Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965200 | XP_024641228.1 | 84.712 | 713 | 53 | 4 | 22 | 685 | 1 | 706 | 0.0 | 1189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965200 | sp|B3CLY6|TILS_WOLPP | 28.839 | 267 | 134 | 6 | 110 | 350 | 17 | 253 | 6.99e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965200 | A0A0C3VZL5 | 84.669 | 711 | 53 | 4 | 22 | 683 | 1 | 704 | 0.0 | 1184 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0965200 | Msa1394450 | 0.917842 | 3.241485e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965200 | MtrunA17_Chr6g0485791 | 86.595 | 373 | 27 | 3 | 22 | 372 | 1 | 372 | 0.0 | 625 |
| Msa0965200 | MtrunA17_Chr6g0485801 | 89.172 | 314 | 27 | 1 | 372 | 685 | 10 | 316 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965200 | AT3G24560.2 | 44.813 | 723 | 277 | 13 | 22 | 685 | 1 | 660 | 0.0 | 546 |
| Msa0965200 | AT3G24560.1 | 45.328 | 503 | 198 | 8 | 212 | 685 | 8 | 462 | 5.64e-129 | 389 |
| Msa0965200 | AT3G24560.3 | 45.328 | 503 | 198 | 8 | 212 | 685 | 2 | 456 | 6.27e-129 | 389 |
Find 175 sgRNAs with CRISPR-Local
Find 429 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTGTGCGGCCTCTTC+TGG | 0.128207 | 6_3:+92497110 | Msa0965200:CDS |
| TCATGATTGCAAGGATATTT+TGG | 0.176239 | 6_3:+92500786 | Msa0965200:three_prime_UTR |
| TCAGCAAATTCCATCTTTAA+AGG | 0.198649 | 6_3:-92499257 | None:intergenic |
| CTTTCCGATTTAGTTGATTA+TGG | 0.233286 | 6_3:+92499662 | Msa0965200:CDS |
| ATTTCTTTCCTTGGTCTTGC+AGG | 0.253441 | 6_3:+92497839 | Msa0965200:CDS |
| GCTTCATCCAGAACTGATTC+AGG | 0.262848 | 6_3:-92499407 | None:intergenic |
| TACTGGCAAGTTATGGCTTC+TGG | 0.264429 | 6_3:-92500926 | None:intergenic |
| ATGGAAGTTGAATGATAAAA+TGG | 0.265012 | 6_3:+92499628 | Msa0965200:CDS |
| CAAGCATTGCTCTTGCTTGA+TGG | 0.271547 | 6_3:+92500671 | Msa0965200:CDS |
| TCCTATTCCGTGTGAATAAC+TGG | 0.290837 | 6_3:-92497311 | None:intergenic |
| CCTGATGAAATTTCTTTCCT+TGG | 0.294656 | 6_3:+92497830 | Msa0965200:CDS |
| AGCAAGAAACCGACCGCTTC+AGG | 0.299346 | 6_3:+92499486 | Msa0965200:CDS |
| GTGTATGCATAGGGAAAATC+TGG | 0.300879 | 6_3:-92497053 | None:intergenic |
| AAGCTTCTCCTTGCAGCAAC+TGG | 0.300949 | 6_3:-92499947 | None:intergenic |
| CTGTCAGCTTTGGGAGTCTC+TGG | 0.304586 | 6_3:+92495954 | Msa0965200:intron |
| TCGTAACCGCGTTTCTCAAA+TGG | 0.309716 | 6_3:+92496136 | Msa0965200:CDS |
| GATGAAACAGAGGAAGGTTT+TGG | 0.330354 | 6_3:-92494206 | None:intergenic |
| TTTCTTAGTAAAATATGATT+TGG | 0.340149 | 6_3:+92501164 | Msa0965200:three_prime_UTR |
| AGAAGGATGCCTTGATTTGC+CGG | 0.348038 | 6_3:-92497093 | None:intergenic |
| GTCAGAAATGGCTCCAACTT+TGG | 0.353963 | 6_3:-92499510 | None:intergenic |
| CGCTGGTTGTTACCTTTGTC+CGG | 0.354780 | 6_3:+92499178 | Msa0965200:CDS |
| CCATGTTGATTGATCAGAAC+AGG | 0.354843 | 6_3:-92499971 | None:intergenic |
| TGTCCGGATCCTGGTTCTAA+AGG | 0.363993 | 6_3:+92499194 | Msa0965200:CDS |
| TAACCACAGCATGATGTATT+AGG | 0.365616 | 6_3:-92497590 | None:intergenic |
| GTTCCGACTGAAAGAGGTTA+TGG | 0.372302 | 6_3:+92494064 | Msa0965200:CDS |
| GACATGCAGAAATCACTCTT+TGG | 0.377797 | 6_3:-92497530 | None:intergenic |
| TTCGGGCAATTCGCTTCAGC+CGG | 0.382554 | 6_3:+92499568 | Msa0965200:CDS |
| GATGCTTAACATGATCTATA+AGG | 0.388009 | 6_3:+92501043 | Msa0965200:three_prime_UTR |
| ACAGCAATGCTCAATTGATA+TGG | 0.391669 | 6_3:+92494271 | Msa0965200:CDS |
| GTAACAAAGTACAGTGGAAC+AGG | 0.395195 | 6_3:+92494027 | Msa0965200:CDS |
| CATTGCTTTACCTTTAAAGA+TGG | 0.397110 | 6_3:+92499247 | Msa0965200:CDS |
| AGGTCATAGCTCATTCATAT+AGG | 0.404232 | 6_3:+92500731 | Msa0965200:CDS |
| TTAAGACTTTCTCGAAATAG+TGG | 0.404893 | 6_3:+92496997 | Msa0965200:CDS |
| ATCAAACCACACCATAGAAT+TGG | 0.408439 | 6_3:+92494338 | Msa0965200:CDS |
| ACATAGGTTTAGCTTATGTT+TGG | 0.412372 | 6_3:+92494005 | None:intergenic |
| TTTGTTCATGTTCTTCATCC+AGG | 0.412525 | 6_3:+92501080 | Msa0965200:three_prime_UTR |
| GTCCGGATCCTGGTTCTAAA+GGG | 0.413050 | 6_3:+92499195 | Msa0965200:CDS |
| TGTTACCTTTGTCCGGATCC+TGG | 0.416475 | 6_3:+92499185 | Msa0965200:CDS |
| TGTGAACCCTGAATCAGTTC+TGG | 0.416926 | 6_3:+92499400 | Msa0965200:CDS |
| GACAGTAGTGGTTTCGTTGA+CGG | 0.418599 | 6_3:+92496050 | Msa0965200:CDS |
| AGTGGTGTGCTTGGACTTGC+AGG | 0.422762 | 6_3:+92497015 | Msa0965200:CDS |
