Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394400 | XP_003620600.2 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394400 | sp|Q9SZD1|TCX5_ARATH | 56.144 | 529 | 183 | 15 | 43 | 537 | 21 | 534 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394400 | A0A0C3VZM0 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1208 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1394400 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0965160 | Msa1394400 | 0.952172 | 4.288494e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394400 | MtrunA17_Chr6g0485811 | 94.127 | 630 | 13 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1208 |
| Msa1394400 | MtrunA17_Chr8g0390351 | 65.789 | 646 | 155 | 12 | 1 | 631 | 1 | 595 | 0.0 | 791 |
| Msa1394400 | MtrunA17_Chr3g0139951 | 48.000 | 350 | 157 | 11 | 51 | 385 | 61 | 400 | 1.37e-85 | 273 |
| Msa1394400 | MtrunA17_Chr5g0394661 | 42.073 | 164 | 92 | 2 | 96 | 258 | 456 | 617 | 1.37e-30 | 127 |
| Msa1394400 | MtrunA17_Chr1g0149101 | 47.727 | 132 | 60 | 3 | 130 | 255 | 498 | 626 | 4.54e-29 | 123 |
| Msa1394400 | MtrunA17_Chr1g0205031 | 38.211 | 123 | 67 | 3 | 141 | 258 | 416 | 534 | 1.65e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394400 | AT4G29000.1 | 56.144 | 529 | 183 | 15 | 43 | 537 | 21 | 534 | 0.0 | 532 |
| Msa1394400 | AT2G20110.3 | 49.909 | 549 | 216 | 16 | 45 | 579 | 21 | 524 | 5.48e-166 | 486 |
| Msa1394400 | AT2G20110.1 | 49.909 | 549 | 216 | 16 | 45 | 579 | 21 | 524 | 9.74e-166 | 486 |
| Msa1394400 | AT2G20110.2 | 49.281 | 556 | 216 | 17 | 45 | 579 | 21 | 531 | 7.40e-163 | 479 |
| Msa1394400 | AT5G25790.1 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 1.16e-103 | 322 |
| Msa1394400 | AT5G25790.2 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 2.78e-103 | 323 |
| Msa1394400 | AT5G25790.3 | 41.928 | 446 | 196 | 13 | 90 | 524 | 51 | 444 | 6.04e-101 | 315 |
| Msa1394400 | AT3G16160.1 | 30.935 | 417 | 180 | 13 | 113 | 518 | 43 | 362 | 3.17e-42 | 157 |
| Msa1394400 | AT3G22760.2 | 42.289 | 201 | 83 | 7 | 93 | 266 | 147 | 341 | 8.45e-36 | 141 |
| Msa1394400 | AT3G22760.1 | 42.289 | 201 | 83 | 7 | 93 | 266 | 270 | 464 | 1.42e-35 | 142 |
| Msa1394400 | AT3G22780.1 | 34.016 | 244 | 135 | 6 | 52 | 274 | 312 | 550 | 1.79e-33 | 137 |
| Msa1394400 | AT4G14770.1 | 35.556 | 225 | 120 | 6 | 52 | 259 | 289 | 505 | 2.15e-33 | 136 |
| Msa1394400 | AT4G14770.3 | 35.556 | 225 | 120 | 6 | 52 | 259 | 270 | 486 | 2.34e-33 | 136 |
| Msa1394400 | AT4G14770.2 | 35.556 | 225 | 120 | 6 | 52 | 259 | 269 | 485 | 2.72e-33 | 135 |
| Msa1394400 | AT3G04850.1 | 46.512 | 129 | 68 | 1 | 130 | 257 | 453 | 581 | 2.50e-30 | 127 |
Find 175 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGGCTGCTCGCAATTT+TGG | 0.046264 | tig0021787:+13363 | None:intergenic |
| TTCTCTTACATCACCAATTT+TGG | 0.102587 | tig0021787:-15910 | Msa1394400:five_prime_UTR |
| TTGCACTGCCTTTGCTTCTT+TGG | 0.171967 | tig0021787:+14187 | None:intergenic |
| TCCGGATGAACAACATTCTT+TGG | 0.229319 | tig0021787:+15624 | None:intergenic |
| GATCCAATCAACAATGAAAT+TGG | 0.238430 | tig0021787:-10085 | Msa1394400:CDS |
| AAAATTGTTGGATCCAAAAT+TGG | 0.252570 | tig0021787:+15897 | None:intergenic |
| ATTGATACTGTAGCTGAAAA+TGG | 0.265617 | tig0021787:-9860 | Msa1394400:CDS |
| GCGGCAAATGCTGCCATAAC+TGG | 0.288463 | tig0021787:-12534 | Msa1394400:CDS |
| CAAGCTGCAAAGACGCTTGC+AGG | 0.309609 | tig0021787:-11723 | Msa1394400:intron |
| CCTTCTTTCACTTCAAAGTT+AGG | 0.315523 | tig0021787:+14214 | None:intergenic |
| GAATTTGAAATTGTGAGTTT+TGG | 0.323848 | tig0021787:-15701 | Msa1394400:five_prime_UTR |
| TAAGGAGCTTTGTTCAGTTC+TGG | 0.332795 | tig0021787:-11760 | Msa1394400:CDS |
| TCAGTTCTGGTACTAGTATC+TGG | 0.333159 | tig0021787:-11747 | Msa1394400:CDS |
| TCTCAATAGAGTTATTACTA+TGG | 0.333741 | tig0021787:-10946 | Msa1394400:CDS |
| GCAACAGCAGGTGGTTCAAC+AGG | 0.346703 | tig0021787:-15463 | Msa1394400:CDS |
| TTAGGTCTTGATCTTGGTTT+GGG | 0.348976 | tig0021787:+14232 | None:intergenic |
| AGAGAGAGAAAGTGAGAGAA+AGG | 0.353781 | tig0021787:+15964 | None:intergenic |
| TTTCCAATTTCATTGTTGAT+TGG | 0.359965 | tig0021787:+10082 | None:intergenic |
| AAGTGAATTAGAGAATAAAA+AGG | 0.370167 | tig0021787:-10107 | Msa1394400:CDS |
| GTTAGGTCTTGATCTTGGTT+TGG | 0.377110 | tig0021787:+14231 | None:intergenic |
| AACACTCTTCTGTGAGGGTT+GGG | 0.378551 | tig0021787:-15359 | Msa1394400:intron |
| TCCGGAATTTGTTACGGTTA+CGG | 0.381935 | tig0021787:-15607 | Msa1394400:CDS |
| AGAGACAAAGTGTTCTTCAT+TGG | 0.385382 | tig0021787:-10134 | Msa1394400:CDS |
| ATTACTATGGGAGAGATAAA+TGG | 0.386685 | tig0021787:-10933 | Msa1394400:intron |
| TGCGGCTGCAACGGCGGCTG+CGG | 0.391234 | tig0021787:-15583 | Msa1394400:CDS |
| GCTGCCATAACTGGAGCTAT+TGG | 0.394392 | tig0021787:-12525 | Msa1394400:CDS |
| GCCGTAACCGTAACAAATTC+CGG | 0.395159 | tig0021787:+15606 | None:intergenic |
| CTCAGGGAGCACGCGATAGC+AGG | 0.397812 | tig0021787:-13345 | Msa1394400:CDS |
| CAAAATTGCGAGCAGCCCTC+AGG | 0.414226 | tig0021787:-13362 | Msa1394400:CDS |
| GTGGAATTTGAACAATTTGA+AGG | 0.421018 | tig0021787:-15723 | Msa1394400:five_prime_UTR |
| CCGAAAAGACCGATGTCTCC+TGG | 0.421935 | tig0021787:-11140 | Msa1394400:CDS |
| AAATTGCGAAGATGTATTGC+AGG | 0.422987 | tig0021787:+11040 | None:intergenic |
| AGCATTCACAGTACTTCTTA+AGG | 0.425540 | tig0021787:+12679 | None:intergenic |
| TCAAAGTTAGGTCTTGATCT+TGG | 0.425628 | tig0021787:+14226 | None:intergenic |
| CTCAATAGAGTTATTACTAT+GGG | 0.427779 | tig0021787:-10945 | Msa1394400:CDS |
| ATCAAAGAAAAGAAAAGGTC+AGG | 0.431936 | tig0021787:-12475 | Msa1394400:CDS |
| CTGCAAGCGTCTTTGCAGCT+TGG | 0.434786 | tig0021787:+11724 | None:intergenic |
| TGTCCCGGCTTGCTAATTGA+TGG | 0.441456 | tig0021787:+12423 | None:intergenic |
| CGTGGAACAAATCCAACATT+AGG | 0.442565 | tig0021787:-11918 | Msa1394400:CDS |
| TCCAAAGAATGTTGTTCATC+CGG | 0.443750 | tig0021787:-15625 | Msa1394400:CDS |
| GTCCATCAAAATTAAAGTAC+AGG | 0.444356 | tig0021787:-11890 | Msa1394400:intron |
| GAGAGAGAAAGTGAGAGAAA+GGG | 0.448529 | tig0021787:+15965 | None:intergenic |
| AATTAGCAAGCCGGGACAAC+AGG | 0.448943 | tig0021787:-12418 | Msa1394400:intron |
| GAGTGTCACGGTGCAGAAAC+CGG | 0.453981 | tig0021787:-15439 | Msa1394400:CDS |
| ATTTGTTACGGTTACGGCTG+CGG | 0.454985 | tig0021787:-15601 | Msa1394400:CDS |
| GTCTGCACCGGCGTTGGCAC+CGG | 0.455906 | tig0021787:+15387 | None:intergenic |
| TCTGTCACTCCTTGTCCGTC+AGG | 0.456188 | tig0021787:+11017 | None:intergenic |
| GCATGGGTCGTTTGCCCGAT+GGG | 0.456405 | tig0021787:+11062 | None:intergenic |
| GGCAAACCACCCACTCCAAC+CGG | 0.458936 | tig0021787:+15420 | None:intergenic |
| TGAGGGAAGTGAAGAGAGAC+AGG | 0.459062 | tig0021787:-12601 | Msa1394400:CDS |
| CTTGCTAATTGATGGATCCT+TGG | 0.460693 | tig0021787:+12431 | None:intergenic |
| GAGAGACAGGCTTTGTTTCG+TGG | 0.462723 | tig0021787:-12588 | Msa1394400:CDS |
