Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965160 | XP_003620600.2 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965160 | sp|Q9SZD1|TCX5_ARATH | 56.144 | 529 | 183 | 15 | 43 | 537 | 21 | 534 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965160 | A0A0C3VZM0 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1208 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0965160 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0965160 | Msa1394400 | 0.952172 | 4.288494e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965160 | MtrunA17_Chr6g0485811 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1208 |
| Msa0965160 | MtrunA17_Chr8g0390351 | 65.789 | 646 | 155 | 12 | 1 | 631 | 1 | 595 | 0.0 | 791 |
| Msa0965160 | MtrunA17_Chr3g0139951 | 48.000 | 350 | 157 | 11 | 51 | 385 | 61 | 400 | 1.37e-85 | 273 |
| Msa0965160 | MtrunA17_Chr5g0394661 | 42.073 | 164 | 92 | 2 | 96 | 258 | 456 | 617 | 1.37e-30 | 127 |
| Msa0965160 | MtrunA17_Chr1g0149101 | 47.727 | 132 | 60 | 3 | 130 | 255 | 498 | 626 | 4.54e-29 | 123 |
| Msa0965160 | MtrunA17_Chr1g0205031 | 38.211 | 123 | 67 | 3 | 141 | 258 | 416 | 534 | 1.65e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965160 | AT4G29000.1 | 56.144 | 529 | 183 | 15 | 43 | 537 | 21 | 534 | 0.0 | 532 |
| Msa0965160 | AT2G20110.3 | 49.909 | 549 | 216 | 16 | 45 | 579 | 21 | 524 | 5.48e-166 | 486 |
| Msa0965160 | AT2G20110.1 | 49.909 | 549 | 216 | 16 | 45 | 579 | 21 | 524 | 9.74e-166 | 486 |
| Msa0965160 | AT2G20110.2 | 49.281 | 556 | 216 | 17 | 45 | 579 | 21 | 531 | 7.40e-163 | 479 |
| Msa0965160 | AT5G25790.1 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 1.16e-103 | 322 |
| Msa0965160 | AT5G25790.2 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 2.78e-103 | 323 |
| Msa0965160 | AT5G25790.3 | 41.928 | 446 | 196 | 13 | 90 | 524 | 51 | 444 | 6.04e-101 | 315 |
| Msa0965160 | AT3G16160.1 | 30.935 | 417 | 180 | 13 | 113 | 518 | 43 | 362 | 3.17e-42 | 157 |
| Msa0965160 | AT3G22760.2 | 42.289 | 201 | 83 | 7 | 93 | 266 | 147 | 341 | 8.45e-36 | 141 |
| Msa0965160 | AT3G22760.1 | 42.289 | 201 | 83 | 7 | 93 | 266 | 270 | 464 | 1.42e-35 | 142 |
| Msa0965160 | AT3G22780.1 | 34.016 | 244 | 135 | 6 | 52 | 274 | 312 | 550 | 1.79e-33 | 137 |
| Msa0965160 | AT4G14770.1 | 35.556 | 225 | 120 | 6 | 52 | 259 | 289 | 505 | 2.15e-33 | 136 |
| Msa0965160 | AT4G14770.3 | 35.556 | 225 | 120 | 6 | 52 | 259 | 270 | 486 | 2.34e-33 | 136 |
| Msa0965160 | AT4G14770.2 | 35.556 | 225 | 120 | 6 | 52 | 259 | 269 | 485 | 2.72e-33 | 135 |
| Msa0965160 | AT3G04850.1 | 46.512 | 129 | 68 | 1 | 130 | 257 | 453 | 581 | 2.50e-30 | 127 |
Find 175 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGGCTGCTCGCAATTT+TGG | 0.046264 | 6_3:+92441296 | None:intergenic |
| TTCTCTTACATCACCAATTT+TGG | 0.102587 | 6_3:-92443843 | Msa0965160:five_prime_UTR |
| TTGCACTGCCTTTGCTTCTT+TGG | 0.171967 | 6_3:+92442120 | None:intergenic |
| TCCGGATGAACAACATTCTT+TGG | 0.229319 | 6_3:+92443557 | None:intergenic |
| GATCCAATCAACAATGAAAT+TGG | 0.238430 | 6_3:-92438019 | Msa0965160:CDS |
| AAAATTGTTGGATCCAAAAT+TGG | 0.252570 | 6_3:+92443830 | None:intergenic |
| ATTGATACTGTAGCTGAAAA+TGG | 0.265617 | 6_3:-92437794 | Msa0965160:CDS |
| GCGGCAAATGCTGCCATAAC+TGG | 0.288463 | 6_3:-92440468 | Msa0965160:CDS |
| CAAGCTGCAAAGACGCTTGC+AGG | 0.309609 | 6_3:-92439657 | Msa0965160:intron |
| CCTTCTTTCACTTCAAAGTT+AGG | 0.315523 | 6_3:+92442147 | None:intergenic |
| GAATTTGAAATTGTGAGTTT+TGG | 0.323848 | 6_3:-92443634 | Msa0965160:five_prime_UTR |
| TAAGGAGCTTTGTTCAGTTC+TGG | 0.332795 | 6_3:-92439694 | Msa0965160:CDS |
| TCAGTTCTGGTACTAGTATC+TGG | 0.333159 | 6_3:-92439681 | Msa0965160:CDS |
| TCTCAATAGAGTTATTACTA+TGG | 0.333741 | 6_3:-92438880 | Msa0965160:CDS |
| GCAACAGCAGGTGGTTCAAC+AGG | 0.346703 | 6_3:-92443396 | Msa0965160:CDS |
| TTAGGTCTTGATCTTGGTTT+GGG | 0.348976 | 6_3:+92442165 | None:intergenic |
| AGAGAGAGAAAGTGAGAGAA+AGG | 0.353781 | 6_3:+92443897 | None:intergenic |
| TTTCCAATTTCATTGTTGAT+TGG | 0.359965 | 6_3:+92438016 | None:intergenic |
| AAGTGAATTAGAGAATAAAA+AGG | 0.370167 | 6_3:-92438041 | Msa0965160:CDS |
| GTTAGGTCTTGATCTTGGTT+TGG | 0.377110 | 6_3:+92442164 | None:intergenic |
| AACACTCTTCTGTGAGGGTT+GGG | 0.378551 | 6_3:-92443292 | Msa0965160:intron |
| TCCGGAATTTGTTACGGTTA+CGG | 0.381935 | 6_3:-92443540 | Msa0965160:CDS |
| AGAGACAAAGTGTTCTTCAT+TGG | 0.385382 | 6_3:-92438068 | Msa0965160:CDS |
| ATTACTATGGGAGAGATAAA+TGG | 0.386685 | 6_3:-92438867 | Msa0965160:intron |
| TGCGGCTGCAACGGCGGCTG+CGG | 0.391234 | 6_3:-92443516 | Msa0965160:CDS |
| GCTGCCATAACTGGAGCTAT+TGG | 0.394392 | 6_3:-92440459 | Msa0965160:CDS |
| GCCGTAACCGTAACAAATTC+CGG | 0.395159 | 6_3:+92443539 | None:intergenic |
| CTCAGGGAGCACGCGATAGC+AGG | 0.397812 | 6_3:-92441278 | Msa0965160:CDS |
| CAAAATTGCGAGCAGCCCTC+AGG | 0.414226 | 6_3:-92441295 | Msa0965160:CDS |
| GTGGAATTTGAACAATTTGA+AGG | 0.421018 | 6_3:-92443656 | Msa0965160:five_prime_UTR |
| CCGAAAAGACCGATGTCTCC+TGG | 0.421935 | 6_3:-92439074 | Msa0965160:CDS |
| AAATTGCGAAGATGTATTGC+AGG | 0.422987 | 6_3:+92438974 | None:intergenic |
| AGCATTCACAGTACTTCTTA+AGG | 0.425540 | 6_3:+92440613 | None:intergenic |
| TCAAAGTTAGGTCTTGATCT+TGG | 0.425628 | 6_3:+92442159 | None:intergenic |
| CTCAATAGAGTTATTACTAT+GGG | 0.427779 | 6_3:-92438879 | Msa0965160:CDS |
| ATCAAAGAAAAGAAAAGGTC+AGG | 0.431936 | 6_3:-92440409 | Msa0965160:CDS |
| CTGCAAGCGTCTTTGCAGCT+TGG | 0.434786 | 6_3:+92439658 | None:intergenic |
| TGTCCCGGCTTGCTAATTGA+TGG | 0.441456 | 6_3:+92440357 | None:intergenic |
| CGTGGAACAAATCCAACATT+AGG | 0.442565 | 6_3:-92439852 | Msa0965160:CDS |
| TCCAAAGAATGTTGTTCATC+CGG | 0.443750 | 6_3:-92443558 | Msa0965160:CDS |
| GTCCATCAAAATTAAAGTAC+AGG | 0.444356 | 6_3:-92439824 | Msa0965160:intron |
| GAGAGAGAAAGTGAGAGAAA+GGG | 0.448529 | 6_3:+92443898 | None:intergenic |
| AATTAGCAAGCCGGGACAAC+AGG | 0.448943 | 6_3:-92440352 | Msa0965160:intron |
| GAGTGTCACGGTGCAGAAAC+CGG | 0.453981 | 6_3:-92443372 | Msa0965160:CDS |
| ATTTGTTACGGTTACGGCTG+CGG | 0.454985 | 6_3:-92443534 | Msa0965160:CDS |
| GTCTGCACCGGCGTTGGCAC+CGG | 0.455906 | 6_3:+92443320 | None:intergenic |
| TCTGTCACTCCTTGTCCGTC+AGG | 0.456188 | 6_3:+92438951 | None:intergenic |
| GCATGGGTCGTTTGCCCGAT+GGG | 0.456405 | 6_3:+92438996 | None:intergenic |
| GGCAAACCACCCACTCCAAC+CGG | 0.458936 | 6_3:+92443353 | None:intergenic |
| TGAGGGAAGTGAAGAGAGAC+AGG | 0.459062 | 6_3:-92440535 | Msa0965160:CDS |
| CTTGCTAATTGATGGATCCT+TGG | 0.460693 | 6_3:+92440365 | None:intergenic |
| GAGAGACAGGCTTTGTTTCG+TGG | 0.462723 | 6_3:-92440522 | Msa0965160:CDS |
| GAGAAAGGGTTTGAAGAAGA+AGG | 0.463633 | 6_3:+92443912 | None:intergenic |
| TGACAGCTGCCTCTCCCATC+GGG | 0.464632 | 6_3:-92439010 | Msa0965160:CDS |
| GAACTGAACAAAGCTCCTTA+AGG | 0.466976 | 6_3:+92439697 | None:intergenic |