| CAGTACAAGAATGCTATTGT+AGG | 0.430481 | 6_3:-92499459 | None:intergenic |
| GATCTATAAGGAATGTAGAT+TGG | 0.430606 | 6_3:+92501055 | Msa0965200:three_prime_UTR |
| CGTAACCGCGTTTCTCAAAT+GGG | 0.431052 | 6_3:+92496137 | Msa0965200:CDS |
| TCCACTTCCATCTGGAGTCC+TGG | 0.431298 | 6_3:-92501098 | None:intergenic |
| GGGGCAGTGCTGTTACTTCA+TGG | 0.438369 | 6_3:+92499589 | Msa0965200:CDS |
| CAACACTCCAATCTGGTGTT+TGG | 0.438925 | 6_3:-92496786 | None:intergenic |
| AGAACAGCAAACTAGGACTC+TGG | 0.440719 | 6_3:-92499219 | None:intergenic |
| CATGTTCTACTGGCAAGTTA+TGG | 0.442767 | 6_3:-92500933 | None:intergenic |
| CATGCCATAATCAACTAAAT+CGG | 0.443098 | 6_3:-92499666 | None:intergenic |
| GGTCATAGCTCATTCATATA+GGG | 0.450315 | 6_3:+92500732 | Msa0965200:CDS |
| TGGGTCTTCTACCCACTCTT+CGG | 0.451167 | 6_3:-92497277 | None:intergenic |
| TGTTGCTCGTCTTGTGTGGT+TGG | 0.453908 | 6_3:+92499716 | Msa0965200:CDS |
| TCGGGCAATTCGCTTCAGCC+GGG | 0.455571 | 6_3:+92499569 | Msa0965200:CDS |
| ACCAGTTATTCACACGGAAT+AGG | 0.457760 | 6_3:+92497310 | Msa0965200:CDS |
| ACATTTCAAGTCAACCGAAA+AGG | 0.458200 | 6_3:+92500865 | Msa0965200:three_prime_UTR |
| TCGGTTGACTTGAAATGTGT+TGG | 0.459493 | 6_3:-92500860 | None:intergenic |
| TATGAGGTTATGTCAGCAAA+TGG | 0.461068 | 6_3:+92499836 | Msa0965200:CDS |
| CGGTTGACTTGAAATGTGTT+GGG | 0.463168 | 6_3:-92500859 | None:intergenic |
| TCTTTGTCCTTCTAAAATTG+AGG | 0.463457 | 6_3:+92497800 | Msa0965200:CDS |
| CTAATAAGCTCATGTTCTAC+TGG | 0.464965 | 6_3:-92500943 | None:intergenic |
| TTTGAGCATCCACTTCCATC+TGG | 0.465303 | 6_3:-92501106 | None:intergenic |
| CATTTCAAGTCAACCGAAAA+GGG | 0.480333 | 6_3:+92500866 | Msa0965200:three_prime_UTR |
| CAATAAGCAACACTCCAATC+TGG | 0.481490 | 6_3:-92496793 | None:intergenic |
| CCAAGGAAAGAAATTTCATC+AGG | 0.482131 | 6_3:-92497830 | None:intergenic |
| TTGTGTGGTTGGTCATGATC+AGG | 0.484210 | 6_3:+92499727 | Msa0965200:CDS |
| AGCTTCTCCTTGCAGCAACT+GGG | 0.486330 | 6_3:-92499946 | None:intergenic |
| TCTAGGAGAATGGATATGGC+TGG | 0.492827 | 6_3:+92494314 | Msa0965200:CDS |
| TGGTTTCGTTGACGGTCTGT+TGG | 0.492958 | 6_3:+92496058 | Msa0965200:CDS |
| TGTCAACAGAACAGCAAACT+AGG | 0.493201 | 6_3:-92499226 | None:intergenic |
| CTTCATCCAGAACTGATTCA+GGG | 0.493219 | 6_3:-92499406 | None:intergenic |
| GCGCTTTGTGTGTTAACTGC+TGG | 0.494182 | 6_3:+92495993 | Msa0965200:CDS |
| TTGAATGATAAAATGGATAG+AGG | 0.494833 | 6_3:+92499635 | Msa0965200:CDS |
| TCCTTTGAAAATTCCAGAAG+AGG | 0.495496 | 6_3:-92497123 | None:intergenic |
| ACTTGAAATGTGTTGGGTCA+AGG | 0.503880 | 6_3:-92500853 | None:intergenic |
| TGCACATCATGCTGATGACC+AGG | 0.504382 | 6_3:+92496814 | Msa0965200:CDS |
| TGTCAAGTTCCGGCAAATCA+AGG | 0.508502 | 6_3:+92497084 | Msa0965200:CDS |
| CTTTGATGTGAGGTCAGAAA+TGG | 0.517701 | 6_3:-92499522 | None:intergenic |
| AAGAATCTGTAAATCTATAA+CGG | 0.517946 | 6_3:-92497781 | None:intergenic |
| CGATTTAGTTGATTATGGCA+TGG | 0.518478 | 6_3:+92499667 | Msa0965200:CDS |
| TTGGCGATAATTGTCGATCA+TGG | 0.518584 | 6_3:+92496077 | Msa0965200:CDS |
| AGCTAACCAATTCTATGGTG+TGG | 0.525883 | 6_3:-92494344 | None:intergenic |
| TAACTTCATGCTTTGATGTG+AGG | 0.526260 | 6_3:-92499532 | None:intergenic |
| GGCATATGATTGAATCTGAT+TGG | 0.528374 | 6_3:+92499762 | Msa0965200:CDS |
| AGGTGTAAAAGGTGAGAAAA+CGG | 0.530607 | 6_3:-92494182 | None:intergenic |
| CTTGAAATGTGTTGGGTCAA+GGG | 0.530966 | 6_3:-92500852 | None:intergenic |
| CTCTTGCTTGATGGTGCACG+TGG | 0.531446 | 6_3:+92500680 | Msa0965200:CDS |
| CAGTAGGAATGTGTATGCAT+AGG | 0.532798 | 6_3:-92497063 | None:intergenic |
| GACCGCTTCAGGTCCAAAGT+TGG | 0.534045 | 6_3:+92499497 | Msa0965200:CDS |
| TAGAACTCGATTTCTGCCGC+TGG | 0.534683 | 6_3:+92499161 | Msa0965200:intron |
| AGTAGGAATGTGTATGCATA+GGG | 0.538302 | 6_3:-92497062 | None:intergenic |
| GTCTGTGCCAAACACCAGAT+TGG | 0.538922 | 6_3:+92496779 | Msa0965200:CDS |
| CGGGCAATTCGCTTCAGCCG+GGG | 0.540803 | 6_3:+92499570 | Msa0965200:CDS |
| ATGTTGGTGATGACAGGAAT+AGG | 0.542172 | 6_3:-92494094 | None:intergenic |
| CAGCATGATGTATTAGGCTA+TGG | 0.543182 | 6_3:-92497584 | None:intergenic |
| CACACAAAGCGCTATACTGT+CGG | 0.544499 | 6_3:-92495982 | None:intergenic |
| AGAGTGATGTTGGTGATGAC+AGG | 0.545772 | 6_3:-92494100 | None:intergenic |
