 | Msa0963590:CDS | 25.0% |
| ! | GAAGAATCTAATAAAATGTC+AGG | - | chr6_3:88194251-88194270 | None:intergenic | 25.0% |
| ! | GAATATGTGATAAACTAGTT+TGG | - | chr6_3:88194313-88194332 | None:intergenic | 25.0% |
| !!! | TAAGATGTTTTAGGATTTTG+TGG | + | chr6_3:88194334-88194353 | Msa0963590:intron | 25.0% |
| !!! | GATTTTGTGGATTGATTTAA+TGG | + | chr6_3:88194347-88194366 | Msa0963590:intron | 25.0% |
| ! | TTAAGAATCTTTCAATGTCT+TGG | - | chr6_3:88195338-88195357 | None:intergenic | 25.0% |
| !! | AAATGAAGATTTTATGAACG+AGG | + | chr6_3:88195524-88195543 | Msa0963590:intron | 25.0% |
| ! | ATCTATGAATTAATGTCCAA+TGG | + | chr6_3:88195627-88195646 | Msa0963590:intron | 25.0% |
| ! | AAATAATGCTCTCTTTCTTT+GGG | - | chr6_3:88195872-88195891 | None:intergenic | 25.0% |
| ! | AAGTCTGATGTTTATAGTTA+TGG | + | chr6_3:88195969-88195988 | Msa0963590:intron | 25.0% |
| ! | TAGTTATGGAATGATGTTAT+TGG | + | chr6_3:88195983-88196002 | Msa0963590:intron | 25.0% |
| ! | TTCAAACATTTCCAAAAGAT+AGG | + | chr6_3:88196183-88196202 | Msa0963590:intron | 25.0% |
| ! | AGAAGGAAAAATGAATTCAT+TGG | + | chr6_3:88196235-88196254 | Msa0963590:intron | 25.0% |
| ! | CGAATGAAAATATATGAAGA+AGG | + | chr6_3:88196494-88196513 | Msa0963590:exon | 25.0% |
| !! | GATTTTCAGTATTTCACAAT+CGG | - | chr6_3:88196561-88196580 | None:intergenic | 25.0% |
| ! | AAATATTCCTCATTTCTATG+TGG | + | chr6_3:88196866-88196885 | Msa0963590:three_prime_UTR | 25.0% |
| ! | TAATAAAAGGGCTTACTAAA+AGG | + | chr6_3:88196970-88196989 | Msa0963590:three_prime_UTR | 25.0% |
| ! | AATTCAGAGCAGTAAAATAA+GGG | - | chr6_3:88197096-88197115 | None:intergenic | 25.0% |
| ! | TAATTCAGAGCAGTAAAATA+AGG | - | chr6_3:88197097-88197116 | None:intergenic | 25.0% |
| AAAGAAAACGAAGGTAGAAA+AGG | - | chr6_3:88192438-88192457 | None:intergenic | 30.0% | |
| !! | TTGATGATGAAAGAAAACGA+AGG | - | chr6_3:88192447-88192466 | None:intergenic | 30.0% |
| ! | AATTGACTTAAGAAGAAGAG+TGG | - | chr6_3:88192486-88192505 | None:intergenic | 30.0% |
| ! | ATGAAGGATGTGAAACTTTT+GGG | - | chr6_3:88192685-88192704 | None:intergenic | 30.0% |
| ! | TATGAAGGATGTGAAACTTT+TGG | - | chr6_3:88192686-88192705 | None:intergenic | 30.0% |
| TAAATCAAATGTCTCAACCA+AGG | + | chr6_3:88192706-88192725 | Msa0963590:intron | 30.0% | |
| !! | TCAACCAAGGTTCTAAAAAA+CGG | + | chr6_3:88192719-88192738 | Msa0963590:intron | 30.0% |
| !!! | GGTTTTAGAAAATTCAACAG+TGG | - | chr6_3:88193392-88193411 | None:intergenic | 30.0% |
| ATTTCTTTCTCAGCGTTAAA+AGG | + | chr6_3:88193622-88193641 | Msa0963590:intron | 30.0% | |
| TTTCTTTCTCAGCGTTAAAA+GGG | + | chr6_3:88193623-88193642 | Msa0963590:intron | 30.0% | |
| !!! | AGACCAAGGTTTTAAAAAAC+GGG | - | chr6_3:88193709-88193728 | None:intergenic | 30.0% |
| !!! | GAGACCAAGGTTTTAAAAAA+CGG | - | chr6_3:88193710-88193729 | None:intergenic | 30.0% |
| !! | TCAACTTTTGAGGATTGTAA+GGG | + | chr6_3:88193728-88193747 | Msa0963590:intron | 30.0% |
| GAATTCATTGACAAATGACT+CGG | + | chr6_3:88194046-88194065 | Msa0963590:CDS | 30.0% | |
| AGTTAACATGTCACAATACA+AGG | + | chr6_3:88194412-88194431 | Msa0963590:intron | 30.0% | |
| AGGCAAATAGAAATAGGAAT+GGG | - | chr6_3:88194658-88194677 | None:intergenic | 30.0% | |
| CAATAGTAGAAACATCATGT+AGG | - | chr6_3:88194866-88194885 | None:intergenic | 30.0% | |