| CAAAGCTGCATTTCCACCTA+TGG | 0.469835 | 6_3:-92437942 | Msa0965160:CDS |
| TTTCAGCTACAGTATCAATA+GGG | 0.473556 | 6_3:+92437798 | None:intergenic |
| CATGGACTGCAAGAACTTTG+AGG | 0.474484 | 6_3:-92440553 | Msa0965160:CDS |
| GTTGGCACCGGTACCGGTAT+CGG | 0.477193 | 6_3:+92443332 | None:intergenic |
| CAACACTCTTCTGTGAGGGT+TGG | 0.479410 | 6_3:-92443293 | Msa0965160:CDS |
| TACGGCTGCGGCTGCAACGG+CGG | 0.479468 | 6_3:-92443522 | Msa0965160:CDS |
| ACCGGCGTTGGCACCGGTAC+CGG | 0.479675 | 6_3:+92443326 | None:intergenic |
| AACACCTGCAGTTCCACCTA+TGG | 0.480803 | 6_3:-92437843 | Msa0965160:CDS |
| CAATAAATGTAGGAGGAGGC+TGG | 0.481773 | 6_3:-92440693 | Msa0965160:intron |
| AGCGTAATCCAAATGCATTT+AGG | 0.482400 | 6_3:-92441320 | Msa0965160:CDS |
| AACACCTGCAGTTCCACCTA+TGG | 0.482822 | 6_3:-92437909 | Msa0965160:CDS |
| TGTACAGCCACATCACCTTA+AGG | 0.485350 | 6_3:-92439712 | Msa0965160:CDS |
| ATGACAGCTGCCTCTCCCAT+CGG | 0.486923 | 6_3:-92439011 | Msa0965160:CDS |
| TGTTCATCCGGAATTTGTTA+CGG | 0.488179 | 6_3:-92443546 | Msa0965160:CDS |
| CCATCTGAACATGAATTACC+AGG | 0.490481 | 6_3:+92439107 | None:intergenic |
| ATCTTGTTCGTCACACATCA+AGG | 0.491361 | 6_3:+92439043 | None:intergenic |
| AGTGGGTGGTTTGCCGATAC+CGG | 0.492641 | 6_3:-92443345 | Msa0965160:CDS |
| CAGAACAAAGAACGTTGGCT+TGG | 0.493572 | 6_3:+92440589 | None:intergenic |
| TACTGAGATAGTACATCAGC+AGG | 0.501027 | 6_3:-92437987 | Msa0965160:CDS |
| AAGGTCAGGAACTCTTCTTA+TGG | 0.502814 | 6_3:-92440395 | Msa0965160:CDS |
| TGGAGAATCCAAGCTGAAGA+TGG | 0.503658 | 6_3:-92437774 | Msa0965160:CDS |
| GGTCGTTTGCCCGATGGGAG+AGG | 0.505246 | 6_3:+92439001 | None:intergenic |
| ATGGACTGCAAGAACTTTGA+GGG | 0.505326 | 6_3:-92440552 | Msa0965160:CDS |
| ATGTAGGAGGAGGCTGGGGA+AGG | 0.505481 | 6_3:-92440687 | Msa0965160:intron |
| TGCGACTGCGACGGCGTGGT+TGG | 0.505644 | 6_3:-92443486 | Msa0965160:CDS |
| GGATGAACAACATTCTTTGG+AGG | 0.510272 | 6_3:+92443560 | None:intergenic |
| TTCTGAGAATTGTAGATGCA+TGG | 0.511900 | 6_3:-92440571 | Msa0965160:CDS |
| GGTTACGGCTGCGGCTGCAA+CGG | 0.511927 | 6_3:-92443525 | Msa0965160:CDS |
| GGTGTTGAAGTTGCGGCCAT+AGG | 0.512968 | 6_3:+92437827 | None:intergenic |
| TGGTTTGCCGATACCGGTAC+CGG | 0.513091 | 6_3:-92443339 | Msa0965160:CDS |
| GTTCCACGAGCACTTGAGAC+AGG | 0.513110 | 6_3:+92439867 | None:intergenic |
| CGAAAAGACCGATGTCTCCT+GGG | 0.513429 | 6_3:-92439073 | Msa0965160:CDS |
| CTGATGTACTATCTCAGTAC+TGG | 0.516199 | 6_3:+92437991 | None:intergenic |
| TGTTGAACCACCTGCTGTTG+CGG | 0.517452 | 6_3:+92443398 | None:intergenic |
| GAAGCTGATGAGGAGGGTGC+TGG | 0.517647 | 6_3:+92439891 | None:intergenic |
| GGAAGAATCGTAATCGGTGG+TGG | 0.518893 | 6_3:-92443675 | Msa0965160:five_prime_UTR |
| GATGGACTCTGACCTAATGT+TGG | 0.519331 | 6_3:+92439840 | None:intergenic |
| CACATCAAGGCTAAAGTCCC+AGG | 0.519918 | 6_3:+92439056 | None:intergenic |
| GCAGTCGAAACCGCAACAGC+AGG | 0.525250 | 6_3:-92443408 | Msa0965160:CDS |
| CCAGCATCAAAGAAAAGAAA+AGG | 0.526932 | 6_3:-92440414 | Msa0965160:CDS |
| TTTGAGGGAAGAATCGTAAT+CGG | 0.527607 | 6_3:-92443681 | Msa0965160:five_prime_UTR |
| ACTGGAGCTATTGGTTCCTA+CGG | 0.529339 | 6_3:-92440450 | Msa0965160:CDS |
| GCGAAGATGTATTGCAGGCA+TGG | 0.531295 | 6_3:+92438979 | None:intergenic |
| GGTGTTGAAGTTGTGGCCAT+AGG | 0.532141 | 6_3:+92437893 | None:intergenic |
| CAGAAACCGGTTGGAGTGGG+TGG | 0.532614 | 6_3:-92443359 | Msa0965160:CDS |
| AATAAATGTAGGAGGAGGCT+GGG | 0.532720 | 6_3:-92440692 | Msa0965160:intron |
| GGTGTTGAAGTTGCGGCCAT+AGG | 0.535923 | 6_3:+92437926 | None:intergenic |
| GGTGCAGAAACCGGTTGGAG+TGG | 0.539729 | 6_3:-92443363 | Msa0965160:CDS |
| GGAACCAATAGCTCCAGTTA+TGG | 0.541771 | 6_3:+92440455 | None:intergenic |
| AAAATTGCGAGCAGCCCTCA+GGG | 0.542064 | 6_3:-92441294 | Msa0965160:CDS |
| GCTCTTGAGTTGATGAAGCA+AGG | 0.542763 | 6_3:+92439213 | None:intergenic |
| GAGTGTTGAATTGTCTGCAC+CGG | 0.543822 | 6_3:+92443308 | None:intergenic |
| CTCTTGAGTTGATGAAGCAA+GGG | 0.545085 | 6_3:+92439214 | None:intergenic |
| CCTAACTTTGAAGTGAAAGA+AGG | 0.546661 | 6_3:-92442147 | Msa0965160:CDS |
| AAGGTACTCCAAAGAAGCAA+AGG | 0.548812 | 6_3:-92442128 | Msa0965160:CDS |
| GGATCCATCAATTAGCAAGC+CGG | 0.552604 | 6_3:-92440361 | Msa0965160:CDS |
| GATCCATCAATTAGCAAGCC+GGG | 0.555761 | 6_3:-92440360 | Msa0965160:CDS |
| CAACAGCAGGTGGTTCAACA+GGG | 0.557867 | 6_3:-92443395 | Msa0965160:CDS |
| GAGAGAGAGAAAGTGTGTGA+AGG | 0.559818 | 6_3:+92443869 | None:intergenic |
| GGCTGCAAATGCGACTGCGA+CGG | 0.559897 | 6_3:-92443495 | Msa0965160:CDS |
| ACCGGTACCGGTGCCAACGC+CGG | 0.561379 | 6_3:-92443327 | Msa0965160:CDS |
| TGAGACAGGTGAAGCTGATG+AGG | 0.562009 | 6_3:+92439881 | None:intergenic |
| CTTCTTATGGCCTACAGCCA+AGG | 0.564439 | 6_3:-92440382 | Msa0965160:CDS |
| GGTTTGAAGAAGAAGGAAGA+AGG | 0.565910 | 6_3:+92443919 | None:intergenic |
| CTGCTATCGCGTGCTCCCTG+AGG | 0.567725 | 6_3:+92441279 | None:intergenic |
| GTTGAAGTTGCGGCCATAGG+TGG | 0.568296 | 6_3:+92437830 | None:intergenic |
| GTTGAAGTTGCGGCCATAGG+TGG | 0.568296 | 6_3:+92437929 | None:intergenic |
| GACCACAGGTGTTGAAGTTG+CGG | 0.569006 | 6_3:+92437820 | None:intergenic |
| CGAAGATGTATTGCAGGCAT+GGG | 0.569090 | 6_3:+92438980 | None:intergenic |
| AAAAGAAGTTGACGTTGAGA+AGG | 0.569097 | 6_3:-92439177 | Msa0965160:CDS |
| TTTGACATCACCATTGCTAG+TGG | 0.569409 | 6_3:+92437961 | None:intergenic |
| GTGCAGAAACCGGTTGGAGT+GGG | 0.569804 | 6_3:-92443362 | Msa0965160:CDS |
| TCGCAATTTCCTGACGGACA+AGG | 0.572247 | 6_3:-92438960 | Msa0965160:CDS |
| AACTGCAGGTGTTGAAGTTG+TGG | 0.572999 | 6_3:+92437886 | None:intergenic |
| GTTGAAGTTGTGGCAATATG+TGG | 0.573718 | 6_3:+92437863 | None:intergenic |
| CAGCAGGAAGCCACTAGCAA+TGG | 0.574156 | 6_3:-92437971 | Msa0965160:CDS |
| GCGGCCATAGGTGGAACTGC+AGG | 0.576630 | 6_3:+92437839 | None:intergenic |
| TTAATGGCGGAAGGTGAAGG+AGG | 0.577062 | 6_3:-92443590 | Msa0965160:CDS |
| TCAGGGAGCACGCGATAGCA+GGG | 0.577678 | 6_3:-92441277 | Msa0965160:intron |
| TCACCTGTCTCAAGTGCTCG+TGG | 0.579407 | 6_3:-92439870 | Msa0965160:CDS |
| GCGTCGGGAATATATTGTGA+TGG | 0.580424 | 6_3:-92441417 | Msa0965160:CDS |
| CCTGGTAATTCATGTTCAGA+TGG | 0.580857 | 6_3:-92439107 | Msa0965160:CDS |
| AGTTGACGTTGAGAAGGCTA+TGG | 0.583343 | 6_3:-92439171 | Msa0965160:CDS |
| AATATTAATAAAACATCACA+AGG | 0.586663 | 6_3:-92440661 | Msa0965160:CDS |
| CAAACAGATAAAATCAGCCC+TGG | 0.591581 | 6_3:-92439125 | Msa0965160:CDS |
| TGAATTGTCTGCACCGGCGT+TGG | 0.592942 | 6_3:+92443314 | None:intergenic |
| GTCACGGTGCAGAAACCGGT+TGG | 0.593017 | 6_3:-92443368 | Msa0965160:CDS |
| AACTGCAGGTGTTGAAGTTG+TGG | 0.593897 | 6_3:+92437853 | None:intergenic |
| AATTCAACACTCTTCTGTGA+GGG | 0.594410 | 6_3:-92443297 | Msa0965160:CDS |
| AACTGCAGGTGTTGAAGTTG+CGG | 0.594681 | 6_3:+92437919 | None:intergenic |
| ATTGATGGATCCTTGGCTGT+AGG | 0.596299 | 6_3:+92440372 | None:intergenic |
| GTGGCCATAGGTGGAACTGC+AGG | 0.599317 | 6_3:+92437905 | None:intergenic |