| GAGAAAGGGTTTGAAGAAGA+AGG | 0.463633 | tig0021787:+15979 | None:intergenic |
| TGACAGCTGCCTCTCCCATC+GGG | 0.464632 | tig0021787:-11076 | Msa1394400:CDS |
| GAACTGAACAAAGCTCCTTA+AGG | 0.466976 | tig0021787:+11763 | None:intergenic |
| CAAAGCTGCATTTCCACCTA+TGG | 0.469835 | tig0021787:-10008 | Msa1394400:CDS |
| TTTCAGCTACAGTATCAATA+GGG | 0.473556 | tig0021787:+9864 | None:intergenic |
| CATGGACTGCAAGAACTTTG+AGG | 0.474484 | tig0021787:-12619 | Msa1394400:CDS |
| GTTGGCACCGGTACCGGTAT+CGG | 0.477193 | tig0021787:+15399 | None:intergenic |
| CAACACTCTTCTGTGAGGGT+TGG | 0.479410 | tig0021787:-15360 | Msa1394400:CDS |
| TACGGCTGCGGCTGCAACGG+CGG | 0.479468 | tig0021787:-15589 | Msa1394400:CDS |
| ACCGGCGTTGGCACCGGTAC+CGG | 0.479675 | tig0021787:+15393 | None:intergenic |
| AACACCTGCAGTTCCACCTA+TGG | 0.480803 | tig0021787:-9909 | Msa1394400:CDS |
| CAATAAATGTAGGAGGAGGC+TGG | 0.481773 | tig0021787:-12759 | Msa1394400:intron |
| AGCGTAATCCAAATGCATTT+AGG | 0.482400 | tig0021787:-13387 | Msa1394400:CDS |
| AACACCTGCAGTTCCACCTA+TGG | 0.482822 | tig0021787:-9975 | Msa1394400:CDS |
| TGTACAGCCACATCACCTTA+AGG | 0.485350 | tig0021787:-11778 | Msa1394400:CDS |
| ATGACAGCTGCCTCTCCCAT+CGG | 0.486923 | tig0021787:-11077 | Msa1394400:CDS |
| TGTTCATCCGGAATTTGTTA+CGG | 0.488179 | tig0021787:-15613 | Msa1394400:CDS |
| CCATCTGAACATGAATTACC+AGG | 0.490481 | tig0021787:+11173 | None:intergenic |
| ATCTTGTTCGTCACACATCA+AGG | 0.491361 | tig0021787:+11109 | None:intergenic |
| AGTGGGTGGTTTGCCGATAC+CGG | 0.492641 | tig0021787:-15412 | Msa1394400:CDS |
| CAGAACAAAGAACGTTGGCT+TGG | 0.493572 | tig0021787:+12655 | None:intergenic |
| TACTGAGATAGTACATCAGC+AGG | 0.501027 | tig0021787:-10053 | Msa1394400:CDS |
| AAGGTCAGGAACTCTTCTTA+TGG | 0.502814 | tig0021787:-12461 | Msa1394400:CDS |
| TGGAGAATCCAAGCTGAAGA+TGG | 0.503658 | tig0021787:-9840 | Msa1394400:CDS |
| GGTCGTTTGCCCGATGGGAG+AGG | 0.505246 | tig0021787:+11067 | None:intergenic |
| ATGGACTGCAAGAACTTTGA+GGG | 0.505326 | tig0021787:-12618 | Msa1394400:CDS |
| ATGTAGGAGGAGGCTGGGGA+AGG | 0.505481 | tig0021787:-12753 | Msa1394400:intron |
| TGCGACTGCGACGGCGTGGT+TGG | 0.505644 | tig0021787:-15553 | Msa1394400:CDS |
| GGATGAACAACATTCTTTGG+AGG | 0.510272 | tig0021787:+15627 | None:intergenic |
| TTCTGAGAATTGTAGATGCA+TGG | 0.511900 | tig0021787:-12637 | Msa1394400:CDS |
| GGTTACGGCTGCGGCTGCAA+CGG | 0.511927 | tig0021787:-15592 | Msa1394400:CDS |
| GGTGTTGAAGTTGCGGCCAT+AGG | 0.512968 | tig0021787:+9893 | None:intergenic |
| TGGTTTGCCGATACCGGTAC+CGG | 0.513091 | tig0021787:-15406 | Msa1394400:CDS |
| GTTCCACGAGCACTTGAGAC+AGG | 0.513110 | tig0021787:+11933 | None:intergenic |
| CGAAAAGACCGATGTCTCCT+GGG | 0.513429 | tig0021787:-11139 | Msa1394400:CDS |
| CTGATGTACTATCTCAGTAC+TGG | 0.516199 | tig0021787:+10057 | None:intergenic |
| TGTTGAACCACCTGCTGTTG+CGG | 0.517452 | tig0021787:+15465 | None:intergenic |
| GAAGCTGATGAGGAGGGTGC+TGG | 0.517647 | tig0021787:+11957 | None:intergenic |
| GGAAGAATCGTAATCGGTGG+TGG | 0.518893 | tig0021787:-15742 | Msa1394400:five_prime_UTR |
| GATGGACTCTGACCTAATGT+TGG | 0.519331 | tig0021787:+11906 | None:intergenic |
| CACATCAAGGCTAAAGTCCC+AGG | 0.519918 | tig0021787:+11122 | None:intergenic |
| GCAGTCGAAACCGCAACAGC+AGG | 0.525250 | tig0021787:-15475 | Msa1394400:CDS |
| CCAGCATCAAAGAAAAGAAA+AGG | 0.526932 | tig0021787:-12480 | Msa1394400:CDS |
| TTTGAGGGAAGAATCGTAAT+CGG | 0.527607 | tig0021787:-15748 | Msa1394400:five_prime_UTR |
| ACTGGAGCTATTGGTTCCTA+CGG | 0.529339 | tig0021787:-12516 | Msa1394400:CDS |
| GCGAAGATGTATTGCAGGCA+TGG | 0.531295 | tig0021787:+11045 | None:intergenic |
| GGTGTTGAAGTTGTGGCCAT+AGG | 0.532141 | tig0021787:+9959 | None:intergenic |
| CAGAAACCGGTTGGAGTGGG+TGG | 0.532614 | tig0021787:-15426 | Msa1394400:CDS |
| AATAAATGTAGGAGGAGGCT+GGG | 0.532720 | tig0021787:-12758 | Msa1394400:intron |
| GGTGTTGAAGTTGCGGCCAT+AGG | 0.535923 | tig0021787:+9992 | None:intergenic |
| GGTGCAGAAACCGGTTGGAG+TGG | 0.539729 | tig0021787:-15430 | Msa1394400:CDS |
| GGAACCAATAGCTCCAGTTA+TGG | 0.541771 | tig0021787:+12521 | None:intergenic |
| AAAATTGCGAGCAGCCCTCA+GGG | 0.542064 | tig0021787:-13361 | Msa1394400:CDS |
| GCTCTTGAGTTGATGAAGCA+AGG | 0.542763 | tig0021787:+11279 | None:intergenic |
| GAGTGTTGAATTGTCTGCAC+CGG | 0.543822 | tig0021787:+15375 | None:intergenic |
| CTCTTGAGTTGATGAAGCAA+GGG | 0.545085 | tig0021787:+11280 | None:intergenic |
| CCTAACTTTGAAGTGAAAGA+AGG | 0.546661 | tig0021787:-14214 | Msa1394400:CDS |
| AAGGTACTCCAAAGAAGCAA+AGG | 0.548812 | tig0021787:-14195 | Msa1394400:CDS |
| GGATCCATCAATTAGCAAGC+CGG | 0.552604 | tig0021787:-12427 | Msa1394400:CDS |
| GATCCATCAATTAGCAAGCC+GGG | 0.555761 | tig0021787:-12426 | Msa1394400:CDS |
| CAACAGCAGGTGGTTCAACA+GGG | 0.557867 | tig0021787:-15462 | Msa1394400:CDS |
| GAGAGAGAGAAAGTGTGTGA+AGG | 0.559818 | tig0021787:+15936 | None:intergenic |
| GGCTGCAAATGCGACTGCGA+CGG | 0.559897 | tig0021787:-15562 | Msa1394400:CDS |
| ACCGGTACCGGTGCCAACGC+CGG | 0.561379 | tig0021787:-15394 | Msa1394400:CDS |
| TGAGACAGGTGAAGCTGATG+AGG | 0.562009 | tig0021787:+11947 | None:intergenic |
| CTTCTTATGGCCTACAGCCA+AGG | 0.564439 | tig0021787:-12448 | Msa1394400:CDS |
| GGTTTGAAGAAGAAGGAAGA+AGG | 0.565910 | tig0021787:+15986 | None:intergenic |
| CTGCTATCGCGTGCTCCCTG+AGG | 0.567725 | tig0021787:+13346 | None:intergenic |
| GTTGAAGTTGCGGCCATAGG+TGG | 0.568296 | tig0021787:+9896 | None:intergenic |
| GTTGAAGTTGCGGCCATAGG+TGG | 0.568296 | tig0021787:+9995 | None:intergenic |
| GACCACAGGTGTTGAAGTTG+CGG | 0.569006 | tig0021787:+9886 | None:intergenic |
| CGAAGATGTATTGCAGGCAT+GGG | 0.569090 | tig0021787:+11046 | None:intergenic |
| AAAAGAAGTTGACGTTGAGA+AGG | 0.569097 | tig0021787:-11243 | Msa1394400:CDS |
| TTTGACATCACCATTGCTAG+TGG | 0.569409 | tig0021787:+10027 | None:intergenic |
| GTGCAGAAACCGGTTGGAGT+GGG | 0.569804 | tig0021787:-15429 | Msa1394400:CDS |
| TCGCAATTTCCTGACGGACA+AGG | 0.572247 | tig0021787:-11026 | Msa1394400:CDS |
| AACTGCAGGTGTTGAAGTTG+TGG | 0.572999 | tig0021787:+9952 | None:intergenic |
| GTTGAAGTTGTGGCAATATG+TGG | 0.573718 | tig0021787:+9929 | None:intergenic |
| CAGCAGGAAGCCACTAGCAA+TGG | 0.574156 | tig0021787:-10037 | Msa1394400:CDS |
| GCGGCCATAGGTGGAACTGC+AGG | 0.576630 | tig0021787:+9905 | None:intergenic |
| TTAATGGCGGAAGGTGAAGG+AGG | 0.577062 | tig0021787:-15657 | Msa1394400:CDS |
| TCAGGGAGCACGCGATAGCA+GGG | 0.577678 | tig0021787:-13344 | Msa1394400:intron |
| TCACCTGTCTCAAGTGCTCG+TGG | 0.579407 | tig0021787:-11936 | Msa1394400:CDS |
| GCGTCGGGAATATATTGTGA+TGG | 0.580424 | tig0021787:-13484 | Msa1394400:CDS |
| CCTGGTAATTCATGTTCAGA+TGG | 0.580857 | tig0021787:-11173 | Msa1394400:CDS |
| AGTTGACGTTGAGAAGGCTA+TGG | 0.583343 | tig0021787:-11237 | Msa1394400:CDS |
