AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964630 MtrunA17_Chr6g0484931 97.564 698 17 0 1 698 1 698 0.0 1414
Msa0964630 MtrunA17_Chr8g0390731 74.037 701 171 5 2 693 1 699 0.0 1040
Msa0964630 MtrunA17_Chr7g0250081 25.310 403 249 14 270 657 22 387 6.59e-18 86.7
Msa0964630 MtrunA17_Chr5g0438751 24.484 339 194 11 292 614 43 335 2.34e-15 79.0
Msa0964630 MtrunA17_Chr3g0120041 34.043 141 81 4 274 408 36 170 8.67e-15 75.1
Msa0964630 MtrunA17_Chr6g0459381 33.333 123 72 2 292 404 47 169 5.99e-14 72.8
Msa0964630 MtrunA17_Chr6g0459361 30.370 135 83 3 292 416 47 180 8.26e-14 72.0
Msa0964630 MtrunA17_Chr3g0119931 30.822 146 94 3 270 408 21 166 1.31e-13 71.2
Msa0964630 MtrunA17_Chr6g0462811 28.276 145 91 2 286 417 39 183 8.63e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964630 AT1G73920.1 67.149 691 216 5 2 683 1 689 0.0 934
Msa0964630 AT1G18460.1 67.599 679 215 5 2 676 1 678 0.0 912
Msa0964630 AT1G73920.2 65.595 622 203 5 71 683 1 620 0.0 815
Msa0964630 AT5G14180.1 25.897 390 217 14 292 654 52 396 1.21e-19 92.4
Msa0964630 AT5G14180.3 35.714 126 71 2 292 407 52 177 2.28e-17 84.0
Msa0964630 AT5G14180.5 35.714 126 71 2 292 407 52 177 2.72e-17 83.6
Msa0964630 AT2G15230.1 30.534 131 86 2 292 417 33 163 6.97e-14 74.7

Find 155 sgRNAs with CRISPR-Local

Find 543 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACTTTGATTCTGATTC+TGG 0.083657 6_3:-91446005 Msa0964630:five_prime_UTR
CATATTCTTGGATTTGTTAT+TGG 0.160265 6_3:-91445956 Msa0964630:five_prime_UTR
CCTCCAAATGAGAAAGAAAA+TGG 0.206110 6_3:+91439304 None:intergenic
TCAAATTGGGTTGGAGTTCT+AGG 0.232000 6_3:-91439971 Msa0964630:CDS
CTATCTCCCTCAAAAGCTTT+TGG 0.241599 6_3:-91443753 Msa0964630:CDS
TGATGGATACATTCTTCTTT+TGG 0.284998 6_3:-91443420 Msa0964630:CDS
CAGGAGCCATAAAAGTTAAT+AGG 0.317849 6_3:+91440140 None:intergenic
TGTGCAATTTCACATAGTTT+AGG 0.325533 6_3:-91440295 Msa0964630:CDS
TAGTGTCTCTTTACCATTGA+AGG 0.327552 6_3:+91439722 None:intergenic
CAGAAAGTTCATGGATGAAT+TGG 0.334442 6_3:+91444433 None:intergenic
TCTCGGAAACTTTCGTGGTT+TGG 0.338900 6_3:-91440587 Msa0964630:CDS
TTCACTTTGATTCTGATTCT+GGG 0.348861 6_3:-91446004 Msa0964630:five_prime_UTR
TCGTTCAGTTGGGTATCTAA+TGG 0.352967 6_3:-91440747 Msa0964630:intron
ACAATAGGCATCAGATGAAT+TGG 0.356512 6_3:-91444287 Msa0964630:CDS
ACTTCCTTAACCTCATTGAT+TGG 0.356792 6_3:-91439149 Msa0964630:three_prime_UTR
TCGGTTTCCTCCTCGATATC+AGG 0.362479 6_3:+91440340 None:intergenic
TCAACCAAACGTTGCATCAT+AGG 0.363541 6_3:+91445877 None:intergenic
TTGGCGGAGACAGCTCAAAT+TGG 0.364713 6_3:-91439985 Msa0964630:CDS
AAAATACTTGAAGGTATTCA+TGG 0.366247 6_3:-91444701 Msa0964630:CDS
CTCATTTACATGCATATAAG+AGG 0.369236 6_3:-91444137 Msa0964630:CDS
TTCACCTGAGCCTTTGGACT+TGG 0.369633 6_3:-91439813 Msa0964630:CDS
ATTCCTGTTGATCTTGTTGC+TGG 0.373816 6_3:-91439767 Msa0964630:CDS
CAGAATCCACAGAAAGTTCA+TGG 0.379887 6_3:+91444424 None:intergenic
TTAGCTTGATGCTTTGAATT+CGG 0.384662 6_3:+91439572 None:intergenic
ACACGACAAAATAAGCTAAC+TGG 0.389230 6_3:+91444196 None:intergenic
TTACGGTTCACCTGAGCCTT+TGG 0.391024 6_3:-91439819 Msa0964630:CDS
TGGGTATCTAATGGTGTTGT+TGG 0.397650 6_3:-91440738 Msa0964630:CDS
TGATCATAGGCTGCAAAAGC+TGG 0.399372 6_3:+91440711 None:intergenic
TTATACAGTCGTTGTCGAAC+TGG 0.403548 6_3:-91439483 Msa0964630:three_prime_UTR
AAAATGATTCTACAAAGGTT+TGG 0.406399 6_3:-91439084 Msa0964630:three_prime_UTR
TAAGCCTATGATGCAACGTT+TGG 0.409906 6_3:-91445881 Msa0964630:exon
TTACCCAATCAATGAGGTTA+AGG 0.410325 6_3:+91439145 None:intergenic
ACTTTCGTGGTTTGGTTTCA+AGG 0.414993 6_3:-91440579 Msa0964630:CDS
AAATAACAAACCTTGATCAT+AGG 0.415943 6_3:+91440698 None:intergenic
CACTTTGATTCATTCATTGT+TGG 0.421673 6_3:-91439372 Msa0964630:three_prime_UTR
TGCTTGTCTTTAAGTTAGCT+CGG 0.427376 6_3:-91440066 Msa0964630:CDS
AAATCCAAAGTAAGATGTAT+TGG 0.427748 6_3:+91444262 None:intergenic
CTTCCTTAACCTCATTGATT+GGG 0.429650 6_3:-91439148 Msa0964630:three_prime_UTR
GGATCCAATACATCTTACTT+TGG 0.434141 6_3:-91444266 Msa0964630:CDS
TTGTATCATGTATGTATGTA+TGG 0.434569 6_3:-91439220 Msa0964630:three_prime_UTR
AAGTTCAGAATGTTCGATTA+CGG 0.437987 6_3:-91439866 Msa0964630:CDS
TGTCCAGCAACAAGATCAAC+AGG 0.438552 6_3:+91439764 None:intergenic
ACTTGAAGGTATTCATGGTT+GGG 0.442818 6_3:-91444696 Msa0964630:CDS
GTATCTAGCAAAAGCGGCTT+CGG 0.445272 6_3:+91444308 None:intergenic
AATCAAAGAGTTGAAAAGTC+AGG 0.450322 6_3:-91439551 Msa0964630:CDS
CAAAGTTATAAGACCTTCAA+TGG 0.454362 6_3:-91439735 Msa0964630:CDS
CCCTAGCGTGGCTGTAGAAA+CGG 0.465751 6_3:+91443659 None:intergenic
GGCACAACACGAGACAAAAC+AGG 0.466693 6_3:+91440121 None:intergenic
TACTTGAAGGTATTCATGGT+TGG 0.468562 6_3:-91444697 Msa0964630:CDS
TGGCGGAGACAGCTCAAATT+GGG 0.468708 6_3:-91439984 Msa0964630:CDS
TTTCTCATTTGGAGGAAAAG+TGG 0.472194 6_3:-91439296 Msa0964630:three_prime_UTR
GAAACGGATGCATCCACAAC+AGG 0.473662 6_3:+91443675 None:intergenic
GGAAATGCTAAAATACTTGA+AGG 0.473821 6_3:-91444710 Msa0964630:CDS
CACAGACACACGTACATGTC+AGG 0.483114 6_3:-91443586 Msa0964630:CDS
AGGTTTAATAAGCTTCAATT+CGG 0.483593 6_3:+91440360 None:intergenic
TCACCTGAGCCTTTGGACTT+GGG 0.487236 6_3:-91439812 Msa0964630:CDS
ACTCTAATGAGCTATGTTGT+TGG 0.488393 6_3:-91440004 Msa0964630:CDS
CAGGATGTCATAACAGATCT+CGG 0.489128 6_3:-91443567 Msa0964630:CDS
TCTATCACTATCTTCTTCTC+CGG 0.489183 6_3:+91444374 None:intergenic
AGTCATTGAACAATATCGTT+AGG 0.491930 6_3:-91444775 Msa0964630:CDS
ATGGATGAATTGGTTGAAAG+AGG 0.499514 6_3:+91444443 None:intergenic
GCTCTAGAACTATGAGATGC+AGG 0.505141 6_3:+91444333 None:intergenic
ATCGTGGAAGCCGTGGCCCT+CGG 0.506140 6_3:+91444657 None:intergenic
TCCGTTTCTACAGCCACGCT+AGG 0.507006 6_3:-91443660 Msa0964630:CDS
CTTTCGTGGTTTGGTTTCAA+GGG 0.507727 6_3:-91440578 Msa0964630:CDS
AGTCATCATGAAAACCAGCC+GGG 0.511295 6_3:+91440191 None:intergenic
CGTTTGGTTGATCATGCCAT+TGG 0.512342 6_3:-91445865 Msa0964630:CDS
GTATATCTCGGAAACTTTCG+TGG 0.513258 6_3:-91440592 Msa0964630:CDS
AGCGTGGAATACTCATCATC+CGG 0.513656 6_3:-91444393 Msa0964630:CDS
GCTTGTCTTTAAGTTAGCTC+GGG 0.515313 6_3:-91440065 Msa0964630:CDS
GAACTATGAGATGCAGGAGA+TGG 0.519055 6_3:+91444339 None:intergenic
ATCCTCAGCAATAATTTCAC+AGG 0.519989 6_3:+91444234 None:intergenic
AATATCGTTAGGATAATCAA+TGG 0.520891 6_3:-91444764 Msa0964630:CDS
TGAATGAATCAAAGTGGCTC+CGG 0.522301 6_3:+91439379 None:intergenic
TGAACCGTAAGCCATTCTAT+TGG 0.524672 6_3:+91439832 None:intergenic
AAACGCATCTGCCAATAGAA+TGG 0.525486 6_3:-91439843 Msa0964630:CDS
TAAGAGGATGCAAAGTATCA+AGG 0.527135 6_3:-91444121 Msa0964630:CDS
GCAATTTCACATAGTTTAGG+AGG 0.527865 6_3:-91440292 Msa0964630:CDS
TATGATAGAGAAAATCCATC+AGG 0.533839 6_3:-91440392 Msa0964630:CDS
ATTCATCCATGAACTTTCTG+TGG 0.535459 6_3:-91444430 Msa0964630:CDS
GTTGAAAAGTCAGGGCAGAA+AGG 0.536466 6_3:-91439542 Msa0964630:CDS
CTATGAGATGCAGGAGATGG+AGG 0.540106 6_3:+91444342 None:intergenic
CTTCATACCCTACCTGCGGT+TGG 0.543648 6_3:-91440040 Msa0964630:CDS
CTTGTAAAGCTGATCGTCAT+CGG 0.543956 6_3:+91440321 None:intergenic
CCGTTTCTACAGCCACGCTA+GGG 0.546585 6_3:-91443659 Msa0964630:CDS
TAGTCCTCCAACCGCAGGTA+GGG 0.550562 6_3:+91440033 None:intergenic
CTTGCACAGATTATGCGTGT+TGG 0.550806 6_3:-91439890 Msa0964630:CDS
TTCCTGTGAAATTATTGCTG+AGG 0.551646 6_3:-91444236 Msa0964630:CDS
TCCATCCATCGTGGAAGCCG+TGG 0.553998 6_3:+91444650 None:intergenic
CGGGTAGGTATATAGAATGC+AGG 0.554253 6_3:+91440100 None:intergenic
CACGCATAATCTGTGCAAGA+TGG 0.555025 6_3:+91439894 None:intergenic