| ATAAATGTAGGAGGAGGCTG+GGG | 0.600017 | 6_3:-92440691 | Msa0965160:intron |
| GTTGAAGTTGTGGCCATAGG+TGG | 0.604086 | 6_3:+92437896 | None:intergenic |
| CAAAGCTCCTTAAGGTGATG+TGG | 0.604962 | 6_3:+92439705 | None:intergenic |
| CAATGTGTATCTTCAGCAAG+CGG | 0.607593 | 6_3:-92440487 | Msa0965160:CDS |
| GTCGAAACCGCAACAGCAGG+TGG | 0.610823 | 6_3:-92443405 | Msa0965160:CDS |
| ACAGTATCAATAGGGACCAC+AGG | 0.611364 | 6_3:+92437806 | None:intergenic |
| GCTAAAGTCCCAGGAGACAT+CGG | 0.613977 | 6_3:+92439065 | None:intergenic |
| GTGGCAATATGTGGAACTGC+AGG | 0.618160 | 6_3:+92437872 | None:intergenic |
| TGTCAGGTGAACCTTGTCAA+AGG | 0.626849 | 6_3:-92439915 | Msa0965160:intron |
| TGCCTCGCTAGCTTCTTCGA+CGG | 0.628871 | 6_3:+92443458 | None:intergenic |
| ACATCTTCGCAATTTCCTGA+CGG | 0.629950 | 6_3:-92438966 | Msa0965160:CDS |
| ATTCTCAGAACAAAGAACGT+TGG | 0.631850 | 6_3:+92440584 | None:intergenic |
| TATTAATAAAACATCACAAG+GGG | 0.635016 | 6_3:-92440659 | Msa0965160:CDS |
| GACAGGTGAAGCTGATGAGG+AGG | 0.635684 | 6_3:+92439884 | None:intergenic |
| GGTTCAACAGGGGAGTGTCA+CGG | 0.636580 | 6_3:-92443384 | Msa0965160:CDS |
| AGGGTGCTGGACCTTTGACA+AGG | 0.645508 | 6_3:+92439904 | None:intergenic |
| TACCGTCGAAGAAGCTAGCG+AGG | 0.646483 | 6_3:-92443460 | Msa0965160:CDS |
| GGCCGCAACTTCAACACCTG+TGG | 0.647452 | 6_3:-92437822 | Msa0965160:CDS |
| AACAGCAGGTGGTTCAACAG+GGG | 0.653532 | 6_3:-92443394 | Msa0965160:CDS |
| CAAATGCGACTGCGACGGCG+TGG | 0.660370 | 6_3:-92443490 | Msa0965160:CDS |
| CAATTCAACACTCTTCTGTG+AGG | 0.662812 | 6_3:-92443298 | Msa0965160:CDS |
| CAATGAAGCTGCTAGACGAG+AGG | 0.668933 | 6_3:-92441361 | Msa0965160:CDS |
| TGGAGGTGATGAAAAGCCGT+AGG | 0.674319 | 6_3:+92440434 | None:intergenic |
| GAGGGAAGAATCGTAATCGG+TGG | 0.677249 | 6_3:-92443678 | Msa0965160:five_prime_UTR |
| ATATTAATAAAACATCACAA+GGG | 0.678177 | 6_3:-92440660 | Msa0965160:CDS |
| CATCTGAACATGAATTACCA+GGG | 0.687920 | 6_3:+92439108 | None:intergenic |
| TGACGGACAAGGAGTGACAG+AGG | 0.696697 | 6_3:-92438949 | Msa0965160:CDS |
| ACAGGTGAAGCTGATGAGGA+GGG | 0.698375 | 6_3:+92439885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTTATGTCTTTAA+AGG | - | chr6_3:92442104-92442123 | Msa0965160:CDS | 10.0% |
| !!! | AAAAAGTTTTTGAAAATTGT+TGG | + | chr6_3:92437894-92437913 | None:intergenic | 15.0% |
| !!! | TGAATTTTTTTAGAAATTTG+AGG | - | chr6_3:92438012-92438031 | Msa0965160:CDS | 15.0% |
| !!! | GAATTTTTTTAGAAATTTGA+GGG | - | chr6_3:92438013-92438032 | Msa0965160:CDS | 15.0% |
| !!! | TTTAATTGTATACACATTTT+AGG | - | chr6_3:92439012-92439031 | Msa0965160:CDS | 15.0% |
| !! | TAAAAAGGAAATATATTCTT+TGG | - | chr6_3:92440140-92440159 | Msa0965160:intron | 15.0% |
| !!! | TTTTATATGATAGAACATTA+TGG | - | chr6_3:92440629-92440648 | Msa0965160:CDS | 15.0% |
| !! | TCTTAAAAGTTATAGAAAAA+AGG | - | chr6_3:92440899-92440918 | Msa0965160:intron | 15.0% |
| !! | AATATTAATAAAACATCACA+AGG | - | chr6_3:92441048-92441067 | Msa0965160:intron | 15.0% |
| !! | ATATTAATAAAACATCACAA+GGG | - | chr6_3:92441049-92441068 | Msa0965160:intron | 15.0% |
| !!! | ACATAAAAATAATTGATGAT+TGG | + | chr6_3:92442098-92442117 | None:intergenic | 15.0% |
| !! | AATTATGATAAAGTTTCATA+CGG | + | chr6_3:92442295-92442314 | None:intergenic | 15.0% |
| !! | ATTAAATTAAAAATAAGGAG+AGG | + | chr6_3:92442877-92442896 | None:intergenic | 15.0% |
| !!! | TATATGTTTTTCAAAACTTA+GGG | + | chr6_3:92442990-92443009 | None:intergenic | 15.0% |
| !!! | TTATATGTTTTTCAAAACTT+AGG | + | chr6_3:92442991-92443010 | None:intergenic | 15.0% |
| !!! | TTACGAAGAATTTCAATTTT+TGG | + | chr6_3:92437930-92437949 | None:intergenic | 20.0% |
| !!! | AAATTGTTGTGTTGTTTTAA+TGG | - | chr6_3:92438103-92438122 | Msa0965160:intron | 20.0% |
| !! | TTGAATTTGAAGAAAATTTG+TGG | - | chr6_3:92438477-92438496 | Msa0965160:intron | 20.0% |
| !! | TTAGTTAGAATCAATTATAG+AGG | - | chr6_3:92438824-92438843 | Msa0965160:intron | 20.0% |
| !! | TTGTTTCCTGAAAAATTAAA+GGG | + | chr6_3:92439518-92439537 | None:intergenic | 20.0% |
| !! | TTTGTTTATATAGTATGCAT+AGG | - | chr6_3:92440042-92440061 | Msa0965160:intron | 20.0% |
| !! | TTAGCTGAATTATCATAAAA+AGG | - | chr6_3:92440125-92440144 | Msa0965160:intron | 20.0% |
| !! | TTGGAATCAAAATAACTTAT+AGG | + | chr6_3:92440536-92440555 | None:intergenic | 20.0% |
| !!! | ACTTTTAAGATCATATAAAG+AGG | + | chr6_3:92440889-92440908 | None:intergenic | 20.0% |
| !! | TATTAATAAAACATCACAAG+GGG | - | chr6_3:92441050-92441069 | Msa0965160:intron | 20.0% |
| !! | GTTTATTTAAACTTAGGTAT+TGG | - | chr6_3:92441417-92441436 | Msa0965160:CDS | 20.0% |
| !!! | GAAATTTTTTTTAATGTGTC+AGG | - | chr6_3:92441778-92441797 | Msa0965160:intron | 20.0% |
| !! | AAGAATATCAGAAAACATAA+CGG | + | chr6_3:92442131-92442150 | None:intergenic | 20.0% |
| !! | AAACAAAAATTGATGAGAAA+AGG | + | chr6_3:92442415-92442434 | None:intergenic | 20.0% |
| !!! | ATATGTTTTTCAAAACTTAG+GGG | + | chr6_3:92442989-92443008 | None:intergenic | 20.0% |
| !!! | ATTGAAAATTTTCATGCTTT+GGG | + | chr6_3:92443050-92443069 | None:intergenic | 20.0% |
| !!! | AATTGAAAATTTTCATGCTT+TGG | + | chr6_3:92443051-92443070 | None:intergenic | 20.0% |
| !!! | AGCAATTTTTAACAATATAG+TGG | + | chr6_3:92443602-92443621 | None:intergenic | 20.0% |
| !! | AAGTGAATTAGAGAATAAAA+AGG | - | chr6_3:92443668-92443687 | Msa0965160:five_prime_UTR | 20.0% |
| ! | AAAATTGTTGGATCCAAAAT+TGG | + | chr6_3:92437882-92437901 | None:intergenic | 25.0% |
| !!! | GAATTTGAAATTGTGAGTTT+TGG | - | chr6_3:92438075-92438094 | Msa0965160:intron | 25.0% |
| !!! | TGTGGTTTTGAATTTTTGAA+AGG | - | chr6_3:92438495-92438514 | Msa0965160:intron | 25.0% |
| !!! | GTGGTTTTGAATTTTTGAAA+GGG | - | chr6_3:92438496-92438515 | Msa0965160:intron | 25.0% |
| !!! | TTTTTGAAAGGGTTTTTGTT+TGG | - | chr6_3:92438507-92438526 | Msa0965160:intron | 25.0% |
| ! | ATTCGTTTAAAAATCGTGTT+TGG | - | chr6_3:92438778-92438797 | Msa0965160:intron | 25.0% |
| !!! | CAAAACTTTGGTTTCAATTT+TGG | + | chr6_3:92438906-92438925 | None:intergenic | 25.0% |
| ! | ACAACATACAATCAAAACTT+TGG | + | chr6_3:92438918-92438937 | None:intergenic | 25.0% |
| !!! | GTTTTAGTATTTGAGAATGT+AGG | - | chr6_3:92438988-92439007 | Msa0965160:CDS | 25.0% |
| !!! | TGTATACACATTTTAGGTAA+CGG | - | chr6_3:92439018-92439037 | Msa0965160:CDS | 25.0% |
| ! | ATGTTAGTGTTATGAAATAG+CGG | + | chr6_3:92439383-92439402 | None:intergenic | 25.0% |
| !!! | TAACTACCCTTTAATTTTTC+AGG | - | chr6_3:92439509-92439528 | Msa0965160:intron | 25.0% |
| ! | CTTGTTTCCTGAAAAATTAA+AGG | + | chr6_3:92439519-92439538 | None:intergenic | 25.0% |
| !! | TATATAGTAAAGCATCTAAC+TGG | - | chr6_3:92439887-92439906 | Msa0965160:CDS | 25.0% |
| ! | ACAATTGTGTATGATTAGAT+TGG | - | chr6_3:92440496-92440515 | Msa0965160:CDS | 25.0% |
| !! | AAAACACATTCAAGACTTTT+TGG | + | chr6_3:92440555-92440574 | None:intergenic | 25.0% |
