AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0963890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 72 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAGTAATTATGGAATATT+TGG 0.180018 6_3:-89388419 Msa0963890:five_prime_UTR
TGTGGTTAGCTTTGACTTTA+GGG 0.184467 6_3:-89388825 Msa0963890:five_prime_UTR
ATGTTGCAAAAGTATTTATT+AGG 0.216534 6_3:-89388666 Msa0963890:five_prime_UTR
TTGTGGTTAGCTTTGACTTT+AGG 0.227557 6_3:-89388826 Msa0963890:five_prime_UTR
ATCTTGCCCCAAACAGCTTA+TGG 0.274736 6_3:+89388513 None:intergenic
TATCATGATGGAACAATTAT+AGG 0.277634 6_3:+89389002 None:intergenic
CTCCTGATCATCACAGTAAA+AGG 0.283646 6_3:+89388441 None:intergenic
TGGATAATTCTGCTGGAAAA+AGG 0.285711 6_3:-89388313 Msa0963890:five_prime_UTR
TTTCCCTTCCTCTTCCTTGC+TGG 0.288095 6_3:-89388938 Msa0963890:five_prime_UTR
CTAGAAGCCATAAGCTGTTT+GGG 0.310222 6_3:-89388520 Msa0963890:five_prime_UTR
TGATCAGGAGTGAGTAATTA+TGG 0.311768 6_3:-89388428 Msa0963890:five_prime_UTR
AAATTGTTGCTGTGCTGTTT+GGG 0.331540 6_3:-89388551 Msa0963890:five_prime_UTR
AAGGAGGTAGAACTCAAGTT+AGG 0.334230 6_3:-89388788 Msa0963890:five_prime_UTR
TAAGTTACAGTTAAGCTGTT+TGG 0.340215 6_3:-89388152 Msa0963890:CDS
GGAAAGCTTTGGCAAGGATT+TGG 0.346050 6_3:+89389023 None:intergenic
GAGTACATCATGAGCTGAAT+TGG 0.347185 6_3:-89388114 Msa0963890:CDS
TGTTGCAAAAGTATTTATTA+GGG 0.356311 6_3:-89388665 Msa0963890:five_prime_UTR
ATTATGTATATTGGACTGTT+AGG 0.359865 6_3:-89388582 Msa0963890:five_prime_UTR
AACAGCTTAACTGTAACTTA+TGG 0.364660 6_3:+89388155 None:intergenic
CCGAATTCACTCCTTCCTCT+TGG 0.366416 6_3:-89388915 Msa0963890:five_prime_UTR
AGGTATAAGAAGTGATTAAT+TGG 0.370125 6_3:-89388734 Msa0963890:five_prime_UTR
GCTAGAAGCCATAAGCTGTT+TGG 0.379587 6_3:-89388521 Msa0963890:five_prime_UTR
GAAATTGTTGCTGTGCTGTT+TGG 0.379789 6_3:-89388552 Msa0963890:five_prime_UTR
TTTCCGAGTTCATTACTAAT+CGG 0.402134 6_3:+89388349 None:intergenic
GCATGCTTATGTTGCTGAAA+TGG 0.402854 6_3:-89388849 Msa0963890:five_prime_UTR
GACTTTAGGGACTGTATTTG+AGG 0.403112 6_3:-89388812 Msa0963890:five_prime_UTR
TGTTTGGAGAAAAGTGCTTA+TGG 0.405597 6_3:-89388136 Msa0963890:CDS
GAAATTTATATCCGATTTGA+AGG 0.410271 6_3:+89388380 None:intergenic
GATAATTGATTAATTTGAAG+TGG 0.420224 6_3:-89388983 Msa0963890:five_prime_UTR
ATCAAAACTCTTATAATCAT+AGG 0.424497 6_3:+89388211 None:intergenic
CCAAGAGGAAGGAGTGAATT+CGG 0.440352 6_3:+89388915 None:intergenic
GAACAATTATAGGAAAGCTT+TGG 0.442551 6_3:+89389012 None:intergenic
CTGTGAATGATTATGTATAT+TGG 0.443198 6_3:-89388591 Msa0963890:five_prime_UTR
TTGAAGTTGGATAATTCTGC+TGG 0.447928 6_3:-89388320 Msa0963890:five_prime_UTR
AAGTTTAATTCCCTTCAAAT+CGG 0.449463 6_3:-89388391 Msa0963890:five_prime_UTR
TGATACTTTGCCTGCTACTA+CGG 0.452591 6_3:-89388044 Msa0963890:CDS