| GCGAAAATGAAAATCATTCT+AGG | + | chr6_3:88194914-88194933 | Msa0963590:intron | 30.0% | |
| GTTAAAGAGACAAATACAAC+AGG | - | chr6_3:88194955-88194974 | None:intergenic | 30.0% | |
| ATTTGTCTCTTTAACGATTG+TGG | + | chr6_3:88194960-88194979 | Msa0963590:intron | 30.0% | |
| AAAATAGTCCAATCTAAGGA+AGG | - | chr6_3:88195037-88195056 | None:intergenic | 30.0% | |
| !! | TAATTCGACTTTGAAGTTGT+TGG | - | chr6_3:88195418-88195437 | None:intergenic | 30.0% |
| AACAACTTCAAAGTCGAATT+AGG | + | chr6_3:88195417-88195436 | Msa0963590:intron | 30.0% | |
| TTCAAAACAAAATCCGAGAA+GGG | - | chr6_3:88195589-88195608 | None:intergenic | 30.0% | |
| CAAACCACATAATATTCTCT+TGG | + | chr6_3:88195797-88195816 | Msa0963590:intron | 30.0% | |
| TCATCCAAGAGAATATTATG+TGG | - | chr6_3:88195804-88195823 | None:intergenic | 30.0% | |
| ! | TGTCCAAAGATATCAGATTT+TGG | + | chr6_3:88195831-88195850 | Msa0963590:intron | 30.0% |
| AGTCCAAAATCTGATATCTT+TGG | - | chr6_3:88195837-88195856 | None:intergenic | 30.0% | |
| ! | AAAGATATCAGATTTTGGAC+TGG | + | chr6_3:88195836-88195855 | Msa0963590:intron | 30.0% |
| GAAATAATGCTCTCTTTCTT+TGG | - | chr6_3:88195873-88195892 | None:intergenic | 30.0% | |
| TGGAATGATGTTATTGGAAA+TGG | + | chr6_3:88195989-88196008 | Msa0963590:intron | 30.0% | |
| ATGATGTTATTGGAAATGGT+TGG | + | chr6_3:88195993-88196012 | Msa0963590:intron | 30.0% | |
| TGGGATATACTTTCCATATT+GGG | + | chr6_3:88196055-88196074 | Msa0963590:intron | 30.0% | |
| TTCCATATTGGGTATACAAA+AGG | + | chr6_3:88196066-88196085 | Msa0963590:intron | 30.0% | |
| AGAGTGATTGAAATGTTAGA+AGG | + | chr6_3:88196218-88196237 | Msa0963590:intron | 30.0% | |
| ATAGTAGGAGAAGAAAGAAT+AGG | - | chr6_3:88196275-88196294 | None:intergenic | 30.0% | |
| TTTCATGAAGTTGAAGATTC+TGG | - | chr6_3:88196305-88196324 | None:intergenic | 30.0% | |
| ! | CTTCAACTTCATGAAAGTTT+TGG | + | chr6_3:88196309-88196328 | Msa0963590:intron | 30.0% |
| TGATAGAAAAAAATGCAGTG+TGG | - | chr6_3:88196345-88196364 | None:intergenic | 30.0% | |
| AGGTGAAAGTAAAACTGATA+TGG | + | chr6_3:88196465-88196484 | Msa0963590:intron | 30.0% | |
| TAAAGCATGTGGATAAAACA+AGG | + | chr6_3:88196709-88196728 | Msa0963590:three_prime_UTR | 30.0% | |
| GTTGGCAATAATCAAAATTG+AGG | + | chr6_3:88196778-88196797 | Msa0963590:three_prime_UTR | 30.0% | |
| CTGAAATTTCCACATCCAAA+AGG | - | chr6_3:88192555-88192574 | None:intergenic | 35.0% | |
| AACATCCAACCAAGTTATTG+CGG | + | chr6_3:88192603-88192622 | Msa0963590:intron | 35.0% | |
| AATCAAGCTTGAAGTTTGGA+TGG | - | chr6_3:88192629-88192648 | None:intergenic | 35.0% | |
| TGACAATCAAGCTTGAAGTT+TGG | - | chr6_3:88192633-88192652 | None:intergenic | 35.0% | |
| TTCAAGCTTGATTGTCAACA+TGG | + | chr6_3:88192636-88192655 | Msa0963590:intron | 35.0% | |
| ! | AAAAACAAAATTGGCTCAGC+TGG | + | chr6_3:88193156-88193175 | Msa0963590:intron | 35.0% |
| ! | AAGGGTGCAGATATGAAAAA+GGG | + | chr6_3:88193245-88193264 | Msa0963590:intron | 35.0% |
| !! | TGAGATTTGGTGAACATTTG+AGG | - | chr6_3:88193413-88193432 | None:intergenic | 35.0% |
| GCGTGAAAATCCAATCAAAA+TGG | - | chr6_3:88193448-88193467 | None:intergenic | 35.0% | |
| TTCTTTCTCAGCGTTAAAAG+GGG | + | chr6_3:88193624-88193643 | Msa0963590:intron | 35.0% | |
| !! | CTCAACTTTTGAGGATTGTA+AGG | + | chr6_3:88193727-88193746 | Msa0963590:intron | 35.0% |