| CCGAAAATTCCACTTGGAGG+AGG | 0.546194 | 6_3:+92500711 | Msa0965200:CDS |
| TTCAAAGGAAGACATGTACA+AGG | 0.549089 | 6_3:+92497137 | Msa0965200:CDS |
| AAAATCAAATTCAAATCACT+TGG | 0.549617 | 6_3:+92499346 | Msa0965200:CDS |
| CCAGAAGAGGCCGCACAAGA+AGG | 0.550475 | 6_3:-92497110 | None:intergenic |
| AACTTTGGACCTGAAGCGGT+CGG | 0.551677 | 6_3:-92499495 | None:intergenic |
| GTGTTTGCAGAGAGTGATGT+TGG | 0.552219 | 6_3:-92494110 | None:intergenic |
| GCAGTCAATGAGATTAGAAG+AGG | 0.552557 | 6_3:-92501139 | None:intergenic |
| TCCAGGACTCCAGATGGAAG+TGG | 0.552996 | 6_3:+92501097 | Msa0965200:three_prime_UTR |
| ACAAGAATGCTATTGTAGGT+TGG | 0.553354 | 6_3:-92499455 | None:intergenic |
| GGCTTCTGGTGACTGTGGCT+AGG | 0.554711 | 6_3:-92500912 | None:intergenic |
| GACCCTTTAGAACCAGGATC+CGG | 0.556740 | 6_3:-92499197 | None:intergenic |
| AAATGGAAACACGAAGATGA+TGG | 0.559024 | 6_3:+92499853 | Msa0965200:CDS |
| ATGAAGTAACAGCACTGCCC+CGG | 0.559487 | 6_3:-92499587 | None:intergenic |
| CTCCAACTTTGGACCTGAAG+CGG | 0.561562 | 6_3:-92499499 | None:intergenic |
| ACATTCCTACTGTCAAGTTC+CGG | 0.561720 | 6_3:+92497074 | Msa0965200:CDS |
| AAGCCGAAAATTCCACTTGG+AGG | 0.562305 | 6_3:+92500708 | Msa0965200:CDS |
| TACAGTGGAACAGGGTGAAG+TGG | 0.563016 | 6_3:+92494036 | Msa0965200:CDS |
| CACAGACATCATGAAAGACT+TGG | 0.563529 | 6_3:-92496763 | None:intergenic |
| GTCAATACAATTGATTACAA+AGG | 0.567176 | 6_3:+92501186 | Msa0965200:three_prime_UTR |
| TCTCGAAATAGTGGTGTGCT+TGG | 0.568705 | 6_3:+92497006 | Msa0965200:CDS |
| CCCACTCTTCGGTACCTCCT+CGG | 0.570491 | 6_3:-92497266 | None:intergenic |
| ACACAAAGCGCTATACTGTC+GGG | 0.571073 | 6_3:-92495981 | None:intergenic |
| TTGCTGTGAATAAGAAGAAG+AGG | 0.572179 | 6_3:-92494255 | None:intergenic |
| GGGAAAATCTGGGAGGTGAA+AGG | 0.573824 | 6_3:-92497042 | None:intergenic |
| CCTGTTCTGATCAATCAACA+TGG | 0.574410 | 6_3:+92499971 | Msa0965200:CDS |
| ATTTCTTTAGTGATCATCGT+GGG | 0.578132 | 6_3:+92501019 | Msa0965200:three_prime_UTR |
| ACTGCTGGTGCTAATTCTGT+TGG | 0.579854 | 6_3:+92496023 | Msa0965200:CDS |
| TTTAGTCAAGCTGGTAAAAG+GGG | 0.583206 | 6_3:+92500988 | Msa0965200:three_prime_UTR |
| TCTGTTGGCACTGACAGTAG+TGG | 0.585532 | 6_3:+92496038 | Msa0965200:CDS |
| TCAGCTTTGGGAGTCTCTGG+TGG | 0.585701 | 6_3:+92495957 | Msa0965200:intron |
| GCCGAGGAGGTACCGAAGAG+TGG | 0.590730 | 6_3:+92497265 | Msa0965200:CDS |
| ACTGCTGGATGGAAAACTGC+TGG | 0.593742 | 6_3:+92496008 | Msa0965200:CDS |
| CACTAAATATCATGATTGCA+AGG | 0.594337 | 6_3:+92500777 | Msa0965200:three_prime_UTR |
| ATTTGCCGGAACTTGACAGT+AGG | 0.595231 | 6_3:-92497079 | None:intergenic |
| AACGCGGTTACGAACAATGT+TGG | 0.598056 | 6_3:-92496126 | None:intergenic |
| GTATTGTGTTGCCGATGAGT+TGG | 0.599404 | 6_3:+92499304 | Msa0965200:CDS |
| GATTATGGCATGGATTTGAG+TGG | 0.600876 | 6_3:+92499677 | Msa0965200:CDS |
| TGGATCGATTCATGCTAACA+TGG | 0.602890 | 6_3:+92499609 | Msa0965200:CDS |
| GTTATGGCTTCTGGTGACTG+TGG | 0.602926 | 6_3:-92500917 | None:intergenic |
| TCTTCATCCAGGACTCCAGA+TGG | 0.609712 | 6_3:+92501091 | Msa0965200:three_prime_UTR |
| AAGTCTTAAAATAAATAACT+CGG | 0.610951 | 6_3:-92496983 | None:intergenic |
| CTGTGAATAAGAAGAAGAGG+AGG | 0.612612 | 6_3:-92494252 | None:intergenic |
| TAGAACCAGGATCCGGACAA+AGG | 0.612693 | 6_3:-92499190 | None:intergenic |
| ACACTGGCATAGTGCAGACA+TGG | 0.614739 | 6_3:-92499887 | None:intergenic |
| TATAAGCCGAAAATTCCACT+TGG | 0.618772 | 6_3:+92500705 | Msa0965200:CDS |
| CTGAAGCGAATTGCCCGAAG+TGG | 0.618867 | 6_3:-92499564 | None:intergenic |
| CTGACCTAGACACTTCATGC+AGG | 0.621380 | 6_3:+92496243 | Msa0965200:intron |
| AATCAATCCCAGTTGCTGCA+AGG | 0.623665 | 6_3:+92499939 | Msa0965200:CDS |
| GAGCTATGACCTCCTCCAAG+TGG | 0.626735 | 6_3:-92500720 | None:intergenic |
| TTTGTGTGTTAACTGCTGGA+TGG | 0.627514 | 6_3:+92495997 | Msa0965200:CDS |
| TCACACGGAATAGGATACGA+AGG | 0.630977 | 6_3:+92497319 | Msa0965200:CDS |
| CATAAGTACCTGCAAGACCA+AGG | 0.631073 | 6_3:-92497847 | None:intergenic |
| ACTCTGGACCCTTTAGAACC+AGG | 0.631377 | 6_3:-92499203 | None:intergenic |
| CCGAGGAGGTACCGAAGAGT+GGG | 0.632247 | 6_3:+92497266 | Msa0965200:CDS |
| GTGCCATAACCTCTTTCAGT+CGG | 0.638556 | 6_3:-92494067 | None:intergenic |
| CATGGTGATGAAACAGAGGA+AGG | 0.639486 | 6_3:-92494212 | None:intergenic |