AAATTATTATGATTGTTGTT+CGG 0.453250 6_3:-89388487 Msa0963890:five_prime_UTR
TCGGAAAGTGCGTTTGAAGT+TGG 0.455733 6_3:-89388333 Msa0963890:five_prime_UTR
AAGTTCATCTGTGTCACTCT+TGG 0.456761 6_3:-89386612 Msa0963890:CDS
GAGAGAGATTGGACAAGGGA+GGG 0.457922 6_3:+89389054 None:intergenic
TTCATCTGTGTCACTCTTGG+TGG 0.458234 6_3:-89386609 Msa0963890:CDS
ATTATGATTGTTGTTCGGAC+AGG 0.463586 6_3:-89388482 Msa0963890:five_prime_UTR
TTGAGAAATGAGCTAAATTG+TGG 0.464665 6_3:-89388268 Msa0963890:five_prime_UTR
AAATTAATCAATTATCATGA+TGG 0.465157 6_3:+89388990 None:intergenic
TGGATTTAGACTAGTTAGAA+AGG 0.467465 6_3:-89388248 Msa0963890:five_prime_UTR
AGAGAGATTGGACAAGGGAG+GGG 0.473116 6_3:+89389055 None:intergenic
TCTGTGTCACTCTTGGTGGT+AGG 0.473983 6_3:-89386605 None:intergenic
CTCGAGCAGCGTGGATAACT+CGG 0.479794 6_3:-89388089 Msa0963890:CDS
TGAGAGAGATTGGACAAGGG+AGG 0.484694 6_3:+89389053 None:intergenic
AAGTATCAACTATCCAATCT+TGG 0.488066 6_3:+89388059 None:intergenic
AGTACATCATGAGCTGAATT+GGG 0.494607 6_3:-89388113 Msa0963890:CDS
CGTGAGATAGAGAGAAAGAA+AGG 0.495618 6_3:+89389082 None:intergenic
ATAATTGATTAATTTGAAGT+GGG 0.496711 6_3:-89388982 Msa0963890:five_prime_UTR
GGACTGTATTTGAGGAAAGG+AGG 0.500005 6_3:-89388804 Msa0963890:five_prime_UTR
AGGAGGTAGAACTCAAGTTA+GGG 0.514168 6_3:-89388787 Msa0963890:five_prime_UTR
CCAACTGCTTCCGTAGTAGC+AGG 0.517506 6_3:+89388034 None:intergenic
GAATTCGGCCAGCAAGGAAG+AGG 0.534414 6_3:+89388930 None:intergenic
TAGGGACTGTATTTGAGGAA+AGG 0.536169 6_3:-89388807 Msa0963890:five_prime_UTR
TTATGTTGCTGAAATGGTTG+TGG 0.542434 6_3:-89388843 Msa0963890:five_prime_UTR
TGTTGCTGTGCTGTTTGGGA+TGG 0.543910 6_3:-89388547 Msa0963890:five_prime_UTR
ATTATAGGAAAGCTTTGGCA+AGG 0.546118 6_3:+89389017 None:intergenic
AGGAGTGAATTCGGCCAGCA+AGG 0.558853 6_3:+89388924 None:intergenic
CAACTTGGAATTGAAGATGT+AGG 0.565947 6_3:-89388757 Msa0963890:five_prime_UTR
CCTGCTACTACGGAAGCAGT+TGG 0.573503 6_3:-89388034 Msa0963890:CDS
AAATTTATATCCGATTTGAA+GGG 0.575743 6_3:+89388381 None:intergenic
TCGGCCAGCAAGGAAGAGGA+AGG 0.597065 6_3:+89388934 None:intergenic
ATTCCGATTAGTAATGAACT+CGG 0.629078 6_3:-89388352 Msa0963890:five_prime_UTR
AAGCAGTTGGAGAGAAAATG+TGG 0.630940 6_3:-89388021 Msa0963890:CDS
CTTGGAATTGAAGATGTAGG+AGG 0.638210 6_3:-89388754 Msa0963890:five_prime_UTR
TAGAAGCCATAAGCTGTTTG+GGG 0.639981 6_3:-89388519 Msa0963890:five_prime_UTR
CGGCCAGCAAGGAAGAGGAA+GGG 0.652342 6_3:+89388935 None:intergenic
GAATTGGGACTCGAGCAGCG+TGG 0.739005 6_3:-89388098 Msa0963890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATTAT+TGG - chr6_3:89387762-89387781 Msa0963890:intron 0.0%
!! TAATAATAATTAAAATAAGC+GGG + chr6_3:89387752-89387771 None:intergenic 10.0%