| TATACTCTATTGTACGAGTG+TGG | + | chr6_3:88193858-88193877 | Msa0963590:intron | 35.0% | |
| ! | CCAATTTGTCACTTGAAACT+AGG | - | chr6_3:88193974-88193993 | None:intergenic | 35.0% |
| ! | CCTAGTTTCAAGTGACAAAT+TGG | + | chr6_3:88193971-88193990 | Msa0963590:CDS | 35.0% |
| AAGAATAGTATCACCTTTCC+TGG | + | chr6_3:88194017-88194036 | Msa0963590:CDS | 35.0% | |
| !! | ACAAATGACTCGGATGTTTT+AGG | + | chr6_3:88194056-88194075 | Msa0963590:CDS | 35.0% |
| !! | TGTTTTAGGTGAAGGATTTG+AGG | + | chr6_3:88194070-88194089 | Msa0963590:CDS | 35.0% |
| ATGAAATCTGGTAGGAAATG+CGG | + | chr6_3:88194134-88194153 | Msa0963590:intron | 35.0% | |
| GATGGAGTAACATCATCAAA+TGG | + | chr6_3:88194212-88194231 | Msa0963590:intron | 35.0% | |
| !! | TTTCCGAGCTTTAAATCCAA+CGG | + | chr6_3:88194543-88194562 | Msa0963590:intron | 35.0% |
| TGAGCAAGGTTTGTAAATAG+TGG | + | chr6_3:88194608-88194627 | Msa0963590:intron | 35.0% | |
| GGCAAATAGAAATAGGAATG+GGG | - | chr6_3:88194657-88194676 | None:intergenic | 35.0% | |
| GAGGCAAATAGAAATAGGAA+TGG | - | chr6_3:88194659-88194678 | None:intergenic | 35.0% | |
| ACTGAGAGGCAAATAGAAAT+AGG | - | chr6_3:88194664-88194683 | None:intergenic | 35.0% | |
| GTAGGAATCTGTTAGAACAT+TGG | - | chr6_3:88194848-88194867 | None:intergenic | 35.0% | |
| ACTGTTATCCTTCCTTAGAT+TGG | + | chr6_3:88195026-88195045 | Msa0963590:intron | 35.0% | |
| AAAACCTTAAGCAGATAGCT+TGG | + | chr6_3:88195096-88195115 | Msa0963590:intron | 35.0% | |
| TTTGTATCTTCTAGCAGTGA+AGG | - | chr6_3:88195373-88195392 | None:intergenic | 35.0% | |
| TTCAAAGTCGAATTAGGACA+AGG | + | chr6_3:88195423-88195442 | Msa0963590:intron | 35.0% | |
| CGATGCCTTCAATATCTTTA+CGG | - | chr6_3:88195499-88195518 | None:intergenic | 35.0% | |
| !! | AAGATATTGAAGGCATCGAA+AGG | + | chr6_3:88195501-88195520 | Msa0963590:intron | 35.0% |
| CTTCAAAACAAAATCCGAGA+AGG | - | chr6_3:88195590-88195609 | None:intergenic | 35.0% | |
| !!! | CTTCTCGGATTTTGTTTTGA+AGG | + | chr6_3:88195588-88195607 | Msa0963590:intron | 35.0% |
| !!! | TCGGATTTTGTTTTGAAGGT+CGG | + | chr6_3:88195592-88195611 | Msa0963590:intron | 35.0% |
| AAGTTTGTCAAGAGAACCAT+TGG | - | chr6_3:88195646-88195665 | None:intergenic | 35.0% | |
| TAAAGAATTTCCCAGCTCAA+AGG | - | chr6_3:88195699-88195718 | None:intergenic | 35.0% | |
| AGGGTTGGAATATCTACATA+GGG | + | chr6_3:88195743-88195762 | Msa0963590:intron | 35.0% | |
| ATTTCGATGTCAAATGCAAG+AGG | + | chr6_3:88195888-88195907 | Msa0963590:intron | 35.0% | |
| TTTCGATGTCAAATGCAAGA+GGG | + | chr6_3:88195889-88195908 | Msa0963590:intron | 35.0% | |
| AAATTTCTATTCCACAGCTC+TGG | - | chr6_3:88195933-88195952 | None:intergenic | 35.0% | |
| ! | GAGCTGTGGAATAGAAATTT+TGG | + | chr6_3:88195933-88195952 | Msa0963590:intron | 35.0% |
| ! | CTGTGGAATAGAAATTTTGG+AGG | + | chr6_3:88195936-88195955 | Msa0963590:intron | 35.0% |
| ATGTTATTGGAAATGGTTGG+AGG | + | chr6_3:88195996-88196015 | Msa0963590:intron | 35.0% | |
| TGTTATTGGAAATGGTTGGA+GGG | + | chr6_3:88195997-88196016 | Msa0963590:intron | 35.0% | |
| GTGGGATATACTTTCCATAT+TGG | + | chr6_3:88196054-88196073 | Msa0963590:intron | 35.0% | |
| ! | AGCCTTTTGTATACCCAATA+TGG | - | chr6_3:88196071-88196090 | None:intergenic | 35.0% |
| GTATACAAAAGGCTTGATGT+TGG | + | chr6_3:88196077-88196096 | Msa0963590:intron | 35.0% | |