| CTGAAAGAGGTTATGGCACG+AGG | 0.643350 | 6_3:+92494071 | Msa0965200:CDS |
| TTATCTTCACAGATATGCCG+AGG | 0.643407 | 6_3:+92497249 | Msa0965200:intron |
| ATGATCAGGTTCTTGAAGTG+CGG | 0.645433 | 6_3:+92499741 | Msa0965200:CDS |
| ATCAAAACCAGTTATTCACA+CGG | 0.663399 | 6_3:+92497304 | Msa0965200:CDS |
| TAGCCTAATACATCATGCTG+TGG | 0.665156 | 6_3:+92497587 | Msa0965200:CDS |
| GAAATGTGTTGGGTCAAGGG+TGG | 0.666291 | 6_3:-92500849 | None:intergenic |
| GAACACACTGTGAAGCAACA+TGG | 0.669432 | 6_3:-92494230 | None:intergenic |
| GGAAGTGGATGCTCAAATTG+TGG | 0.671678 | 6_3:+92501112 | Msa0965200:three_prime_UTR |
| GCAACATGGTGATGAAACAG+AGG | 0.672809 | 6_3:-92494216 | None:intergenic |
| ATCAAGGCATCCTTCTTGTG+CGG | 0.673151 | 6_3:+92497100 | Msa0965200:CDS |
| TAGAACATGAGCTTATTAGA+CGG | 0.673295 | 6_3:+92500947 | Msa0965200:three_prime_UTR |
| TGTATGCATAGGGAAAATCT+GGG | 0.676324 | 6_3:-92497052 | None:intergenic |
| CACACGGAATAGGATACGAA+GGG | 0.678715 | 6_3:+92497320 | Msa0965200:CDS |
| CGGACAAAGGTAACAACCAG+CGG | 0.685318 | 6_3:-92499177 | None:intergenic |
| GATCACTAAAGAAATCTCGA+TGG | 0.689060 | 6_3:-92501011 | None:intergenic |
| TAACAAAGTACAGTGGAACA+GGG | 0.701130 | 6_3:+92494028 | Msa0965200:CDS |
| TGTTTGGTAACAAAGTACAG+TGG | 0.704782 | 6_3:+92494021 | Msa0965200:CDS |
| GATTTCTTTAGTGATCATCG+TGG | 0.705115 | 6_3:+92501018 | Msa0965200:three_prime_UTR |
| ACCCACCCATTTGAGAAACG+CGG | 0.710609 | 6_3:-92496142 | None:intergenic |
| TCTTCACAGATATGCCGAGG+AGG | 0.719122 | 6_3:+92497252 | Msa0965200:intron |
| ACGTGCAGAGAGTAAAGACG+AGG | 0.743127 | 6_3:+92496103 | Msa0965200:CDS |
| ATGCATAGGGAAAATCTGGG+AGG | 0.764660 | 6_3:-92497049 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAAATTTAATCTTTTA+TGG | + | chr6_3:92494402-92494421 | Msa0965200:intron | 10.0% |
| !!! | AGAAAAATTTAATCTTTTAT+GGG | + | chr6_3:92494403-92494422 | Msa0965200:intron | 10.0% |
| !! | AGAAAAATTTAATCTTTATT+GGG | + | chr6_3:92495025-92495044 | Msa0965200:intron | 10.0% |
| !!! | TCTTATTTTTTTGTTTTTTA+AGG | - | chr6_3:92498753-92498772 | None:intergenic | 10.0% |
| !! | AAAAAACAAAAAAATAAGAT+TGG | + | chr6_3:92498754-92498773 | Msa0965200:intron | 10.0% |
| !! | CAGAAAAATTTAATCTTTAT+TGG | + | chr6_3:92495024-92495043 | Msa0965200:intron | 15.0% |
| !! | TAAGATATTGATATAACAAA+AGG | + | chr6_3:92495244-92495263 | Msa0965200:intron | 15.0% |
| !! | AAGTCTTAAAATAAATAACT+CGG | - | chr6_3:92496986-92497005 | None:intergenic | 15.0% |
| !!! | TTTTCTGGTTTTAATAATAT+GGG | + | chr6_3:92497440-92497459 | Msa0965200:intron | 15.0% |
| !! | AATTGTAAAAGTTATAATGA+AGG | - | chr6_3:92498425-92498444 | None:intergenic | 15.0% |
| !!! | ATCCTCTTTTTTTTTTTTTT+TGG | - | chr6_3:92498685-92498704 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTTTTTTAAGGTT+GGG | - | chr6_3:92498748-92498767 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGTTTTTTAAGGT+TGG | - | chr6_3:92498749-92498768 | None:intergenic | 15.0% |
| !!! | TCCACTTTTTTAATTATTAT+CGG | + | chr6_3:92499039-92499058 | Msa0965200:intron | 15.0% |
| !! | AGTTAATTATCAAGAAATAT+CGG | - | chr6_3:92500125-92500144 | None:intergenic | 15.0% |
| !! | AATATTTAAGAAAATTGAAG+TGG | - | chr6_3:92500235-92500254 | None:intergenic | 15.0% |
| !! | TTAACTCCAATAATTATTAT+TGG | + | chr6_3:92500460-92500479 | Msa0965200:intron | 15.0% |
| !! | TTTCTTAGTAAAATATGATT+TGG | + | chr6_3:92501164-92501183 | Msa0965200:three_prime_UTR | 15.0% |
| !!! | TGTTTTGCTATTTTAAATTT+TGG | - | chr6_3:92501263-92501282 | None:intergenic | 15.0% |
| !!! | AAAGTTTGAAACTTTTTGAT+GGG | - | chr6_3:92494160-92494179 | None:intergenic | 20.0% |
| !!! | AATATAGACAAGTTTTTTCT+AGG | + | chr6_3:92494297-92494316 | Msa0965200:CDS | 20.0% |
| !!! | ATTTTGAAAAAGTGATTTGA+AGG | + | chr6_3:92494753-92494772 | Msa0965200:intron | 20.0% |
| !!! | TATATAGATTTTGACATGTT+TGG | - | chr6_3:92494937-92494956 | None:intergenic | 20.0% |
| !!! | GTTTTGTTATTTGTACAATT+TGG | + | chr6_3:92495050-92495069 | Msa0965200:intron | 20.0% |
| !! | CTTATAACATTAAGTATTTG+TGG | + | chr6_3:92495220-92495239 | Msa0965200:intron | 20.0% |
| !! | TGCAAAATAGTTTATGAATA+AGG | + | chr6_3:92495786-92495805 | Msa0965200:intron | 20.0% |
| !! | TGTCGTGTTAATAAAATATT+AGG | + | chr6_3:92496365-92496384 | Msa0965200:intron | 20.0% |