GTTAAACAGGATCTTCATCT+CGG 0.556822 6_3:-91443834 Msa0964630:intron
ATTAATGTGATCACTGCTGA+TGG 0.558444 6_3:-91443437 Msa0964630:CDS
CGGATCAACAAGAAGCAAGC+GGG 0.558889 6_3:+91439592 None:intergenic
CAGAATCAAAGTGAAAATGA+AGG 0.559486 6_3:+91446012 None:intergenic
TTACCCAAGTCCAAAGGCTC+AGG 0.560869 6_3:+91439809 None:intergenic
GAGTCATCATGAAAACCAGC+CGG 0.561307 6_3:+91440190 None:intergenic
CTAATGAGCTATGTTGTTGG+CGG 0.561868 6_3:-91440001 Msa0964630:CDS
AGGATGTCATAACAGATCTC+GGG 0.563730 6_3:-91443566 Msa0964630:intron
TTATATGCATGTAAATGAGA+AGG 0.567495 6_3:+91444141 None:intergenic
ATCAAAGAGTTGAAAAGTCA+GGG 0.571506 6_3:-91439550 Msa0964630:CDS
TACAACATGAACGACATGCC+AGG 0.573572 6_3:-91439938 Msa0964630:CDS
GACCAACTTTCCGAGGGCCA+CGG 0.577991 6_3:-91444667 Msa0964630:CDS
GCAGGGTATGATGTATATCT+CGG 0.578007 6_3:-91440604 Msa0964630:intron
ATCACATTAATAGCTTCGTA+AGG 0.578156 6_3:+91443449 None:intergenic
TATATGCATGTAAATGAGAA+GGG 0.580978 6_3:+91444142 None:intergenic
GCATAATCTGTGCAAGATGG+AGG 0.581573 6_3:+91439897 None:intergenic
TCTGCCAATAGAATGGCTTA+CGG 0.587022 6_3:-91439836 Msa0964630:CDS
CCTATTGTATCTAGCAAAAG+CGG 0.589210 6_3:+91444302 None:intergenic
GTTTCTCTCTAGAGATGCAT+AGG 0.590316 6_3:+91444166 None:intergenic
TCTAGCAAAAGCGGCTTCGG+AGG 0.591771 6_3:+91444311 None:intergenic
TTGGACTTGGGTAAACACTA+CGG 0.592350 6_3:-91439800 Msa0964630:CDS
AAAATATCAGCTGATCCACT+CGG 0.596243 6_3:+91439452 None:intergenic
GAACTCAGACCAACTTTCCG+AGG 0.597430 6_3:-91444674 Msa0964630:CDS
ATTATACGAAACATTTACAC+CGG 0.599314 6_3:+91439682 None:intergenic
GCAACACGAAAAGACACTCC+TGG 0.602713 6_3:+91439920 None:intergenic
GGAGACAGCTCAAATTGGGT+TGG 0.602875 6_3:-91439980 Msa0964630:CDS
ACAAGATGTAGCTAACAAGT+AGG 0.603272 6_3:-91439519 Msa0964630:exon
CAACAATGAATGAATCAAAG+TGG 0.606227 6_3:+91439373 None:intergenic
CATAATCTGTGCAAGATGGA+GGG 0.606691 6_3:+91439898 None:intergenic
GAGGGCCACGGCTTCCACGA+TGG 0.609215 6_3:-91444655 Msa0964630:CDS
TGAACTAGTCCTCCAACCGC+AGG 0.610142 6_3:+91440028 None:intergenic
TATGAGATGCAGGAGATGGA+GGG 0.613011 6_3:+91444343 None:intergenic
TGTCTTCGATGTTGTTCACA+AGG 0.613624 6_3:-91443790 Msa0964630:CDS
TAGAAGACGCGGCATTGTAG+AGG 0.613913 6_3:-91444073 Msa0964630:intron
TACAGATTGATGAAAAGTGC+CGG 0.614716 6_3:-91439701 Msa0964630:CDS
CTAGTCCTCCAACCGCAGGT+AGG 0.625336 6_3:+91440032 None:intergenic
CGAAAAGTACCTGAGTAGAG+AGG 0.627676 6_3:+91439411 None:intergenic
ACAACAGTTCCTCTCTACTC+AGG 0.628609 6_3:-91439420 Msa0964630:three_prime_UTR
TAGTGTTTACCCAAGTCCAA+AGG 0.630104 6_3:+91439803 None:intergenic
GAAGCATTACCCAATCAATG+AGG 0.631572 6_3:+91439139 None:intergenic
GCTTATTAAACCTGATATCG+AGG 0.631937 6_3:-91440350 Msa0964630:CDS
CATACGACAAGAGTTCTTCG+CGG 0.638947 6_3:+91439621 None:intergenic
CGTTTCTACAGCCACGCTAG+GGG 0.639718 6_3:-91443658 Msa0964630:CDS
ATCAATCTTGAAAGTCTGTG+TGG 0.641093 6_3:+91440223 None:intergenic
AGTTAATAGGATCTCTGCCG+CGG 0.642174 6_3:+91440153 None:intergenic
AACTCAGACCAACTTTCCGA+GGG 0.645180 6_3:-91444673 Msa0964630:CDS
TATCATGTATGTATGTATGG+TGG 0.654366 6_3:-91439217 Msa0964630:three_prime_UTR
TCGGATCAACAAGAAGCAAG+CGG 0.654478 6_3:+91439591 None:intergenic
GGATTCTGATAACTCAAGCG+TGG 0.655041 6_3:-91444409 Msa0964630:CDS
AATCAATGAGCACGGTACTG+AGG 0.658075 6_3:-91440425 Msa0964630:CDS
CAGTACTCAATCAATGAGCA+CGG 0.665483 6_3:-91440433 Msa0964630:CDS
AAGGCCCTGCATCTTCTGAG+AGG 0.667295 6_3:-91443632 Msa0964630:CDS
TTACTCTTTAGAGACACCAA+TGG 0.670927 6_3:+91445849 None:intergenic
GTTTCTACAGCCACGCTAGG+GGG 0.671376 6_3:-91443657 Msa0964630:CDS
GGATCTTCATACCCTACCTG+CGG 0.679155 6_3:-91440044 Msa0964630:CDS
CCTTACTTCTCCATCCATCG+TGG 0.686622 6_3:+91444641 None:intergenic
GTCATCATGAAAACCAGCCG+GGG 0.688582 6_3:+91440192 None:intergenic
TAATGTATGTTATTACACGA+AGG 0.691379 6_3:-91440258 Msa0964630:CDS
CGTGCTACTGATAGAAGACG+CGG 0.693377 6_3:-91444084 Msa0964630:CDS
ATGTCGTTCATGTTGTAGTG+AGG 0.701401 6_3:+91439944 None:intergenic
TATTAAACCTGATATCGAGG+AGG 0.708938 6_3:-91440347 Msa0964630:CDS
GCTAACTGGAGAAGACGAAG+CGG 0.724335 6_3:+91444210 None:intergenic
GTCTTCTATCAGTAGCACGA+TGG 0.727273 6_3:+91444088 None:intergenic
GAACTGGAAAGTTAGCCGAG+TGG 0.747484 6_3:-91439467 Msa0964630:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATTTGAATGTTTAAT+TGG - chr6_3:91439723-91439742 Msa0964630:CDS 10.0%
!! TGTAGTAAAAAAAAAAATAT+GGG + chr6_3:91444189-91444208 None:intergenic 10.0%
!! TAATTAGATTATTATGAAGA+GGG - chr6_3:91439447-91439466 Msa0964630:three_prime_UTR 15.0%
!! ATAAGAATTAAGAATATGTT+TGG - chr6_3:91439491-91439510 Msa0964630:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTTGTTGTGT+TGG - chr6_3:91439514-91439533 Msa0964630:exon 15.0%
!!! TTTTTTTGGATTTTGTTATT+TGG - chr6_3:91439672-91439691 Msa0964630:CDS 15.0%
!!! ATTGATAATCTAAAAGATTT+TGG - chr6_3:91439853-91439872 Msa0964630:CDS 15.0%
!!! TTAAATCTTGAATTATTTTC+AGG + chr6_3:91439976-91439995 None:intergenic 15.0%
!!! GTAAAATTATTTTGTTAAAC+AGG - chr6_3:91441294-91441313 Msa0964630:intron 15.0%
!! AAAATAGAACATGTATATAA+AGG + chr6_3:91441621-91441640 None:intergenic 15.0%
!!! AAAAAATGAATATTTTACCT+AGG + chr6_3:91441755-91441774 None:intergenic 15.0%
!!! AGGTAAAATATTCATTTTTT+AGG - chr6_3:91441755-91441774 Msa0964630:intron 15.0%
!!! GGTAAAATATTCATTTTTTA+GGG - chr6_3:91441756-91441775 Msa0964630:intron 15.0%
!! CTGTAGTAAAAAAAAAAATA+TGG + chr6_3:91444190-91444209 None:intergenic 15.0%
!!! CATATTTTTTTTTTTACTAC+AGG - chr6_3:91444188-91444207 Msa0964630:CDS 15.0%
!! TTGACAACATTATTTAAATT+GGG + chr6_3:91444347-91444366 None:intergenic 15.0%
!! AATAATTGCAACAAAATATT+TGG + chr6_3:91444494-91444513 None:intergenic 15.0%
!! CATCATATAGAAAAATCAAA+TGG + chr6_3:91439320-91439339 None:intergenic 20.0%
!!! CATTTGATTTTTCTATATGA+TGG - chr6_3:91439318-91439337 Msa0964630:three_prime_UTR 20.0%
!! GTAATTAGATTATTATGAAG+AGG - chr6_3:91439446-91439465 Msa0964630:three_prime_UTR 20.0%
!!! TATTAATTTGATTACGAATG+AGG - chr6_3:91439588-91439607 Msa0964630:CDS 20.0%
!!! ATTAATTTGATTACGAATGA+GGG - chr6_3:91439589-91439608 Msa0964630:CDS 20.0%
!! ATAAGAATGTTGTGTTAAAA+TGG - chr6_3:91439633-91439652 Msa0964630:CDS 20.0%
!!! ATTGTTTCATCATCTTTTTT+TGG - chr6_3:91439658-91439677 Msa0964630:CDS 20.0%
!! TATATTATCAGCAAAATTAC+AGG + chr6_3:91439707-91439726 None:intergenic 20.0%
!! ATTAAATATCACCAAAAAGT+AGG + chr6_3:91439835-91439854 None:intergenic 20.0%
!!! AAGATTTTGGTGAAATTTTT+TGG - chr6_3:91439866-91439885 Msa0964630:CDS 20.0%
!! AAAGAAAGAGAAAAAAATCA+AGG + chr6_3:91440663-91440682 None:intergenic 20.0%
!!! TTTTTCGTTTCGTTTATTTA+TGG - chr6_3:91441115-91441134 Msa0964630:intron 20.0%
!! ATATAAAAGTCACACTTATA+TGG + chr6_3:91441268-91441287 None:intergenic 20.0%
!!! CTGTTTTATCATTTTGTTTT+TGG - chr6_3:91441932-91441951 Msa0964630:intron 20.0%
!! TTATGTAAGTAAACTAATCA+CGG + chr6_3:91442065-91442084 None:intergenic 20.0%
!! TATAATACGAAACTAAATCA+AGG + chr6_3:91442866-91442885 None:intergenic 20.0%
!!! TTTTGTTATCCCTATAATTA+AGG - chr6_3:91442933-91442952 Msa0964630:intron 20.0%
!!! TTTGTTATCCCTATAATTAA+GGG - chr6_3:91442934-91442953 Msa0964630:intron 20.0%
!! ATCAAAATCCCTTAATTATA+GGG + chr6_3:91442945-91442964 None:intergenic 20.0%
!! AATCAAAATCCCTTAATTAT+AGG + chr6_3:91442946-91442965 None:intergenic 20.0%
!!! TATAGTATTTTTAGTGGTTA+GGG - chr6_3:91444082-91444101 Msa0964630:CDS 20.0%
!! CTTGACAACATTATTTAAAT+TGG + chr6_3:91444348-91444367 None:intergenic 20.0%