| TCAATCACTCTACTCATTGT+AGG | - | chr6_3:88196209-88196228 | None:intergenic | 35.0% | |
| GGAGAAGAAAGAATAGGTTT+GGG | - | chr6_3:88196269-88196288 | None:intergenic | 35.0% | |
| AGGAGAAGAAAGAATAGGTT+TGG | - | chr6_3:88196270-88196289 | None:intergenic | 35.0% | |
| ! | TGCTTTAGATTCATGTGTGT+GGG | - | chr6_3:88196696-88196715 | None:intergenic | 35.0% |
| ! | ATGCTTTAGATTCATGTGTG+TGG | - | chr6_3:88196697-88196716 | None:intergenic | 35.0% |
| ! | ACACATGAATCTAAAGCATG+TGG | + | chr6_3:88196698-88196717 | Msa0963590:three_prime_UTR | 35.0% |
| ATGATCACCACATAGAAATG+AGG | - | chr6_3:88196876-88196895 | None:intergenic | 35.0% | |
| GGGAAATGCTAGAAGAAACT+AGG | + | chr6_3:88192373-88192392 | Msa0963590:CDS | 40.0% | |
| AGAAACTAGGAACATCGCTT+TGG | + | chr6_3:88192386-88192405 | Msa0963590:CDS | 40.0% | |
| AACGAAGGTAGAAAAGGAAG+CGG | - | chr6_3:88192432-88192451 | None:intergenic | 40.0% | |
| GACTTAAGAAGAAGAGTGGA+AGG | - | chr6_3:88192482-88192501 | None:intergenic | 40.0% | |
| AAAAGGTTCACAAGATGTGG+TGG | - | chr6_3:88192538-88192557 | None:intergenic | 40.0% | |
| ! | ACCACATCTTGTGAACCTTT+TGG | + | chr6_3:88192537-88192556 | Msa0963590:CDS | 40.0% |
| TCCAAAAGGTTCACAAGATG+TGG | - | chr6_3:88192541-88192560 | None:intergenic | 40.0% | |
| ! | TCTTGTGAACCTTTTGGATG+TGG | + | chr6_3:88192543-88192562 | Msa0963590:CDS | 40.0% |
| GGATGTTAAGACTCCAGAAT+GGG | - | chr6_3:88192590-88192609 | None:intergenic | 40.0% | |
| TGGATGTTAAGACTCCAGAA+TGG | - | chr6_3:88192591-88192610 | None:intergenic | 40.0% | |
| !! | AAGGTTCTAAAAAACGGTCG+CGG | + | chr6_3:88192725-88192744 | Msa0963590:intron | 40.0% |
| GATACAAATAACGGTCTTCG+CGG | + | chr6_3:88192802-88192821 | Msa0963590:intron | 40.0% | |
| !! | CTTTTTCATATCTGCACCCT+TGG | - | chr6_3:88193246-88193265 | None:intergenic | 40.0% |
| ! | CAAGGGTGCAGATATGAAAA+AGG | + | chr6_3:88193244-88193263 | Msa0963590:intron | 40.0% |
| AGGGTGCAGATATGAAAAAG+GGG | + | chr6_3:88193246-88193265 | Msa0963590:intron | 40.0% | |
| GTGCATAAGCAACAGCATAT+AGG | + | chr6_3:88193269-88193288 | Msa0963590:intron | 40.0% | |
| AGCATATAGGACAAAACTGC+AGG | + | chr6_3:88193282-88193301 | Msa0963590:intron | 40.0% | |
| ATATAGGACAAAACTGCAGG+TGG | + | chr6_3:88193285-88193304 | Msa0963590:intron | 40.0% | |
| TATAGGACAAAACTGCAGGT+GGG | + | chr6_3:88193286-88193305 | Msa0963590:intron | 40.0% | |
| ACGTGAAGAAAGGAAGAAGA+AGG | - | chr6_3:88193346-88193365 | None:intergenic | 40.0% | |
| GTTGTTCTTCACGTGAAGAA+AGG | - | chr6_3:88193356-88193375 | None:intergenic | 40.0% | |
| !! | TTTCAAGTTGGAGTCCGTAA+CGG | + | chr6_3:88193545-88193564 | Msa0963590:intron | 40.0% |
| AGCGTTAAAAGGGGCAAAAA+CGG | + | chr6_3:88193633-88193652 | Msa0963590:intron | 40.0% | |
| AAAAGGGGCAAAAACGGTAA+CGG | + | chr6_3:88193639-88193658 | Msa0963590:intron | 40.0% | |
| CAAAAACGGCCGTTACAAAT+CGG | - | chr6_3:88193677-88193696 | None:intergenic | 40.0% | |
| !!! | ATTTGTAACGGCCGTTTTTG+CGG | + | chr6_3:88193677-88193696 | Msa0963590:intron | 40.0% |
| !!! | CGTCCCGTTTTTTAAAACCT+TGG | + | chr6_3:88193703-88193722 | Msa0963590:intron | 40.0% |
| ! | AACCTTGGTCTCAACTTTTG+AGG | + | chr6_3:88193718-88193737 | Msa0963590:intron | 40.0% |