| !! | TTCATTTGTAATTGCTAATA+AGG | + | chr6_3:92496441-92496460 | Msa0965200:intron | 20.0% |
| !!! | AACGATATAAATAGTGTTTT+TGG | + | chr6_3:92496540-92496559 | Msa0965200:intron | 20.0% |
| !!! | CTTTTCTGGTTTTAATAATA+TGG | + | chr6_3:92497439-92497458 | Msa0965200:intron | 20.0% |
| !! | ACATAAAGTAGAATTCAAAT+AGG | - | chr6_3:92497664-92497683 | None:intergenic | 20.0% |
| !! | GTTTATATAATTGCATTCTA+TGG | + | chr6_3:92497703-92497722 | Msa0965200:intron | 20.0% |
| !! | AAGAATCTGTAAATCTATAA+CGG | - | chr6_3:92497784-92497803 | None:intergenic | 20.0% |
| !! | CAAATTGAAAAACTAAAGTA+CGG | + | chr6_3:92498201-92498220 | Msa0965200:intron | 20.0% |
| !! | AAATTGAAAAACTAAAGTAC+GGG | + | chr6_3:92498202-92498221 | Msa0965200:intron | 20.0% |
| !!! | TTTTTTTTTTGGAGAAAATG+AGG | - | chr6_3:92498674-92498693 | None:intergenic | 20.0% |
| !! | CTCCAAAAAAAAAAAAAAAG+AGG | + | chr6_3:92498680-92498699 | Msa0965200:intron | 20.0% |
| !!! | TGAAATTGTATGATAATGTT+AGG | - | chr6_3:92498918-92498937 | None:intergenic | 20.0% |
| !! | AAAATCAAATTCAAATCACT+TGG | + | chr6_3:92499346-92499365 | Msa0965200:CDS | 20.0% |
| !! | AAAATTGTGTTATGATTACA+TGG | - | chr6_3:92500403-92500422 | None:intergenic | 20.0% |
| !! | TAGACACCAATAATAATTAT+TGG | - | chr6_3:92500469-92500488 | None:intergenic | 20.0% |
| !! | TAAGCATTAAATTATTAGAG+AGG | - | chr6_3:92500562-92500581 | None:intergenic | 20.0% |
| !!! | TAAATTTTCTCACTTCAAAT+TGG | - | chr6_3:92500823-92500842 | None:intergenic | 20.0% |
| !!! | GAAAGTTTGAAACTTTTTGA+TGG | - | chr6_3:92494161-92494180 | None:intergenic | 25.0% |
| ! | AAAAAAGCTAACCAATTCTA+TGG | - | chr6_3:92494352-92494371 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTTTGTGTGATT+TGG | + | chr6_3:92494428-92494447 | Msa0965200:intron | 25.0% |
| ! | AACTACACATACAACAAAAA+GGG | - | chr6_3:92494460-92494479 | None:intergenic | 25.0% |
| ! | AAACTACACATACAACAAAA+AGG | - | chr6_3:92494461-92494480 | None:intergenic | 25.0% |
| ! | AAGTTAGAATCAAATCTTAG+AGG | + | chr6_3:92494886-92494905 | Msa0965200:intron | 25.0% |
| !! | AGATTAAATTTTTCTGTGTG+AGG | - | chr6_3:92495020-92495039 | None:intergenic | 25.0% |
| ! | AGCTACACATATAACAAAAA+GGG | - | chr6_3:92495082-92495101 | None:intergenic | 25.0% |
| ! | AAGCTACACATATAACAAAA+AGG | - | chr6_3:92495083-92495102 | None:intergenic | 25.0% |
| ! | CATTTGGAAAAGCTTATTTA+AGG | + | chr6_3:92495163-92495182 | Msa0965200:intron | 25.0% |
| !! | TAATCGAATATTTTGCATAC+TGG | - | chr6_3:92495388-92495407 | None:intergenic | 25.0% |
| !!! | ACATAGCTATAAGTTGTTTT+CGG | + | chr6_3:92495407-92495426 | Msa0965200:intron | 25.0% |
| ! | GTTTATTAGAGCTTATCTAT+TGG | - | chr6_3:92495737-92495756 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTTTTTCTCTC+TGG | + | chr6_3:92495892-92495911 | Msa0965200:intron | 25.0% |
| ! | ACAGAAAACATGAAAGTAAA+CGG | + | chr6_3:92496665-92496684 | Msa0965200:intron | 25.0% |
| !!! | ATTGTGGATTTTAACTTCTT+TGG | + | chr6_3:92496730-92496749 | Msa0965200:intron | 25.0% |
| !!! | TTTTAACTTCTTTGGACTTT+AGG | + | chr6_3:92496738-92496757 | Msa0965200:intron | 25.0% |
| ! | AGTCTCGTTTGAAAATAATA+TGG | - | chr6_3:92496881-92496900 | None:intergenic | 25.0% |
| ! | AAACGAGACTAAAATAAGAT+TGG | + | chr6_3:92496891-92496910 | Msa0965200:intron | 25.0% |
| !! | GGAGAAAATTGAATTTTTGA+AGG | + | chr6_3:92496912-92496931 | Msa0965200:intron | 25.0% |
| ! | TAAACATTCCAATAAGAGAT+GGG | - | chr6_3:92497205-92497224 | None:intergenic | 25.0% |
| !!! | ATAACTGGTTTTGATTTGTT+GGG | - | chr6_3:92497299-92497318 | None:intergenic | 25.0% |
| !!! | AATAACTGGTTTTGATTTGT+TGG | - | chr6_3:92497300-92497319 | None:intergenic | 25.0% |
| ! | TTAAAACCAGAAAAGAATGT+TGG | - | chr6_3:92497434-92497453 | None:intergenic | 25.0% |
| ! | TTAATAATATGGGTGAGTAA+TGG | + | chr6_3:92497450-92497469 | Msa0965200:intron | 25.0% |
| ! | AAACCATCATTTGAATAACT+CGG | - | chr6_3:92497478-92497497 | None:intergenic | 25.0% |
| ! | TTTCTCAAAAAACAAAGCTA+CGG | + | chr6_3:92498068-92498087 | Msa0965200:intron | 25.0% |
| !!! | TTAGCGTCGTAATTTTTTTT+GGG | - | chr6_3:92498175-92498194 | None:intergenic | 25.0% |
| !!! | TTTAGCGTCGTAATTTTTTT+TGG | - | chr6_3:92498176-92498195 | None:intergenic | 25.0% |