!!! ATATAAAACATTTTCAATTA+GGG + chr6_3:89388341-89388360 None:intergenic 10.0%
!!! AATATAAAACATTTTCAATT+AGG + chr6_3:89388342-89388361 None:intergenic 10.0%
!! AAATTAATCAATTATCATGA+TGG + chr6_3:89386724-89386743 None:intergenic 15.0%
!!! ATAATTGATTAATTTGAAGT+GGG - chr6_3:89386729-89386748 Msa0963890:intron 15.0%
!!! TTTTTTTTTTTGAGATTTGA+GGG - chr6_3:89386836-89386855 Msa0963890:intron 15.0%
!!! AAATTATTATGATTGTTGTT+CGG - chr6_3:89387224-89387243 Msa0963890:intron 15.0%
!! TATGTCATTATTTACTAAAA+TGG - chr6_3:89387810-89387829 Msa0963890:intron 15.0%
!! ATGTCATTATTTACTAAAAT+GGG - chr6_3:89387811-89387830 Msa0963890:intron 15.0%
!! TTTAGTGAAAATAATCAAAT+GGG + chr6_3:89388475-89388494 None:intergenic 15.0%
!! ATTTAGTGAAAATAATCAAA+TGG + chr6_3:89388476-89388495 None:intergenic 15.0%
!! TTAGTGAAAATAAACAAAAT+GGG + chr6_3:89388636-89388655 None:intergenic 15.0%
!! TTTAGTGAAAATAAACAAAA+TGG + chr6_3:89388637-89388656 None:intergenic 15.0%
!!! GTTTTCTATATTTTCTTTAA+AGG - chr6_3:89388661-89388680 Msa0963890:five_prime_UTR 15.0%
!!! AGAAAAATCTCATTTTGTTT+GGG + chr6_3:89386609-89386628 None:intergenic 20.0%
!!! GATAATTGATTAATTTGAAG+TGG - chr6_3:89386728-89386747 Msa0963890:intron 20.0%
!!! GTTTTTTTTTTTGAGATTTG+AGG - chr6_3:89386835-89386854 Msa0963890:intron 20.0%
!!! ATGTTGCAAAAGTATTTATT+AGG - chr6_3:89387045-89387064 Msa0963890:intron 20.0%
!!! TGTTGCAAAAGTATTTATTA+GGG - chr6_3:89387046-89387065 Msa0963890:intron 20.0%
!!! AAATTTATATCCGATTTGAA+GGG + chr6_3:89387333-89387352 None:intergenic 20.0%
!! ATCAAAACTCTTATAATCAT+AGG + chr6_3:89387503-89387522 None:intergenic 20.0%
!! TGTCATTATTTACTAAAATG+GGG - chr6_3:89387812-89387831 Msa0963890:intron 20.0%
!!! TTGGATTTGAATTTGAATTT+TGG - chr6_3:89387903-89387922 Msa0963890:intron 20.0%
!! ATAAAGTAGAGAAATTGAAA+CGG - chr6_3:89387942-89387961 Msa0963890:intron 20.0%
!!! GAATGATGTTTTGAAAATTA+CGG - chr6_3:89388188-89388207 Msa0963890:CDS 20.0%
!!! AGGTTATTTATCAAGATTTT+CGG - chr6_3:89388681-89388700 Msa0963890:five_prime_UTR 20.0%
!!! TTTCGGCAATATATTTTTAA+AGG - chr6_3:89388733-89388752 Msa0963890:five_prime_UTR 20.0%
!!! AAGGCTTTTATTTTGATTTT+CGG - chr6_3:89388752-89388771 Msa0963890:five_prime_UTR 20.0%
!!! TTTCGGCAATTTATTTTAAA+AGG - chr6_3:89388769-89388788 Msa0963890:five_prime_UTR 20.0%
!! ATATATACTTCCAATCAAAT+AGG + chr6_3:89388848-89388867 None:intergenic 20.0%
!!! CAGATTATTAGAATTTTAGA+CGG - chr6_3:89388900-89388919 Msa0963890:five_prime_UTR 20.0%
!! GAGAAAAATCTCATTTTGTT+TGG + chr6_3:89386610-89386629 None:intergenic 25.0%
!! TATCATGATGGAACAATTAT+AGG + chr6_3:89386712-89386731 None:intergenic 25.0%
! AACATTCAAAAAAATCCAAG+AGG + chr6_3:89386814-89386833 None:intergenic 25.0%