| !!! | AGTCTTGAATGTGTTTTTAT+TGG | - | chr6_3:92440558-92440577 | Msa0965160:CDS | 25.0% |
| !!! | TGTTGTTGTTTAGAAACTTA+AGG | - | chr6_3:92440701-92440720 | Msa0965160:intron | 25.0% |
| !!! | GTTGTTGTTTAGAAACTTAA+GGG | - | chr6_3:92440702-92440721 | Msa0965160:intron | 25.0% |
| !!! | GTTTAATTTTCTGAATTGAC+TGG | - | chr6_3:92440831-92440850 | Msa0965160:intron | 25.0% |
| ! | AGTTATAGAAAAAAGGTTTC+TGG | - | chr6_3:92440906-92440925 | Msa0965160:intron | 25.0% |
| !!! | ATTTCAATTTTTTTGCTGAC+TGG | - | chr6_3:92440985-92441004 | Msa0965160:intron | 25.0% |
| !!! | GGTATTTTGACAATAAATGT+AGG | - | chr6_3:92441006-92441025 | Msa0965160:intron | 25.0% |
| !!! | ATTTTGACAATAAATGTAGG+AGG | - | chr6_3:92441009-92441028 | Msa0965160:intron | 25.0% |
| ! | TACAGGGTTTATTTAAACTT+AGG | - | chr6_3:92441411-92441430 | Msa0965160:CDS | 25.0% |
| !!! | AACTTAGGTATTGGTTAAAT+CGG | - | chr6_3:92441426-92441445 | Msa0965160:CDS | 25.0% |
| ! | ATCGGAGAAATATTAAACAA+CGG | - | chr6_3:92441444-92441463 | Msa0965160:intron | 25.0% |
| !!! | CTTTCTAGTTTTAAATCCTA+AGG | - | chr6_3:92441598-92441617 | Msa0965160:intron | 25.0% |
| !!! | TTAATTTGTCTCTATACCTT+AGG | + | chr6_3:92441617-92441636 | None:intergenic | 25.0% |
| !!! | TACCTGTACTTTAATTTTGA+TGG | + | chr6_3:92441890-92441909 | None:intergenic | 25.0% |
| ! | AATTAAAGTACAGGTAATGT+TGG | - | chr6_3:92441894-92441913 | Msa0965160:intron | 25.0% |
| ! | TGGTTATATGTATGAAATGA+AGG | - | chr6_3:92441914-92441933 | Msa0965160:intron | 25.0% |
| !!! | GCTTACTTGATTATTTTTGT+AGG | - | chr6_3:92441957-92441976 | Msa0965160:intron | 25.0% |
| ! | AGAATATCAGAAAACATAAC+GGG | + | chr6_3:92442130-92442149 | None:intergenic | 25.0% |
| ! | TCTCAATAGAGTTATTACTA+TGG | - | chr6_3:92442829-92442848 | Msa0965160:intron | 25.0% |
| ! | CTCAATAGAGTTATTACTAT+GGG | - | chr6_3:92442830-92442849 | Msa0965160:intron | 25.0% |
| !! | TCATATCGTCATTGTAATTT+TGG | - | chr6_3:92442927-92442946 | Msa0965160:intron | 25.0% |
| ! | TTGCCAAAATGAAAAATTGA+CGG | + | chr6_3:92442961-92442980 | None:intergenic | 25.0% |
| !!! | TATGTTTTTCAAAACTTAGG+GGG | + | chr6_3:92442988-92443007 | None:intergenic | 25.0% |
| !! | TTGAAAATTTTCATGCTTTG+GGG | + | chr6_3:92443049-92443068 | None:intergenic | 25.0% |
| ! | TGAGACTTTGTAATTATCAA+GGG | - | chr6_3:92443159-92443178 | Msa0965160:intron | 25.0% |
| ! | AAAAGTAACTTCTGACTAAA+AGG | + | chr6_3:92443272-92443291 | None:intergenic | 25.0% |
| ! | TTTCCAATTTCATTGTTGAT+TGG | + | chr6_3:92443696-92443715 | None:intergenic | 25.0% |
| ! | TTCTCTTACATCACCAATTT+TGG | - | chr6_3:92437866-92437885 | Msa0965160:CDS | 30.0% |
| GTGGAATTTGAACAATTTGA+AGG | - | chr6_3:92438053-92438072 | Msa0965160:CDS | 30.0% | |
| !!! | TTGTTGTGTTGTTTTAATGG+CGG | - | chr6_3:92438106-92438125 | Msa0965160:intron | 30.0% |
| !! | TGATTTTAATGCGATGTTGA+TGG | - | chr6_3:92438277-92438296 | Msa0965160:intron | 30.0% |
| TTACCTAAATTCACTAAGTG+CGG | + | chr6_3:92439062-92439081 | None:intergenic | 30.0% | |
| CACTTAGTGAATTTAGGTAA+CGG | - | chr6_3:92439062-92439081 | Msa0965160:CDS | 30.0% | |
| CACTCATATGTTAGAAGTTA+CGG | - | chr6_3:92439161-92439180 | Msa0965160:CDS | 30.0% | |
| TATACACTAGTACAGAATTG+TGG | + | chr6_3:92439812-92439831 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTATCTCTCCTT+TGG | - | chr6_3:92440180-92440199 | Msa0965160:intron | 30.0% |
| ! | ATATTGTGAATGTTTTGCGT+CGG | - | chr6_3:92440276-92440295 | Msa0965160:intron | 30.0% |
| !! | GTGTATGATTAGATTGGTTT+AGG | - | chr6_3:92440502-92440521 | Msa0965160:CDS | 30.0% |
| CTTATTCAACTAAGTGATGT+CGG | + | chr6_3:92440674-92440693 | None:intergenic | 30.0% | |
| TTCATTAAGTGTCTGATACA+CGG | + | chr6_3:92440945-92440964 | None:intergenic | 30.0% | |
| ATCAAAGAAAAGAAAAGGTC+AGG | - | chr6_3:92441300-92441319 | Msa0965160:CDS | 30.0% | |
| GTCCATCAAAATTAAAGTAC+AGG | - | chr6_3:92441885-92441904 | Msa0965160:intron | 30.0% | |
| !! | TCTTTTGTTGTATGAATGAC+TGG | - | chr6_3:92442147-92442166 | Msa0965160:CDS | 30.0% |
| TTATGAAAACAGGAAATGCA+TGG | + | chr6_3:92442213-92442232 | None:intergenic | 30.0% | |
| ! | CATTTCCTGTTTTCATAATC+AGG | - | chr6_3:92442215-92442234 | Msa0965160:intron | 30.0% |
| TGATTGTGTGTGCATTATAA+CGG | - | chr6_3:92442253-92442272 | Msa0965160:intron | 30.0% | |
| ! | TCATACGGTGAAGTTTTTAT+TGG | + | chr6_3:92442280-92442299 | None:intergenic | 30.0% |
| !! | ACAATCAATGGTTCTGAAAA+AGG | + | chr6_3:92442388-92442407 | None:intergenic | 30.0% |
| AGAAAAGGAAACACAATCAA+TGG | + | chr6_3:92442400-92442419 | None:intergenic | 30.0% | |
| ATTACTATGGGAGAGATAAA+TGG | - | chr6_3:92442842-92442861 | Msa0965160:intron | 30.0% | |
| ! | AGACCGTCAATTTTTCATTT+TGG | - | chr6_3:92442955-92442974 | Msa0965160:intron | 30.0% |
| AACACTTGTAGAGTAATCAT+TGG | + | chr6_3:92443090-92443109 | None:intergenic | 30.0% | |
| CTGAGACTTTGTAATTATCA+AGG | - | chr6_3:92443158-92443177 | Msa0965160:intron | 30.0% | |
| GAGACTTTGTAATTATCAAG+GGG | - | chr6_3:92443160-92443179 | Msa0965160:intron | 30.0% | |
| AGACTTTGTAATTATCAAGG+GGG | - | chr6_3:92443161-92443180 | Msa0965160:intron | 30.0% | |
| TTCAATAAGCTGAAAGTTGA+AGG | - | chr6_3:92443196-92443215 | Msa0965160:intron | 30.0% | |
| TCAATAAGCTGAAAGTTGAA+GGG | - | chr6_3:92443197-92443216 | Msa0965160:intron | 30.0% | |
| CAATGCCATTAGAAAGAATT+CGG | - | chr6_3:92443346-92443365 | Msa0965160:CDS | 30.0% | |
| GGCTAATGAGAAAATATGAA+GGG | + | chr6_3:92443581-92443600 | None:intergenic | 30.0% | |
| TGGCTAATGAGAAAATATGA+AGG | + | chr6_3:92443582-92443601 | None:intergenic | 30.0% | |
| !! | AACACTTTGTCTCTGAAATT+GGG | + | chr6_3:92443635-92443654 | None:intergenic | 30.0% |
| GATCCAATCAACAATGAAAT+TGG | - | chr6_3:92443690-92443709 | Msa0965160:five_prime_UTR | 30.0% | |
| TTTCAGCTACAGTATCAATA+GGG | + | chr6_3:92443914-92443933 | None:intergenic | 30.0% | |
| ! | TTTTCAGCTACAGTATCAAT+AGG | + | chr6_3:92443915-92443934 | None:intergenic | 30.0% |
| ATTGATACTGTAGCTGAAAA+TGG | - | chr6_3:92443915-92443934 | Msa0965160:five_prime_UTR | 30.0% | |
| TTTGAGGGAAGAATCGTAAT+CGG | - | chr6_3:92438028-92438047 | Msa0965160:CDS | 35.0% | |
| TCCAAAGAATGTTGTTCATC+CGG | - | chr6_3:92438151-92438170 | Msa0965160:intron | 35.0% | |
| !! | TGTTCATCCGGAATTTGTTA+CGG | - | chr6_3:92438163-92438182 | Msa0965160:intron | 35.0% |
| AATTCAACACTCTTCTGTGA+GGG | - | chr6_3:92438412-92438431 | Msa0965160:intron | 35.0% | |
| ! | AAAAGTGAGTTGAACTGAAG+TGG | - | chr6_3:92438739-92438758 | Msa0965160:intron | 35.0% |
| AGGCAAAAGCAATTCTACAT+GGG | - | chr6_3:92438844-92438863 | Msa0965160:intron | 35.0% | |
| ! | TGGTTTCAATTTTGGATGAG+AGG | + | chr6_3:92438898-92438917 | None:intergenic | 35.0% |
| TCTTCACGAGGATTATATGT+TGG | - | chr6_3:92438950-92438969 | Msa0965160:CDS | 35.0% | |
| !!! | TTTAGGTAACGGATTTTCAG+CGG | - | chr6_3:92439029-92439048 | Msa0965160:CDS | 35.0% |
| TAACCGCACTTAGTGAATTT+AGG | - | chr6_3:92439056-92439075 | Msa0965160:CDS | 35.0% | |