| !!! | CGTACTTTAGTTTTTCAATT+TGG | - | chr6_3:92498203-92498222 | None:intergenic | 25.0% |
| ! | CTTAATATCTATGCATGAAT+AGG | + | chr6_3:92498231-92498250 | Msa0965200:intron | 25.0% |
| ! | TAAATAGATTTACCTTGCAT+GGG | - | chr6_3:92498878-92498897 | None:intergenic | 25.0% |
| ! | GCCGATAATAATTAAAAAAG+TGG | - | chr6_3:92499043-92499062 | None:intergenic | 25.0% |
| ! | ATAGTTAAAAACACTGACAT+TGG | - | chr6_3:92499087-92499106 | None:intergenic | 25.0% |
| !! | TATAATCTTTTCCAACTCAT+CGG | - | chr6_3:92499318-92499337 | None:intergenic | 25.0% |
| ! | ATGGAAGTTGAATGATAAAA+TGG | + | chr6_3:92499628-92499647 | Msa0965200:CDS | 25.0% |
| ! | TTGAATGATAAAATGGATAG+AGG | + | chr6_3:92499635-92499654 | Msa0965200:CDS | 25.0% |
| !!! | GATTGATTTTAACAAAACGA+GGG | - | chr6_3:92499927-92499946 | None:intergenic | 25.0% |
| !! | AATTGTCCTATTTTATCTGT+AGG | + | chr6_3:92500064-92500083 | Msa0965200:intron | 25.0% |
| ! | CTTATTCCTACAGATAAAAT+AGG | - | chr6_3:92500073-92500092 | None:intergenic | 25.0% |
| ! | GTCAATACAATTGATTACAA+AGG | + | chr6_3:92501186-92501205 | Msa0965200:three_prime_UTR | 25.0% |
| !!! | GAAACTTTTTGATGGGTTTT+TGG | - | chr6_3:92494153-92494172 | None:intergenic | 30.0% |
| !!! | ACAAGTTTTTTCTAGGAGAA+TGG | + | chr6_3:92494304-92494323 | Msa0965200:CDS | 30.0% |
| !! | TTTTTCTAGGAGAATGGATA+TGG | + | chr6_3:92494310-92494329 | Msa0965200:CDS | 30.0% |
| ! | GTAGTTTTTGTTAGAATCCA+AGG | + | chr6_3:92494474-92494493 | Msa0965200:intron | 30.0% |
| !! | CATCATATTGACTTTAACCT+TGG | - | chr6_3:92494494-92494513 | None:intergenic | 30.0% |
| CAAGGTTAAAGTCAATATGA+TGG | + | chr6_3:92494492-92494511 | Msa0965200:intron | 30.0% | |
| AAGAACAATGTGATGGTAAA+TGG | + | chr6_3:92494624-92494643 | Msa0965200:intron | 30.0% | |
| ATGGTAAATGGTTGTATGTT+TGG | + | chr6_3:92494636-92494655 | Msa0965200:intron | 30.0% | |
| !!! | TGTATGTTTGGTTCTACTTT+TGG | + | chr6_3:92494648-92494667 | Msa0965200:intron | 30.0% |
| ! | GAAGACAAAATTGATTCTAG+AGG | + | chr6_3:92494672-92494691 | Msa0965200:intron | 30.0% |
| AAGGTGAAGTGATTTATGTT+TGG | + | chr6_3:92494772-92494791 | Msa0965200:intron | 30.0% | |
| TCTAACTTGAAGCTAGAAAT+TGG | - | chr6_3:92494874-92494893 | None:intergenic | 30.0% | |
| !! | CATCATATTGACTTTAAGCT+TGG | - | chr6_3:92495116-92495135 | None:intergenic | 30.0% |
| CAAGCTTAAAGTCAATATGA+TGG | + | chr6_3:92495114-92495133 | Msa0965200:intron | 30.0% | |
| ! | TTTTAGCACATTGAGTCATT+TGG | + | chr6_3:92495147-92495166 | Msa0965200:intron | 30.0% |
| !! | GAAACAACTTACTGCTTTTA+TGG | - | chr6_3:92495291-92495310 | None:intergenic | 30.0% |
| !! | AGACTTTTTGAGAGAGTTTA+CGG | - | chr6_3:92495313-92495332 | None:intergenic | 30.0% |
| !! | GAATATTTTGCATACTGGTT+TGG | - | chr6_3:92495383-92495402 | None:intergenic | 30.0% |
| TAATTAAGCGCTTATAGCAT+AGG | + | chr6_3:92495506-92495525 | Msa0965200:intron | 30.0% | |
| !!! | GCTACTTTTATAAGTTATCC+TGG | + | chr6_3:92495612-92495631 | Msa0965200:intron | 30.0% |
| ! | AAACTATTTTGCAAGAAGTC+TGG | - | chr6_3:92495779-92495798 | None:intergenic | 30.0% |
| !! | GTCTAAATTTGGCTGTTTTA+TGG | + | chr6_3:92496163-92496182 | Msa0965200:intron | 30.0% |
| GTGAGATTGTTAATTGTGAT+TGG | + | chr6_3:92496274-92496293 | Msa0965200:intron | 30.0% | |
| ! | CCATTTTCAGTTCAACTTAT+AGG | - | chr6_3:92496643-92496662 | None:intergenic | 30.0% |
| ! | CCTATAAGTTGAACTGAAAA+TGG | + | chr6_3:92496640-92496659 | Msa0965200:intron | 30.0% |
| CAGAAAACATGAAAGTAAAC+GGG | + | chr6_3:92496666-92496685 | Msa0965200:intron | 30.0% | |
| !! | AAAGTATTGCCAATTAAACC+TGG | - | chr6_3:92496835-92496854 | None:intergenic | 30.0% |
| ! | TCATTTCTGAGAAATTATGC+AGG | + | chr6_3:92496960-92496979 | Msa0965200:intron | 30.0% |
| TTAAGACTTTCTCGAAATAG+TGG | + | chr6_3:92496997-92497016 | Msa0965200:CDS | 30.0% | |
| !!! | CATTTTTTCCCATCTCTTAT+TGG | + | chr6_3:92497194-92497213 | Msa0965200:intron | 30.0% |
| GTAAACATTCCAATAAGAGA+TGG | - | chr6_3:92497206-92497225 | None:intergenic | 30.0% | |
| ATCAAAACCAGTTATTCACA+CGG | + | chr6_3:92497304-92497323 | Msa0965200:CDS | 30.0% | |
| AAGTCATTGTTAAGTTCTTC+TGG | + | chr6_3:92497408-92497427 | Msa0965200:intron | 30.0% | |
| ATTCTACTTTATGTTGAGTG+TGG | + | chr6_3:92497670-92497689 | Msa0965200:intron | 30.0% | |