!!! AAGGAATTTTTTAGAACAAA+CGG - chr6_3:91444640-91444659 Msa0964630:intron 20.0%
!!! TATGTAATTCTATTTTCTCT+TGG - chr6_3:91446028-91446047 Msa0964630:five_prime_UTR 20.0%
!!! CATATTCTTGGATTTGTTAT+TGG - chr6_3:91439185-91439204 Msa0964630:three_prime_UTR 25.0%
!!! ATTTTTGAAGAGAGATTTTG+AGG - chr6_3:91439217-91439236 Msa0964630:three_prime_UTR 25.0%
!!! TTTTTTTTGTTGTGTTGGAA+TGG - chr6_3:91439519-91439538 Msa0964630:exon 25.0%
! AATTGGTATCATTTGATTGT+TGG - chr6_3:91439740-91439759 Msa0964630:CDS 25.0%
!!! ACTAGGAATTTGTATTGATT+AGG - chr6_3:91440173-91440192 Msa0964630:CDS 25.0%
! CACTAAAAAACCATATGAAT+AGG + chr6_3:91440320-91440339 None:intergenic 25.0%
! AATATCGTTAGGATAATCAA+TGG - chr6_3:91440377-91440396 Msa0964630:CDS 25.0%
!!! AAAATACTTGAAGGTATTCA+TGG - chr6_3:91440440-91440459 Msa0964630:CDS 25.0%
!!! TTTCTCTTTCTTTTTTCTAG+TGG - chr6_3:91440670-91440689 Msa0964630:intron 25.0%
! AAATCCAAAGTAAGATGTAT+TGG + chr6_3:91440882-91440901 None:intergenic 25.0%
! TATATGCATGTAAATGAGAA+GGG + chr6_3:91441002-91441021 None:intergenic 25.0%
! TTATATGCATGTAAATGAGA+AGG + chr6_3:91441003-91441022 None:intergenic 25.0%
! TCATATACATTGTCAGTATA+AGG - chr6_3:91441145-91441164 Msa0964630:intron 25.0%
! TGTGTTTGAAAACTCATATT+TGG - chr6_3:91442109-91442128 Msa0964630:intron 25.0%
!!! GTATTAGTTTTCTTTTGAAC+TGG + chr6_3:91442306-91442325 None:intergenic 25.0%
! TTTCAAAGAGTTATCAAACA+AGG - chr6_3:91442432-91442451 Msa0964630:intron 25.0%
! TTCAAAGAGTTATCAAACAA+GGG - chr6_3:91442433-91442452 Msa0964630:intron 25.0%
!! ATTTAAGTCTCGATTTTCTT+AGG - chr6_3:91443079-91443098 Msa0964630:intron 25.0%
!!! GTATAGTATTTTTAGTGGTT+AGG - chr6_3:91444081-91444100 Msa0964630:CDS 25.0%
! AAAAGTTTGAGCAATACTAA+CGG + chr6_3:91444215-91444234 None:intergenic 25.0%
! ATGTTGAATAATCTGTTTGT+AGG - chr6_3:91444278-91444297 Msa0964630:CDS 25.0%
!! ATTTCAAAATTCTCCTTTTG+AGG - chr6_3:91444301-91444320 Msa0964630:CDS 25.0%
!! AATTTTTCTTTTCGTTCAGT+TGG - chr6_3:91444383-91444402 Msa0964630:CDS 25.0%
!! ATTTTTCTTTTCGTTCAGTT+GGG - chr6_3:91444384-91444403 Msa0964630:CDS 25.0%
! AAATAACAAACCTTGATCAT+AGG + chr6_3:91444446-91444465 None:intergenic 25.0%
! AATTGCAACAAAATATTTGG+TGG + chr6_3:91444491-91444510 None:intergenic 25.0%
! TATGATTGTAATGCAGATAT+TGG - chr6_3:91444685-91444704 Msa0964630:CDS 25.0%
! AGGTTTAATAAGCTTCAATT+CGG + chr6_3:91444784-91444803 None:intergenic 25.0%
! TAATGTATGTTATTACACGA+AGG - chr6_3:91444883-91444902 Msa0964630:intron 25.0%
!!! AAGATTGATTTTATTATCCC+CGG - chr6_3:91444932-91444951 Msa0964630:intron 25.0%
!! AGAGATCCTATTAACTTTTA+TGG - chr6_3:91444995-91445014 Msa0964630:intron 25.0%
! ATTATACGAAACATTTACAC+CGG + chr6_3:91445462-91445481 None:intergenic 25.0%
!! AAACCATTTTCTTTCTCATT+TGG - chr6_3:91445834-91445853 Msa0964630:intron 25.0%
!! CAACAAGTAACATATTTTCA+AGG + chr6_3:91445872-91445891 None:intergenic 25.0%
! TTGTATCATGTATGTATGTA+TGG - chr6_3:91445921-91445940 Msa0964630:five_prime_UTR 25.0%
! TGAGAAAAATGATTCTACAA+AGG - chr6_3:91446052-91446071 Msa0964630:five_prime_UTR 25.0%
! AAAATGATTCTACAAAGGTT+TGG - chr6_3:91446057-91446076 Msa0964630:five_prime_UTR 25.0%
CAGAATCAAAGTGAAAATGA+AGG + chr6_3:91439132-91439151 None:intergenic 30.0%
TTTCACTTTGATTCTGATTC+TGG - chr6_3:91439136-91439155 Msa0964630:three_prime_UTR 30.0%
TTCACTTTGATTCTGATTCT+GGG - chr6_3:91439137-91439156 Msa0964630:three_prime_UTR 30.0%
!!! GTTGTTTTTCTGCATATTCT+TGG - chr6_3:91439173-91439192 Msa0964630:three_prime_UTR 30.0%
!!! ATGAATGCTTTTGGTTTTTG+AGG - chr6_3:91439347-91439366 Msa0964630:three_prime_UTR 30.0%
TTTGAGGAAATGGTTAATGA+TGG - chr6_3:91439363-91439382 Msa0964630:three_prime_UTR 30.0%
!! ATGGACTAAAATTCCACTTT+TGG - chr6_3:91439763-91439782 Msa0964630:CDS 30.0%
AAAACATGCTTAAACATTCC+TGG + chr6_3:91439812-91439831 None:intergenic 30.0%
!! AAGCATGTTTTCCTACTTTT+TGG - chr6_3:91439821-91439840 Msa0964630:CDS 30.0%
CAAAACATTATGCTGAACTT+TGG - chr6_3:91439910-91439929 Msa0964630:CDS 30.0%
ATTACCTAAGCTTAACTAGT+CGG + chr6_3:91440057-91440076 None:intergenic 30.0%
AGGATTCATCATAATGAATC+AGG - chr6_3:91440115-91440134 Msa0964630:CDS 30.0%
GTGTAAAACAGATAAACACT+AGG - chr6_3:91440156-91440175 Msa0964630:CDS 30.0%
! CAGTCTTATGATAATAAGAG+TGG + chr6_3:91440224-91440243 None:intergenic 30.0%
!!! TTCATATGGTTTTTTAGTGC+AGG - chr6_3:91440321-91440340 Msa0964630:CDS 30.0%
AGTCATTGAACAATATCGTT+AGG - chr6_3:91440366-91440385 Msa0964630:CDS 30.0%
!!! TCAAGTATTTTAGCATTTCC+AGG + chr6_3:91440431-91440450 None:intergenic 30.0%
GGAAATGCTAAAATACTTGA+AGG - chr6_3:91440431-91440450 Msa0964630:CDS 30.0%
AGTAGAATGTGAACAAATAG+CGG - chr6_3:91440599-91440618 Msa0964630:CDS 30.0%
AAGAGAAAAAAATCAAGGTG+AGG + chr6_3:91440658-91440677 None:intergenic 30.0%
CTCATTTACATGCATATAAG+AGG - chr6_3:91441004-91441023 Msa0964630:intron 30.0%
! TTGTTTTCATCTCATGAAAG+TGG - chr6_3:91441424-91441443 Msa0964630:intron 30.0%
TTTCTCATTATACTTGTGAC+AGG - chr6_3:91441666-91441685 Msa0964630:intron 30.0%
ATCACATTAATAGCTTCGTA+AGG + chr6_3:91441695-91441714 None:intergenic 30.0%
!! TGATGGATACATTCTTCTTT+TGG - chr6_3:91441721-91441740 Msa0964630:intron 30.0%
!! TTCTTTTGGAAAGAATACCT+AGG - chr6_3:91441735-91441754 Msa0964630:intron 30.0%
!!! CATTTTGTTTTTGGTTTCAC+AGG - chr6_3:91441941-91441960 Msa0964630:intron 30.0%
!! TGGAGTTTTTGATTCATCAA+TGG - chr6_3:91441996-91442015 Msa0964630:intron 30.0%
!! GGAGTTTTTGATTCATCAAT+GGG - chr6_3:91441997-91442016 Msa0964630:intron 30.0%
!! GAGTTTTTGATTCATCAATG+GGG - chr6_3:91441998-91442017 Msa0964630:intron 30.0%
! CATGTTATCTCTATTTTGCT+TGG - chr6_3:91442026-91442045 Msa0964630:intron 30.0%
! AGAACAATGTTTTGCTTGAA+TGG - chr6_3:91442133-91442152 Msa0964630:intron 30.0%
!! CTTGAATGGTTTGCTATAAT+AGG - chr6_3:91442147-91442166 Msa0964630:intron 30.0%
!! AATGGTTTGCTATAATAGGT+TGG - chr6_3:91442151-91442170 Msa0964630:intron 30.0%
!! ATGGTTTGCTATAATAGGTT+GGG - chr6_3:91442152-91442171 Msa0964630:intron 30.0%
AAAGTGCAAACAAATTAGAG+AGG - chr6_3:91442328-91442347 Msa0964630:intron 30.0%
TCAAAGAGTTATCAAACAAG+GGG - chr6_3:91442434-91442453 Msa0964630:intron 30.0%
ATCTCTAACAGAAAAAGGAA+AGG + chr6_3:91442471-91442490 None:intergenic 30.0%
! TTTCCTTTTTCTGTTAGAGA+TGG - chr6_3:91442470-91442489 Msa0964630:intron 30.0%
! TTTTTCTGTTAGAGATGGAA+GGG - chr6_3:91442475-91442494 Msa0964630:intron 30.0%
AAGGACTTAATCATTACTCA+GGG - chr6_3:91442523-91442542 Msa0964630:intron 30.0%
!!! CAATGTTAGTAGCTCTTTTT+TGG - chr6_3:91442717-91442736 Msa0964630:intron 30.0%
! TCTCAATCCTTTATTTACCT+TGG - chr6_3:91442775-91442794 Msa0964630:intron 30.0%
ATCTCAATAGAGATCAATCA+GGG + chr6_3:91442839-91442858 None:intergenic 30.0%
TATCTCAATAGAGATCAATC+AGG + chr6_3:91442840-91442859 None:intergenic 30.0%
!!! ATTAAGGGATTTTGATTGTG+AGG - chr6_3:91442949-91442968 Msa0964630:intron 30.0%
!!! TTAAGGGATTTTGATTGTGA+GGG - chr6_3:91442950-91442969 Msa0964630:intron 30.0%
GAGATTCTTGAATGAATTGA+TGG + chr6_3:91442995-91443014 None:intergenic 30.0%
AATCTCATTTCCAATAGTCT+AGG - chr6_3:91443009-91443028 Msa0964630:intron 30.0%
GTTTAAGTCTATATTTGTGG+AGG - chr6_3:91443104-91443123 Msa0964630:intron 30.0%
! CTCGTTAATATGGTTCTTTT+GGG - chr6_3:91443320-91443339 Msa0964630:intron 30.0%
!! ATATGGTTCTTTTGGGTAAA+TGG - chr6_3:91443327-91443346 Msa0964630:intron 30.0%
GAGTGGATACTTATTTGTTT+GGG - chr6_3:91443715-91443734 Msa0964630:CDS 30.0%
!!! GAACTAACTCTTTTAAGGTT+TGG + chr6_3:91443892-91443911 None:intergenic 30.0%