!!! TCTTGGATTTTTTTGAATGT+TGG - chr6_3:89386813-89386832 Msa0963890:intron 25.0%
! AGGTATAAGAAGTGATTAAT+TGG - chr6_3:89386977-89386996 Msa0963890:intron 25.0%
! CTGTGAATGATTATGTATAT+TGG - chr6_3:89387120-89387139 Msa0963890:intron 25.0%
! ATTATGTATATTGGACTGTT+AGG - chr6_3:89387129-89387148 Msa0963890:intron 25.0%
! GTGAGTAATTATGGAATATT+TGG - chr6_3:89387292-89387311 Msa0963890:intron 25.0%
! AAGTTTAATTCCCTTCAAAT+CGG - chr6_3:89387320-89387339 Msa0963890:intron 25.0%
!! GAAATTTATATCCGATTTGA+AGG + chr6_3:89387334-89387353 None:intergenic 25.0%
!!! TTTGAAATATGCGTTTTGAA+AGG - chr6_3:89388019-89388038 Msa0963890:CDS 25.0%
! TTTCGTTATGTTGTGAAATA+TGG - chr6_3:89388146-89388165 Msa0963890:CDS 25.0%
! TTGAAGTATACCTATTTGAT+TGG - chr6_3:89388835-89388854 Msa0963890:five_prime_UTR 25.0%
!! TTGGAAGTATATATAATGTG+TGG - chr6_3:89388854-89388873 Msa0963890:five_prime_UTR 25.0%
GAACAATTATAGGAAAGCTT+TGG + chr6_3:89386702-89386721 None:intergenic 30.0%
TTCAAAAAAATCCAAGAGGA+AGG + chr6_3:89386810-89386829 None:intergenic 30.0%
ATTCCGATTAGTAATGAACT+CGG - chr6_3:89387359-89387378 Msa0963890:intron 30.0%
TTTCCGAGTTCATTACTAAT+CGG + chr6_3:89387365-89387384 None:intergenic 30.0%
TTGAGAAATGAGCTAAATTG+TGG - chr6_3:89387443-89387462 Msa0963890:intron 30.0%
! TGGATTTAGACTAGTTAGAA+AGG - chr6_3:89387463-89387482 Msa0963890:intron 30.0%
!! AAGAGTTTTGATCGAAGTTT+TGG - chr6_3:89387511-89387530 Msa0963890:intron 30.0%
!!! ATCGAAGTTTTGGATGAATT+CGG - chr6_3:89387521-89387540 Msa0963890:intron 30.0%
AACAGCTTAACTGTAACTTA+TGG + chr6_3:89387559-89387578 None:intergenic 30.0%
TAAGTTACAGTTAAGCTGTT+TGG - chr6_3:89387559-89387578 Msa0963890:intron 30.0%
AAGTATCAACTATCCAATCT+TGG + chr6_3:89387655-89387674 None:intergenic 30.0%
ATGACGAGGAAGATATTTAA+AGG + chr6_3:89387846-89387865 None:intergenic 30.0%
GTCATCGTTATATAAGTTCA+TGG - chr6_3:89387861-89387880 Msa0963890:intron 30.0%
CGTTATATAAGTTCATGGAT+TGG - chr6_3:89387866-89387885 Msa0963890:intron 30.0%
!! ATAAGTTCATGGATTGGATT+TGG - chr6_3:89387872-89387891 Msa0963890:intron 30.0%
! TTTTGATATGTTGTGAAACG+TGG - chr6_3:89387995-89388014 Msa0963890:intron 30.0%
!! ATCTTAATTTGTACGCGATT+TGG - chr6_3:89388046-89388065 Msa0963890:CDS 30.0%
ACCTAGTAGTGATTTCAATT+AGG - chr6_3:89388235-89388254 Msa0963890:five_prime_UTR 30.0%
ACCTAATTGAAATCACTACT+AGG + chr6_3:89388239-89388258 None:intergenic 30.0%
! TTTTCGGCAATATCTTTTAG+AGG - chr6_3:89388697-89388716 Msa0963890:five_prime_UTR 30.0%
! GAGGCTCTTATTATGATTTT+CGG - chr6_3:89388716-89388735 Msa0963890:five_prime_UTR 30.0%
TCTTCATGTCTTTACAATGT+TGG - chr6_3:89388804-89388823 Msa0963890:five_prime_UTR 30.0%
!! TTTTGAGAGAGATTGGACAA+GGG + chr6_3:89386664-89386683 None:intergenic 35.0%