| ATAACCAATATCGTAGAATC+AGG | - | chr6_3:92497743-92497762 | None:intergenic | 30.0% | |
| !!! | TATTGGTTATTTTTGCAGCA+TGG | + | chr6_3:92497753-92497772 | Msa0965200:intron | 30.0% |
| !! | TCTTTGTCCTTCTAAAATTG+AGG | + | chr6_3:92497800-92497819 | Msa0965200:CDS | 30.0% |
| GAGTATGCACATACAAATAA+AGG | - | chr6_3:92497905-92497924 | None:intergenic | 30.0% | |
| TTCTCAAAAAACAAAGCTAC+GGG | + | chr6_3:92498069-92498088 | Msa0965200:intron | 30.0% | |
| AATAGTGATATTGGCACTAT+TGG | - | chr6_3:92498269-92498288 | None:intergenic | 30.0% | |
| ! | TAGTCTTTTTACTGAAGATG+AGG | - | chr6_3:92498297-92498316 | None:intergenic | 30.0% |
| GAAACAATAATGTGGGATAT+TGG | - | chr6_3:92498401-92498420 | None:intergenic | 30.0% | |
| TGAAGGAGAAACAATAATGT+GGG | - | chr6_3:92498408-92498427 | None:intergenic | 30.0% | |
| ATGAAGGAGAAACAATAATG+TGG | - | chr6_3:92498409-92498428 | None:intergenic | 30.0% | |
| ! | ACTAAATCTTCTGCTCTTTT+AGG | + | chr6_3:92498479-92498498 | Msa0965200:intron | 30.0% |
| AACTCAAACTTGAGAGAAAT+TGG | - | chr6_3:92498602-92498621 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTAAGGTTGGGTA+CGG | - | chr6_3:92498743-92498762 | None:intergenic | 30.0% |
| ! | AAAATAAGATTGGTGCTTCA+TGG | + | chr6_3:92498764-92498783 | Msa0965200:intron | 30.0% |
| GTAAATAGATTTACCTTGCA+TGG | - | chr6_3:92498879-92498898 | None:intergenic | 30.0% | |
| ! | CATTGCTTTACCTTTAAAGA+TGG | + | chr6_3:92499247-92499266 | Msa0965200:CDS | 30.0% |
| TCAGCAAATTCCATCTTTAA+AGG | - | chr6_3:92499260-92499279 | None:intergenic | 30.0% | |
| CTTTCCGATTTAGTTGATTA+TGG | + | chr6_3:92499662-92499681 | Msa0965200:CDS | 30.0% | |
| CATGCCATAATCAACTAAAT+CGG | - | chr6_3:92499669-92499688 | None:intergenic | 30.0% | |
| ! | CTCATATTCTGTGAAGTTTT+TGG | - | chr6_3:92499822-92499841 | None:intergenic | 30.0% |
| CAAAAACTTCACAGAATATG+AGG | + | chr6_3:92499820-92499839 | Msa0965200:CDS | 30.0% | |
| !! | GGATTGATTTTAACAAAACG+AGG | - | chr6_3:92499928-92499947 | None:intergenic | 30.0% |
| GAATAAGTTACAGTTGCAAT+TGG | + | chr6_3:92500086-92500105 | Msa0965200:intron | 30.0% | |
| CTTCATCGTATATAAAACCA+AGG | - | chr6_3:92500375-92500394 | None:intergenic | 30.0% | |
| ATTGTGTTATGATTACATGG+AGG | - | chr6_3:92500400-92500419 | None:intergenic | 30.0% | |
| CACTAAATATCATGATTGCA+AGG | + | chr6_3:92500777-92500796 | Msa0965200:three_prime_UTR | 30.0% | |
| ! | TCATGATTGCAAGGATATTT+TGG | + | chr6_3:92500786-92500805 | Msa0965200:three_prime_UTR | 30.0% |
| TAGAACATGAGCTTATTAGA+CGG | + | chr6_3:92500947-92500966 | Msa0965200:three_prime_UTR | 30.0% | |
| ! | TTTTAGTCAAGCTGGTAAAA+GGG | + | chr6_3:92500987-92501006 | Msa0965200:three_prime_UTR | 30.0% |
| ATTTCTTTAGTGATCATCGT+GGG | + | chr6_3:92501019-92501038 | Msa0965200:three_prime_UTR | 30.0% | |
| GATGCTTAACATGATCTATA+AGG | + | chr6_3:92501043-92501062 | Msa0965200:three_prime_UTR | 30.0% | |
| GATCTATAAGGAATGTAGAT+TGG | + | chr6_3:92501055-92501074 | Msa0965200:three_prime_UTR | 30.0% | |
| ! | TGTTTGGTAACAAAGTACAG+TGG | + | chr6_3:92494021-92494040 | Msa0965200:CDS | 35.0% |
| TAACAAAGTACAGTGGAACA+GGG | + | chr6_3:92494028-92494047 | Msa0965200:CDS | 35.0% | |
| !!! | TTTTGATGGGTTTTTGGAGA+AGG | - | chr6_3:92494147-92494166 | None:intergenic | 35.0% |
| AGGTGTAAAAGGTGAGAAAA+CGG | - | chr6_3:92494185-92494204 | None:intergenic | 35.0% | |
| !!! | AAGGTTTTGGAAGGTGTAAA+AGG | - | chr6_3:92494196-92494215 | None:intergenic | 35.0% |
| TTGCTGTGAATAAGAAGAAG+AGG | - | chr6_3:92494258-92494277 | None:intergenic | 35.0% | |
| ACAGCAATGCTCAATTGATA+TGG | + | chr6_3:92494271-92494290 | Msa0965200:CDS | 35.0% | |
| ATCAAACCACACCATAGAAT+TGG | + | chr6_3:92494338-92494357 | Msa0965200:CDS | 35.0% | |
| TTTCCTATCACTCTTGTTCA+TGG | + | chr6_3:92494372-92494391 | Msa0965200:intron | 35.0% | |
| !!! | ATTTTGCTATTTGTGCTGCT+TGG | + | chr6_3:92494560-92494579 | Msa0965200:intron | 35.0% |
| CAAGCTTAAGAACAATGTGA+TGG | + | chr6_3:92494617-92494636 | Msa0965200:intron | 35.0% | |
| AAATCAATTCTTGTCACCAC+CGG | - | chr6_3:92494722-92494741 | None:intergenic | 35.0% | |
| ! | TATACCTCGAGAGTCAATTT+TGG | + | chr6_3:92494953-92494972 | Msa0965200:intron | 35.0% |
| ! | AGCTTATTTAAGGCTCTGTT+TGG | + | chr6_3:92495173-92495192 | Msa0965200:intron | 35.0% |