AGGGTTATTATTGATCATAG+AGG - chr6_3:91443977-91443996 Msa0964630:intron 30.0%
!! TTGATCATAGAGGTATCAAT+TGG - chr6_3:91443987-91444006 Msa0964630:intron 30.0%
!! TGATCATAGAGGTATCAATT+GGG - chr6_3:91443988-91444007 Msa0964630:intron 30.0%
!!! GTGTGGTATAGTATTTTTAG+TGG - chr6_3:91444076-91444095 Msa0964630:CDS 30.0%
! ATATGGGAAAGTCTTATCTT+AGG + chr6_3:91444173-91444192 None:intergenic 30.0%
! TAGAGTTTTCTTTTATCTGC+AGG - chr6_3:91444519-91444538 Msa0964630:intron 30.0%
! AGAGTTTTCTTTTATCTGCA+GGG - chr6_3:91444520-91444539 Msa0964630:intron 30.0%
TATGATAGAGAAAATCCATC+AGG - chr6_3:91444749-91444768 Msa0964630:CDS 30.0%
TGTGCAATTTCACATAGTTT+AGG - chr6_3:91444846-91444865 Msa0964630:intron 30.0%
AAGTTCAGAATGTTCGATTA+CGG - chr6_3:91445275-91445294 Msa0964630:intron 30.0%
CAAAGTTATAAGACCTTCAA+TGG - chr6_3:91445406-91445425 Msa0964630:intron 30.0%
! TTAGCTTGATGCTTTGAATT+CGG + chr6_3:91445572-91445591 None:intergenic 30.0%
AATCAAAGAGTTGAAAAGTC+AGG - chr6_3:91445590-91445609 Msa0964630:intron 30.0%
ATCAAAGAGTTGAAAAGTCA+GGG - chr6_3:91445591-91445610 Msa0964630:intron 30.0%
CAACAATGAATGAATCAAAG+TGG + chr6_3:91445771-91445790 None:intergenic 30.0%
CACTTTGATTCATTCATTGT+TGG - chr6_3:91445769-91445788 Msa0964630:intron 30.0%
TATCATGTATGTATGTATGG+TGG - chr6_3:91445924-91445943 Msa0964630:five_prime_UTR 30.0%
!! AAGAGAGATTTTGAGGAAGA+AGG - chr6_3:91439224-91439243 Msa0964630:three_prime_UTR 35.0%
! TTACTCTTTAGAGACACCAA+TGG + chr6_3:91439295-91439314 None:intergenic 35.0%
! ATTGGTGTCTCTAAAGAGTA+AGG - chr6_3:91439294-91439313 Msa0964630:three_prime_UTR 35.0%
!!! GCTTTTGGTTTTTGAGGAAA+TGG - chr6_3:91439353-91439372 Msa0964630:three_prime_UTR 35.0%
TATTATGAAGAGGGTTCTTG+AGG - chr6_3:91439456-91439475 Msa0964630:three_prime_UTR 35.0%
ATTACGAATGAGGGTTATTG+AGG - chr6_3:91439598-91439617 Msa0964630:CDS 35.0%
GGTATCATTTGATTGTTGGA+TGG - chr6_3:91439744-91439763 Msa0964630:CDS 35.0%
TTCTGCTTCAATGATATACC+AGG - chr6_3:91439791-91439810 Msa0964630:CDS 35.0%
GTGATTCATCAAAGTGAATC+AGG - chr6_3:91440095-91440114 Msa0964630:CDS 35.0%
!! TACTTGAAGGTATTCATGGT+TGG - chr6_3:91440444-91440463 Msa0964630:intron 35.0%
!! ACTTGAAGGTATTCATGGTT+GGG - chr6_3:91440445-91440464 Msa0964630:intron 35.0%
! AAGGCTTTTCATTACGACAT+CGG - chr6_3:91440519-91440538 Msa0964630:intron 35.0%
ATCAAGGTGAGGAATGTTAT+CGG + chr6_3:91440647-91440666 None:intergenic 35.0%
ATGGATGAATTGGTTGAAAG+AGG + chr6_3:91440701-91440720 None:intergenic 35.0%
CAGAAAGTTCATGGATGAAT+TGG + chr6_3:91440711-91440730 None:intergenic 35.0%
ATTCATCCATGAACTTTCTG+TGG - chr6_3:91440711-91440730 Msa0964630:CDS 35.0%
TCTATCACTATCTTCTTCTC+CGG + chr6_3:91440770-91440789 None:intergenic 35.0%
CCTATTGTATCTAGCAAAAG+CGG + chr6_3:91440842-91440861 None:intergenic 35.0%
ACAATAGGCATCAGATGAAT+TGG - chr6_3:91440854-91440873 Msa0964630:intron 35.0%
GGATCCAATACATCTTACTT+TGG - chr6_3:91440875-91440894 Msa0964630:intron 35.0%
TTCCTGTGAAATTATTGCTG+AGG - chr6_3:91440905-91440924 Msa0964630:intron 35.0%
ATCCTCAGCAATAATTTCAC+AGG + chr6_3:91440910-91440929 None:intergenic 35.0%
ACACGACAAAATAAGCTAAC+TGG + chr6_3:91440948-91440967 None:intergenic 35.0%
! TAAGAGGATGCAAAGTATCA+AGG - chr6_3:91441020-91441039 Msa0964630:intron 35.0%
GTTAAACAGGATCTTCATCT+CGG - chr6_3:91441307-91441326 Msa0964630:intron 35.0%
! ATTGCACCAAAAGCTTTTGA+GGG + chr6_3:91441397-91441416 None:intergenic 35.0%
! TATTGCACCAAAAGCTTTTG+AGG + chr6_3:91441398-91441417 None:intergenic 35.0%
!! AAAGCTTTTGGTGCAATATG+CGG - chr6_3:91441400-91441419 Msa0964630:intron 35.0%
AAAAATTCGCAATCCTGTTG+TGG - chr6_3:91441453-91441472 Msa0964630:intron 35.0%
ATTAATGTGATCACTGCTGA+TGG - chr6_3:91441704-91441723 Msa0964630:intron 35.0%
! AAAGCTCTTTTTCTTCAGCA+TGG - chr6_3:91441976-91441995 Msa0964630:intron 35.0%
!! TCTCTATTTTGCTTGGTTCT+AGG - chr6_3:91442033-91442052 Msa0964630:intron 35.0%
GCATGAATCTTACTGTTAGT+AGG - chr6_3:91442213-91442232 Msa0964630:intron 35.0%
GAGTTAAACACTCATTAACC+AGG + chr6_3:91442401-91442420 None:intergenic 35.0%
GGTTAATGAGTGTTTAACTC+AGG - chr6_3:91442401-91442420 Msa0964630:intron 35.0%
GAAAAAGGAAAGGAGTCAAA+GGG + chr6_3:91442461-91442480 None:intergenic 35.0%
AGAAAAAGGAAAGGAGTCAA+AGG + chr6_3:91442462-91442481 None:intergenic 35.0%
CTTCCATCTCTAACAGAAAA+AGG + chr6_3:91442476-91442495 None:intergenic 35.0%
! CTTTTTCTGTTAGAGATGGA+AGG - chr6_3:91442474-91442493 Msa0964630:intron 35.0%
GAAGGACTTAATCATTACTC+AGG - chr6_3:91442522-91442541 Msa0964630:intron 35.0%
ATTACTCAGGGATCAAGATA+GGG - chr6_3:91442535-91442554 Msa0964630:intron 35.0%
GTCATTGACATACTGAGAAA+GGG + chr6_3:91442580-91442599 None:intergenic 35.0%
TGTCATTGACATACTGAGAA+AGG + chr6_3:91442581-91442600 None:intergenic 35.0%
GAATCGTCTTAATAGTCCAA+AGG + chr6_3:91442634-91442653 None:intergenic 35.0%
!!! TAGCTCTTTTTTGGTCTTAG+CGG - chr6_3:91442726-91442745 Msa0964630:intron 35.0%
TAGCAGACCAAGGTAAATAA+AGG + chr6_3:91442785-91442804 None:intergenic 35.0%
! TAAGTCTCGATTTTCTTAGG+CGG - chr6_3:91443082-91443101 Msa0964630:intron 35.0%
GCGGTTTAAGTCTATATTTG+TGG - chr6_3:91443101-91443120 Msa0964630:intron 35.0%
AATGAAATGCCATAAACCCA+TGG + chr6_3:91443133-91443152 None:intergenic 35.0%
ATCATGTTTCATGAAGATGC+TGG - chr6_3:91443155-91443174 Msa0964630:CDS 35.0%
CTAGCAAAATCCTATGTGTT+AGG - chr6_3:91443240-91443259 Msa0964630:intron 35.0%
CCAAAAGAACCATATTAACG+AGG + chr6_3:91443322-91443341 None:intergenic 35.0%
! CCTCGTTAATATGGTTCTTT+TGG - chr6_3:91443319-91443338 Msa0964630:intron 35.0%
!! TTCTTTTGGGTAAATGGAAG+TGG - chr6_3:91443333-91443352 Msa0964630:intron 35.0%
GAAGTGGAGGTTAATTTCTA+GGG - chr6_3:91443349-91443368 Msa0964630:intron 35.0%
! AAGTGGAGGTTAATTTCTAG+GGG - chr6_3:91443350-91443369 Msa0964630:intron 35.0%
ATATCCTCATTGCTAGGTTA+CGG - chr6_3:91443390-91443409 Msa0964630:intron 35.0%
!! GGTTCTGGTTTGTATTTGAT+CGG - chr6_3:91443497-91443516 Msa0964630:intron 35.0%
!! CTTTGGAATTGGATCATCAA+GGG + chr6_3:91443608-91443627 None:intergenic 35.0%
GGAGTGGATACTTATTTGTT+TGG - chr6_3:91443714-91443733 Msa0964630:CDS 35.0%
TGGATACTTATTTGTTTGGG+AGG - chr6_3:91443718-91443737 Msa0964630:CDS 35.0%
ATACCCTGATCTAACCAAAA+AGG + chr6_3:91443836-91443855 None:intergenic 35.0%
TGGGAAAAATCAGAGATTAC+GGG + chr6_3:91443859-91443878 None:intergenic 35.0%
CTGGGAAAAATCAGAGATTA+CGG + chr6_3:91443860-91443879 None:intergenic 35.0%
! GAAGGGAACTAACTCTTTTA+AGG + chr6_3:91443897-91443916 None:intergenic 35.0%
AAAGAGTTAGTTCCCTTCTA+CGG - chr6_3:91443899-91443918 Msa0964630:intron 35.0%
AGAAGACAATTACCGTAGAA+GGG + chr6_3:91443914-91443933 None:intergenic 35.0%
! AACGCCAAAATTTGTTCAGA+CGG - chr6_3:91443954-91443973 Msa0964630:intron 35.0%
! GGTATCAATTGGGTATTTTG+AGG - chr6_3:91443998-91444017 Msa0964630:intron 35.0%
!!! TTGGGTATTTTGAGGTTTTC+TGG - chr6_3:91444006-91444025 Msa0964630:intron 35.0%
AATCACAAGTCACAAACAGA+TGG + chr6_3:91444045-91444064 None:intergenic 35.0%
! TCTGTTTGTGACTTGTGATT+TGG - chr6_3:91444045-91444064 Msa0964630:intron 35.0%
!!! GTGATTTGGTTTTTCATGTG+TGG - chr6_3:91444059-91444078 Msa0964630:intron 35.0%
! AAATCTTTTCCAGCCTCAAA+AGG + chr6_3:91444317-91444336 None:intergenic 35.0%
GTTCATCACATCAAATCTCA+AGG - chr6_3:91444621-91444640 Msa0964630:intron 35.0%
! TGGATTTTCTCTATCATAGC+AGG + chr6_3:91444747-91444766 None:intergenic 35.0%
GCTTATTAAACCTGATATCG+AGG - chr6_3:91444791-91444810 Msa0964630:CDS 35.0%