| CAGTGAATTATACCATGACT+GGG | + | chr6_3:92439208-92439227 | None:intergenic | 35.0% | |
| ACAGTGAATTATACCATGAC+TGG | + | chr6_3:92439209-92439228 | None:intergenic | 35.0% | |
| TAATTCACTGTTTGCAATCG+CGG | - | chr6_3:92439218-92439237 | Msa0965160:CDS | 35.0% | |
| ! | TTTGACAAGCAACTGTCTTT+TGG | - | chr6_3:92439478-92439497 | Msa0965160:intron | 35.0% |
| TTAGGTCTTGATCTTGGTTT+GGG | + | chr6_3:92439547-92439566 | None:intergenic | 35.0% | |
| TCAAAGTTAGGTCTTGATCT+TGG | + | chr6_3:92439553-92439572 | None:intergenic | 35.0% | |
| CCTTCTTTCACTTCAAAGTT+AGG | + | chr6_3:92439565-92439584 | None:intergenic | 35.0% | |
| !! | CCTAACTTTGAAGTGAAAGA+AGG | - | chr6_3:92439562-92439581 | Msa0965160:intron | 35.0% |
| CATTGAAAGAAACACACACA+CGG | + | chr6_3:92439668-92439687 | None:intergenic | 35.0% | |
| TTTGTACTTCAAAGGACAAC+AGG | + | chr6_3:92439837-92439856 | None:intergenic | 35.0% | |
| !! | CGTGTTGATTTGTACTTCAA+AGG | + | chr6_3:92439845-92439864 | None:intergenic | 35.0% |
| CAAACGATCAATCAGTTGAT+AGG | + | chr6_3:92440015-92440034 | None:intergenic | 35.0% | |
| ACTTCTACTGTGTATAGTCA+TGG | - | chr6_3:92440073-92440092 | Msa0965160:intron | 35.0% | |
| CTTCTACTGTGTATAGTCAT+GGG | - | chr6_3:92440074-92440093 | Msa0965160:intron | 35.0% | |
| GCTAAATTTGAGCCTAACTT+TGG | + | chr6_3:92440110-92440129 | None:intergenic | 35.0% | |
| CATTTGTCATAGCACCTTAT+TGG | - | chr6_3:92440210-92440229 | Msa0965160:intron | 35.0% | |
| ATGAAGTGTAACAGCCAATA+AGG | + | chr6_3:92440227-92440246 | None:intergenic | 35.0% | |
| ! | TATTGTGAATGTTTTGCGTC+GGG | - | chr6_3:92440277-92440296 | Msa0965160:intron | 35.0% |
| AGCGTAATCCAAATGCATTT+AGG | - | chr6_3:92440389-92440408 | Msa0965160:CDS | 35.0% | |
| ! | ATTTTGGGCCTAAATGCATT+TGG | + | chr6_3:92440400-92440419 | None:intergenic | 35.0% |
| ! | TAAGTAGGTCTAGCATTTTG+TGG | - | chr6_3:92440455-92440474 | Msa0965160:CDS | 35.0% |
| TATTGGAGCATATAGCGTTT+AGG | - | chr6_3:92440575-92440594 | Msa0965160:CDS | 35.0% | |
| ATTGGAGCATATAGCGTTTA+GGG | - | chr6_3:92440576-92440595 | Msa0965160:CDS | 35.0% | |
| CGACATCACTTAGTTGAATA+AGG | - | chr6_3:92440672-92440691 | Msa0965160:CDS | 35.0% | |
| TCACTTAGTTGAATAAGGCT+TGG | - | chr6_3:92440677-92440696 | Msa0965160:CDS | 35.0% | |
| TTGTTAGATACGAACGTGAA+TGG | + | chr6_3:92440778-92440797 | None:intergenic | 35.0% | |
| ! | AGAAAAAAGGTTTCTGGACT+TGG | - | chr6_3:92440912-92440931 | Msa0965160:intron | 35.0% |
| TTGACAATAAATGTAGGAGG+AGG | - | chr6_3:92441012-92441031 | Msa0965160:intron | 35.0% | |
| AGCATTCACAGTACTTCTTA+AGG | + | chr6_3:92441099-92441118 | None:intergenic | 35.0% | |
| ATTCTCAGAACAAAGAACGT+TGG | + | chr6_3:92441128-92441147 | None:intergenic | 35.0% | |
| ! | TTCTGAGAATTGTAGATGCA+TGG | - | chr6_3:92441138-92441157 | Msa0965160:intron | 35.0% |
| ! | TTTCTTTTCTTTGATGCTGG+AGG | + | chr6_3:92441295-92441314 | None:intergenic | 35.0% |
| ! | CCTTTTCTTTTCTTTGATGC+TGG | + | chr6_3:92441298-92441317 | None:intergenic | 35.0% |
| CCAGCATCAAAGAAAAGAAA+AGG | - | chr6_3:92441295-92441314 | Msa0965160:CDS | 35.0% | |
| !! | TATTTGCTATCTGCAGACTA+TGG | - | chr6_3:92441695-92441714 | Msa0965160:intron | 35.0% |
| ATCAGACCAGAAAAAAACAG+TGG | - | chr6_3:92442442-92442461 | Msa0965160:intron | 35.0% | |
| !!! | GCTTTTCCACTGTTTTTTTC+TGG | + | chr6_3:92442451-92442470 | None:intergenic | 35.0% |
| !! | ACGTCAACTTCTTTTTGACT+CGG | + | chr6_3:92442527-92442546 | None:intergenic | 35.0% |
| AAAAGAAGTTGACGTTGAGA+AGG | - | chr6_3:92442532-92442551 | Msa0965160:intron | 35.0% | |
| CATCTGAACATGAATTACCA+GGG | + | chr6_3:92442604-92442623 | None:intergenic | 35.0% | |
| AAATTGCGAAGATGTATTGC+AGG | + | chr6_3:92442738-92442757 | None:intergenic | 35.0% | |
| !!! | AAATTTTCATGCTTTGGGGA+AGG | + | chr6_3:92443045-92443064 | None:intergenic | 35.0% |
| TATAGATAGTCTGCTTTCCA+TGG | - | chr6_3:92443323-92443342 | Msa0965160:CDS | 35.0% | |
| GGAATCCGAATTCTTTCTAA+TGG | + | chr6_3:92443354-92443373 | None:intergenic | 35.0% | |
| ATTCGGATTCCCTTCAATAA+AGG | - | chr6_3:92443363-92443382 | Msa0965160:CDS | 35.0% | |
| AGCAGGATACCTTTATTGAA+GGG | + | chr6_3:92443375-92443394 | None:intergenic | 35.0% | |
| AAGCAGGATACCTTTATTGA+AGG | + | chr6_3:92443376-92443395 | None:intergenic | 35.0% | |
| !! | AATAAAGGTATCCTGCTTTC+AGG | - | chr6_3:92443378-92443397 | Msa0965160:CDS | 35.0% |
| ! | GAACGATCTAGATTCAAGTT+CGG | + | chr6_3:92443485-92443504 | None:intergenic | 35.0% |
| !! | GAACACTTTGTCTCTGAAAT+TGG | + | chr6_3:92443636-92443655 | None:intergenic | 35.0% |
| ! | AGAGACAAAGTGTTCTTCAT+TGG | - | chr6_3:92443641-92443660 | Msa0965160:five_prime_UTR | 35.0% |
| GGTTTGAAGAAGAAGGAAGA+AGG | + | chr6_3:92437793-92437812 | None:intergenic | 40.0% | |
| GAGAAAGGGTTTGAAGAAGA+AGG | + | chr6_3:92437800-92437819 | None:intergenic | 40.0% | |
| GAGAGAGAAAGTGAGAGAAA+GGG | + | chr6_3:92437814-92437833 | None:intergenic | 40.0% | |
| AGAGAGAGAAAGTGAGAGAA+AGG | + | chr6_3:92437815-92437834 | None:intergenic | 40.0% | |
| !!! | TGTGTTGTTTTAATGGCGGA+AGG | - | chr6_3:92438110-92438129 | Msa0965160:intron | 40.0% |
| GGATGAACAACATTCTTTGG+AGG | + | chr6_3:92438152-92438171 | None:intergenic | 40.0% | |
| TCCGGATGAACAACATTCTT+TGG | + | chr6_3:92438155-92438174 | None:intergenic | 40.0% | |
| !! | TCCGGAATTTGTTACGGTTA+CGG | - | chr6_3:92438169-92438188 | Msa0965160:intron | 40.0% |
| CAATTCAACACTCTTCTGTG+AGG | - | chr6_3:92438411-92438430 | Msa0965160:intron | 40.0% | |
| GACTGTGTTTAGTGTGTGTT+TGG | - | chr6_3:92438687-92438706 | Msa0965160:intron | 40.0% | |
| GAGGCAAAAGCAATTCTACA+TGG | - | chr6_3:92438843-92438862 | Msa0965160:intron | 40.0% | |
| AATGTATCGTGTTCTTCACG+AGG | - | chr6_3:92438938-92438957 | Msa0965160:CDS | 40.0% | |
| TCACGAGGATTATATGTTGG+CGG | - | chr6_3:92438953-92438972 | Msa0965160:CDS | 40.0% | |
| GCTTGTCAAAACACAAAGAC+AGG | + | chr6_3:92439468-92439487 | None:intergenic | 40.0% | |
| GTTAGGTCTTGATCTTGGTT+TGG | + | chr6_3:92439548-92439567 | None:intergenic | 40.0% | |
| ! | AAGGTACTCCAAAGAAGCAA+AGG | - | chr6_3:92439581-92439600 | Msa0965160:intron | 40.0% |
| CGTGTGTGTGTTTCTTTCAA+TGG | - | chr6_3:92439666-92439685 | Msa0965160:CDS | 40.0% | |
| CTACAGCAAAATTCCTGTCA+TGG | + | chr6_3:92439954-92439973 | None:intergenic | 40.0% | |
| ! | TTTTATCTCTCCTTTGGCAG+AGG | - | chr6_3:92440186-92440205 | Msa0965160:intron | 40.0% |
| AATAAATGTAGGAGGAGGCT+GGG | - | chr6_3:92441017-92441036 | Msa0965160:intron | 40.0% | |
| !! | GGGTGCCATTGTAAAAAATC+TGG | - | chr6_3:92441070-92441089 | Msa0965160:intron | 40.0% |
| !!! | GGCAGCCAGATTTTTTACAA+TGG | + | chr6_3:92441078-92441097 | None:intergenic | 40.0% |
| ! | ATGGACTGCAAGAACTTTGA+GGG | - | chr6_3:92441157-92441176 | Msa0965160:intron | 40.0% |
| CAATGTGTATCTTCAGCAAG+CGG | - | chr6_3:92441222-92441241 | Msa0965160:intron | 40.0% | |