!! ATTTTGAGAGAGATTGGACA+AGG + chr6_3:89386665-89386684 None:intergenic 35.0%
!! TGGTGAATTTTGAGAGAGAT+TGG + chr6_3:89386671-89386690 None:intergenic 35.0%
! ATTATAGGAAAGCTTTGGCA+AGG + chr6_3:89386697-89386716 None:intergenic 35.0%
TTATGTTGCTGAAATGGTTG+TGG - chr6_3:89386868-89386887 Msa0963890:intron 35.0%
!! TTGTGGTTAGCTTTGACTTT+AGG - chr6_3:89386885-89386904 Msa0963890:intron 35.0%
!! TGTGGTTAGCTTTGACTTTA+GGG - chr6_3:89386886-89386905 Msa0963890:intron 35.0%
CAACTTGGAATTGAAGATGT+AGG - chr6_3:89386954-89386973 Msa0963890:intron 35.0%
!! AAATTGTTGCTGTGCTGTTT+GGG - chr6_3:89387160-89387179 Msa0963890:intron 35.0%
! ATTATGATTGTTGTTCGGAC+AGG - chr6_3:89387229-89387248 Msa0963890:intron 35.0%
! TACCTTTTACTGTGATGATC+AGG - chr6_3:89387268-89387287 Msa0963890:intron 35.0%
TGATCAGGAGTGAGTAATTA+TGG - chr6_3:89387283-89387302 Msa0963890:intron 35.0%
TTGAAGTTGGATAATTCTGC+TGG - chr6_3:89387391-89387410 Msa0963890:intron 35.0%
TGGATAATTCTGCTGGAAAA+AGG - chr6_3:89387398-89387417 Msa0963890:intron 35.0%
!! TGTTTGGAGAAAAGTGCTTA+TGG - chr6_3:89387575-89387594 Msa0963890:intron 35.0%
AGTACATCATGAGCTGAATT+GGG - chr6_3:89387598-89387617 Msa0963890:intron 35.0%
GAACTTATATAACGATGACG+AGG + chr6_3:89387860-89387879 None:intergenic 35.0%
!! TCATGGATTGGATTTGGATT+CGG - chr6_3:89387878-89387897 Msa0963890:intron 35.0%
ATTGGATTTGGATTCGGATT+TGG - chr6_3:89387884-89387903 Msa0963890:intron 35.0%
!!! ACGCGATTTGGATTTTGATT+TGG - chr6_3:89388058-89388077 Msa0963890:CDS 35.0%
! GTGGATTTTCATGCGTATAA+AGG - chr6_3:89388873-89388892 Msa0963890:five_prime_UTR 35.0%
AAATGAAAGAGTAAGCCACA+AGG + chr6_3:89389025-89389044 None:intergenic 35.0%
CGTGAGATAGAGAGAAAGAA+AGG + chr6_3:89386632-89386651 None:intergenic 40.0%
GCATGCTTATGTTGCTGAAA+TGG - chr6_3:89386862-89386881 Msa0963890:intron 40.0%
! GACTTTAGGGACTGTATTTG+AGG - chr6_3:89386899-89386918 Msa0963890:intron 40.0%
TAGGGACTGTATTTGAGGAA+AGG - chr6_3:89386904-89386923 Msa0963890:intron 40.0%
AAGGAGGTAGAACTCAAGTT+AGG - chr6_3:89386923-89386942 Msa0963890:intron 40.0%
AGGAGGTAGAACTCAAGTTA+GGG - chr6_3:89386924-89386943 Msa0963890:intron 40.0%
! AGTTAGGGTTTTGCACAACT+TGG - chr6_3:89386939-89386958 Msa0963890:intron 40.0%
CTTGGAATTGAAGATGTAGG+AGG - chr6_3:89386957-89386976 Msa0963890:intron 40.0%
! GAAATTGTTGCTGTGCTGTT+TGG - chr6_3:89387159-89387178 Msa0963890:intron 40.0%
CTAGAAGCCATAAGCTGTTT+GGG - chr6_3:89387191-89387210 Msa0963890:intron 40.0%
TAGAAGCCATAAGCTGTTTG+GGG - chr6_3:89387192-89387211 Msa0963890:intron 40.0%
!! TTCGGACAGGTTCTGTTTTT+GGG - chr6_3:89387242-89387261 Msa0963890:intron 40.0%
CTCCTGATCATCACAGTAAA+AGG + chr6_3:89387273-89387292 None:intergenic 40.0%
TTCTGCTGGAAAAAGGCTTA+CGG - chr6_3:89387405-89387424 Msa0963890:intron 40.0%