TATTAAACCTGATATCGAGG+AGG - chr6_3:91444794-91444813 Msa0964630:CDS 35.0%
GCAATTTCACATAGTTTAGG+AGG - chr6_3:91444849-91444868 Msa0964630:intron 35.0%
ATCAATCTTGAAAGTCTGTG+TGG + chr6_3:91444921-91444940 None:intergenic 35.0%
!!! CTCTAACATAGTTTTTTCCG+CGG - chr6_3:91444971-91444990 Msa0964630:intron 35.0%
CAGGAGCCATAAAAGTTAAT+AGG + chr6_3:91445004-91445023 None:intergenic 35.0%
AGACAAGCATGCGAAAAAAT+CGG + chr6_3:91445064-91445083 None:intergenic 35.0%
! TGCTTGTCTTTAAGTTAGCT+CGG - chr6_3:91445075-91445094 Msa0964630:intron 35.0%
ACTCTAATGAGCTATGTTGT+TGG - chr6_3:91445137-91445156 Msa0964630:intron 35.0%
TAGTGTCTCTTTACCATTGA+AGG + chr6_3:91445422-91445441 None:intergenic 35.0%
! TACAGATTGATGAAAAGTGC+CGG - chr6_3:91445440-91445459 Msa0964630:intron 35.0%
ACAAGATGTAGCTAACAAGT+AGG - chr6_3:91445622-91445641 Msa0964630:intron 35.0%
AAAATATCAGCTGATCCACT+CGG + chr6_3:91445692-91445711 None:intergenic 35.0%
!!! GTGGATCAGCTGATATTTTT+TGG - chr6_3:91445693-91445712 Msa0964630:intron 35.0%
CCTCCAAATGAGAAAGAAAA+TGG + chr6_3:91445840-91445859 None:intergenic 35.0%
! CCATTTTCTTTCTCATTTGG+AGG - chr6_3:91445837-91445856 Msa0964630:intron 35.0%
TTTCTCATTTGGAGGAAAAG+TGG - chr6_3:91445845-91445864 Msa0964630:intron 35.0%
ACTTCCTTAACCTCATTGAT+TGG - chr6_3:91445992-91446011 Msa0964630:five_prime_UTR 35.0%
! CTTCCTTAACCTCATTGATT+GGG - chr6_3:91445993-91446012 Msa0964630:five_prime_UTR 35.0%
TTACCCAATCAATGAGGTTA+AGG + chr6_3:91445999-91446018 None:intergenic 35.0%
TAAGCCTATGATGCAACGTT+TGG - chr6_3:91439260-91439279 Msa0964630:three_prime_UTR 40.0%
TCAACCAAACGTTGCATCAT+AGG + chr6_3:91439267-91439286 None:intergenic 40.0%
! TGGTAGCTGATGAATGCTTT+TGG - chr6_3:91439338-91439357 Msa0964630:three_prime_UTR 40.0%
AAGCAGAACAGAACCAAAAG+TGG + chr6_3:91439779-91439798 None:intergenic 40.0%
! TTTGCCGACTAGTTAAGCTT+AGG - chr6_3:91440050-91440069 Msa0964630:CDS 40.0%
CATATGAATAGGATACCCCT+CGG + chr6_3:91440309-91440328 None:intergenic 40.0%
! CTTTTGTTGGCATTACTTCC+TGG - chr6_3:91440410-91440429 Msa0964630:CDS 40.0%
GTTCACATTCTACTACGCAA+TGG + chr6_3:91440593-91440612 None:intergenic 40.0%
CAGAATCCACAGAAAGTTCA+TGG + chr6_3:91440720-91440739 None:intergenic 40.0%
!! CCGCTTTTGCTAGATACAAT+AGG - chr6_3:91440839-91440858 Msa0964630:intron 40.0%
! GTTTCTCTCTAGAGATGCAT+AGG + chr6_3:91440978-91440997 None:intergenic 40.0%
TGTCTTCGATGTTGTTCACA+AGG - chr6_3:91441351-91441370 Msa0964630:intron 40.0%
! CTATCTCCCTCAAAAGCTTT+TGG - chr6_3:91441388-91441407 Msa0964630:intron 40.0%
! TTTTCCTCTCAGAAGATGCA+GGG + chr6_3:91441516-91441535 None:intergenic 40.0%
! ATTTTCCTCTCAGAAGATGC+AGG + chr6_3:91441517-91441536 None:intergenic 40.0%
CAGGATGTCATAACAGATCT+CGG - chr6_3:91441574-91441593 Msa0964630:intron 40.0%
AGGATGTCATAACAGATCTC+GGG - chr6_3:91441575-91441594 Msa0964630:intron 40.0%
TCATAACAGATCTCGGGTAA+TGG - chr6_3:91441581-91441600 Msa0964630:intron 40.0%
GTGCAAACAAATTAGAGAGG+CGG - chr6_3:91442331-91442350 Msa0964630:intron 40.0%
TTCTGTGAGTCTTTATGTCC+TGG - chr6_3:91442380-91442399 Msa0964630:intron 40.0%
CATTACTCAGGGATCAAGAT+AGG - chr6_3:91442534-91442553 Msa0964630:intron 40.0%
TTACTCAGGGATCAAGATAG+GGG - chr6_3:91442536-91442555 Msa0964630:intron 40.0%
TGTCAATGACACTACATCCT+TGG - chr6_3:91442590-91442609 Msa0964630:intron 40.0%
GTCAATGACACTACATCCTT+GGG - chr6_3:91442591-91442610 Msa0964630:intron 40.0%
TCAATGACACTACATCCTTG+GGG - chr6_3:91442592-91442611 Msa0964630:intron 40.0%
AAGATACGATGGAGAACCTT+TGG - chr6_3:91442615-91442634 Msa0964630:intron 40.0%
GGACTATTAAGACGATTCTC+CGG - chr6_3:91442636-91442655 Msa0964630:intron 40.0%
TTAAAGCTAGCTCAAAGCAC+CGG + chr6_3:91442658-91442677 None:intergenic 40.0%
TATTTACCTTGGTCTGCTAG+TGG - chr6_3:91442786-91442805 Msa0964630:intron 40.0%
ATTTACCTTGGTCTGCTAGT+GGG - chr6_3:91442787-91442806 Msa0964630:intron 40.0%
TTTCCAATAGTCTAGGTGTG+TGG - chr6_3:91443016-91443035 Msa0964630:intron 40.0%
TATATTTGTGGAGGAGTCCA+TGG - chr6_3:91443113-91443132 Msa0964630:intron 40.0%
ATATTTGTGGAGGAGTCCAT+GGG - chr6_3:91443114-91443133 Msa0964630:intron 40.0%
AAAGGATTGTCTGACTACAG+AGG - chr6_3:91443190-91443209 Msa0964630:intron 40.0%
GCAAAATCCTATGTGTTAGG+TGG - chr6_3:91443243-91443262 Msa0964630:intron 40.0%
GGTTCTATGCCTCGTTAATA+TGG - chr6_3:91443310-91443329 Msa0964630:intron 40.0%
!! TTTTGGGTAAATGGAAGTGG+AGG - chr6_3:91443336-91443355 Msa0964630:intron 40.0%
GGAAGTGGAGGTTAATTTCT+AGG - chr6_3:91443348-91443367 Msa0964630:intron 40.0%
! AGTGGAGGTTAATTTCTAGG+GGG - chr6_3:91443351-91443370 Msa0964630:intron 40.0%
CCAGATGAAACAGGATTGAA+CGG + chr6_3:91443418-91443437 None:intergenic 40.0%
CGTTCAATCCTGTTTCATCT+GGG - chr6_3:91443416-91443435 Msa0964630:CDS 40.0%
!! CCTTTGGAATTGGATCATCA+AGG + chr6_3:91443609-91443628 None:intergenic 40.0%
! CCTTGATGATCCAATTCCAA+AGG - chr6_3:91443606-91443625 Msa0964630:CDS 40.0%
!!! GGAATTTTGATTGGCCACAT+GGG - chr6_3:91443653-91443672 Msa0964630:CDS 40.0%
ATAAGTATCCACTCCACCTA+AGG + chr6_3:91443709-91443728 None:intergenic 40.0%
ATTTGTTTGGGAGGAAAGCT+TGG - chr6_3:91443727-91443746 Msa0964630:CDS 40.0%
CATTGAGCACCAAGATCAAT+TGG + chr6_3:91443756-91443775 None:intergenic 40.0%
!!! GGTCCTTTTTGGTTAGATCA+GGG - chr6_3:91443830-91443849 Msa0964630:intron 40.0%
! CGTAATCTCTGATTTTTCCC+AGG - chr6_3:91443858-91443877 Msa0964630:intron 40.0%
! TCTGATTTTTCCCAGGTTGT+TGG - chr6_3:91443865-91443884 Msa0964630:intron 40.0%
GAGAAGACAATTACCGTAGA+AGG + chr6_3:91443915-91443934 None:intergenic 40.0%
CTACGGTAATTGTCTTCTCT+TGG - chr6_3:91443916-91443935 Msa0964630:intron 40.0%
! CCAAAATTTGTTCAGACGGA+GGG - chr6_3:91443958-91443977 Msa0964630:intron 40.0%
!!! CAAAATTCTCCTTTTGAGGC+TGG - chr6_3:91444305-91444324 Msa0964630:CDS 40.0%
TCGTTCAGTTGGGTATCTAA+TGG - chr6_3:91444394-91444413 Msa0964630:CDS 40.0%
!! TGGGTATCTAATGGTGTTGT+TGG - chr6_3:91444403-91444422 Msa0964630:CDS 40.0%
GCAGGGTATGATGTATATCT+CGG - chr6_3:91444537-91444556 Msa0964630:intron 40.0%
GTATATCTCGGAAACTTTCG+TGG - chr6_3:91444549-91444568 Msa0964630:intron 40.0%
!! ACTTTCGTGGTTTGGTTTCA+AGG - chr6_3:91444562-91444581 Msa0964630:intron 40.0%
!! CTTTCGTGGTTTGGTTTCAA+GGG - chr6_3:91444563-91444582 Msa0964630:intron 40.0%
CAGTACTCAATCAATGAGCA+CGG - chr6_3:91444708-91444727 Msa0964630:CDS 40.0%
CTTGTAAAGCTGATCGTCAT+CGG + chr6_3:91444823-91444842 None:intergenic 40.0%
! TTGATTTTATTATCCCCGGC+TGG - chr6_3:91444936-91444955 Msa0964630:intron 40.0%
GACAAGCATGCGAAAAAATC+GGG + chr6_3:91445063-91445082 None:intergenic 40.0%
! GCTTGTCTTTAAGTTAGCTC+GGG - chr6_3:91445076-91445095 Msa0964630:intron 40.0%
CTAATGAGCTATGTTGTTGG+CGG - chr6_3:91445140-91445159 Msa0964630:intron 40.0%
!! TCAAATTGGGTTGGAGTTCT+AGG - chr6_3:91445170-91445189 Msa0964630:intron 40.0%
ATGTCGTTCATGTTGTAGTG+AGG + chr6_3:91445200-91445219 None:intergenic 40.0%
CATAATCTGTGCAAGATGGA+GGG + chr6_3:91445246-91445265 None:intergenic 40.0%
AAACGCATCTGCCAATAGAA+TGG - chr6_3:91445298-91445317 Msa0964630:intron 40.0%
TCTGCCAATAGAATGGCTTA+CGG - chr6_3:91445305-91445324 Msa0964630:intron 40.0%
TGAACCGTAAGCCATTCTAT+TGG + chr6_3:91445312-91445331 None:intergenic 40.0%
TAGTGTTTACCCAAGTCCAA+AGG + chr6_3:91445341-91445360 None:intergenic 40.0%
TTGGACTTGGGTAAACACTA+CGG - chr6_3:91445341-91445360 Msa0964630:intron 40.0%
ATTCCTGTTGATCTTGTTGC+TGG - chr6_3:91445374-91445393 Msa0964630:intron 40.0%
TTATACAGTCGTTGTCGAAC+TGG - chr6_3:91445658-91445677 Msa0964630:intron 40.0%