| AAGGTCAGGAACTCTTCTTA+TGG | - | chr6_3:92441314-92441333 | Msa0965160:CDS | 40.0% | |
| ! | CTTGCTAATTGATGGATCCT+TGG | + | chr6_3:92441347-92441366 | None:intergenic | 40.0% |
| ! | GCAAATTTTACCTGTTGTCC+CGG | + | chr6_3:92441370-92441389 | None:intergenic | 40.0% |
| ! | TTACTATGTCGACTAGAGAC+TGG | + | chr6_3:92441475-92441494 | None:intergenic | 40.0% |
| TATCTGCAGACTATGGTGAA+TGG | - | chr6_3:92441702-92441721 | Msa0965160:intron | 40.0% | |
| AGACTATGGTGAATGGTATC+AGG | - | chr6_3:92441709-92441728 | Msa0965160:intron | 40.0% | |
| CGTGGAACAAATCCAACATT+AGG | - | chr6_3:92441857-92441876 | Msa0965160:intron | 40.0% | |
| GAACTGAACAAAGCTCCTTA+AGG | + | chr6_3:92442015-92442034 | None:intergenic | 40.0% | |
| !! | TAAGGAGCTTTGTTCAGTTC+TGG | - | chr6_3:92442015-92442034 | Msa0965160:intron | 40.0% |
| ! | TCAGTTCTGGTACTAGTATC+TGG | - | chr6_3:92442028-92442047 | Msa0965160:intron | 40.0% |
| TGACTGGTATTAACCTAGAG+AGG | - | chr6_3:92442163-92442182 | Msa0965160:CDS | 40.0% | |
| TGGAAAAGTGACACGTATAG+AGG | + | chr6_3:92442193-92442212 | None:intergenic | 40.0% | |
| GTGAGCCTGATTATGAAAAC+AGG | + | chr6_3:92442223-92442242 | None:intergenic | 40.0% | |
| GATTATGCACTAGAGTCTAG+AGG | + | chr6_3:92442321-92442340 | None:intergenic | 40.0% | |
| CTGAGAATCACACTAAGGAT+CGG | - | chr6_3:92442359-92442378 | Msa0965160:intron | 40.0% | |
| !! | CTCTTGAGTTGATGAAGCAA+GGG | + | chr6_3:92442498-92442517 | None:intergenic | 40.0% |
| CAAACAGATAAAATCAGCCC+TGG | - | chr6_3:92442584-92442603 | Msa0965160:intron | 40.0% | |
| CCATCTGAACATGAATTACC+AGG | + | chr6_3:92442605-92442624 | None:intergenic | 40.0% | |
| CCTGGTAATTCATGTTCAGA+TGG | - | chr6_3:92442602-92442621 | Msa0965160:intron | 40.0% | |
| ATCTTGTTCGTCACACATCA+AGG | + | chr6_3:92442669-92442688 | None:intergenic | 40.0% | |
| ACATCTTCGCAATTTCCTGA+CGG | - | chr6_3:92442743-92442762 | Msa0965160:intron | 40.0% | |
| ! | AGGGTCAAAGCACTAAAGAT+AGG | - | chr6_3:92443216-92443235 | Msa0965160:intron | 40.0% |
| ! | GGGTCAAAGCACTAAAGATA+GGG | - | chr6_3:92443217-92443236 | Msa0965160:intron | 40.0% |
| ! | GGTCAAAGCACTAAAGATAG+GGG | - | chr6_3:92443218-92443237 | Msa0965160:intron | 40.0% |
| TAAAGATAGGGGCAATGGTT+TGG | - | chr6_3:92443229-92443248 | Msa0965160:intron | 40.0% | |
| TCTTTCTAATGGCATTGCCA+TGG | + | chr6_3:92443343-92443362 | None:intergenic | 40.0% | |
| ! | AAGGGAAATTGGTGGTCATT+CGG | - | chr6_3:92443405-92443424 | Msa0965160:CDS | 40.0% |
| TATTCACTCAGTCTGGACAT+CGG | + | chr6_3:92443527-92443546 | None:intergenic | 40.0% | |
| ATGTCCAGACTGAGTGAATA+TGG | - | chr6_3:92443527-92443546 | Msa0965160:CDS | 40.0% | |
| TGTCCAGACTGAGTGAATAT+GGG | - | chr6_3:92443528-92443547 | Msa0965160:CDS | 40.0% | |
| CTGATGTACTATCTCAGTAC+TGG | + | chr6_3:92443721-92443740 | None:intergenic | 40.0% | |
| TACTGAGATAGTACATCAGC+AGG | - | chr6_3:92443722-92443741 | Msa0965160:five_prime_UTR | 40.0% | |
| TTTGACATCACCATTGCTAG+TGG | + | chr6_3:92443751-92443770 | None:intergenic | 40.0% | |
| GTTGAAGTTGTGGCAATATG+TGG | + | chr6_3:92443849-92443868 | None:intergenic | 40.0% | |
| ! | CTCTTTTTCCATCTTCAGCT+TGG | + | chr6_3:92443946-92443965 | None:intergenic | 40.0% |
| ! | GAGAGAGAGAAAGTGTGTGA+AGG | + | chr6_3:92437843-92437862 | None:intergenic | 45.0% |
| !! | GTTTTAATGGCGGAAGGTGA+AGG | - | chr6_3:92438116-92438135 | Msa0965160:intron | 45.0% |
| GCCGTAACCGTAACAAATTC+CGG | + | chr6_3:92438173-92438192 | None:intergenic | 45.0% | |
| ! | ATTTGTTACGGTTACGGCTG+CGG | - | chr6_3:92438175-92438194 | Msa0965160:intron | 45.0% |
| !! | GAGTGTTGAATTGTCTGCAC+CGG | + | chr6_3:92438404-92438423 | None:intergenic | 45.0% |
| AACACTCTTCTGTGAGGGTT+GGG | - | chr6_3:92438417-92438436 | Msa0965160:intron | 45.0% | |
| CACGAGGATTATATGTTGGC+GGG | - | chr6_3:92438954-92438973 | Msa0965160:CDS | 45.0% | |
| GTTACGGCTTGAAGTGAAGT+AGG | - | chr6_3:92439177-92439196 | Msa0965160:CDS | 45.0% | |
| GAACAGAGTGTGTCAAACAG+CGG | + | chr6_3:92439306-92439325 | None:intergenic | 45.0% | |
| TTGCACTGCCTTTGCTTCTT+TGG | + | chr6_3:92439592-92439611 | None:intergenic | 45.0% | |
| AGTGTGTGCATAGCATGTAC+TGG | - | chr6_3:92439732-92439751 | Msa0965160:CDS | 45.0% | |
| GGGAAATTCATACCCACTGT+GGG | + | chr6_3:92439914-92439933 | None:intergenic | 45.0% | |
| AATTCCTGTCATGGCAAGGT+CGG | + | chr6_3:92439945-92439964 | None:intergenic | 45.0% | |
| GCAAAATTCCTGTCATGGCA+AGG | + | chr6_3:92439949-92439968 | None:intergenic | 45.0% | |
| GTATAGTCATGGGTTTCCCA+TGG | - | chr6_3:92440084-92440103 | Msa0965160:intron | 45.0% | |
| TTGAGCCTAACTTTGGCCAT+GGG | + | chr6_3:92440103-92440122 | None:intergenic | 45.0% | |
| TTTGAGCCTAACTTTGGCCA+TGG | + | chr6_3:92440104-92440123 | None:intergenic | 45.0% | |
| TGACAAATGACCTCTGCCAA+AGG | + | chr6_3:92440199-92440218 | None:intergenic | 45.0% | |
| GCGTCGGGAATATATTGTGA+TGG | - | chr6_3:92440292-92440311 | Msa0965160:intron | 45.0% | |
| ! | TAGGTCTAGCATTTTGTGGC+AGG | - | chr6_3:92440459-92440478 | Msa0965160:CDS | 45.0% |
| ! | ACTAAGTGATGTCGGCTACA+TGG | + | chr6_3:92440666-92440685 | None:intergenic | 45.0% |
| TGCACATCTTCGCAAGAAGT+TGG | - | chr6_3:92440798-92440817 | Msa0965160:intron | 45.0% | |
| CATCTTCGCAAGAAGTTGGA+TGG | - | chr6_3:92440802-92440821 | Msa0965160:intron | 45.0% | |
| GCAAGAAGTTGGATGGTTTC+TGG | - | chr6_3:92440809-92440828 | Msa0965160:intron | 45.0% | |
| CAATAAATGTAGGAGGAGGC+TGG | - | chr6_3:92441016-92441035 | Msa0965160:intron | 45.0% | |
| ATAAATGTAGGAGGAGGCTG+GGG | - | chr6_3:92441018-92441037 | Msa0965160:intron | 45.0% | |
| ! | CAGAACAAAGAACGTTGGCT+TGG | + | chr6_3:92441123-92441142 | None:intergenic | 45.0% |
| ! | CATGGACTGCAAGAACTTTG+AGG | - | chr6_3:92441156-92441175 | Msa0965160:intron | 45.0% |
| GGAACCAATAGCTCCAGTTA+TGG | + | chr6_3:92441257-92441276 | None:intergenic | 45.0% | |
| !! | ACTGGAGCTATTGGTTCCTA+CGG | - | chr6_3:92441259-92441278 | Msa0965160:intron | 45.0% |
| ! | ATTGATGGATCCTTGGCTGT+AGG | + | chr6_3:92441340-92441359 | None:intergenic | 45.0% |
| GGATCCATCAATTAGCAAGC+CGG | - | chr6_3:92441348-92441367 | Msa0965160:CDS | 45.0% | |
| GATCCATCAATTAGCAAGCC+GGG | - | chr6_3:92441349-92441368 | Msa0965160:CDS | 45.0% | |
| GCTCATTGCACAAGTAGTAC+TGG | - | chr6_3:92441388-92441407 | Msa0965160:CDS | 45.0% | |
| !! | TGCACAAGTAGTACTGGTAC+AGG | - | chr6_3:92441394-92441413 | Msa0965160:CDS | 45.0% |
| !! | GCACAAGTAGTACTGGTACA+GGG | - | chr6_3:92441395-92441414 | Msa0965160:CDS | 45.0% |
| TGTCAGGTGAACCTTGTCAA+AGG | - | chr6_3:92441794-92441813 | Msa0965160:intron | 45.0% | |
| ! | GATGGACTCTGACCTAATGT+TGG | + | chr6_3:92441872-92441891 | None:intergenic | 45.0% |
| TGTACAGCCACATCACCTTA+AGG | - | chr6_3:92441997-92442016 | Msa0965160:intron | 45.0% | |
| CAAAGCTCCTTAAGGTGATG+TGG | + | chr6_3:92442007-92442026 | None:intergenic | 45.0% | |
| GTATAGAGGAAAGCCTCTCT+AGG | + | chr6_3:92442179-92442198 | None:intergenic | 45.0% | |