GAGTACATCATGAGCTGAAT+TGG - chr6_3:89387597-89387616 Msa0963890:intron 40.0%
ACTCGGAAAAATGCCAAGAT+TGG - chr6_3:89387639-89387658 Msa0963890:intron 40.0%
TGATACTTTGCCTGCTACTA+CGG - chr6_3:89387667-89387686 Msa0963890:intron 40.0%
AAGCAGTTGGAGAGAAAATG+TGG - chr6_3:89387690-89387709 Msa0963890:intron 40.0%
GGTAGAATTACCCCATTAGA+TGG - chr6_3:89388256-89388275 Msa0963890:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr6_3:89388378-89388397 Msa0963890:five_prime_UTR 40.0%
GAAAAGAGCTATCCGTTAGA+TGG - chr6_3:89388378-89388397 Msa0963890:five_prime_UTR 40.0%
AACTAGAAGGGAAACACACA+TGG + chr6_3:89388975-89388994 None:intergenic 40.0%
ATGTGTGTTTCCCTTCTAGT+TGG - chr6_3:89388974-89388993 Msa0963890:five_prime_UTR 40.0%
! AAGTTCATCTGTGTCACTCT+TGG - chr6_3:89389099-89389118 Msa0963890:five_prime_UTR 40.0%
! GGAAAGCTTTGGCAAGGATT+TGG + chr6_3:89386691-89386710 None:intergenic 45.0%
CCAAGAGGAAGGAGTGAATT+CGG + chr6_3:89386799-89386818 None:intergenic 45.0%
GGACTGTATTTGAGGAAAGG+AGG - chr6_3:89386907-89386926 Msa0963890:intron 45.0%
GCTAGAAGCCATAAGCTGTT+TGG - chr6_3:89387190-89387209 Msa0963890:intron 45.0%
ATCTTGCCCCAAACAGCTTA+TGG + chr6_3:89387201-89387220 None:intergenic 45.0%
! GTTCGGACAGGTTCTGTTTT+TGG - chr6_3:89387241-89387260 Msa0963890:intron 45.0%
! TCGGAAAGTGCGTTTGAAGT+TGG - chr6_3:89387378-89387397 Msa0963890:intron 45.0%
TCTGCTGGAAAAAGGCTTAC+GGG - chr6_3:89387406-89387425 Msa0963890:intron 45.0%
GGTTATAATGACGACGACCT+AGG - chr6_3:89388209-89388228 Msa0963890:CDS 45.0%
AATCACTACTAGGTGCACCT+AGG + chr6_3:89388229-89388248 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr6_3:89388287-89388306 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr6_3:89388288-89388307 None:intergenic 45.0%
TAATGGTGGCCTATCCATAG+GGG + chr6_3:89388409-89388428 None:intergenic 45.0%
CTAATGGTGGCCTATCCATA+GGG + chr6_3:89388410-89388429 None:intergenic 45.0%
TAATGGTGGCCTTTCCATAG+GGG + chr6_3:89388287-89388306 None:intergenic 45.0%
CTAATGGTGGCCTTTCCATA+GGG + chr6_3:89388288-89388307 None:intergenic 45.0%
! TGTGTTTCCCTTCTAGTTGG+TGG - chr6_3:89388977-89388996 Msa0963890:five_prime_UTR 45.0%
ACAACCACCACCAACTAGAA+GGG + chr6_3:89388987-89389006 None:intergenic 45.0%
AACAACCACCACCAACTAGA+AGG + chr6_3:89388988-89389007 None:intergenic 45.0%
TGTCTCTCACTAAGTCCTTG+TGG - chr6_3:89389007-89389026 Msa0963890:five_prime_UTR 45.0%
! TTCATCTGTGTCACTCTTGG+TGG - chr6_3:89389102-89389121 Msa0963890:five_prime_UTR 45.0%
!! ATAATAATAATTAAAATAAG+CGG + chr6_3:89387753-89387772 None:intergenic 5.0%
AGAGAGATTGGACAAGGGAG+GGG + chr6_3:89386659-89386678 None:intergenic 50.0%
GAGAGAGATTGGACAAGGGA+GGG + chr6_3:89386660-89386679 None:intergenic 50.0%