| AATATTAATAAAACATCACA+AGG | 0.586663 | tig0021787:-12727 | Msa1394400:CDS |
| CAAACAGATAAAATCAGCCC+TGG | 0.591581 | tig0021787:-11191 | Msa1394400:CDS |
| TGAATTGTCTGCACCGGCGT+TGG | 0.592942 | tig0021787:+15381 | None:intergenic |
| GTCACGGTGCAGAAACCGGT+TGG | 0.593017 | tig0021787:-15435 | Msa1394400:CDS |
| AACTGCAGGTGTTGAAGTTG+TGG | 0.593897 | tig0021787:+9919 | None:intergenic |
| AATTCAACACTCTTCTGTGA+GGG | 0.594410 | tig0021787:-15364 | Msa1394400:CDS |
| AACTGCAGGTGTTGAAGTTG+CGG | 0.594681 | tig0021787:+9985 | None:intergenic |
| ATTGATGGATCCTTGGCTGT+AGG | 0.596299 | tig0021787:+12438 | None:intergenic |
| GTGGCCATAGGTGGAACTGC+AGG | 0.599317 | tig0021787:+9971 | None:intergenic |
| ATAAATGTAGGAGGAGGCTG+GGG | 0.600017 | tig0021787:-12757 | Msa1394400:intron |
| GTTGAAGTTGTGGCCATAGG+TGG | 0.604086 | tig0021787:+9962 | None:intergenic |
| CAAAGCTCCTTAAGGTGATG+TGG | 0.604962 | tig0021787:+11771 | None:intergenic |
| CAATGTGTATCTTCAGCAAG+CGG | 0.607593 | tig0021787:-12553 | Msa1394400:CDS |
| GTCGAAACCGCAACAGCAGG+TGG | 0.610823 | tig0021787:-15472 | Msa1394400:CDS |
| ACAGTATCAATAGGGACCAC+AGG | 0.611364 | tig0021787:+9872 | None:intergenic |
| GCTAAAGTCCCAGGAGACAT+CGG | 0.613977 | tig0021787:+11131 | None:intergenic |
| GTGGCAATATGTGGAACTGC+AGG | 0.618160 | tig0021787:+9938 | None:intergenic |
| TGTCAGGTGAACCTTGTCAA+AGG | 0.626849 | tig0021787:-11981 | Msa1394400:intron |
| TGCCTCGCTAGCTTCTTCGA+CGG | 0.628871 | tig0021787:+15525 | None:intergenic |
| ACATCTTCGCAATTTCCTGA+CGG | 0.629950 | tig0021787:-11032 | Msa1394400:CDS |
| ATTCTCAGAACAAAGAACGT+TGG | 0.631850 | tig0021787:+12650 | None:intergenic |
| TATTAATAAAACATCACAAG+GGG | 0.635016 | tig0021787:-12725 | Msa1394400:CDS |
| GACAGGTGAAGCTGATGAGG+AGG | 0.635684 | tig0021787:+11950 | None:intergenic |
| GGTTCAACAGGGGAGTGTCA+CGG | 0.636580 | tig0021787:-15451 | Msa1394400:CDS |
| AGGGTGCTGGACCTTTGACA+AGG | 0.645508 | tig0021787:+11970 | None:intergenic |
| TACCGTCGAAGAAGCTAGCG+AGG | 0.646483 | tig0021787:-15527 | Msa1394400:CDS |
| GGCCGCAACTTCAACACCTG+TGG | 0.647452 | tig0021787:-9888 | Msa1394400:CDS |
| AACAGCAGGTGGTTCAACAG+GGG | 0.653532 | tig0021787:-15461 | Msa1394400:CDS |
| CAAATGCGACTGCGACGGCG+TGG | 0.660370 | tig0021787:-15557 | Msa1394400:CDS |
| CAATTCAACACTCTTCTGTG+AGG | 0.662812 | tig0021787:-15365 | Msa1394400:CDS |
| CAATGAAGCTGCTAGACGAG+AGG | 0.668933 | tig0021787:-13428 | Msa1394400:CDS |
| TGGAGGTGATGAAAAGCCGT+AGG | 0.674319 | tig0021787:+12500 | None:intergenic |
| GAGGGAAGAATCGTAATCGG+TGG | 0.677249 | tig0021787:-15745 | Msa1394400:five_prime_UTR |
| ATATTAATAAAACATCACAA+GGG | 0.678177 | tig0021787:-12726 | Msa1394400:CDS |
| CATCTGAACATGAATTACCA+GGG | 0.687920 | tig0021787:+11174 | None:intergenic |
| TGACGGACAAGGAGTGACAG+AGG | 0.696697 | tig0021787:-11015 | Msa1394400:CDS |
| ACAGGTGAAGCTGATGAGGA+GGG | 0.698375 | tig0021787:+11951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTTATGTCTTTAA+AGG | - | tig0021787:14171-14190 | Msa1394400:CDS | 10.0% |
| !!! | AAAAAGTTTTTGAAAATTGT+TGG | + | tig0021787:9960-9979 | None:intergenic | 15.0% |
| !!! | TGAATTTTTTTAGAAATTTG+AGG | - | tig0021787:10078-10097 | Msa1394400:CDS | 15.0% |
| !!! | GAATTTTTTTAGAAATTTGA+GGG | - | tig0021787:10079-10098 | Msa1394400:CDS | 15.0% |
| !!! | TTTAATTGTATACACATTTT+AGG | - | tig0021787:11078-11097 | Msa1394400:CDS | 15.0% |
| !! | TAAAAAGGAAATATATTCTT+TGG | - | tig0021787:12206-12225 | Msa1394400:intron | 15.0% |
| !!! | TTTTATATGATAGAACATTA+TGG | - | tig0021787:12695-12714 | Msa1394400:CDS | 15.0% |
| !! | TCTTAAAAGTTATAGAAAAA+AGG | - | tig0021787:12965-12984 | Msa1394400:intron | 15.0% |
| !! | AATATTAATAAAACATCACA+AGG | - | tig0021787:13115-13134 | Msa1394400:intron | 15.0% |
| !! | ATATTAATAAAACATCACAA+GGG | - | tig0021787:13116-13135 | Msa1394400:intron | 15.0% |
| !!! | ACATAAAAATAATTGATGAT+TGG | + | tig0021787:14165-14184 | None:intergenic | 15.0% |
| !! | AATTATGATAAAGTTTCATA+CGG | + | tig0021787:14362-14381 | None:intergenic | 15.0% |
| !! | ATTAAATTAAAAATAAGGAG+AGG | + | tig0021787:14944-14963 | None:intergenic | 15.0% |
| !!! | TATATGTTTTTCAAAACTTA+GGG | + | tig0021787:15057-15076 | None:intergenic | 15.0% |
| !!! | TTATATGTTTTTCAAAACTT+AGG | + | tig0021787:15058-15077 | None:intergenic | 15.0% |
| !!! | TTACGAAGAATTTCAATTTT+TGG | + | tig0021787:9996-10015 | None:intergenic | 20.0% |
| !!! | AAATTGTTGTGTTGTTTTAA+TGG | - | tig0021787:10169-10188 | Msa1394400:intron | 20.0% |
| !! | TTGAATTTGAAGAAAATTTG+TGG | - | tig0021787:10543-10562 | Msa1394400:intron | 20.0% |
| !! | TTAGTTAGAATCAATTATAG+AGG | - | tig0021787:10890-10909 | Msa1394400:intron | 20.0% |
| !! | TTGTTTCCTGAAAAATTAAA+GGG | + | tig0021787:11584-11603 | None:intergenic | 20.0% |
| !! | TTTGTTTATATAGTATGCAT+AGG | - | tig0021787:12108-12127 | Msa1394400:intron | 20.0% |
| !! | TTAGCTGAATTATCATAAAA+AGG | - | tig0021787:12191-12210 | Msa1394400:intron | 20.0% |
| !! | TTGGAATCAAAATAACTTAT+AGG | + | tig0021787:12602-12621 | None:intergenic | 20.0% |
| !!! | ACTTTTAAGATCATATAAAG+AGG | + | tig0021787:12955-12974 | None:intergenic | 20.0% |
| !! | TATTAATAAAACATCACAAG+GGG | - | tig0021787:13117-13136 | Msa1394400:intron | 20.0% |
| !! | GTTTATTTAAACTTAGGTAT+TGG | - | tig0021787:13484-13503 | Msa1394400:CDS | 20.0% |
| !!! | GAAATTTTTTTTAATGTGTC+AGG | - | tig0021787:13845-13864 | Msa1394400:intron | 20.0% |
| !! | AAGAATATCAGAAAACATAA+CGG | + | tig0021787:14198-14217 | None:intergenic | 20.0% |
| !! | AAACAAAAATTGATGAGAAA+AGG | + | tig0021787:14482-14501 | None:intergenic | 20.0% |
| !!! | ATATGTTTTTCAAAACTTAG+GGG | + | tig0021787:15056-15075 | None:intergenic | 20.0% |
| !!! | ATTGAAAATTTTCATGCTTT+GGG | + | tig0021787:15117-15136 | None:intergenic | 20.0% |
| !!! | AATTGAAAATTTTCATGCTT+TGG | + | tig0021787:15118-15137 | None:intergenic | 20.0% |
| !!! | AGCAATTTTTAACAATATAG+TGG | + | tig0021787:15669-15688 | None:intergenic | 20.0% |
| !! | AAGTGAATTAGAGAATAAAA+AGG | - | tig0021787:15735-15754 | Msa1394400:five_prime_UTR | 20.0% |
| ! | AAAATTGTTGGATCCAAAAT+TGG | + | tig0021787:9948-9967 | None:intergenic | 25.0% |
| !!! | GAATTTGAAATTGTGAGTTT+TGG | - | tig0021787:10141-10160 | Msa1394400:intron | 25.0% |
| !!! | TGTGGTTTTGAATTTTTGAA+AGG | - | tig0021787:10561-10580 | Msa1394400:intron | 25.0% |
| !!! | GTGGTTTTGAATTTTTGAAA+GGG | - | tig0021787:10562-10581 | Msa1394400:intron | 25.0% |
| !!! | TTTTTGAAAGGGTTTTTGTT+TGG | - | tig0021787:10573-10592 | Msa1394400:intron | 25.0% |
| ! | ATTCGTTTAAAAATCGTGTT+TGG | - | tig0021787:10844-10863 | Msa1394400:intron | 25.0% |
| !!! | CAAAACTTTGGTTTCAATTT+TGG | + | tig0021787:10972-10991 | None:intergenic | 25.0% |
| ! | ACAACATACAATCAAAACTT+TGG | + | tig0021787:10984-11003 | None:intergenic | 25.0% |
| !!! | GTTTTAGTATTTGAGAATGT+AGG | - | tig0021787:11054-11073 | Msa1394400:CDS | 25.0% |