| ATCCTCAAAAGTTGAGACCA+AGG | - | chr6_3:88193723-88193742 | None:intergenic | 40.0% | |
| GGATTGTAAGGGACGATTTA+TGG | + | chr6_3:88193739-88193758 | Msa0963590:intron | 40.0% | |
| ! | AACGTAGAGGAGTTTGAGTT+TGG | - | chr6_3:88193891-88193910 | None:intergenic | 40.0% |
| AACTTCAGAACTCAACGTAG+AGG | - | chr6_3:88193904-88193923 | None:intergenic | 40.0% | |
| !! | TGAAGTGTTTTCTTGCCTCA+TGG | + | chr6_3:88193926-88193945 | Msa0963590:CDS | 40.0% |
| TGAATTCTTCAAGCCAGGAA+AGG | - | chr6_3:88194033-88194052 | None:intergenic | 40.0% | |
| GTCAATGAATTCTTCAAGCC+AGG | - | chr6_3:88194038-88194057 | None:intergenic | 40.0% | |
| ! | TTAGGTGAAGGATTTGAGGT+TGG | + | chr6_3:88194074-88194093 | Msa0963590:CDS | 40.0% |
| ! | TAGGTGAAGGATTTGAGGTT+GGG | + | chr6_3:88194075-88194094 | Msa0963590:CDS | 40.0% |
| TTCAGTTATGTGTCTCTTGC+CGG | + | chr6_3:88194175-88194194 | Msa0963590:intron | 40.0% | |
| ! | CGATACGTCTAGTTCATGTT+TGG | + | chr6_3:88194381-88194400 | Msa0963590:intron | 40.0% |
| !! | AATCATGGAGGTTTTCTGGT+GGG | - | chr6_3:88194688-88194707 | None:intergenic | 40.0% |
| ! | AAGGAATCATGGAGGTTTTC+TGG | - | chr6_3:88194692-88194711 | None:intergenic | 40.0% |
| AAAGTCGAATTAGGACAAGG+TGG | + | chr6_3:88195426-88195445 | Msa0963590:intron | 40.0% | |
| GAATTAGGACAAGGTGGTTA+TGG | + | chr6_3:88195432-88195451 | Msa0963590:intron | 40.0% | |
| !! | GGTTATGGTGCTGTATACAA+AGG | + | chr6_3:88195447-88195466 | Msa0963590:intron | 40.0% |
| TCAATATCTTTACGGCCACA+GGG | - | chr6_3:88195491-88195510 | None:intergenic | 40.0% | |
| TTCAATATCTTTACGGCCAC+AGG | - | chr6_3:88195492-88195511 | None:intergenic | 40.0% | |
| TGTGGCCGTAAAGATATTGA+AGG | + | chr6_3:88195491-88195510 | Msa0963590:intron | 40.0% | |
| GGCAACAACATTAACATGAG+AGG | - | chr6_3:88195568-88195587 | None:intergenic | 40.0% | |
| GTTAATGTTGTTGCCCTTCT+CGG | + | chr6_3:88195573-88195592 | Msa0963590:intron | 40.0% | |
| GAGGGTTGGAATATCTACAT+AGG | + | chr6_3:88195742-88195761 | Msa0963590:intron | 40.0% | |
| GGGTTGGAATATCTACATAG+GGG | + | chr6_3:88195744-88195763 | Msa0963590:intron | 40.0% | |
| TCAAATGCAAGAGGGACAAT+GGG | + | chr6_3:88195897-88195916 | Msa0963590:intron | 40.0% | |
| TACAAAAGGCTTGATGTTGG+CGG | + | chr6_3:88196080-88196099 | Msa0963590:intron | 40.0% | |
| TTGCGATCTCATCTTCTTCT+GGG | - | chr6_3:88196133-88196152 | None:intergenic | 40.0% | |
| TTTGCGATCTCATCTTCTTC+TGG | - | chr6_3:88196134-88196153 | None:intergenic | 40.0% | |
| ! | CTCATTGTAGGCCTATCTTT+TGG | - | chr6_3:88196197-88196216 | None:intergenic | 40.0% |
| GAAGAAAGAATAGGTTTGGG+TGG | - | chr6_3:88196266-88196285 | None:intergenic | 40.0% | |
| GATTCTGGTACAGGTATAGT+AGG | - | chr6_3:88196290-88196309 | None:intergenic | 40.0% | |
| GAAGTTGAAGATTCTGGTAC+AGG | - | chr6_3:88196299-88196318 | None:intergenic | 40.0% | |
| TAAATCTGTTGCTGCAATGC+AGG | + | chr6_3:88196445-88196464 | Msa0963590:intron | 40.0% | |
| CAGAAGAGAATACACACAGT+TGG | + | chr6_3:88196760-88196779 | Msa0963590:three_prime_UTR | 40.0% | |
| ATCCTCGATTCCTTCATTTC+CGG | - | chr6_3:88196830-88196849 | None:intergenic | 40.0% | |
| GCGATATTAGCTACCCATTC+TGG | + | chr6_3:88192574-88192593 | Msa0963590:CDS | 45.0% | |
| TTTGGATGGCCGCAATAACT+TGG | - | chr6_3:88192615-88192634 | None:intergenic | 45.0% | |