TGAGAGAGATTGGACAAGGG+AGG + chr6_3:89386661-89386680 None:intergenic 50.0%
TTTCCCTTCCTCTTCCTTGC+TGG - chr6_3:89386773-89386792 Msa0963890:intron 50.0%
CCGAATTCACTCCTTCCTCT+TGG - chr6_3:89386796-89386815 Msa0963890:intron 50.0%
!! TGTTGCTGTGCTGTTTGGGA+TGG - chr6_3:89387164-89387183 Msa0963890:intron 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr6_3:89388289-89388308 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr6_3:89388286-89388305 Msa0963890:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr6_3:89388289-89388308 Msa0963890:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr6_3:89388304-89388323 None:intergenic 50.0%
AGGAGAGGGCTATCAATGAG+AGG - chr6_3:89388309-89388328 Msa0963890:five_prime_UTR 50.0%
CCTAATGGTGGCCTATCCAT+AGG + chr6_3:89388411-89388430 None:intergenic 50.0%
CCTATGGATAGGCCACCATT+AGG - chr6_3:89388408-89388427 Msa0963890:five_prime_UTR 50.0%
ATGGATAGGCCACCATTAGG+AGG - chr6_3:89388411-89388430 Msa0963890:five_prime_UTR 50.0%
TGATAGCCCTCTCCTCCTAA+TGG + chr6_3:89388304-89388323 None:intergenic 50.0%
CCTAATGGTGGCCTTTCCAT+AGG + chr6_3:89388289-89388308 None:intergenic 50.0%
CCTATGGAAAGGCCACCATT+AGG - chr6_3:89388286-89388305 Msa0963890:five_prime_UTR 50.0%
ATGGAAAGGCCACCATTAGG+AGG - chr6_3:89388289-89388308 Msa0963890:five_prime_UTR 50.0%
!! GTTTCCCTTCTAGTTGGTGG+TGG - chr6_3:89388980-89388999 Msa0963890:five_prime_UTR 50.0%
GAATTCGGCCAGCAAGGAAG+AGG + chr6_3:89386784-89386803 None:intergenic 55.0%
AGGAGTGAATTCGGCCAGCA+AGG + chr6_3:89386790-89386809 None:intergenic 55.0%
CTCGAGCAGCGTGGATAACT+CGG - chr6_3:89387622-89387641 Msa0963890:intron 55.0%
CCAACTGCTTCCGTAGTAGC+AGG + chr6_3:89387680-89387699 None:intergenic 55.0%
CCTGCTACTACGGAAGCAGT+TGG - chr6_3:89387677-89387696 Msa0963890:intron 55.0%
TAGGGGCGGCTCCATCTAAT+GGG + chr6_3:89388270-89388289 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+TGG + chr6_3:89388271-89388290 None:intergenic 55.0%
ATTAGATGGAGCCGCCCCTA+TGG - chr6_3:89388270-89388289 Msa0963890:five_prime_UTR 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr6_3:89388294-89388313 Msa0963890:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr6_3:89388295-89388314 Msa0963890:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr6_3:89388301-89388320 None:intergenic 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr6_3:89388271-89388290 None:intergenic 55.0%
TAGGCCACCATTAGGAGGAG+AGG - chr6_3:89388416-89388435 Msa0963890:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr6_3:89388295-89388314 Msa0963890:five_prime_UTR 55.0%
TAGCCCTCTCCTCCTAATGG+TGG + chr6_3:89388301-89388320 None:intergenic 55.0%
GGAGAGGGCTATCAACGAGA+TGG - chr6_3:89388432-89388451 Msa0963890:five_prime_UTR 55.0%