TGAATGAATCAAAGTGGCTC+CGG + chr6_3:91445765-91445784 None:intergenic 40.0%
! GAAGCATTACCCAATCAATG+AGG + chr6_3:91446005-91446024 None:intergenic 40.0%
CGTTTGGTTGATCATGCCAT+TGG - chr6_3:91439276-91439295 Msa0964630:three_prime_UTR 45.0%
CATTGATGTTTGAGAGCCGA+GGG - chr6_3:91440290-91440309 Msa0964630:CDS 45.0%
ATTGATGTTTGAGAGCCGAG+GGG - chr6_3:91440291-91440310 Msa0964630:CDS 45.0%
!! CGAGGGGTATCCTATTCATA+TGG - chr6_3:91440307-91440326 Msa0964630:CDS 45.0%
!! TGGAGTGTCTGCACTTTTGT+TGG - chr6_3:91440397-91440416 Msa0964630:CDS 45.0%
AACTCAGACCAACTTTCCGA+GGG - chr6_3:91440468-91440487 Msa0964630:intron 45.0%
! GCGGATTATAGCTTGTGTAG+CGG - chr6_3:91440618-91440637 Msa0964630:intron 45.0%
GGATTCTGATAACTCAAGCG+TGG - chr6_3:91440732-91440751 Msa0964630:CDS 45.0%
AGCGTGGAATACTCATCATC+CGG - chr6_3:91440748-91440767 Msa0964630:intron 45.0%
TATGAGATGCAGGAGATGGA+GGG + chr6_3:91440801-91440820 None:intergenic 45.0%
GAACTATGAGATGCAGGAGA+TGG + chr6_3:91440805-91440824 None:intergenic 45.0%
!! GCTCTAGAACTATGAGATGC+AGG + chr6_3:91440811-91440830 None:intergenic 45.0%
GTATCTAGCAAAAGCGGCTT+CGG + chr6_3:91440836-91440855 None:intergenic 45.0%
GTCTTCTATCAGTAGCACGA+TGG + chr6_3:91441056-91441075 None:intergenic 45.0%
CAACAAGTGGAAACAGGCTT+TGG + chr6_3:91442253-91442272 None:intergenic 45.0%
ACTTTGCCAAGAGCAGTTGA+TGG - chr6_3:91442690-91442709 Msa0964630:intron 45.0%
CTTTGCCAAGAGCAGTTGAT+GGG - chr6_3:91442691-91442710 Msa0964630:intron 45.0%
TTTACCTTGGTCTGCTAGTG+GGG - chr6_3:91442788-91442807 Msa0964630:intron 45.0%
ACTCCACACACCTAGACTAT+TGG + chr6_3:91443022-91443041 None:intergenic 45.0%
ATAGTCTAGGTGTGTGGAGT+AGG - chr6_3:91443022-91443041 Msa0964630:intron 45.0%
! TGAAGATGCTGGTTGAAGTG+TGG - chr6_3:91443166-91443185 Msa0964630:CDS 45.0%
! TGCTGGTTGAAGTGTGGAAA+AGG - chr6_3:91443172-91443191 Msa0964630:CDS 45.0%
!! TCCTTTGGGATGGTTCTAAG+CGG - chr6_3:91443217-91443236 Msa0964630:intron 45.0%
CCGTTCAATCCTGTTTCATC+TGG - chr6_3:91443415-91443434 Msa0964630:CDS 45.0%
TCAATCCTGTTTCATCTGGG+TGG - chr6_3:91443419-91443438 Msa0964630:CDS 45.0%
CATTTCGTAACCCACCCAAA+CGG + chr6_3:91443445-91443464 None:intergenic 45.0%
GGTTACGAAATGTCTCTCAG+TGG - chr6_3:91443453-91443472 Msa0964630:CDS 45.0%
TACGAAATGTCTCTCAGTGG+TGG - chr6_3:91443456-91443475 Msa0964630:CDS 45.0%
ACGAAATGTCTCTCAGTGGT+GGG - chr6_3:91443457-91443476 Msa0964630:intron 45.0%
GTTTGTATTTGATCGGCCAC+TGG - chr6_3:91443504-91443523 Msa0964630:intron 45.0%
CATCCCAAAAAGAGGTTGAC+CGG + chr6_3:91443565-91443584 None:intergenic 45.0%
CTAGTGGTCATCCCAAAAAG+AGG + chr6_3:91443573-91443592 None:intergenic 45.0%
!!! CTCTTTTTGGGATGACCACT+AGG - chr6_3:91443571-91443590 Msa0964630:CDS 45.0%
!!! TTTTTGGGATGACCACTAGG+TGG - chr6_3:91443574-91443593 Msa0964630:CDS 45.0%
!! CCTGAAAGAGCCTTTGGAAT+TGG + chr6_3:91443619-91443638 None:intergenic 45.0%
CCAATTCCAAAGGCTCTTTC+AGG - chr6_3:91443616-91443635 Msa0964630:CDS 45.0%
CCAAAACCTGAAAGAGCCTT+TGG + chr6_3:91443625-91443644 None:intergenic 45.0%
!!! CCAAAGGCTCTTTCAGGTTT+TGG - chr6_3:91443622-91443641 Msa0964630:CDS 45.0%
!!! TTTCAGGTTTTGGACCAGCA+GGG - chr6_3:91443632-91443651 Msa0964630:CDS 45.0%
!! GACCAGCAGGGAATTTTGAT+TGG - chr6_3:91443644-91443663 Msa0964630:CDS 45.0%
!!! GGGAATTTTGATTGGCCACA+TGG - chr6_3:91443652-91443671 Msa0964630:CDS 45.0%
!!! GGGTCCTTTTTGGTTAGATC+AGG - chr6_3:91443829-91443848 Msa0964630:intron 45.0%
AAGGTTTGGACCAACAACCT+GGG + chr6_3:91443878-91443897 None:intergenic 45.0%
TAAGGTTTGGACCAACAACC+TGG + chr6_3:91443879-91443898 None:intergenic 45.0%
! GCCAAAATTTGTTCAGACGG+AGG - chr6_3:91443957-91443976 Msa0964630:intron 45.0%
! CCCTCCGTCTGAACAAATTT+TGG + chr6_3:91443961-91443980 None:intergenic 45.0%
GTTAGTCATGCCTCCAGATT+CGG - chr6_3:91444110-91444129 Msa0964630:CDS 45.0%
TGATCATAGGCTGCAAAAGC+TGG + chr6_3:91444433-91444452 None:intergenic 45.0%
! GCTTTTGCAGCCTATGATCA+AGG - chr6_3:91444433-91444452 Msa0964630:CDS 45.0%
TCTCGGAAACTTTCGTGGTT+TGG - chr6_3:91444554-91444573 Msa0964630:intron 45.0%
AATCAATGAGCACGGTACTG+AGG - chr6_3:91444716-91444735 Msa0964630:CDS 45.0%
! ATTCGGCAGTTTTCACCTGA+TGG + chr6_3:91444767-91444786 None:intergenic 45.0%
AGTCATCATGAAAACCAGCC+GGG + chr6_3:91444953-91444972 None:intergenic 45.0%
GAGTCATCATGAAAACCAGC+CGG + chr6_3:91444954-91444973 None:intergenic 45.0%
AGTTAATAGGATCTCTGCCG+CGG + chr6_3:91444991-91445010 None:intergenic 45.0%
CGGGTAGGTATATAGAATGC+AGG + chr6_3:91445044-91445063 None:intergenic 45.0%
AGCATGCGAAAAAATCGGGT+AGG + chr6_3:91445059-91445078 None:intergenic 45.0%
TACAACATGAACGACATGCC+AGG - chr6_3:91445203-91445222 Msa0964630:intron 45.0%
GCATAATCTGTGCAAGATGG+AGG + chr6_3:91445247-91445266 None:intergenic 45.0%
CACGCATAATCTGTGCAAGA+TGG + chr6_3:91445250-91445269 None:intergenic 45.0%
CTTGCACAGATTATGCGTGT+TGG - chr6_3:91445251-91445270 Msa0964630:intron 45.0%
TGTCCAGCAACAAGATCAAC+AGG + chr6_3:91445380-91445399 None:intergenic 45.0%
CATACGACAAGAGTTCTTCG+CGG + chr6_3:91445523-91445542 None:intergenic 45.0%
TCGGATCAACAAGAAGCAAG+CGG + chr6_3:91445553-91445572 None:intergenic 45.0%
GTTGAAAAGTCAGGGCAGAA+AGG - chr6_3:91445599-91445618 Msa0964630:intron 45.0%
ACAACAGTTCCTCTCTACTC+AGG - chr6_3:91445721-91445740 Msa0964630:intron 45.0%
!! CGAAAAGTACCTGAGTAGAG+AGG + chr6_3:91445733-91445752 None:intergenic 45.0%
! GTACTTTTCGCATTCGTTGC+CGG - chr6_3:91445743-91445762 Msa0964630:intron 45.0%
!! AAATAAAATATCTATATAAT+AGG + chr6_3:91442895-91442914 None:intergenic 5.0%
! GCATTGATGTTTGAGAGCCG+AGG - chr6_3:91440289-91440308 Msa0964630:CDS 50.0%
GAACTCAGACCAACTTTCCG+AGG - chr6_3:91440467-91440486 Msa0964630:intron 50.0%
CCTTACTTCTCCATCCATCG+TGG + chr6_3:91440503-91440522 None:intergenic 50.0%
CCACGATGGATGGAGAAGTA+AGG - chr6_3:91440500-91440519 Msa0964630:intron 50.0%
CTATGAGATGCAGGAGATGG+AGG + chr6_3:91440802-91440821 None:intergenic 50.0%
GCTAACTGGAGAAGACGAAG+CGG + chr6_3:91440934-91440953 None:intergenic 50.0%
! CGTGCTACTGATAGAAGACG+CGG - chr6_3:91441057-91441076 Msa0964630:intron 50.0%
TAGAAGACGCGGCATTGTAG+AGG - chr6_3:91441068-91441087 Msa0964630:intron 50.0%
GAAACGGATGCATCCACAAC+AGG + chr6_3:91441469-91441488 None:intergenic 50.0%
CACAGACACACGTACATGTC+AGG - chr6_3:91441555-91441574 Msa0964630:intron 50.0%
ACCACGCAACAAGTGGAAAC+AGG + chr6_3:91442259-91442278 None:intergenic 50.0%
! TGTTTCCACTTGTTGCGTGG+TGG - chr6_3:91442258-91442277 Msa0964630:intron 50.0%
AATTAGAGAGGCGGCGTTTC+TGG - chr6_3:91442340-91442359 Msa0964630:intron 50.0%
AGAGATGGAAGGGCTGAATG+CGG - chr6_3:91442485-91442504 Msa0964630:intron 50.0%
GGGATCAAGATAGGGGATTC+TGG - chr6_3:91442543-91442562 Msa0964630:intron 50.0%
CATCCTTGGGGAAGATACGA+TGG - chr6_3:91442604-91442623 Msa0964630:intron 50.0%
TCTCCATCGTATCTTCCCCA+AGG + chr6_3:91442610-91442629 None:intergenic 50.0%
GAGCTTCTTGCACTGTAGAG+TGG - chr6_3:91442750-91442769 Msa0964630:intron 50.0%
TTACCTTGGTCTGCTAGTGG+GGG - chr6_3:91442789-91442808 Msa0964630:intron 50.0%
!! GTGGAGTAGGTTAGCCTCAA+AGG - chr6_3:91443035-91443054 Msa0964630:intron 50.0%
TGGAGGAGTCCATGGGTTTA+TGG - chr6_3:91443121-91443140 Msa0964630:intron 50.0%
!! ACTACAGAGGCGCTTCCTTT+GGG - chr6_3:91443203-91443222 Msa0964630:intron 50.0%
CCTCAGACCACCTAACACAT+AGG + chr6_3:91443253-91443272 None:intergenic 50.0%
CCTATGTGTTAGGTGGTCTG+AGG - chr6_3:91443250-91443269 Msa0964630:intron 50.0%
GTTTGCAAGCCGAAGAGTAG+AGG - chr6_3:91443272-91443291 Msa0964630:intron 50.0%