| !!! | TGTATACACATTTTAGGTAA+CGG | - | tig0021787:11084-11103 | Msa1394400:CDS | 25.0% |
| ! | ATGTTAGTGTTATGAAATAG+CGG | + | tig0021787:11449-11468 | None:intergenic | 25.0% |
| !!! | TAACTACCCTTTAATTTTTC+AGG | - | tig0021787:11575-11594 | Msa1394400:intron | 25.0% |
| ! | CTTGTTTCCTGAAAAATTAA+AGG | + | tig0021787:11585-11604 | None:intergenic | 25.0% |
| !! | TATATAGTAAAGCATCTAAC+TGG | - | tig0021787:11953-11972 | Msa1394400:CDS | 25.0% |
| ! | ACAATTGTGTATGATTAGAT+TGG | - | tig0021787:12562-12581 | Msa1394400:CDS | 25.0% |
| !! | AAAACACATTCAAGACTTTT+TGG | + | tig0021787:12621-12640 | None:intergenic | 25.0% |
| !!! | AGTCTTGAATGTGTTTTTAT+TGG | - | tig0021787:12624-12643 | Msa1394400:CDS | 25.0% |
| !!! | TGTTGTTGTTTAGAAACTTA+AGG | - | tig0021787:12767-12786 | Msa1394400:intron | 25.0% |
| !!! | GTTGTTGTTTAGAAACTTAA+GGG | - | tig0021787:12768-12787 | Msa1394400:intron | 25.0% |
| !!! | GTTTAATTTTCTGAATTGAC+TGG | - | tig0021787:12897-12916 | Msa1394400:intron | 25.0% |
| ! | AGTTATAGAAAAAAGGTTTC+TGG | - | tig0021787:12972-12991 | Msa1394400:intron | 25.0% |
| !!! | ATTTCAATTTTTTTGCTGAC+TGG | - | tig0021787:13052-13071 | Msa1394400:intron | 25.0% |
| !!! | GGTATTTTGACAATAAATGT+AGG | - | tig0021787:13073-13092 | Msa1394400:intron | 25.0% |
| !!! | ATTTTGACAATAAATGTAGG+AGG | - | tig0021787:13076-13095 | Msa1394400:intron | 25.0% |
| ! | TACAGGGTTTATTTAAACTT+AGG | - | tig0021787:13478-13497 | Msa1394400:CDS | 25.0% |
| !!! | AACTTAGGTATTGGTTAAAT+CGG | - | tig0021787:13493-13512 | Msa1394400:CDS | 25.0% |
| ! | ATCGGAGAAATATTAAACAA+CGG | - | tig0021787:13511-13530 | Msa1394400:intron | 25.0% |
| !!! | CTTTCTAGTTTTAAATCCTA+AGG | - | tig0021787:13665-13684 | Msa1394400:intron | 25.0% |
| !!! | TTAATTTGTCTCTATACCTT+AGG | + | tig0021787:13684-13703 | None:intergenic | 25.0% |
| !!! | TACCTGTACTTTAATTTTGA+TGG | + | tig0021787:13957-13976 | None:intergenic | 25.0% |
| ! | AATTAAAGTACAGGTAATGT+TGG | - | tig0021787:13961-13980 | Msa1394400:intron | 25.0% |
| ! | TGGTTATATGTATGAAATGA+AGG | - | tig0021787:13981-14000 | Msa1394400:intron | 25.0% |
| !!! | GCTTACTTGATTATTTTTGT+AGG | - | tig0021787:14024-14043 | Msa1394400:intron | 25.0% |
| ! | AGAATATCAGAAAACATAAC+GGG | + | tig0021787:14197-14216 | None:intergenic | 25.0% |
| ! | TCTCAATAGAGTTATTACTA+TGG | - | tig0021787:14896-14915 | Msa1394400:intron | 25.0% |
| ! | CTCAATAGAGTTATTACTAT+GGG | - | tig0021787:14897-14916 | Msa1394400:intron | 25.0% |
| !! | TCATATCGTCATTGTAATTT+TGG | - | tig0021787:14994-15013 | Msa1394400:intron | 25.0% |
| ! | TTGCCAAAATGAAAAATTGA+CGG | + | tig0021787:15028-15047 | None:intergenic | 25.0% |
| !!! | TATGTTTTTCAAAACTTAGG+GGG | + | tig0021787:15055-15074 | None:intergenic | 25.0% |
| !! | TTGAAAATTTTCATGCTTTG+GGG | + | tig0021787:15116-15135 | None:intergenic | 25.0% |
| ! | TGAGACTTTGTAATTATCAA+GGG | - | tig0021787:15226-15245 | Msa1394400:intron | 25.0% |
| ! | AAAAGTAACTTCTGACTAAA+AGG | + | tig0021787:15339-15358 | None:intergenic | 25.0% |
| ! | TTTCCAATTTCATTGTTGAT+TGG | + | tig0021787:15763-15782 | None:intergenic | 25.0% |
| ! | TTCTCTTACATCACCAATTT+TGG | - | tig0021787:9932-9951 | Msa1394400:CDS | 30.0% |
| GTGGAATTTGAACAATTTGA+AGG | - | tig0021787:10119-10138 | Msa1394400:CDS | 30.0% | |
| !!! | TTGTTGTGTTGTTTTAATGG+CGG | - | tig0021787:10172-10191 | Msa1394400:intron | 30.0% |
| !! | TGATTTTAATGCGATGTTGA+TGG | - | tig0021787:10343-10362 | Msa1394400:intron | 30.0% |
| TTACCTAAATTCACTAAGTG+CGG | + | tig0021787:11128-11147 | None:intergenic | 30.0% | |
| CACTTAGTGAATTTAGGTAA+CGG | - | tig0021787:11128-11147 | Msa1394400:CDS | 30.0% | |
| CACTCATATGTTAGAAGTTA+CGG | - | tig0021787:11227-11246 | Msa1394400:CDS | 30.0% | |
| TATACACTAGTACAGAATTG+TGG | + | tig0021787:11878-11897 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTATCTCTCCTT+TGG | - | tig0021787:12246-12265 | Msa1394400:intron | 30.0% |
| ! | ATATTGTGAATGTTTTGCGT+CGG | - | tig0021787:12342-12361 | Msa1394400:intron | 30.0% |
| !! | GTGTATGATTAGATTGGTTT+AGG | - | tig0021787:12568-12587 | Msa1394400:CDS | 30.0% |
| CTTATTCAACTAAGTGATGT+CGG | + | tig0021787:12740-12759 | None:intergenic | 30.0% | |
| TCATTTAAGTGTCTGATACA+CGG | + | tig0021787:13011-13030 | None:intergenic | 30.0% | |
| ATCAAAGAAAAGAAAAGGTC+AGG | - | tig0021787:13367-13386 | Msa1394400:CDS | 30.0% | |
| GTCCATCAAAATTAAAGTAC+AGG | - | tig0021787:13952-13971 | Msa1394400:intron | 30.0% | |
| !! | TCTTTTGTTGTATGAATGAC+TGG | - | tig0021787:14214-14233 | Msa1394400:CDS | 30.0% |
| TTATGAAAACAGGAAATGCA+TGG | + | tig0021787:14280-14299 | None:intergenic | 30.0% | |
| ! | CATTTCCTGTTTTCATAATC+AGG | - | tig0021787:14282-14301 | Msa1394400:intron | 30.0% |
| TGATTGTGTGTGCATTATAA+CGG | - | tig0021787:14320-14339 | Msa1394400:intron | 30.0% | |
| ! | TCATACGGTGAAGTTTTTAT+TGG | + | tig0021787:14347-14366 | None:intergenic | 30.0% |
| !! | ACAATCAATGGTTCTGAAAA+AGG | + | tig0021787:14455-14474 | None:intergenic | 30.0% |
| AGAAAAGGAAACACAATCAA+TGG | + | tig0021787:14467-14486 | None:intergenic | 30.0% | |
| ATTACTATGGGAGAGATAAA+TGG | - | tig0021787:14909-14928 | Msa1394400:intron | 30.0% | |
| ! | AGACCGTCAATTTTTCATTT+TGG | - | tig0021787:15022-15041 | Msa1394400:intron | 30.0% |
| AACACTTGTAGAGTAATCAT+TGG | + | tig0021787:15157-15176 | None:intergenic | 30.0% | |
| CTGAGACTTTGTAATTATCA+AGG | - | tig0021787:15225-15244 | Msa1394400:intron | 30.0% | |
| GAGACTTTGTAATTATCAAG+GGG | - | tig0021787:15227-15246 | Msa1394400:intron | 30.0% | |
| AGACTTTGTAATTATCAAGG+GGG | - | tig0021787:15228-15247 | Msa1394400:intron | 30.0% | |
| TTCAATAAGCTGAAAGTTGA+AGG | - | tig0021787:15263-15282 | Msa1394400:intron | 30.0% | |
| TCAATAAGCTGAAAGTTGAA+GGG | - | tig0021787:15264-15283 | Msa1394400:intron | 30.0% | |
| CAATGCCATTAGAAAGAATT+CGG | - | tig0021787:15413-15432 | Msa1394400:CDS | 30.0% | |
| GGCTAATGAGAAAATATGAA+GGG | + | tig0021787:15648-15667 | None:intergenic | 30.0% | |
| TGGCTAATGAGAAAATATGA+AGG | + | tig0021787:15649-15668 | None:intergenic | 30.0% | |
| !! | AACACTTTGTCTCTGAAATT+GGG | + | tig0021787:15702-15721 | None:intergenic | 30.0% |
| GATCCAATCAACAATGAAAT+TGG | - | tig0021787:15757-15776 | Msa1394400:five_prime_UTR | 30.0% | |
| TTTCAGCTACAGTATCAATA+GGG | + | tig0021787:15981-16000 | None:intergenic | 30.0% | |
| ! | TTTTCAGCTACAGTATCAAT+AGG | + | tig0021787:15982-16001 | None:intergenic | 30.0% |
| ATTGATACTGTAGCTGAAAA+TGG | - | tig0021787:15982-16001 | Msa1394400:five_prime_UTR | 30.0% | |
| TTTGAGGGAAGAATCGTAAT+CGG | - | tig0021787:10094-10113 | Msa1394400:CDS | 35.0% | |
| TCCAAAGAATGTTGTTCATC+CGG | - | tig0021787:10217-10236 | Msa1394400:intron | 35.0% | |
| !! | TGTTCATCCGGAATTTGTTA+CGG | - | tig0021787:10229-10248 | Msa1394400:intron | 35.0% |