| CAGAGCTGAGAATCACACTA+AGG | - | chr6_3:92442354-92442373 | Msa0965160:intron | 45.0% | |
| !! | GCTCTTGAGTTGATGAAGCA+AGG | + | chr6_3:92442499-92442518 | None:intergenic | 45.0% |
| AGTTGACGTTGAGAAGGCTA+TGG | - | chr6_3:92442538-92442557 | Msa0965160:intron | 45.0% | |
| CGAAGATGTATTGCAGGCAT+GGG | + | chr6_3:92442732-92442751 | None:intergenic | 45.0% | |
| AGCACTAAAGATAGGGGCAA+TGG | - | chr6_3:92443224-92443243 | Msa0965160:intron | 45.0% | |
| TTTCAGGCAGCAAGGGAAAT+TGG | - | chr6_3:92443394-92443413 | Msa0965160:CDS | 45.0% | |
| CGGTAGTCATTCGATCAAGA+TGG | + | chr6_3:92443507-92443526 | None:intergenic | 45.0% | |
| GTCCAGACTGAGTGAATATG+GGG | - | chr6_3:92443529-92443548 | Msa0965160:CDS | 45.0% | |
| TTCCCCATATTCACTCAGTC+TGG | + | chr6_3:92443534-92443553 | None:intergenic | 45.0% | |
| ATGGGGAATCCATGACTACT+AGG | - | chr6_3:92443546-92443565 | Msa0965160:CDS | 45.0% | |
| TGGGGAATCCATGACTACTA+GGG | - | chr6_3:92443547-92443566 | Msa0965160:CDS | 45.0% | |
| ATGTAGCTCCCTAGTAGTCA+TGG | + | chr6_3:92443558-92443577 | None:intergenic | 45.0% | |
| CAAAGCTGCATTTCCACCTA+TGG | - | chr6_3:92443767-92443786 | Msa0965160:five_prime_UTR | 45.0% | |
| !! | AACTGCAGGTGTTGAAGTTG+CGG | + | chr6_3:92443793-92443812 | None:intergenic | 45.0% |
| !! | AACTGCAGGTGTTGAAGTTG+TGG | + | chr6_3:92443793-92443812 | None:intergenic | 45.0% |
| !! | AACTGCAGGTGTTGAAGTTG+TGG | + | chr6_3:92443793-92443812 | None:intergenic | 45.0% |
| ACAGTATCAATAGGGACCAC+AGG | + | chr6_3:92443906-92443925 | None:intergenic | 45.0% | |
| TGGAGAATCCAAGCTGAAGA+TGG | - | chr6_3:92443935-92443954 | Msa0965160:five_prime_UTR | 45.0% | |
| !!! | AAATTTATTTGTTTTTAATA+GGG | + | chr6_3:92439987-92440006 | None:intergenic | 5.0% |
| !!! | AAAATTTATTTGTTTTTAAT+AGG | + | chr6_3:92439988-92440007 | None:intergenic | 5.0% |
| !! | GTAAAATTAAATTAAAAATA+AGG | + | chr6_3:92442882-92442901 | None:intergenic | 5.0% |
| !!! | TTTTAATTTAATTTTACATT+TGG | - | chr6_3:92442885-92442904 | Msa0965160:intron | 5.0% |
| GAGGGAAGAATCGTAATCGG+TGG | - | chr6_3:92438031-92438050 | Msa0965160:CDS | 50.0% | |
| GGAAGAATCGTAATCGGTGG+TGG | - | chr6_3:92438034-92438053 | Msa0965160:CDS | 50.0% | |
| ! | TTAATGGCGGAAGGTGAAGG+AGG | - | chr6_3:92438119-92438138 | Msa0965160:intron | 50.0% |
| TGTTGAACCACCTGCTGTTG+CGG | + | chr6_3:92438314-92438333 | None:intergenic | 50.0% | |
| CAACAGCAGGTGGTTCAACA+GGG | - | chr6_3:92438314-92438333 | Msa0965160:intron | 50.0% | |
| AACAGCAGGTGGTTCAACAG+GGG | - | chr6_3:92438315-92438334 | Msa0965160:intron | 50.0% | |
| CAACACTCTTCTGTGAGGGT+TGG | - | chr6_3:92438416-92438435 | Msa0965160:intron | 50.0% | |
| AAGTAGGCACTTCCCAGTCA+TGG | - | chr6_3:92439193-92439212 | Msa0965160:CDS | 50.0% | |
| ! | CTGTTTGCAATCGCGGATTG+TGG | - | chr6_3:92439225-92439244 | Msa0965160:CDS | 50.0% |
| GTGTCAAACAGCGGCTATAG+TGG | + | chr6_3:92439297-92439316 | None:intergenic | 50.0% | |
| ACTGGCGCATGTTCTCACAT+TGG | - | chr6_3:92439750-92439769 | Msa0965160:intron | 50.0% | |
| CATCTAACTGGACCCACAGT+GGG | - | chr6_3:92439899-92439918 | Msa0965160:CDS | 50.0% | |
| CGGGAAATTCATACCCACTG+TGG | + | chr6_3:92439915-92439934 | None:intergenic | 50.0% | |
| GGTTTCCCATGGCCAAAGTT+AGG | - | chr6_3:92440095-92440114 | Msa0965160:intron | 50.0% | |
| CAATGAAGCTGCTAGACGAG+AGG | - | chr6_3:92440348-92440367 | Msa0965160:intron | 50.0% | |
| ! | TGAGGGCTGCTCGCAATTTT+GGG | + | chr6_3:92440415-92440434 | None:intergenic | 50.0% |
| AAAATTGCGAGCAGCCCTCA+GGG | - | chr6_3:92440415-92440434 | Msa0965160:CDS | 50.0% | |
| TGAGGGAAGTGAAGAGAGAC+AGG | - | chr6_3:92441174-92441193 | Msa0965160:intron | 50.0% | |
| !! | GAGAGACAGGCTTTGTTTCG+TGG | - | chr6_3:92441187-92441206 | Msa0965160:intron | 50.0% |
| GCTGCCATAACTGGAGCTAT+TGG | - | chr6_3:92441250-92441269 | Msa0965160:intron | 50.0% | |
| TGGAGGTGATGAAAAGCCGT+AGG | + | chr6_3:92441278-92441297 | None:intergenic | 50.0% | |
| CTTCTTATGGCCTACAGCCA+AGG | - | chr6_3:92441327-92441346 | Msa0965160:CDS | 50.0% | |
| !! | TGTCCCGGCTTGCTAATTGA+TGG | + | chr6_3:92441355-92441374 | None:intergenic | 50.0% |
| AATTAGCAAGCCGGGACAAC+AGG | - | chr6_3:92441357-92441376 | Msa0965160:CDS | 50.0% | |
| ACAGGTGAAGCTGATGAGGA+GGG | + | chr6_3:92441827-92441846 | None:intergenic | 50.0% | |
| TGAGACAGGTGAAGCTGATG+AGG | + | chr6_3:92441831-92441850 | None:intergenic | 50.0% | |
| ! | CAGGAGACATCGGTCTTTTC+GGG | + | chr6_3:92442637-92442656 | None:intergenic | 50.0% |
| ! | CCAGGAGACATCGGTCTTTT+CGG | + | chr6_3:92442638-92442657 | None:intergenic | 50.0% |
| CGAAAAGACCGATGTCTCCT+GGG | - | chr6_3:92442636-92442655 | Msa0965160:intron | 50.0% | |
| GCTAAAGTCCCAGGAGACAT+CGG | + | chr6_3:92442647-92442666 | None:intergenic | 50.0% | |
| CACATCAAGGCTAAAGTCCC+AGG | + | chr6_3:92442656-92442675 | None:intergenic | 50.0% | |
| GCGAAGATGTATTGCAGGCA+TGG | + | chr6_3:92442733-92442752 | None:intergenic | 50.0% | |
| ! | TCGCAATTTCCTGACGGACA+AGG | - | chr6_3:92442749-92442768 | Msa0965160:intron | 50.0% |
| TATCCTGCTTTCAGGCAGCA+AGG | - | chr6_3:92443386-92443405 | Msa0965160:CDS | 50.0% | |
| ATCCTGCTTTCAGGCAGCAA+GGG | - | chr6_3:92443387-92443406 | Msa0965160:CDS | 50.0% | |
| AACACCTGCAGTTCCACCTA+TGG | - | chr6_3:92443800-92443819 | Msa0965160:five_prime_UTR | 50.0% | |
| GTTGAAGTTGTGGCCATAGG+TGG | + | chr6_3:92443816-92443835 | None:intergenic | 50.0% | |
| ! | GGTGTTGAAGTTGTGGCCAT+AGG | + | chr6_3:92443819-92443838 | None:intergenic | 50.0% |
| GTGGCAATATGTGGAACTGC+AGG | + | chr6_3:92443840-92443859 | None:intergenic | 50.0% | |
| AACACCTGCAGTTCCACCTA+TGG | - | chr6_3:92443800-92443819 | Msa0965160:five_prime_UTR | 50.0% | |
| !! | GACCACAGGTGTTGAAGTTG+CGG | + | chr6_3:92443892-92443911 | None:intergenic | 50.0% |
| TACCGTCGAAGAAGCTAGCG+AGG | - | chr6_3:92438249-92438268 | Msa0965160:intron | 55.0% | |
| ! | TGCCTCGCTAGCTTCTTCGA+CGG | + | chr6_3:92438254-92438273 | None:intergenic | 55.0% |
| GCAACAGCAGGTGGTTCAAC+AGG | - | chr6_3:92438313-92438332 | Msa0965160:intron | 55.0% | |
| !! | GGTTCAACAGGGGAGTGTCA+CGG | - | chr6_3:92438325-92438344 | Msa0965160:intron | 55.0% |
| GAGTGTCACGGTGCAGAAAC+CGG | - | chr6_3:92438337-92438356 | Msa0965160:intron | 55.0% | |
| GTGCAGAAACCGGTTGGAGT+GGG | - | chr6_3:92438347-92438366 | Msa0965160:intron | 55.0% | |
| ! | AGTGGGTGGTTTGCCGATAC+CGG | - | chr6_3:92438364-92438383 | Msa0965160:intron | 55.0% |
| ! | TGGTTTGCCGATACCGGTAC+CGG | - | chr6_3:92438370-92438389 | Msa0965160:intron | 55.0% |
| ! | TGAATTGTCTGCACCGGCGT+TGG | + | chr6_3:92438398-92438417 | None:intergenic | 55.0% |
| GCATCTAACTGGACCCACAG+TGG | - | chr6_3:92439898-92439917 | Msa0965160:CDS | 55.0% | |
| ! | CTGAGGGCTGCTCGCAATTT+TGG | + | chr6_3:92440416-92440435 | None:intergenic | 55.0% |
| CAAAATTGCGAGCAGCCCTC+AGG | - | chr6_3:92440414-92440433 | Msa0965160:CDS | 55.0% | |