CCTAGACCTCCTCTACTCTT+CGG + chr6_3:91443284-91443303 None:intergenic 50.0%
CGAAGAGTAGAGGAGGTCTA+GGG - chr6_3:91443282-91443301 Msa0964630:intron 50.0%
GAAGAGTAGAGGAGGTCTAG+GGG - chr6_3:91443283-91443302 Msa0964630:intron 50.0%
TAGAGGAGGTCTAGGGGTTA+GGG - chr6_3:91443289-91443308 Msa0964630:intron 50.0%
TGCGGGATATCCTCATTGCT+AGG - chr6_3:91443384-91443403 Msa0964630:intron 50.0%
GGATCCGTAACCTAGCAATG+AGG + chr6_3:91443397-91443416 None:intergenic 50.0%
TTTCATCTGGGTGGCCGTTT+GGG - chr6_3:91443428-91443447 Msa0964630:CDS 50.0%
! AAATGTCTCTCAGTGGTGGG+AGG - chr6_3:91443460-91443479 Msa0964630:intron 50.0%
! AATGTCTCTCAGTGGTGGGA+GGG - chr6_3:91443461-91443480 Msa0964630:intron 50.0%
GTTCCCATATGGTGTGGTCA+AGG - chr6_3:91443526-91443545 Msa0964630:intron 50.0%
CCACCTTGACCACACCATAT+GGG + chr6_3:91443532-91443551 None:intergenic 50.0%
ACCACCTTGACCACACCATA+TGG + chr6_3:91443533-91443552 None:intergenic 50.0%
ATGGTGTGGTCAAGGTGGTT+CGG - chr6_3:91443534-91443553 Msa0964630:intron 50.0%
! ATCGCCGGTCAACCTCTTTT+TGG - chr6_3:91443558-91443577 Msa0964630:intron 50.0%
! TCGCCGGTCAACCTCTTTTT+GGG - chr6_3:91443559-91443578 Msa0964630:intron 50.0%
!!! CTTTCAGGTTTTGGACCAGC+AGG - chr6_3:91443631-91443650 Msa0964630:CDS 50.0%
GGCCAATCAAAATTCCCTGC+TGG + chr6_3:91443649-91443668 None:intergenic 50.0%
! GAAAGTGGGTCTAGGACCTT+AGG - chr6_3:91443690-91443709 Msa0964630:CDS 50.0%
TGTTTGGGAGGAAAGCTTGG+TGG - chr6_3:91443730-91443749 Msa0964630:CDS 50.0%
! GCTTGGTGGCCAATTGATCT+TGG - chr6_3:91443744-91443763 Msa0964630:CDS 50.0%
! TGACAGCAGTGGGTCCTTTT+TGG - chr6_3:91443819-91443838 Msa0964630:CDS 50.0%
AGAGCCTGAAAAGCCGAATC+TGG + chr6_3:91444126-91444145 None:intergenic 50.0%
!! AGATTCGGCTTTTCAGGCTC+TGG - chr6_3:91444125-91444144 Msa0964630:CDS 50.0%
!! GATTCGGCTTTTCAGGCTCT+GGG - chr6_3:91444126-91444145 Msa0964630:CDS 50.0%
!! ATTCGGCTTTTCAGGCTCTG+GGG - chr6_3:91444127-91444146 Msa0964630:CDS 50.0%
TCGGTTTCCTCCTCGATATC+AGG + chr6_3:91444804-91444823 None:intergenic 50.0%
GTCATCATGAAAACCAGCCG+GGG + chr6_3:91444952-91444971 None:intergenic 50.0%
GGCACAACACGAGACAAAAC+AGG + chr6_3:91445023-91445042 None:intergenic 50.0%
GGATCTTCATACCCTACCTG+CGG - chr6_3:91445097-91445116 Msa0964630:intron 50.0%
TTGGCGGAGACAGCTCAAAT+TGG - chr6_3:91445156-91445175 Msa0964630:intron 50.0%
TGGCGGAGACAGCTCAAATT+GGG - chr6_3:91445157-91445176 Msa0964630:intron 50.0%
GGAGACAGCTCAAATTGGGT+TGG - chr6_3:91445161-91445180 Msa0964630:intron 50.0%
GCAACACGAAAAGACACTCC+TGG + chr6_3:91445224-91445243 None:intergenic 50.0%
TTACGGTTCACCTGAGCCTT+TGG - chr6_3:91445322-91445341 Msa0964630:intron 50.0%
TTCACCTGAGCCTTTGGACT+TGG - chr6_3:91445328-91445347 Msa0964630:intron 50.0%
TCACCTGAGCCTTTGGACTT+GGG - chr6_3:91445329-91445348 Msa0964630:intron 50.0%
TTACCCAAGTCCAAAGGCTC+AGG + chr6_3:91445335-91445354 None:intergenic 50.0%
CGGATCAACAAGAAGCAAGC+GGG + chr6_3:91445552-91445571 None:intergenic 50.0%
GAACTGGAAAGTTAGCCGAG+TGG - chr6_3:91445674-91445693 Msa0964630:intron 50.0%
TCTAGCAAAAGCGGCTTCGG+AGG + chr6_3:91440833-91440852 None:intergenic 55.0%
TCCGTTTCTACAGCCACGCT+AGG - chr6_3:91441481-91441500 Msa0964630:intron 55.0%
CCCTAGCGTGGCTGTAGAAA+CGG + chr6_3:91441485-91441504 None:intergenic 55.0%
CCGTTTCTACAGCCACGCTA+GGG - chr6_3:91441482-91441501 Msa0964630:intron 55.0%
CGTTTCTACAGCCACGCTAG+GGG - chr6_3:91441483-91441502 Msa0964630:intron 55.0%
GTTTCTACAGCCACGCTAGG+GGG - chr6_3:91441484-91441503 Msa0964630:intron 55.0%
AAGGCCCTGCATCTTCTGAG+AGG - chr6_3:91441509-91441528 Msa0964630:intron 55.0%
! GCCTGTTTCCACTTGTTGCG+TGG - chr6_3:91442255-91442274 Msa0964630:intron 55.0%
CAACTCCACCACGCAACAAG+TGG + chr6_3:91442266-91442285 None:intergenic 55.0%
! CACTTGTTGCGTGGTGGAGT+TGG - chr6_3:91442264-91442283 Msa0964630:intron 55.0%
! GCGGAGATCAGAAGTGCAGA+AGG - chr6_3:91442504-91442523 Msa0964630:intron 55.0%
TGACGCCCATCAACTGCTCT+TGG + chr6_3:91442699-91442718 None:intergenic 55.0%
GAGATCAATCAGGGCTCCTC+CGG + chr6_3:91442830-91442849 None:intergenic 55.0%
!! GACTACAGAGGCGCTTCCTT+TGG - chr6_3:91443202-91443221 Msa0964630:intron 55.0%
GCCGCTTAGAACCATCCCAA+AGG + chr6_3:91443221-91443240 None:intergenic 55.0%
TGCAAGCCGAAGAGTAGAGG+AGG - chr6_3:91443275-91443294 Msa0964630:intron 55.0%
CCGAAGAGTAGAGGAGGTCT+AGG - chr6_3:91443281-91443300 Msa0964630:intron 55.0%
GTAGAGGAGGTCTAGGGGTT+AGG - chr6_3:91443288-91443307 Msa0964630:intron 55.0%
AACGGCCACCCAGATGAAAC+AGG + chr6_3:91443427-91443446 None:intergenic 55.0%
GTTTCATCTGGGTGGCCGTT+TGG - chr6_3:91443427-91443446 Msa0964630:CDS 55.0%
GGTGTCTCGTTGCTAGGTTC+TGG - chr6_3:91443482-91443501 Msa0964630:intron 55.0%
!! ATCGGCCACTGGTTCCCATA+TGG - chr6_3:91443515-91443534 Msa0964630:intron 55.0%
CCACACCATATGGGAACCAG+TGG + chr6_3:91443523-91443542 None:intergenic 55.0%
!! CCACTGGTTCCCATATGGTG+TGG - chr6_3:91443520-91443539 Msa0964630:intron 55.0%
CCCATATGGTGTGGTCAAGG+TGG - chr6_3:91443529-91443548 Msa0964630:intron 55.0%
! TCAAGGTGGTTCGGAATCGC+CGG - chr6_3:91443543-91443562 Msa0964630:intron 55.0%
! TGATTGGCCACATGGGCCAT+TGG - chr6_3:91443660-91443679 Msa0964630:CDS 55.0%
! GATTGGCCACATGGGCCATT+GGG - chr6_3:91443661-91443680 Msa0964630:CDS 55.0%
! AGTGGGTCTAGGACCTTAGG+TGG - chr6_3:91443693-91443712 Msa0964630:CDS 55.0%
! GTCTAGGACCTTAGGTGGAG+TGG - chr6_3:91443698-91443717 Msa0964630:CDS 55.0%
CTTCCACCTCCAACAATCCC+CGG + chr6_3:91443797-91443816 None:intergenic 55.0%
! AGGTGGAAGCATGACAGCAG+TGG - chr6_3:91443808-91443827 Msa0964630:CDS 55.0%
! GGTGGAAGCATGACAGCAGT+GGG - chr6_3:91443809-91443828 Msa0964630:CDS 55.0%
! GCCTCCAGATTCGGCTTTTC+AGG - chr6_3:91444119-91444138 Msa0964630:CDS 55.0%
GCCTGAAAAGCCGAATCTGG+AGG + chr6_3:91444123-91444142 None:intergenic 55.0%
!! TTCGGCTTTTCAGGCTCTGG+GGG - chr6_3:91444128-91444147 Msa0964630:CDS 55.0%
CTTCATACCCTACCTGCGGT+TGG - chr6_3:91445101-91445120 Msa0964630:intron 55.0%
TAGTCCTCCAACCGCAGGTA+GGG + chr6_3:91445111-91445130 None:intergenic 55.0%
TGAACTAGTCCTCCAACCGC+AGG + chr6_3:91445116-91445135 None:intergenic 55.0%
GACCAACTTTCCGAGGGCCA+CGG - chr6_3:91440474-91440493 Msa0964630:intron 60.0%
TCCATCCATCGTGGAAGCCG+TGG + chr6_3:91440494-91440513 None:intergenic 60.0%
! GAGGCGGCGTTTCTGGATTC+AGG - chr6_3:91442347-91442366 Msa0964630:intron 60.0%
! TCCTCCGGTTGACTTCCTGC+GGG + chr6_3:91442815-91442834 None:intergenic 60.0%
! CTCCTCCGGTTGACTTCCTG+CGG + chr6_3:91442816-91442835 None:intergenic 60.0%
!! CAGAGGCGCTTCCTTTGGGA+TGG - chr6_3:91443207-91443226 Msa0964630:intron 60.0%
CTAGGGGGCAAGCTCTGTTG+CGG - chr6_3:91443366-91443385 Msa0964630:intron 60.0%
TAGGGGGCAAGCTCTGTTGC+GGG - chr6_3:91443367-91443386 Msa0964630:intron 60.0%
ATCTGGGTGGCCGTTTGGGT+GGG - chr6_3:91443432-91443451 Msa0964630:CDS 60.0%
!! TGGGAGGGTGTCTCGTTGCT+AGG - chr6_3:91443476-91443495 Msa0964630:intron 60.0%
GGATGACCACTAGGTGGCAG+CGG - chr6_3:91443580-91443599 Msa0964630:CDS 60.0%
CCATTGGGCAGGGGGAAAGT+GGG - chr6_3:91443676-91443695 Msa0964630:CDS 60.0%
GAGATCTCGCTCTCCCATGC+CGG - chr6_3:91443775-91443794 Msa0964630:CDS 60.0%
AGATCTCGCTCTCCCATGCC+GGG - chr6_3:91443776-91443795 Msa0964630:CDS 60.0%
TCTCCCATGCCGGGGATTGT+TGG - chr6_3:91443785-91443804 Msa0964630:CDS 60.0%
CCTCCAACAATCCCCGGCAT+GGG + chr6_3:91443791-91443810 None:intergenic 60.0%
ACCTCCAACAATCCCCGGCA+TGG + chr6_3:91443792-91443811 None:intergenic 60.0%
ATGCCGGGGATTGTTGGAGG+TGG - chr6_3:91443791-91443810 Msa0964630:CDS 60.0%