| AATTCAACACTCTTCTGTGA+GGG | - | tig0021787:10478-10497 | Msa1394400:intron | 35.0% | |
| ! | AAAAGTGAGTTGAACTGAAG+TGG | - | tig0021787:10805-10824 | Msa1394400:intron | 35.0% |
| AGGCAAAAGCAATTCTACAT+GGG | - | tig0021787:10910-10929 | Msa1394400:intron | 35.0% | |
| ! | TGGTTTCAATTTTGGATGAG+AGG | + | tig0021787:10964-10983 | None:intergenic | 35.0% |
| TCTTCACGAGGATTATATGT+TGG | - | tig0021787:11016-11035 | Msa1394400:CDS | 35.0% | |
| !!! | TTTAGGTAACGGATTTTCAG+CGG | - | tig0021787:11095-11114 | Msa1394400:CDS | 35.0% |
| TAACCGCACTTAGTGAATTT+AGG | - | tig0021787:11122-11141 | Msa1394400:CDS | 35.0% | |
| CAGTGAATTATACCATGACT+GGG | + | tig0021787:11274-11293 | None:intergenic | 35.0% | |
| ACAGTGAATTATACCATGAC+TGG | + | tig0021787:11275-11294 | None:intergenic | 35.0% | |
| TAATTCACTGTTTGCAATCG+CGG | - | tig0021787:11284-11303 | Msa1394400:CDS | 35.0% | |
| ! | TTTGACAAGCAACTGTCTTT+TGG | - | tig0021787:11544-11563 | Msa1394400:intron | 35.0% |
| TTAGGTCTTGATCTTGGTTT+GGG | + | tig0021787:11613-11632 | None:intergenic | 35.0% | |
| TCAAAGTTAGGTCTTGATCT+TGG | + | tig0021787:11619-11638 | None:intergenic | 35.0% | |
| CCTTCTTTCACTTCAAAGTT+AGG | + | tig0021787:11631-11650 | None:intergenic | 35.0% | |
| !! | CCTAACTTTGAAGTGAAAGA+AGG | - | tig0021787:11628-11647 | Msa1394400:intron | 35.0% |
| CATTGAAAGAAACACACACA+CGG | + | tig0021787:11734-11753 | None:intergenic | 35.0% | |
| TTTGTACTTCAAAGGACAAC+AGG | + | tig0021787:11903-11922 | None:intergenic | 35.0% | |
| !! | CGTGTTGATTTGTACTTCAA+AGG | + | tig0021787:11911-11930 | None:intergenic | 35.0% |
| CAAACGATCAATCAGTTGAT+AGG | + | tig0021787:12081-12100 | None:intergenic | 35.0% | |
| ACTTCTACTGTGTATAGTCA+TGG | - | tig0021787:12139-12158 | Msa1394400:intron | 35.0% | |
| CTTCTACTGTGTATAGTCAT+GGG | - | tig0021787:12140-12159 | Msa1394400:intron | 35.0% | |
| GCTAAATTTGAGCCTAACTT+TGG | + | tig0021787:12176-12195 | None:intergenic | 35.0% | |
| CATTTGTCATAGCACCTTAT+TGG | - | tig0021787:12276-12295 | Msa1394400:intron | 35.0% | |
| ATGAAGTGTAACAGCCAATA+AGG | + | tig0021787:12293-12312 | None:intergenic | 35.0% | |
| ! | TATTGTGAATGTTTTGCGTC+GGG | - | tig0021787:12343-12362 | Msa1394400:intron | 35.0% |
| AGCGTAATCCAAATGCATTT+AGG | - | tig0021787:12455-12474 | Msa1394400:CDS | 35.0% | |
| ! | ATTTTGGGCCTAAATGCATT+TGG | + | tig0021787:12466-12485 | None:intergenic | 35.0% |
| ! | TAAGTAGGTCTAGCATTTTG+TGG | - | tig0021787:12521-12540 | Msa1394400:CDS | 35.0% |
| TATTGGAGCATATAGCGTTT+AGG | - | tig0021787:12641-12660 | Msa1394400:CDS | 35.0% | |
| ATTGGAGCATATAGCGTTTA+GGG | - | tig0021787:12642-12661 | Msa1394400:CDS | 35.0% | |
| CGACATCACTTAGTTGAATA+AGG | - | tig0021787:12738-12757 | Msa1394400:CDS | 35.0% | |
| TCACTTAGTTGAATAAGGCT+TGG | - | tig0021787:12743-12762 | Msa1394400:CDS | 35.0% | |
| TTGTTAGATACGAACGTGAA+TGG | + | tig0021787:12844-12863 | None:intergenic | 35.0% | |
| ! | AGAAAAAAGGTTTCTGGACT+TGG | - | tig0021787:12978-12997 | Msa1394400:intron | 35.0% |
| TTGACAATAAATGTAGGAGG+AGG | - | tig0021787:13079-13098 | Msa1394400:intron | 35.0% | |
| AGCATTCACAGTACTTCTTA+AGG | + | tig0021787:13166-13185 | None:intergenic | 35.0% | |
| ATTCTCAGAACAAAGAACGT+TGG | + | tig0021787:13195-13214 | None:intergenic | 35.0% | |
| ! | TTCTGAGAATTGTAGATGCA+TGG | - | tig0021787:13205-13224 | Msa1394400:intron | 35.0% |
| ! | TTTCTTTTCTTTGATGCTGG+AGG | + | tig0021787:13362-13381 | None:intergenic | 35.0% |
| ! | CCTTTTCTTTTCTTTGATGC+TGG | + | tig0021787:13365-13384 | None:intergenic | 35.0% |
| CCAGCATCAAAGAAAAGAAA+AGG | - | tig0021787:13362-13381 | Msa1394400:CDS | 35.0% | |
| !! | TATTTGCTATCTGCAGACTA+TGG | - | tig0021787:13762-13781 | Msa1394400:intron | 35.0% |
| ATCAGACCAGAAAAAAACAG+TGG | - | tig0021787:14509-14528 | Msa1394400:intron | 35.0% | |
| !!! | GCTTTTCCACTGTTTTTTTC+TGG | + | tig0021787:14518-14537 | None:intergenic | 35.0% |
| !! | ACGTCAACTTCTTTTTGACT+CGG | + | tig0021787:14594-14613 | None:intergenic | 35.0% |
| AAAAGAAGTTGACGTTGAGA+AGG | - | tig0021787:14599-14618 | Msa1394400:intron | 35.0% | |
| CATCTGAACATGAATTACCA+GGG | + | tig0021787:14671-14690 | None:intergenic | 35.0% | |
| AAATTGCGAAGATGTATTGC+AGG | + | tig0021787:14805-14824 | None:intergenic | 35.0% | |
| !!! | AAATTTTCATGCTTTGGGGA+AGG | + | tig0021787:15112-15131 | None:intergenic | 35.0% |
| TATAGATAGTCTGCTTTCCA+TGG | - | tig0021787:15390-15409 | Msa1394400:CDS | 35.0% | |
| GGAATCCGAATTCTTTCTAA+TGG | + | tig0021787:15421-15440 | None:intergenic | 35.0% | |
| ATTCGGATTCCCTTCAATAA+AGG | - | tig0021787:15430-15449 | Msa1394400:CDS | 35.0% | |
| AGCAGGATACCTTTATTGAA+GGG | + | tig0021787:15442-15461 | None:intergenic | 35.0% | |
| AAGCAGGATACCTTTATTGA+AGG | + | tig0021787:15443-15462 | None:intergenic | 35.0% | |
| !! | AATAAAGGTATCCTGCTTTC+AGG | - | tig0021787:15445-15464 | Msa1394400:CDS | 35.0% |
| ! | GAACGATCTAGATTCAAGTT+CGG | + | tig0021787:15552-15571 | None:intergenic | 35.0% |
| !! | GAACACTTTGTCTCTGAAAT+TGG | + | tig0021787:15703-15722 | None:intergenic | 35.0% |
| ! | AGAGACAAAGTGTTCTTCAT+TGG | - | tig0021787:15708-15727 | Msa1394400:five_prime_UTR | 35.0% |
| GGTTTGAAGAAGAAGGAAGA+AGG | + | tig0021787:9859-9878 | None:intergenic | 40.0% | |
| GAGAAAGGGTTTGAAGAAGA+AGG | + | tig0021787:9866-9885 | None:intergenic | 40.0% | |
| GAGAGAGAAAGTGAGAGAAA+GGG | + | tig0021787:9880-9899 | None:intergenic | 40.0% | |
| AGAGAGAGAAAGTGAGAGAA+AGG | + | tig0021787:9881-9900 | None:intergenic | 40.0% | |
| !!! | TGTGTTGTTTTAATGGCGGA+AGG | - | tig0021787:10176-10195 | Msa1394400:intron | 40.0% |
| GGATGAACAACATTCTTTGG+AGG | + | tig0021787:10218-10237 | None:intergenic | 40.0% | |
| TCCGGATGAACAACATTCTT+TGG | + | tig0021787:10221-10240 | None:intergenic | 40.0% | |
| !! | TCCGGAATTTGTTACGGTTA+CGG | - | tig0021787:10235-10254 | Msa1394400:intron | 40.0% |
| CAATTCAACACTCTTCTGTG+AGG | - | tig0021787:10477-10496 | Msa1394400:intron | 40.0% | |
| GACTGTGTTTAGTGTGTGTT+TGG | - | tig0021787:10753-10772 | Msa1394400:intron | 40.0% | |
| GAGGCAAAAGCAATTCTACA+TGG | - | tig0021787:10909-10928 | Msa1394400:intron | 40.0% | |
| AATGTATCGTGTTCTTCACG+AGG | - | tig0021787:11004-11023 | Msa1394400:CDS | 40.0% | |
| TCACGAGGATTATATGTTGG+CGG | - | tig0021787:11019-11038 | Msa1394400:CDS | 40.0% | |
| GCTTGTCAAAACACAAAGAC+AGG | + | tig0021787:11534-11553 | None:intergenic | 40.0% | |
| GTTAGGTCTTGATCTTGGTT+TGG | + | tig0021787:11614-11633 | None:intergenic | 40.0% | |
| ! | AAGGTACTCCAAAGAAGCAA+AGG | - | tig0021787:11647-11666 | Msa1394400:intron | 40.0% |
| CGTGTGTGTGTTTCTTTCAA+TGG | - | tig0021787:11732-11751 | Msa1394400:CDS | 40.0% | |
| CTACAGCAAAATTCCTGTCA+TGG | + | tig0021787:12020-12039 | None:intergenic | 40.0% | |
| ! | TTTTATCTCTCCTTTGGCAG+AGG | - | tig0021787:12252-12271 | Msa1394400:intron | 40.0% |
| AATAAATGTAGGAGGAGGCT+GGG | - | tig0021787:13084-13103 | Msa1394400:intron | 40.0% | |