| !!! | GCGACCGTTTTTTAGAACCT+TGG | - | chr6_3:88192726-88192745 | None:intergenic | 45.0% |
| CGTTAAGGTTGTCGCGATTT+CGG | + | chr6_3:88192763-88192782 | Msa0963590:intron | 45.0% | |
| GGACGCTGCGATACAAATAA+CGG | + | chr6_3:88192793-88192812 | Msa0963590:intron | 45.0% | |
| TGGCTCAGCTGGAATAAATC+TGG | + | chr6_3:88193167-88193186 | Msa0963590:intron | 45.0% | |
| TGGACCACTTGATGCATCAA+GGG | + | chr6_3:88193187-88193206 | Msa0963590:intron | 45.0% | |
| GGGTGCAGATATGAAAAAGG+GGG | + | chr6_3:88193247-88193266 | Msa0963590:intron | 45.0% | |
| ATAGGACAAAACTGCAGGTG+GGG | + | chr6_3:88193287-88193306 | Msa0963590:intron | 45.0% | |
| ATATCGCCGTTACAGCGTTA+CGG | - | chr6_3:88193594-88193613 | None:intergenic | 45.0% | |
| !! | TTACAAATCGGTATCGGCAG+CGG | - | chr6_3:88193665-88193684 | None:intergenic | 45.0% |
| !! | CTGCCGATACCGATTTGTAA+CGG | + | chr6_3:88193665-88193684 | Msa0963590:intron | 45.0% |
| ! | AGTGTTTTCTTGCCTCATGG+AGG | + | chr6_3:88193929-88193948 | Msa0963590:CDS | 45.0% |
| ! | GTGTTTTCTTGCCTCATGGA+GGG | + | chr6_3:88193930-88193949 | Msa0963590:CDS | 45.0% |
| !! | GACTCGGATGTTTTAGGTGA+AGG | + | chr6_3:88194062-88194081 | Msa0963590:CDS | 45.0% |
| GGTGTGGGAGAAGAAATATG+TGG | + | chr6_3:88194104-88194123 | Msa0963590:CDS | 45.0% | |
| GTGGGAGAAGAAATATGTGG+TGG | + | chr6_3:88194107-88194126 | Msa0963590:CDS | 45.0% | |
| TGTGGTGGTTGCATGAAATC+TGG | + | chr6_3:88194122-88194141 | Msa0963590:CDS | 45.0% | |
| GTGGTTGCATGAAATCTGGT+AGG | + | chr6_3:88194126-88194145 | Msa0963590:intron | 45.0% | |
| TGATGTTACTCCATCTGCCA+TGG | - | chr6_3:88194207-88194226 | None:intergenic | 45.0% | |
| ! | CGTCCGTTGGATTTAAAGCT+CGG | - | chr6_3:88194549-88194568 | None:intergenic | 45.0% |
| GATTACGAATTCACGTCCGT+TGG | - | chr6_3:88194562-88194581 | None:intergenic | 45.0% | |
| CTCAAGTACACTCTTGAGCA+AGG | + | chr6_3:88194594-88194613 | Msa0963590:intron | 45.0% | |
| ! | GAATCATGGAGGTTTTCTGG+TGG | - | chr6_3:88194689-88194708 | None:intergenic | 45.0% |
| AAGAGTCGCTGAAGGAATCA+TGG | - | chr6_3:88194703-88194722 | None:intergenic | 45.0% | |
| ! | CATTGACTAAGCCTCCTAAC+AGG | + | chr6_3:88195231-88195250 | Msa0963590:intron | 45.0% |
| !! | CTCAAAGGAGGAAGTGTTTC+AGG | - | chr6_3:88195684-88195703 | None:intergenic | 45.0% |
| AAACACTTCCTCCTTTGAGC+TGG | + | chr6_3:88195685-88195704 | Msa0963590:intron | 45.0% | |
| AACACTTCCTCCTTTGAGCT+GGG | + | chr6_3:88195686-88195705 | Msa0963590:intron | 45.0% | |
| AGAATTTCCCAGCTCAAAGG+AGG | - | chr6_3:88195696-88195715 | None:intergenic | 45.0% | |
| ATTGCTAAAGGGATAGCTCG+AGG | + | chr6_3:88195723-88195742 | Msa0963590:intron | 45.0% | |
| TTGCTAAAGGGATAGCTCGA+GGG | + | chr6_3:88195724-88195743 | Msa0963590:intron | 45.0% | |
| GTCAAATGCAAGAGGGACAA+TGG | + | chr6_3:88195896-88195915 | Msa0963590:intron | 45.0% | |
| TATTGGAAATGGTTGGAGGG+AGG | + | chr6_3:88196000-88196019 | Msa0963590:intron | 45.0% | |
| ! | TGTGACTTGCATCAGCATGA+AGG | - | chr6_3:88196031-88196050 | None:intergenic | 45.0% |
| CTGATGCAAGTCACACAAGT+GGG | + | chr6_3:88196036-88196055 | Msa0963590:intron | 45.0% | |
| TGCGATCTCATCTTCTTCTG+GGG | - | chr6_3:88196132-88196151 | None:intergenic | 45.0% | |
| GCAAAGAGAATGACCATCGT+GGG | + | chr6_3:88196149-88196168 | Msa0963590:intron | 45.0% | |