ATAGGGGCGGCTCCATCTAA+CGG + chr6_3:89388271-89388290 None:intergenic 55.0%
AAGGCCACCATTAGGAGGAG+AGG - chr6_3:89388294-89388313 Msa0963890:five_prime_UTR 55.0%
AGGCCACCATTAGGAGGAGA+GGG - chr6_3:89388295-89388314 Msa0963890:five_prime_UTR 55.0%
TGAGAGCCCTCTCCTCCTAA+TGG + chr6_3:89388587-89388606 None:intergenic 55.0%
CGGCCAGCAAGGAAGAGGAA+GGG + chr6_3:89386779-89386798 None:intergenic 60.0%
TCGGCCAGCAAGGAAGAGGA+AGG + chr6_3:89386780-89386799 None:intergenic 60.0%
GAATTGGGACTCGAGCAGCG+TGG - chr6_3:89387613-89387632 Msa0963890:intron 60.0%
AGGGGCGGCTCCATCTAATG+GGG + chr6_3:89388269-89388288 None:intergenic 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr6_3:89388275-89388294 Msa0963890:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr6_3:89388284-89388303 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr6_3:89388392-89388411 Msa0963890:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAT+AGG - chr6_3:89388397-89388416 Msa0963890:five_prime_UTR 60.0%
TGGTGGCCTATCCATAGGGG+CGG + chr6_3:89388406-89388425 None:intergenic 60.0%
GTTAGATGGAGCCGCCCCTA+TGG - chr6_3:89388392-89388411 Msa0963890:five_prime_UTR 60.0%
ATGGAGCCGCCCCTATGGAA+AGG - chr6_3:89388275-89388294 Msa0963890:five_prime_UTR 60.0%
TGGTGGCCTTTCCATAGGGG+CGG + chr6_3:89388284-89388303 None:intergenic 60.0%
GAGCCCTCTCCTCCTAATGG+TGG + chr6_3:89388584-89388603 None:intergenic 60.0%
GGAGAGGGCTCTCAACGAGA+TGG - chr6_3:89388593-89388612 Msa0963890:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 89386606 89389127 89386606 ID=Msa0963890;Name=Msa0963890
chr6_3 mRNA 89386606 89389127 89386606 ID=Msa0963890-mRNA-1;Parent=Msa0963890;Name=Msa0963890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=897|1|0.5|1|1|1|2|0|97
chr6_3 exon 89386606 89386673 89386606 ID=Msa0963890-mRNA-1:exon:16162;Parent=Msa0963890-mRNA-1
chr6_3 exon 89388005 89389127 89388005 ID=Msa0963890-mRNA-1:exon:16161;Parent=Msa0963890-mRNA-1
chr6_3 five_prime_UTR 89388231 89389127 89388231 ID=Msa0963890-mRNA-1:five_prime_utr;Parent=Msa0963890-mRNA-1
chr6_3 CDS 89388005 89388230 89388005 ID=Msa0963890-mRNA-1:cds;Parent=Msa0963890-mRNA-1
chr6_3 CDS 89386606 89386673 89386606 ID=Msa0963890-mRNA-1:cds;Parent=Msa0963890-mRNA-1
Gene Sequence

>Msa0963890

ATGATTATAAGAGTTTTGATCGAAGTTTTGGATGAATTCGGAACACGCAGAAGCCATAAGTTACAGTTAAGCTGTTTGGAGAAAAGTGCTTATGGAGTACATCATGAGCTGAATTGGGACTCGAGCAGCGTGGATAACTCGGAAAAATGCCAAGATTGGATAGTTGATACTTTGCCTGCTACTACGGAAGCAGTTGGAGAGAAAATGTGGTTGATTCGACATAGCTATTTTCAAGCAGCTAAGTATAAAGATGATAGTAGACTTGAAGTTCATCTGTGTCACTCTTGGTGGTAG
Protein sequence

>Msa0963890

MIIRVLIEVLDEFGTRRSHKLQLSCLEKSAYGVHHELNWDSSSVDNSEKCQDWIVDTLPATTEAVGEKMWLIRHSYFQAAKYKDDSRLEVHLCHSWW*