| CACGCGATAGCAGGGTAAGT+AGG | - | chr6_3:92440440-92440459 | Msa0965160:CDS | 55.0% | |
| GCGGCAAATGCTGCCATAAC+TGG | - | chr6_3:92441241-92441260 | Msa0965160:intron | 55.0% | |
| !! | AGGGTGCTGGACCTTTGACA+AGG | + | chr6_3:92441808-92441827 | None:intergenic | 55.0% |
| GACAGGTGAAGCTGATGAGG+AGG | + | chr6_3:92441828-92441847 | None:intergenic | 55.0% | |
| TCACCTGTCTCAAGTGCTCG+TGG | - | chr6_3:92441839-92441858 | Msa0965160:intron | 55.0% | |
| GTTCCACGAGCACTTGAGAC+AGG | + | chr6_3:92441845-92441864 | None:intergenic | 55.0% | |
| CTGCAAGCGTCTTTGCAGCT+TGG | + | chr6_3:92442054-92442073 | None:intergenic | 55.0% | |
| CAAGCTGCAAAGACGCTTGC+AGG | - | chr6_3:92442052-92442071 | Msa0965160:intron | 55.0% | |
| CCGAAAAGACCGATGTCTCC+TGG | - | chr6_3:92442635-92442654 | Msa0965160:intron | 55.0% | |
| ATGACAGCTGCCTCTCCCAT+CGG | - | chr6_3:92442698-92442717 | Msa0965160:intron | 55.0% | |
| TCTGTCACTCCTTGTCCGTC+AGG | + | chr6_3:92442761-92442780 | None:intergenic | 55.0% | |
| ! | TGACGGACAAGGAGTGACAG+AGG | - | chr6_3:92442760-92442779 | Msa0965160:intron | 55.0% |
| TTCCCTTGCTGCCTGAAAGC+AGG | + | chr6_3:92443392-92443411 | None:intergenic | 55.0% | |
| CAGGCAGCAAGGGAAATTGG+TGG | - | chr6_3:92443397-92443416 | Msa0965160:CDS | 55.0% | |
| CAGCAGGAAGCCACTAGCAA+TGG | - | chr6_3:92443738-92443757 | Msa0965160:five_prime_UTR | 55.0% | |
| GTTGAAGTTGCGGCCATAGG+TGG | + | chr6_3:92443783-92443802 | None:intergenic | 55.0% | |
| ! | GGTGTTGAAGTTGCGGCCAT+AGG | + | chr6_3:92443786-92443805 | None:intergenic | 55.0% |
| GTTGAAGTTGCGGCCATAGG+TGG | + | chr6_3:92443783-92443802 | None:intergenic | 55.0% | |
| ! | GGTGTTGAAGTTGCGGCCAT+AGG | + | chr6_3:92443786-92443805 | None:intergenic | 55.0% |
| GGCTGCAAATGCGACTGCGA+CGG | - | chr6_3:92438214-92438233 | Msa0965160:intron | 60.0% | |
| GCAGTCGAAACCGCAACAGC+AGG | - | chr6_3:92438301-92438320 | Msa0965160:intron | 60.0% | |
| GTCGAAACCGCAACAGCAGG+TGG | - | chr6_3:92438304-92438323 | Msa0965160:intron | 60.0% | |
| GTCACGGTGCAGAAACCGGT+TGG | - | chr6_3:92438341-92438360 | Msa0965160:intron | 60.0% | |
| GGTGCAGAAACCGGTTGGAG+TGG | - | chr6_3:92438346-92438365 | Msa0965160:intron | 60.0% | |
| CAGAAACCGGTTGGAGTGGG+TGG | - | chr6_3:92438350-92438369 | Msa0965160:intron | 60.0% | |
| GGCAAACCACCCACTCCAAC+CGG | + | chr6_3:92438359-92438378 | None:intergenic | 60.0% | |
| !! | GTTGGCACCGGTACCGGTAT+CGG | + | chr6_3:92438380-92438399 | None:intergenic | 60.0% |
| TCCTGTCATGGCAAGGTCGG+CGG | + | chr6_3:92439942-92439961 | None:intergenic | 60.0% | |
| TGCTATCGCGTGCTCCCTGA+GGG | + | chr6_3:92440432-92440451 | None:intergenic | 60.0% | |
| ! | TCAGGGAGCACGCGATAGCA+GGG | - | chr6_3:92440432-92440451 | Msa0965160:CDS | 60.0% |
| ATGTAGGAGGAGGCTGGGGA+AGG | - | chr6_3:92441022-92441041 | Msa0965160:intron | 60.0% | |
| ! | GAAGCTGATGAGGAGGGTGC+TGG | + | chr6_3:92441821-92441840 | None:intergenic | 60.0% |
| TGACAGCTGCCTCTCCCATC+GGG | - | chr6_3:92442699-92442718 | Msa0965160:intron | 60.0% | |
| GCATGGGTCGTTTGCCCGAT+GGG | + | chr6_3:92442716-92442735 | None:intergenic | 60.0% | |
| GTGGCCATAGGTGGAACTGC+AGG | + | chr6_3:92443807-92443826 | None:intergenic | 60.0% | |
| GGCCGCAACTTCAACACCTG+TGG | - | chr6_3:92443788-92443807 | Msa0965160:five_prime_UTR | 60.0% | |
| GGTTACGGCTGCGGCTGCAA+CGG | - | chr6_3:92438184-92438203 | Msa0965160:intron | 65.0% | |
| CAAATGCGACTGCGACGGCG+TGG | - | chr6_3:92438219-92438238 | Msa0965160:intron | 65.0% | |
| GTCATGGCAAGGTCGGCGGA+CGG | + | chr6_3:92439938-92439957 | None:intergenic | 65.0% | |
| TCCGCCGACCTTGCCATGAC+AGG | - | chr6_3:92439938-92439957 | Msa0965160:intron | 65.0% | |
| CTGCTATCGCGTGCTCCCTG+AGG | + | chr6_3:92440433-92440452 | None:intergenic | 65.0% | |
| ! | CTCAGGGAGCACGCGATAGC+AGG | - | chr6_3:92440431-92440450 | Msa0965160:CDS | 65.0% |
| GGTCGTTTGCCCGATGGGAG+AGG | + | chr6_3:92442711-92442730 | None:intergenic | 65.0% | |
| GGCATGGGTCGTTTGCCCGA+TGG | + | chr6_3:92442717-92442736 | None:intergenic | 65.0% | |
| GCGGCCATAGGTGGAACTGC+AGG | + | chr6_3:92443873-92443892 | None:intergenic | 65.0% | |
| TACGGCTGCGGCTGCAACGG+CGG | - | chr6_3:92438187-92438206 | Msa0965160:intron | 70.0% | |
| TGCGACTGCGACGGCGTGGT+TGG | - | chr6_3:92438223-92438242 | Msa0965160:intron | 70.0% | |
| !! | ACCGGTACCGGTGCCAACGC+CGG | - | chr6_3:92438382-92438401 | Msa0965160:intron | 70.0% |
| !! | ACCGGCGTTGGCACCGGTAC+CGG | + | chr6_3:92438386-92438405 | None:intergenic | 70.0% |
| !! | GTCTGCACCGGCGTTGGCAC+CGG | + | chr6_3:92438392-92438411 | None:intergenic | 70.0% |
| ATGGCAAGGTCGGCGGACGG+CGG | + | chr6_3:92439935-92439954 | None:intergenic | 70.0% | |
| TGCGGCTGCAACGGCGGCTG+CGG | - | chr6_3:92438193-92438212 | Msa0965160:intron | 75.0% | |
| TGGCAAGGTCGGCGGACGGC+GGG | + | chr6_3:92439934-92439953 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 92437760 | 92443971 | 92437760 | ID=Msa0965160;Name=Msa0965160 |
| chr6_3 | mRNA | 92437760 | 92443971 | 92437760 | ID=Msa0965160-mRNA-1;Parent=Msa0965160;Name=Msa0965160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=362|1|0.87|1|1|1|8|0|633 |
| chr6_3 | exon | 92437760 | 92438088 | 92437760 | ID=Msa0965160-mRNA-1:exon:16806;Parent=Msa0965160-mRNA-1 |
| chr6_3 | exon | 92438868 | 92439284 | 92438868 | ID=Msa0965160-mRNA-1:exon:16805;Parent=Msa0965160-mRNA-1 |
| chr6_3 | exon | 92439658 | 92439752 | 92439658 | ID=Msa0965160-mRNA-1:exon:16804;Parent=Msa0965160-mRNA-1 |
| chr6_3 | exon | 92439825 | 92439931 | 92439825 | ID=Msa0965160-mRNA-1:exon:16803;Parent=Msa0965160-mRNA-1 |
| chr6_3 | exon | 92440353 | 92440703 | 92440353 | ID=Msa0965160-mRNA-1:exon:16802;Parent=Msa0965160-mRNA-1 |
| chr6_3 | exon | 92441278 | 92441455 | 92441278 | ID=Msa0965160-mRNA-1:exon:16801;Parent=Msa0965160-mRNA-1 |
| chr6_3 | exon | 92442093 | 92442200 | 92442093 | ID=Msa0965160-mRNA-1:exon:16800;Parent=Msa0965160-mRNA-1 |
| chr6_3 | exon | 92443293 | 92443971 | 92443293 | ID=Msa0965160-mRNA-1:exon:16799;Parent=Msa0965160-mRNA-1 |
| chr6_3 | five_prime_UTR | 92443610 | 92443971 | 92443610 | ID=Msa0965160-mRNA-1:five_prime_utr;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92443293 | 92443609 | 92443293 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92442093 | 92442200 | 92442093 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92441278 | 92441455 | 92441278 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92440353 | 92440703 | 92440353 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92439825 | 92439931 | 92439825 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92439658 | 92439752 | 92439658 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92438868 | 92439284 | 92438868 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| chr6_3 | CDS | 92437760 | 92438088 | 92437760 | ID=Msa0965160-mRNA-1:cds;Parent=Msa0965160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