| !! | GGGTGCCATTGTAAAAAATC+TGG | - | tig0021787:13137-13156 | Msa1394400:intron | 40.0% |
| !!! | GGCAGCCAGATTTTTTACAA+TGG | + | tig0021787:13145-13164 | None:intergenic | 40.0% |
| ! | ATGGACTGCAAGAACTTTGA+GGG | - | tig0021787:13224-13243 | Msa1394400:intron | 40.0% |
| CAATGTGTATCTTCAGCAAG+CGG | - | tig0021787:13289-13308 | Msa1394400:intron | 40.0% | |
| AAGGTCAGGAACTCTTCTTA+TGG | - | tig0021787:13381-13400 | Msa1394400:CDS | 40.0% | |
| ! | CTTGCTAATTGATGGATCCT+TGG | + | tig0021787:13414-13433 | None:intergenic | 40.0% |
| ! | GCAAATTTTACCTGTTGTCC+CGG | + | tig0021787:13437-13456 | None:intergenic | 40.0% |
| ! | TTACTATGTCGACTAGAGAC+TGG | + | tig0021787:13542-13561 | None:intergenic | 40.0% |
| TATCTGCAGACTATGGTGAA+TGG | - | tig0021787:13769-13788 | Msa1394400:intron | 40.0% | |
| AGACTATGGTGAATGGTATC+AGG | - | tig0021787:13776-13795 | Msa1394400:intron | 40.0% | |
| CGTGGAACAAATCCAACATT+AGG | - | tig0021787:13924-13943 | Msa1394400:intron | 40.0% | |
| GAACTGAACAAAGCTCCTTA+AGG | + | tig0021787:14082-14101 | None:intergenic | 40.0% | |
| !! | TAAGGAGCTTTGTTCAGTTC+TGG | - | tig0021787:14082-14101 | Msa1394400:intron | 40.0% |
| ! | TCAGTTCTGGTACTAGTATC+TGG | - | tig0021787:14095-14114 | Msa1394400:intron | 40.0% |
| TGACTGGTATTAACCTAGAG+AGG | - | tig0021787:14230-14249 | Msa1394400:CDS | 40.0% | |
| TGGAAAAGTGACACGTATAG+AGG | + | tig0021787:14260-14279 | None:intergenic | 40.0% | |
| GTGAGCCTGATTATGAAAAC+AGG | + | tig0021787:14290-14309 | None:intergenic | 40.0% | |
| GATTATGCACTAGAGTCTAG+AGG | + | tig0021787:14388-14407 | None:intergenic | 40.0% | |
| CTGAGAATCACACTAAGGAT+CGG | - | tig0021787:14426-14445 | Msa1394400:intron | 40.0% | |
| !! | CTCTTGAGTTGATGAAGCAA+GGG | + | tig0021787:14565-14584 | None:intergenic | 40.0% |
| CAAACAGATAAAATCAGCCC+TGG | - | tig0021787:14651-14670 | Msa1394400:intron | 40.0% | |
| CCATCTGAACATGAATTACC+AGG | + | tig0021787:14672-14691 | None:intergenic | 40.0% | |
| CCTGGTAATTCATGTTCAGA+TGG | - | tig0021787:14669-14688 | Msa1394400:intron | 40.0% | |
| ATCTTGTTCGTCACACATCA+AGG | + | tig0021787:14736-14755 | None:intergenic | 40.0% | |
| ACATCTTCGCAATTTCCTGA+CGG | - | tig0021787:14810-14829 | Msa1394400:intron | 40.0% | |
| ! | AGGGTCAAAGCACTAAAGAT+AGG | - | tig0021787:15283-15302 | Msa1394400:intron | 40.0% |
| ! | GGGTCAAAGCACTAAAGATA+GGG | - | tig0021787:15284-15303 | Msa1394400:intron | 40.0% |
| ! | GGTCAAAGCACTAAAGATAG+GGG | - | tig0021787:15285-15304 | Msa1394400:intron | 40.0% |
| TAAAGATAGGGGCAATGGTT+TGG | - | tig0021787:15296-15315 | Msa1394400:intron | 40.0% | |
| TCTTTCTAATGGCATTGCCA+TGG | + | tig0021787:15410-15429 | None:intergenic | 40.0% | |
| ! | AAGGGAAATTGGTGGTCATT+CGG | - | tig0021787:15472-15491 | Msa1394400:CDS | 40.0% |
| TATTCACTCAGTCTGGACAT+CGG | + | tig0021787:15594-15613 | None:intergenic | 40.0% | |
| ATGTCCAGACTGAGTGAATA+TGG | - | tig0021787:15594-15613 | Msa1394400:CDS | 40.0% | |
| TGTCCAGACTGAGTGAATAT+GGG | - | tig0021787:15595-15614 | Msa1394400:CDS | 40.0% | |
| CTGATGTACTATCTCAGTAC+TGG | + | tig0021787:15788-15807 | None:intergenic | 40.0% | |
| TACTGAGATAGTACATCAGC+AGG | - | tig0021787:15789-15808 | Msa1394400:five_prime_UTR | 40.0% | |
| TTTGACATCACCATTGCTAG+TGG | + | tig0021787:15818-15837 | None:intergenic | 40.0% | |
| GTTGAAGTTGTGGCAATATG+TGG | + | tig0021787:15916-15935 | None:intergenic | 40.0% | |
| ! | CTCTTTTTCCATCTTCAGCT+TGG | + | tig0021787:16013-16032 | None:intergenic | 40.0% |
| ! | GAGAGAGAGAAAGTGTGTGA+AGG | + | tig0021787:9909-9928 | None:intergenic | 45.0% |
| !! | GTTTTAATGGCGGAAGGTGA+AGG | - | tig0021787:10182-10201 | Msa1394400:intron | 45.0% |
| GCCGTAACCGTAACAAATTC+CGG | + | tig0021787:10239-10258 | None:intergenic | 45.0% | |
| ! | ATTTGTTACGGTTACGGCTG+CGG | - | tig0021787:10241-10260 | Msa1394400:intron | 45.0% |
| !! | GAGTGTTGAATTGTCTGCAC+CGG | + | tig0021787:10470-10489 | None:intergenic | 45.0% |
| AACACTCTTCTGTGAGGGTT+GGG | - | tig0021787:10483-10502 | Msa1394400:intron | 45.0% | |
| CACGAGGATTATATGTTGGC+GGG | - | tig0021787:11020-11039 | Msa1394400:CDS | 45.0% | |
| GTTACGGCTTGAAGTGAAGT+AGG | - | tig0021787:11243-11262 | Msa1394400:CDS | 45.0% | |
| GAACAGAGTGTGTCAAACAG+CGG | + | tig0021787:11372-11391 | None:intergenic | 45.0% | |
| TTGCACTGCCTTTGCTTCTT+TGG | + | tig0021787:11658-11677 | None:intergenic | 45.0% | |
| AGTGTGTGCATAGCATGTAC+TGG | - | tig0021787:11798-11817 | Msa1394400:CDS | 45.0% | |
| GGGAAATTCATACCCACTGT+GGG | + | tig0021787:11980-11999 | None:intergenic | 45.0% | |
| AATTCCTGTCATGGCAAGGT+CGG | + | tig0021787:12011-12030 | None:intergenic | 45.0% | |
| GCAAAATTCCTGTCATGGCA+AGG | + | tig0021787:12015-12034 | None:intergenic | 45.0% | |
| GTATAGTCATGGGTTTCCCA+TGG | - | tig0021787:12150-12169 | Msa1394400:intron | 45.0% | |
| TTGAGCCTAACTTTGGCCAT+GGG | + | tig0021787:12169-12188 | None:intergenic | 45.0% | |
| TTTGAGCCTAACTTTGGCCA+TGG | + | tig0021787:12170-12189 | None:intergenic | 45.0% | |
| TGACAAATGACCTCTGCCAA+AGG | + | tig0021787:12265-12284 | None:intergenic | 45.0% | |
| GCGTCGGGAATATATTGTGA+TGG | - | tig0021787:12358-12377 | Msa1394400:intron | 45.0% | |
| ! | TAGGTCTAGCATTTTGTGGC+AGG | - | tig0021787:12525-12544 | Msa1394400:CDS | 45.0% |
| ! | ACTAAGTGATGTCGGCTACA+TGG | + | tig0021787:12732-12751 | None:intergenic | 45.0% |
| TGCACATCTTCGCAAGAAGT+TGG | - | tig0021787:12864-12883 | Msa1394400:intron | 45.0% | |
| CATCTTCGCAAGAAGTTGGA+TGG | - | tig0021787:12868-12887 | Msa1394400:intron | 45.0% | |
| GCAAGAAGTTGGATGGTTTC+TGG | - | tig0021787:12875-12894 | Msa1394400:intron | 45.0% | |
| CAATAAATGTAGGAGGAGGC+TGG | - | tig0021787:13083-13102 | Msa1394400:intron | 45.0% | |
| ATAAATGTAGGAGGAGGCTG+GGG | - | tig0021787:13085-13104 | Msa1394400:intron | 45.0% | |
| ! | CAGAACAAAGAACGTTGGCT+TGG | + | tig0021787:13190-13209 | None:intergenic | 45.0% |
| ! | CATGGACTGCAAGAACTTTG+AGG | - | tig0021787:13223-13242 | Msa1394400:intron | 45.0% |
| GGAACCAATAGCTCCAGTTA+TGG | + | tig0021787:13324-13343 | None:intergenic | 45.0% | |
| !! | ACTGGAGCTATTGGTTCCTA+CGG | - | tig0021787:13326-13345 | Msa1394400:intron | 45.0% |
| ! | ATTGATGGATCCTTGGCTGT+AGG | + | tig0021787:13407-13426 | None:intergenic | 45.0% |
| GGATCCATCAATTAGCAAGC+CGG | - | tig0021787:13415-13434 | Msa1394400:CDS | 45.0% | |
| GATCCATCAATTAGCAAGCC+GGG | - | tig0021787:13416-13435 | Msa1394400:CDS | 45.0% | |
| GCTCATTGCACAAGTAGTAC+TGG | - | tig0021787:13455-13474 | Msa1394400:CDS | 45.0% | |
| !! | TGCACAAGTAGTACTGGTAC+AGG | - | tig0021787:13461-13480 | Msa1394400:CDS | 45.0% |
| !! | GCACAAGTAGTACTGGTACA+GGG | - | tig0021787:13462-13481 | Msa1394400:CDS | 45.0% |
| TGTCAGGTGAACCTTGTCAA+AGG | - | tig0021787:13861-13880 | Msa1394400:intron | 45.0% | |