| GAATGACCATCGTGGGTTTA+TGG | + | chr6_3:88196156-88196175 | Msa0963590:intron | 45.0% | |
| AATGCACCATAAACCCACGA+TGG | - | chr6_3:88196165-88196184 | None:intergenic | 45.0% | |
| GACATGTGATCCGGAAATGA+AGG | + | chr6_3:88196817-88196836 | Msa0963590:three_prime_UTR | 45.0% | |
| ATCCGGAAATGAAGGAATCG+AGG | + | chr6_3:88196825-88196844 | Msa0963590:three_prime_UTR | 45.0% | |
| TAGAATTGCCACAGAGAGAG+AGG | - | chr6_3:88197017-88197036 | None:intergenic | 45.0% | |
| !!! | ATTATTTTTTACATTATTTT+TGG | - | chr6_3:88193115-88193134 | None:intergenic | 5.0% |
| !! | AATGTAAAAAATAATAAAAA+TGG | + | chr6_3:88193120-88193139 | Msa0963590:intron | 5.0% |
| !! | TCGCTTTGGAGCGTTCTTCT+CGG | + | chr6_3:88192400-88192419 | Msa0963590:CDS | 50.0% |
| GAAGGTAGAAAAGGAAGCGG+AGG | - | chr6_3:88192429-88192448 | None:intergenic | 50.0% | |
| GGTGGACACAGCATTAGTAG+TGG | - | chr6_3:88192520-88192539 | None:intergenic | 50.0% | |
| GATGGCCGCAATAACTTGGT+TGG | - | chr6_3:88192611-88192630 | None:intergenic | 50.0% | |
| TGTCGCGATTTCGGCTGTAA+CGG | + | chr6_3:88192772-88192791 | Msa0963590:intron | 50.0% | |
| CTGGACCACTTGATGCATCA+AGG | + | chr6_3:88193186-88193205 | Msa0963590:intron | 50.0% | |
| GGACCACTTGATGCATCAAG+GGG | + | chr6_3:88193188-88193207 | Msa0963590:intron | 50.0% | |
| CGGCCGTTACAAATCGGTAT+CGG | - | chr6_3:88193671-88193690 | None:intergenic | 50.0% | |
| ACGGGACGTTACCGCAAAAA+CGG | - | chr6_3:88193691-88193710 | None:intergenic | 50.0% | |
| ! | CACGAGTTTTACCCTCCATG+AGG | - | chr6_3:88193944-88193963 | None:intergenic | 50.0% |
| ! | GTGAAGGATTTGAGGTTGGG+TGG | + | chr6_3:88194078-88194097 | Msa0963590:CDS | 50.0% |
| TCTCTTGCCGGAGAAATCCA+TGG | + | chr6_3:88194187-88194206 | Msa0963590:intron | 50.0% | |
| CCATCTGCCATGGATTTCTC+CGG | - | chr6_3:88194197-88194216 | None:intergenic | 50.0% | |
| AAGCTCGGAAATATCGCACG+AGG | - | chr6_3:88194534-88194553 | None:intergenic | 50.0% | |
| !! | GTTTTCTGGTGGGAACTGAG+AGG | - | chr6_3:88194678-88194697 | None:intergenic | 50.0% |
| AGTCGCTGAAGGAATCATGG+AGG | - | chr6_3:88194700-88194719 | None:intergenic | 50.0% | |
| AGCTGCATAAGAGTCGCTGA+AGG | - | chr6_3:88194711-88194730 | None:intergenic | 50.0% | |
| CAGCGACTCTTATGCAGCTT+AGG | + | chr6_3:88194712-88194731 | Msa0963590:intron | 50.0% | |
| !! | GCACAGAGAAGCATTTGAGC+AGG | + | chr6_3:88194888-88194907 | Msa0963590:intron | 50.0% |
| GCTGCCAAGCTATCTGCTTA+AGG | - | chr6_3:88195103-88195122 | None:intergenic | 50.0% | |
| TAAAGGGATAGCTCGAGGGT+TGG | + | chr6_3:88195728-88195747 | Msa0963590:intron | 50.0% | |
| GATATGTAGCTCCAGAGCTG+TGG | + | chr6_3:88195919-88195938 | Msa0963590:intron | 50.0% | |
| GCTGATGCAAGTCACACAAG+TGG | + | chr6_3:88196035-88196054 | Msa0963590:intron | 50.0% | |
| ! | TGTTGGCGGTGATTTGAGAC+CGG | + | chr6_3:88196094-88196113 | Msa0963590:intron | 50.0% |
| TCTGGGGAAATGACTTCACC+CGG | - | chr6_3:88196116-88196135 | None:intergenic | 50.0% | |
| CGCAAAGAGAATGACCATCG+TGG | + | chr6_3:88196148-88196167 | Msa0963590:intron | 50.0% | |
| GGAACACGTGACATGTGATC+CGG | + | chr6_3:88196808-88196827 | Msa0963590:three_prime_UTR | 50.0% | |
| GGACCCCTTGATGCATCAAG+TGG | - | chr6_3:88193194-88193213 | None:intergenic | 55.0% | |
| CTTCCTTCCTTGTTGACCGC+GGG | - | chr6_3:88193313-88193332 | None:intergenic | 55.0% | |