!!! TCGGCTTTTCAGGCTCTGGG+GGG - chr6_3:91444129-91444148 Msa0964630:CDS 60.0%
!!! CTTTTCAGGCTCTGGGGGGA+GGG - chr6_3:91444133-91444152 Msa0964630:CDS 60.0%
!!! TTTTCAGGCTCTGGGGGGAG+GGG - chr6_3:91444134-91444153 Msa0964630:CDS 60.0%
CATACCCTACCTGCGGTTGG+AGG - chr6_3:91445104-91445123 Msa0964630:intron 60.0%
CTAGTCCTCCAACCGCAGGT+AGG + chr6_3:91445112-91445131 None:intergenic 60.0%
AGCCGTGGCCCTCGGAAAGT+TGG + chr6_3:91440479-91440498 None:intergenic 65.0%
ATCGTGGAAGCCGTGGCCCT+CGG + chr6_3:91440487-91440506 None:intergenic 65.0%
GCCACGGCTTCCACGATGGA+TGG - chr6_3:91440490-91440509 Msa0964630:intron 65.0%
ACAGCCACGCTAGGGGGAGA+AGG - chr6_3:91441490-91441509 Msa0964630:intron 65.0%
CATCTGGGTGGCCGTTTGGG+TGG - chr6_3:91443431-91443450 Msa0964630:CDS 65.0%
GCCACATGGGCCATTGGGCA+GGG - chr6_3:91443666-91443685 Msa0964630:CDS 65.0%
CCACATGGGCCATTGGGCAG+GGG - chr6_3:91443667-91443686 Msa0964630:CDS 65.0%
CACATGGGCCATTGGGCAGG+GGG - chr6_3:91443668-91443687 Msa0964630:CDS 65.0%
GCCATTGGGCAGGGGGAAAG+TGG - chr6_3:91443675-91443694 Msa0964630:CDS 65.0%
CCCACTTTCCCCCTGCCCAA+TGG + chr6_3:91443679-91443698 None:intergenic 65.0%
GGCAGGGGGAAAGTGGGTCT+AGG - chr6_3:91443682-91443701 Msa0964630:CDS 65.0%
GATCTCGCTCTCCCATGCCG+GGG - chr6_3:91443777-91443796 Msa0964630:CDS 65.0%
CCCATGCCGGGGATTGTTGG+AGG - chr6_3:91443788-91443807 Msa0964630:CDS 65.0%
!!! GCTTTTCAGGCTCTGGGGGG+AGG - chr6_3:91444132-91444151 Msa0964630:CDS 65.0%
TGGGGGGAGGGGATAGGTCT+AGG - chr6_3:91444145-91444164 Msa0964630:CDS 65.0%
GAGGGCCACGGCTTCCACGA+TGG - chr6_3:91440486-91440505 Msa0964630:intron 70.0%
AGGGCCTTCTCCCCCTAGCG+TGG + chr6_3:91441497-91441516 None:intergenic 70.0%
GGGCCCCCACTAGCAGACCA+AGG + chr6_3:91442795-91442814 None:intergenic 70.0%
GGGGCCCGCAGGAAGTCAAC+CGG - chr6_3:91442808-91442827 Msa0964630:intron 70.0%
GCCCGCAGGAAGTCAACCGG+AGG - chr6_3:91442811-91442830 Msa0964630:intron 70.0%
!! AGGGTGCCGCTGCCACCTAG+TGG + chr6_3:91443589-91443608 None:intergenic 70.0%
GGCCACATGGGCCATTGGGC+AGG - chr6_3:91443665-91443684 Msa0964630:CDS 70.0%
CCCCTGCCCAATGGCCCATG+TGG + chr6_3:91443670-91443689 None:intergenic 70.0%
!! AGGCTCTGGGGGGAGGGGAT+AGG - chr6_3:91444139-91444158 Msa0964630:CDS 70.0%
GTCTGCTAGTGGGGGCCCGC+AGG - chr6_3:91442797-91442816 Msa0964630:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 91439064 91446099 91439064 ID=Msa0964630;Name=Msa0964630
chr6_3 mRNA 91439064 91446099 91439064 ID=Msa0964630-mRNA-1;Parent=Msa0964630;Name=Msa0964630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=203|1|1|1|0.87|0.77|9|456|698
chr6_3 exon 91439064 91440462 91439064 ID=Msa0964630-mRNA-1:exon:16530;Parent=Msa0964630-mRNA-1
chr6_3 exon 91440547 91440622 91440547 ID=Msa0964630-mRNA-1:exon:16529;Parent=Msa0964630-mRNA-1
chr6_3 exon 91440709 91440761 91440709 ID=Msa0964630-mRNA-1:exon:16528;Parent=Msa0964630-mRNA-1
chr6_3 exon 91443144 91443200 91443144 ID=Msa0964630-mRNA-1:exon:16527;Parent=Msa0964630-mRNA-1
chr6_3 exon 91443407 91443475 91443407 ID=Msa0964630-mRNA-1:exon:16526;Parent=Msa0964630-mRNA-1
chr6_3 exon 91443567 91443847 91443567 ID=Msa0964630-mRNA-1:exon:16525;Parent=Msa0964630-mRNA-1
chr6_3 exon 91444074 91444473 91444074 ID=Msa0964630-mRNA-1:exon:16524;Parent=Msa0964630-mRNA-1
chr6_3 exon 91444647 91444820 91444647 ID=Msa0964630-mRNA-1:exon:16523;Parent=Msa0964630-mRNA-1
chr6_3 exon 91445853 91446099 91445853 ID=Msa0964630-mRNA-1:exon:16522;Parent=Msa0964630-mRNA-1
chr6_3 five_prime_UTR 91445897 91446099 91445897 ID=Msa0964630-mRNA-1:five_prime_utr;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91445853 91445896 91445853 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91444647 91444820 91444647 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91444074 91444473 91444074 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91443567 91443847 91443567 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91443407 91443475 91443407 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91443144 91443200 91443144 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91440709 91440761 91440709 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91440547 91440622 91440547 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 CDS 91439520 91440462 91439520 ID=Msa0964630-mRNA-1:cds;Parent=Msa0964630-mRNA-1
chr6_3 three_prime_UTR 91439064 91439519 91439064 ID=Msa0964630-mRNA-1:three_prime_utr;Parent=Msa0964630-mRNA-1
Gene Sequence

>Msa0964630

ATGATGCAACGTTTGGTTGATCATGCCATTGGTGTCTCTAAAGAGTCAGTAAAGACTATTACTTGTGAGTCATTGAACAATATCGTTAGGATAATCAATGGAGTGTCTGCACTTTTGTTGGCATTACTTCCTGGAAATGCTAAAATACTTGAAGGTATTCATGGTTGGGAACTCAGACCAACTTTCCGAGGGCCACGGCTTCCACGATGGATGGAGAATGGTGCGTCCTCTTTCAACCAATTCATCCATGAACTTTCTGTGGATTCTGATAACTCAAGCGTGGAATACTCATCATCCGGAGAAGAAGATAGTGATAGATATGAATGCCCTCCATCTCCTGCATCTCATAGTTCTAGAGCCTCCGAAGCCGCTTTTGCTAGATACAATAGGCATCAGATGAATTGGATCCAATACATCTTACTTTGGATTTTACTTCCTGTGAAATTATTGCTGAGGATTCCGCTTCGTCTTCTCCAGTTAGCTTATTTTGTCGTGTCAAAAGTCCTATGCATCTCTAGAGAGAAACGCCCTTCTCATTTACATGCATATAAGAGGATGCAAAGTATCAAGGAACAATTTGTCCATCGTGCTACTGATAGAAGACGCGGCATTGTAGAGGATCTTCATCTCGGCACAGAGATATGTATAGAAGCTGTCTTCGATGTTGTTCACAAGGCAGCACATCTTGTTCTATCTCCCTCAAAAGCTTTTGGTGCAATATGCGGATTGTTTTCATCTCATGAAAGTGGCATTAAAAAAATTCGCAATCCTGTTGTGGATGCATCCGTTTCTACAGCCACGCTAGGGGGAGAAGGCCCTGCATCTTCTGAGAGGAAAATCAACTACGAGTCTCTGAACACAGACACACGTACATGTCAGGATGTCATAACAGATCTCGGGTATCCTTACGAAGCTATTAATGTGATCACTGCTGATGGATACATTCTTCTTTTGGAAAGAATACCTAGGAGAGATGCAAGAAAAGCTCTTTTTCTTCAGCATGGAGTTTTTGATTCATCAATGGGTTGGGTATCTAATGGTGTTGTTGGATCTCCAGCTTTTGCAGCCTATGATCAAGGGTATGATGTATATCTCGGAAACTTTCGTGGTTTGGTTTCAAGGGAACATGTCAACAAAAACATTTCATCGCGACAATATTGGCAGTACTCAATCAATGAGCACGGTACTGAGGATATTCCTGCTATGATAGAGAAAATCCATCAGGTGAAAACTGCCGAATTGAAGCTTATTAAACCTGATATCGAGGAGGAAACCGATGACGATCAGCTTTACAAGCTTTGTGCAATTTCACATAGTTTAGGAGGAGCTGCAATGATAATGTATGTTATTACACGAAGGATAGAAGAGAAGCCACACAGACTTTCAAGATTGATTTTATTATCCCCGGCTGGTTTTCATGATGACTCTAACATAGTTTTTTCCGCGGCAGAGATCCTATTAACTTTTATGGCTCCTGTTTTGTCTCGTGTTGTGCCTGCATTCTATATACCTACCCGATTTTTTCGCATGCTTGTCTTTAAGTTAGCTCGGGATCTTCATACCCTACCTGCGGTTGGAGGACTAGTTCAAACTCTAATGAGCTATGTTGTTGGCGGAGACAGCTCAAATTGGGTTGGAGTTCTAGGACTACCTCACTACAACATGAACGACATGCCAGGAGTGTCTTTTCGTGTTGCCCTCCATCTTGCACAGATTATGCGTGTTGGAAAGTTCAGAATGTTCGATTACGGAAACGCATCTGCCAATAGAATGGCTTACGGTTCACCTGAGCCTTTGGACTTGGGTAAACACTACGGACTCATCGACATTCCTGTTGATCTTGTTGCTGGACATAAAGACAAAGTTATAAGACCTTCAATGGTAAAGAGACACTACAGATTGATGAAAAGTGCCGGTGTAAATGTTTCGTATAATCAGTTTGAATATGCACATTTAGACTTCACATTCTCGCACCGCGAAGAACTCTTGTCGTATGTTATGTCCCGCTTGCTTCTTGTTGATCCGAATTCAAAGCATCAAGCTAATCAAAGAGTTGAAAAGTCAGGGCAGAAAGGACAAGATGTAGCTAACAAGTAG
Protein sequence

>Msa0964630

MMQRLVDHAIGVSKESVKTITCESLNNIVRIINGVSALLLALLPGNAKILEGIHGWELRPTFRGPRLPRWMENGASSFNQFIHELSVDSDNSSVEYSSSGEEDSDRYECPPSPASHSSRASEAAFARYNRHQMNWIQYILLWILLPVKLLLRIPLRLLQLAYFVVSKVLCISREKRPSHLHAYKRMQSIKEQFVHRATDRRRGIVEDLHLGTEICIEAVFDVVHKAAHLVLSPSKAFGAICGLFSSHESGIKKIRNPVVDASVSTATLGGEGPASSERKINYESLNTDTRTCQDVITDLGYPYEAINVITADGYILLLERIPRRDARKALFLQHGVFDSSMGWVSNGVVGSPAFAAYDQGYDVYLGNFRGLVSREHVNKNISSRQYWQYSINEHGTEDIPAMIEKIHQVKTAELKLIKPDIEEETDDDQLYKLCAISHSLGGAAMIMYVITRRIEEKPHRLSRLILLSPAGFHDDSNIVFSAAEILLTFMAPVLSRVVPAFYIPTRFFRMLVFKLARDLHTLPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFRVALHLAQIMRVGKFRMFDYGNASANRMAYGSPEPLDLGKHYGLIDIPVDLVAGHKDKVIRPSMVKRHYRLMKSAGVNVSYNQFEYAHLDFTFSHREELLSYVMSRLLLVDPNSKHQANQRVEKSGQKGQDVANK*