| ! | GATGGACTCTGACCTAATGT+TGG | + | tig0021787:13939-13958 | None:intergenic | 45.0% |
| TGTACAGCCACATCACCTTA+AGG | - | tig0021787:14064-14083 | Msa1394400:intron | 45.0% | |
| CAAAGCTCCTTAAGGTGATG+TGG | + | tig0021787:14074-14093 | None:intergenic | 45.0% | |
| GTATAGAGGAAAGCCTCTCT+AGG | + | tig0021787:14246-14265 | None:intergenic | 45.0% | |
| CAGAGCTGAGAATCACACTA+AGG | - | tig0021787:14421-14440 | Msa1394400:intron | 45.0% | |
| !! | GCTCTTGAGTTGATGAAGCA+AGG | + | tig0021787:14566-14585 | None:intergenic | 45.0% |
| AGTTGACGTTGAGAAGGCTA+TGG | - | tig0021787:14605-14624 | Msa1394400:intron | 45.0% | |
| CGAAGATGTATTGCAGGCAT+GGG | + | tig0021787:14799-14818 | None:intergenic | 45.0% | |
| AGCACTAAAGATAGGGGCAA+TGG | - | tig0021787:15291-15310 | Msa1394400:intron | 45.0% | |
| TTTCAGGCAGCAAGGGAAAT+TGG | - | tig0021787:15461-15480 | Msa1394400:CDS | 45.0% | |
| CGGTAGTCATTCGATCAAGA+TGG | + | tig0021787:15574-15593 | None:intergenic | 45.0% | |
| GTCCAGACTGAGTGAATATG+GGG | - | tig0021787:15596-15615 | Msa1394400:CDS | 45.0% | |
| TTCCCCATATTCACTCAGTC+TGG | + | tig0021787:15601-15620 | None:intergenic | 45.0% | |
| ATGGGGAATCCATGACTACT+AGG | - | tig0021787:15613-15632 | Msa1394400:CDS | 45.0% | |
| TGGGGAATCCATGACTACTA+GGG | - | tig0021787:15614-15633 | Msa1394400:CDS | 45.0% | |
| ATGTAGCTCCCTAGTAGTCA+TGG | + | tig0021787:15625-15644 | None:intergenic | 45.0% | |
| CAAAGCTGCATTTCCACCTA+TGG | - | tig0021787:15834-15853 | Msa1394400:five_prime_UTR | 45.0% | |
| !! | AACTGCAGGTGTTGAAGTTG+CGG | + | tig0021787:15860-15879 | None:intergenic | 45.0% |
| !! | AACTGCAGGTGTTGAAGTTG+TGG | + | tig0021787:15860-15879 | None:intergenic | 45.0% |
| !! | AACTGCAGGTGTTGAAGTTG+TGG | + | tig0021787:15860-15879 | None:intergenic | 45.0% |
| ACAGTATCAATAGGGACCAC+AGG | + | tig0021787:15973-15992 | None:intergenic | 45.0% | |
| TGGAGAATCCAAGCTGAAGA+TGG | - | tig0021787:16002-16021 | Msa1394400:five_prime_UTR | 45.0% | |
| !!! | AAATTTATTTGTTTTTAATA+GGG | + | tig0021787:12053-12072 | None:intergenic | 5.0% |
| !!! | AAAATTTATTTGTTTTTAAT+AGG | + | tig0021787:12054-12073 | None:intergenic | 5.0% |
| !! | GTAAAATTAAATTAAAAATA+AGG | + | tig0021787:14949-14968 | None:intergenic | 5.0% |
| !!! | TTTTAATTTAATTTTACATT+TGG | - | tig0021787:14952-14971 | Msa1394400:intron | 5.0% |
| GAGGGAAGAATCGTAATCGG+TGG | - | tig0021787:10097-10116 | Msa1394400:CDS | 50.0% | |
| GGAAGAATCGTAATCGGTGG+TGG | - | tig0021787:10100-10119 | Msa1394400:CDS | 50.0% | |
| ! | TTAATGGCGGAAGGTGAAGG+AGG | - | tig0021787:10185-10204 | Msa1394400:intron | 50.0% |
| TGTTGAACCACCTGCTGTTG+CGG | + | tig0021787:10380-10399 | None:intergenic | 50.0% | |
| CAACAGCAGGTGGTTCAACA+GGG | - | tig0021787:10380-10399 | Msa1394400:intron | 50.0% | |
| AACAGCAGGTGGTTCAACAG+GGG | - | tig0021787:10381-10400 | Msa1394400:intron | 50.0% | |
| CAACACTCTTCTGTGAGGGT+TGG | - | tig0021787:10482-10501 | Msa1394400:intron | 50.0% | |
| AAGTAGGCACTTCCCAGTCA+TGG | - | tig0021787:11259-11278 | Msa1394400:CDS | 50.0% | |
| ! | CTGTTTGCAATCGCGGATTG+TGG | - | tig0021787:11291-11310 | Msa1394400:CDS | 50.0% |
| GTGTCAAACAGCGGCTATAG+TGG | + | tig0021787:11363-11382 | None:intergenic | 50.0% | |
| ACTGGCGCATGTTCTCACAT+TGG | - | tig0021787:11816-11835 | Msa1394400:intron | 50.0% | |
| CATCTAACTGGACCCACAGT+GGG | - | tig0021787:11965-11984 | Msa1394400:CDS | 50.0% | |
| CGGGAAATTCATACCCACTG+TGG | + | tig0021787:11981-12000 | None:intergenic | 50.0% | |
| GGTTTCCCATGGCCAAAGTT+AGG | - | tig0021787:12161-12180 | Msa1394400:intron | 50.0% | |
| CAATGAAGCTGCTAGACGAG+AGG | - | tig0021787:12414-12433 | Msa1394400:intron | 50.0% | |
| ! | TGAGGGCTGCTCGCAATTTT+GGG | + | tig0021787:12481-12500 | None:intergenic | 50.0% |
| AAAATTGCGAGCAGCCCTCA+GGG | - | tig0021787:12481-12500 | Msa1394400:CDS | 50.0% | |
| TGAGGGAAGTGAAGAGAGAC+AGG | - | tig0021787:13241-13260 | Msa1394400:intron | 50.0% | |
| !! | GAGAGACAGGCTTTGTTTCG+TGG | - | tig0021787:13254-13273 | Msa1394400:intron | 50.0% |
| GCTGCCATAACTGGAGCTAT+TGG | - | tig0021787:13317-13336 | Msa1394400:intron | 50.0% | |
| TGGAGGTGATGAAAAGCCGT+AGG | + | tig0021787:13345-13364 | None:intergenic | 50.0% | |
| CTTCTTATGGCCTACAGCCA+AGG | - | tig0021787:13394-13413 | Msa1394400:CDS | 50.0% | |
| !! | TGTCCCGGCTTGCTAATTGA+TGG | + | tig0021787:13422-13441 | None:intergenic | 50.0% |
| AATTAGCAAGCCGGGACAAC+AGG | - | tig0021787:13424-13443 | Msa1394400:CDS | 50.0% | |
| ACAGGTGAAGCTGATGAGGA+GGG | + | tig0021787:13894-13913 | None:intergenic | 50.0% | |
| TGAGACAGGTGAAGCTGATG+AGG | + | tig0021787:13898-13917 | None:intergenic | 50.0% | |
| ! | CAGGAGACATCGGTCTTTTC+GGG | + | tig0021787:14704-14723 | None:intergenic | 50.0% |
| ! | CCAGGAGACATCGGTCTTTT+CGG | + | tig0021787:14705-14724 | None:intergenic | 50.0% |
| CGAAAAGACCGATGTCTCCT+GGG | - | tig0021787:14703-14722 | Msa1394400:intron | 50.0% | |
| GCTAAAGTCCCAGGAGACAT+CGG | + | tig0021787:14714-14733 | None:intergenic | 50.0% | |
| CACATCAAGGCTAAAGTCCC+AGG | + | tig0021787:14723-14742 | None:intergenic | 50.0% | |
| GCGAAGATGTATTGCAGGCA+TGG | + | tig0021787:14800-14819 | None:intergenic | 50.0% | |
| ! | TCGCAATTTCCTGACGGACA+AGG | - | tig0021787:14816-14835 | Msa1394400:intron | 50.0% |
| TATCCTGCTTTCAGGCAGCA+AGG | - | tig0021787:15453-15472 | Msa1394400:CDS | 50.0% | |
| ATCCTGCTTTCAGGCAGCAA+GGG | - | tig0021787:15454-15473 | Msa1394400:CDS | 50.0% | |
| AACACCTGCAGTTCCACCTA+TGG | - | tig0021787:15867-15886 | Msa1394400:five_prime_UTR | 50.0% | |
| GTTGAAGTTGTGGCCATAGG+TGG | + | tig0021787:15883-15902 | None:intergenic | 50.0% | |
| ! | GGTGTTGAAGTTGTGGCCAT+AGG | + | tig0021787:15886-15905 | None:intergenic | 50.0% |
| GTGGCAATATGTGGAACTGC+AGG | + | tig0021787:15907-15926 | None:intergenic | 50.0% | |
| AACACCTGCAGTTCCACCTA+TGG | - | tig0021787:15867-15886 | Msa1394400:five_prime_UTR | 50.0% | |
| !! | GACCACAGGTGTTGAAGTTG+CGG | + | tig0021787:15959-15978 | None:intergenic | 50.0% |
| TACCGTCGAAGAAGCTAGCG+AGG | - | tig0021787:10315-10334 | Msa1394400:intron | 55.0% | |
| ! | TGCCTCGCTAGCTTCTTCGA+CGG | + | tig0021787:10320-10339 | None:intergenic | 55.0% |
| GCAACAGCAGGTGGTTCAAC+AGG | - | tig0021787:10379-10398 | Msa1394400:intron | 55.0% | |
| !! | GGTTCAACAGGGGAGTGTCA+CGG | - | tig0021787:10391-10410 | Msa1394400:intron | 55.0% |
| GAGTGTCACGGTGCAGAAAC+CGG | - | tig0021787:10403-10422 | Msa1394400:intron | 55.0% | |
| GTGCAGAAACCGGTTGGAGT+GGG | - | tig0021787:10413-10432 | Msa1394400:intron | 55.0% | |
| ! | AGTGGGTGGTTTGCCGATAC+CGG | - | tig0021787:10430-10449 | Msa1394400:intron | 55.0% |
| ! | TGGTTTGCCGATACCGGTAC+CGG | - | tig0021787:10436-10455 | Msa1394400:intron | 55.0% |
| ! | TGAATTGTCTGCACCGGCGT+TGG | + | tig0021787:10464-10483 | None:intergenic | 55.0% |
| GCATCTAACTGGACCCACAG+TGG | - | tig0021787:11964-11983 | Msa1394400:CDS | 55.0% | |