| CCTTCCTTCCTTGTTGACCG+CGG | - | chr6_3:88193314-88193333 | None:intergenic | 55.0% | |
| CGGTCAACAAGGAAGGAAGG+AGG | + | chr6_3:88193314-88193333 | Msa0963590:intron | 55.0% | |
| GAGTCCGTAACGGCGTTTCA+CGG | + | chr6_3:88193555-88193574 | Msa0963590:intron | 55.0% | |
| ACGACCGTGAAACGCCGTTA+CGG | - | chr6_3:88193562-88193581 | None:intergenic | 55.0% | |
| ACGGCGTTTCACGGTCGTAA+CGG | + | chr6_3:88193564-88193583 | Msa0963590:intron | 55.0% | |
| GGCGTTCCGTAACGCTGTAA+CGG | + | chr6_3:88193585-88193604 | Msa0963590:intron | 55.0% | |
| ! | GGATTTGAGGTTGGGTGGAG+TGG | + | chr6_3:88194083-88194102 | Msa0963590:CDS | 55.0% |
| CCGGAGAAATCCATGGCAGA+TGG | + | chr6_3:88194194-88194213 | Msa0963590:intron | 55.0% | |
| ! | AGCCTCCTAACAGGAAGTGC+AGG | + | chr6_3:88195240-88195259 | Msa0963590:intron | 55.0% |
| CACCTGCACTTCCTGTTAGG+AGG | - | chr6_3:88195245-88195264 | None:intergenic | 55.0% | |
| CTGCACCTGCACTTCCTGTT+AGG | - | chr6_3:88195248-88195267 | None:intergenic | 55.0% | |
| ! | GTTGGCGGTGATTTGAGACC+GGG | + | chr6_3:88196095-88196114 | Msa0963590:intron | 55.0% |
| TCCTCTGACCTCTCTCTCTG+TGG | + | chr6_3:88197006-88197025 | Msa0963590:three_prime_UTR | 55.0% | |
| CCGCGGTCAACAAGGAAGGA+AGG | + | chr6_3:88193311-88193330 | Msa0963590:intron | 60.0% | |
| TGAGGTTGGGTGGAGTGGTG+TGG | + | chr6_3:88194088-88194107 | Msa0963590:CDS | 60.0% | |
| GAGGTTGGGTGGAGTGGTGT+GGG | + | chr6_3:88194089-88194108 | Msa0963590:CDS | 60.0% | |
| GCTATCCGATGACAGCCCTG+TGG | + | chr6_3:88195473-88195492 | Msa0963590:intron | 60.0% | |
| TACGGCCACAGGGCTGTCAT+CGG | - | chr6_3:88195481-88195500 | None:intergenic | 60.0% | |
| GCCACAGAGAGAGAGGTCAG+AGG | - | chr6_3:88197010-88197029 | None:intergenic | 60.0% | |
| TCGCGATCGCGGTCGCGTTA+AGG | + | chr6_3:88192748-88192767 | Msa0963590:intron | 65.0% | |
| AAAACTGCAGGTGGGGCCCG+CGG | + | chr6_3:88193294-88193313 | Msa0963590:intron | 65.0% | |
| AACGGTCGCGGTCGCGATCG+CGG | + | chr6_3:88192737-88192756 | Msa0963590:intron | 70.0% | |
| GGGCCCGCGGTCAACAAGGA+AGG | + | chr6_3:88193307-88193326 | Msa0963590:intron | 70.0% | |
| GGTGGGGCCCGCGGTCAACA+AGG | + | chr6_3:88193303-88193322 | Msa0963590:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 88192372 | 88197117 | 88192372 | ID=Msa0963590;Name=Msa0963590 |
| chr6_3 | mRNA | 88192372 | 88197117 | 88192372 | ID=Msa0963590-mRNA-1;Parent=Msa0963590;Name=Msa0963590-mRNA-1;_AED=0.35;_eAED=0.38;_QI=0|0|0.33|1|0|0|3|607|169 |
| chr6_3 | exon | 88192372 | 88192615 | 88192372 | ID=Msa0963590-mRNA-1:exon:16042;Parent=Msa0963590-mRNA-1 |
| chr6_3 | exon | 88193922 | 88194143 | 88193922 | ID=Msa0963590-mRNA-1:exon:16043;Parent=Msa0963590-mRNA-1 |
| chr6_3 | exon | 88196467 | 88197117 | 88196467 | ID=Msa0963590-mRNA-1:exon:16044;Parent=Msa0963590-mRNA-1 |
| chr6_3 | CDS | 88192372 | 88192615 | 88192372 | ID=Msa0963590-mRNA-1:cds;Parent=Msa0963590-mRNA-1 |
| chr6_3 | CDS | 88193922 | 88194143 | 88193922 | ID=Msa0963590-mRNA-1:cds;Parent=Msa0963590-mRNA-1 |
| chr6_3 | CDS | 88196467 | 88196510 | 88196467 | ID=Msa0963590-mRNA-1:cds;Parent=Msa0963590-mRNA-1 |
| chr6_3 | three_prime_UTR | 88196511 | 88197117 | 88196511 | ID=Msa0963590-mRNA-1:three_prime_utr;Parent=Msa0963590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