| ! | CTGAGGGCTGCTCGCAATTT+TGG | + | tig0021787:12482-12501 | None:intergenic | 55.0% |
| CAAAATTGCGAGCAGCCCTC+AGG | - | tig0021787:12480-12499 | Msa1394400:CDS | 55.0% | |
| CACGCGATAGCAGGGTAAGT+AGG | - | tig0021787:12506-12525 | Msa1394400:CDS | 55.0% | |
| GCGGCAAATGCTGCCATAAC+TGG | - | tig0021787:13308-13327 | Msa1394400:intron | 55.0% | |
| !! | AGGGTGCTGGACCTTTGACA+AGG | + | tig0021787:13875-13894 | None:intergenic | 55.0% |
| GACAGGTGAAGCTGATGAGG+AGG | + | tig0021787:13895-13914 | None:intergenic | 55.0% | |
| TCACCTGTCTCAAGTGCTCG+TGG | - | tig0021787:13906-13925 | Msa1394400:intron | 55.0% | |
| GTTCCACGAGCACTTGAGAC+AGG | + | tig0021787:13912-13931 | None:intergenic | 55.0% | |
| CTGCAAGCGTCTTTGCAGCT+TGG | + | tig0021787:14121-14140 | None:intergenic | 55.0% | |
| CAAGCTGCAAAGACGCTTGC+AGG | - | tig0021787:14119-14138 | Msa1394400:intron | 55.0% | |
| CCGAAAAGACCGATGTCTCC+TGG | - | tig0021787:14702-14721 | Msa1394400:intron | 55.0% | |
| ATGACAGCTGCCTCTCCCAT+CGG | - | tig0021787:14765-14784 | Msa1394400:intron | 55.0% | |
| TCTGTCACTCCTTGTCCGTC+AGG | + | tig0021787:14828-14847 | None:intergenic | 55.0% | |
| ! | TGACGGACAAGGAGTGACAG+AGG | - | tig0021787:14827-14846 | Msa1394400:intron | 55.0% |
| TTCCCTTGCTGCCTGAAAGC+AGG | + | tig0021787:15459-15478 | None:intergenic | 55.0% | |
| CAGGCAGCAAGGGAAATTGG+TGG | - | tig0021787:15464-15483 | Msa1394400:CDS | 55.0% | |
| CAGCAGGAAGCCACTAGCAA+TGG | - | tig0021787:15805-15824 | Msa1394400:five_prime_UTR | 55.0% | |
| GTTGAAGTTGCGGCCATAGG+TGG | + | tig0021787:15850-15869 | None:intergenic | 55.0% | |
| ! | GGTGTTGAAGTTGCGGCCAT+AGG | + | tig0021787:15853-15872 | None:intergenic | 55.0% |
| GTTGAAGTTGCGGCCATAGG+TGG | + | tig0021787:15850-15869 | None:intergenic | 55.0% | |
| ! | GGTGTTGAAGTTGCGGCCAT+AGG | + | tig0021787:15853-15872 | None:intergenic | 55.0% |
| GGCTGCAAATGCGACTGCGA+CGG | - | tig0021787:10280-10299 | Msa1394400:intron | 60.0% | |
| GCAGTCGAAACCGCAACAGC+AGG | - | tig0021787:10367-10386 | Msa1394400:intron | 60.0% | |
| GTCGAAACCGCAACAGCAGG+TGG | - | tig0021787:10370-10389 | Msa1394400:intron | 60.0% | |
| GTCACGGTGCAGAAACCGGT+TGG | - | tig0021787:10407-10426 | Msa1394400:intron | 60.0% | |
| GGTGCAGAAACCGGTTGGAG+TGG | - | tig0021787:10412-10431 | Msa1394400:intron | 60.0% | |
| CAGAAACCGGTTGGAGTGGG+TGG | - | tig0021787:10416-10435 | Msa1394400:intron | 60.0% | |
| GGCAAACCACCCACTCCAAC+CGG | + | tig0021787:10425-10444 | None:intergenic | 60.0% | |
| !! | GTTGGCACCGGTACCGGTAT+CGG | + | tig0021787:10446-10465 | None:intergenic | 60.0% |
| TCCTGTCATGGCAAGGTCGG+CGG | + | tig0021787:12008-12027 | None:intergenic | 60.0% | |
| TGCTATCGCGTGCTCCCTGA+GGG | + | tig0021787:12498-12517 | None:intergenic | 60.0% | |
| ! | TCAGGGAGCACGCGATAGCA+GGG | - | tig0021787:12498-12517 | Msa1394400:CDS | 60.0% |
| ATGTAGGAGGAGGCTGGGGA+AGG | - | tig0021787:13089-13108 | Msa1394400:intron | 60.0% | |
| ! | GAAGCTGATGAGGAGGGTGC+TGG | + | tig0021787:13888-13907 | None:intergenic | 60.0% |
| TGACAGCTGCCTCTCCCATC+GGG | - | tig0021787:14766-14785 | Msa1394400:intron | 60.0% | |
| GCATGGGTCGTTTGCCCGAT+GGG | + | tig0021787:14783-14802 | None:intergenic | 60.0% | |
| GTGGCCATAGGTGGAACTGC+AGG | + | tig0021787:15874-15893 | None:intergenic | 60.0% | |
| GGCCGCAACTTCAACACCTG+TGG | - | tig0021787:15855-15874 | Msa1394400:five_prime_UTR | 60.0% | |
| GGTTACGGCTGCGGCTGCAA+CGG | - | tig0021787:10250-10269 | Msa1394400:intron | 65.0% | |
| CAAATGCGACTGCGACGGCG+TGG | - | tig0021787:10285-10304 | Msa1394400:intron | 65.0% | |
| GTCATGGCAAGGTCGGCGGA+CGG | + | tig0021787:12004-12023 | None:intergenic | 65.0% | |
| TCCGCCGACCTTGCCATGAC+AGG | - | tig0021787:12004-12023 | Msa1394400:intron | 65.0% | |
| CTGCTATCGCGTGCTCCCTG+AGG | + | tig0021787:12499-12518 | None:intergenic | 65.0% | |
| ! | CTCAGGGAGCACGCGATAGC+AGG | - | tig0021787:12497-12516 | Msa1394400:CDS | 65.0% |
| GGTCGTTTGCCCGATGGGAG+AGG | + | tig0021787:14778-14797 | None:intergenic | 65.0% | |
| GGCATGGGTCGTTTGCCCGA+TGG | + | tig0021787:14784-14803 | None:intergenic | 65.0% | |
| GCGGCCATAGGTGGAACTGC+AGG | + | tig0021787:15940-15959 | None:intergenic | 65.0% | |
| TACGGCTGCGGCTGCAACGG+CGG | - | tig0021787:10253-10272 | Msa1394400:intron | 70.0% | |
| TGCGACTGCGACGGCGTGGT+TGG | - | tig0021787:10289-10308 | Msa1394400:intron | 70.0% | |
| !! | ACCGGTACCGGTGCCAACGC+CGG | - | tig0021787:10448-10467 | Msa1394400:intron | 70.0% |
| !! | ACCGGCGTTGGCACCGGTAC+CGG | + | tig0021787:10452-10471 | None:intergenic | 70.0% |
| !! | GTCTGCACCGGCGTTGGCAC+CGG | + | tig0021787:10458-10477 | None:intergenic | 70.0% |
| ATGGCAAGGTCGGCGGACGG+CGG | + | tig0021787:12001-12020 | None:intergenic | 70.0% | |
| TGCGGCTGCAACGGCGGCTG+CGG | - | tig0021787:10259-10278 | Msa1394400:intron | 75.0% | |
| TGGCAAGGTCGGCGGACGGC+GGG | + | tig0021787:12000-12019 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021787 | gene | 9826 | 16038 | 9826 | ID=Msa1394400;Name=Msa1394400 |
| tig0021787 | mRNA | 9826 | 16038 | 9826 | ID=Msa1394400-mRNA-1;Parent=Msa1394400;Name=Msa1394400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=362|1|0.87|1|1|1|8|0|633 |
| tig0021787 | exon | 9826 | 10154 | 9826 | ID=Msa1394400-mRNA-1:exon:14346;Parent=Msa1394400-mRNA-1 |
| tig0021787 | exon | 10934 | 11350 | 10934 | ID=Msa1394400-mRNA-1:exon:14345;Parent=Msa1394400-mRNA-1 |
| tig0021787 | exon | 11724 | 11818 | 11724 | ID=Msa1394400-mRNA-1:exon:14344;Parent=Msa1394400-mRNA-1 |
| tig0021787 | exon | 11891 | 11997 | 11891 | ID=Msa1394400-mRNA-1:exon:14343;Parent=Msa1394400-mRNA-1 |
| tig0021787 | exon | 12419 | 12769 | 12419 | ID=Msa1394400-mRNA-1:exon:14342;Parent=Msa1394400-mRNA-1 |
| tig0021787 | exon | 13345 | 13522 | 13345 | ID=Msa1394400-mRNA-1:exon:14341;Parent=Msa1394400-mRNA-1 |
| tig0021787 | exon | 14160 | 14267 | 14160 | ID=Msa1394400-mRNA-1:exon:14340;Parent=Msa1394400-mRNA-1 |
| tig0021787 | exon | 15360 | 16038 | 15360 | ID=Msa1394400-mRNA-1:exon:14339;Parent=Msa1394400-mRNA-1 |
| tig0021787 | five_prime_UTR | 15677 | 16038 | 15677 | ID=Msa1394400-mRNA-1:five_prime_utr;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 15360 | 15676 | 15360 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 14160 | 14267 | 14160 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 13345 | 13522 | 13345 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 12419 | 12769 | 12419 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 11891 | 11997 | 11891 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 11724 | 11818 | 11724 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 10934 | 11350 | 10934 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| tig0021787 | CDS | 9826 | 10154 | 9826 | ID=Msa1394400-mRNA-1:cds;Parent=Msa1394400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