| !!! | AGTTGCTTTTAGTCTCTGTT+TGG | + | chr6_3:92495473-92495492 | Msa0965200:intron | 35.0% |
| CTTATTTCAATATGCTCTCC+AGG | - | chr6_3:92495633-92495652 | None:intergenic | 35.0% | |
| !! | TGGTCTATAAAGCTTTGGAT+TGG | - | chr6_3:92495759-92495778 | None:intergenic | 35.0% |
| AAGTCTGGTCTATAAAGCTT+TGG | - | chr6_3:92495764-92495783 | None:intergenic | 35.0% | |
| TTCTTTGCATCACTAGCATA+CGG | - | chr6_3:92495868-92495887 | None:intergenic | 35.0% | |
| !! | TCTTGCAATTGACCTTGTTT+TGG | - | chr6_3:92496312-92496331 | None:intergenic | 35.0% |
| GTGTTCTCAGAAAATAAACG+AGG | - | chr6_3:92496391-92496410 | None:intergenic | 35.0% | |
| ATGTAGTGAACAGTTGTGAT+AGG | + | chr6_3:92496477-92496496 | Msa0965200:intron | 35.0% | |
| TGTAGTGAACAGTTGTGATA+GGG | + | chr6_3:92496478-92496497 | Msa0965200:intron | 35.0% | |
| TCGATAAAGTGTGCTAATTG+TGG | + | chr6_3:92496714-92496733 | Msa0965200:intron | 35.0% | |
| TGTATGCATAGGGAAAATCT+GGG | - | chr6_3:92497055-92497074 | None:intergenic | 35.0% | |
| AGTAGGAATGTGTATGCATA+GGG | - | chr6_3:92497065-92497084 | None:intergenic | 35.0% | |
| ! | TCCTTTGAAAATTCCAGAAG+AGG | - | chr6_3:92497126-92497145 | None:intergenic | 35.0% |
| TTCAAAGGAAGACATGTACA+AGG | + | chr6_3:92497137-92497156 | Msa0965200:CDS | 35.0% | |
| TAACCACAGCATGATGTATT+AGG | - | chr6_3:92497593-92497612 | None:intergenic | 35.0% | |
| ! | CACATGTCCTCAATTTTAGA+AGG | - | chr6_3:92497810-92497829 | None:intergenic | 35.0% |
| CCAAGGAAAGAAATTTCATC+AGG | - | chr6_3:92497833-92497852 | None:intergenic | 35.0% | |
| CCTGATGAAATTTCTTTCCT+TGG | + | chr6_3:92497830-92497849 | Msa0965200:CDS | 35.0% | |
| CAAAGACAGAAGCAAATAAG+AGG | + | chr6_3:92497971-92497990 | Msa0965200:intron | 35.0% | |
| GAGGAAGGAAATAGTGATAT+TGG | - | chr6_3:92498278-92498297 | None:intergenic | 35.0% | |
| ! | CTTTTTACTGAAGATGAGGA+AGG | - | chr6_3:92498293-92498312 | None:intergenic | 35.0% |
| GATGAATGGAATCTATCTGA+CGG | - | chr6_3:92498374-92498393 | None:intergenic | 35.0% | |
| ACAATAATGTGGGATATTGG+TGG | - | chr6_3:92498398-92498417 | None:intergenic | 35.0% | |
| CGAGTTCTACAGCATAATTA+TGG | - | chr6_3:92499150-92499169 | None:intergenic | 35.0% | |
| ACAAGAATGCTATTGTAGGT+TGG | - | chr6_3:92499458-92499477 | None:intergenic | 35.0% | |
| CAGTACAAGAATGCTATTGT+AGG | - | chr6_3:92499462-92499481 | None:intergenic | 35.0% | |
| TAACTTCATGCTTTGATGTG+AGG | - | chr6_3:92499535-92499554 | None:intergenic | 35.0% | |
| ! | AGTTAAAAATGCTGCCACTT+CGG | + | chr6_3:92499550-92499569 | Msa0965200:CDS | 35.0% |
| CGATTTAGTTGATTATGGCA+TGG | + | chr6_3:92499667-92499686 | Msa0965200:CDS | 35.0% | |
| GGCATATGATTGAATCTGAT+TGG | + | chr6_3:92499762-92499781 | Msa0965200:CDS | 35.0% | |
| TATGAGGTTATGTCAGCAAA+TGG | + | chr6_3:92499836-92499855 | Msa0965200:CDS | 35.0% | |
| AAATGGAAACACGAAGATGA+TGG | + | chr6_3:92499853-92499872 | Msa0965200:CDS | 35.0% | |
| AGTAAGAGAGGTTAACTTAC+TGG | - | chr6_3:92500013-92500032 | None:intergenic | 35.0% | |
| AATCGCTATGATAGTAAGAG+AGG | - | chr6_3:92500025-92500044 | None:intergenic | 35.0% | |
| !! | CAATCTATGAAGCATTGACA+TGG | - | chr6_3:92500518-92500537 | None:intergenic | 35.0% |
| AGAGGATGTGATCTGATTAT+TGG | - | chr6_3:92500544-92500563 | None:intergenic | 35.0% | |
| TATAAGCCGAAAATTCCACT+TGG | + | chr6_3:92500705-92500724 | Msa0965200:CDS | 35.0% | |
| AGGTCATAGCTCATTCATAT+AGG | + | chr6_3:92500731-92500750 | Msa0965200:CDS | 35.0% | |
| GGTCATAGCTCATTCATATA+GGG | + | chr6_3:92500732-92500751 | Msa0965200:CDS | 35.0% | |
| !! | TGATTGCAAGGATATTTTGG+TGG | + | chr6_3:92500789-92500808 | Msa0965200:three_prime_UTR | 35.0% |
| ! | ACATTTCAAGTCAACCGAAA+AGG | + | chr6_3:92500865-92500884 | Msa0965200:three_prime_UTR | 35.0% |
| ! | CATTTCAAGTCAACCGAAAA+GGG | + | chr6_3:92500866-92500885 | Msa0965200:three_prime_UTR | 35.0% |
| CTAATAAGCTCATGTTCTAC+TGG | - | chr6_3:92500946-92500965 | None:intergenic | 35.0% | |
| ! | CTTTTACCAGCTTGACTAAA+AGG | - | chr6_3:92500988-92501007 | None:intergenic | 35.0% |
| ! | CTTTTAGTCAAGCTGGTAAA+AGG | + | chr6_3:92500986-92501005 | Msa0965200:three_prime_UTR | 35.0% |
| TTTAGTCAAGCTGGTAAAAG+GGG | + | chr6_3:92500988-92501007 | Msa0965200:three_prime_UTR | 35.0% | |
| GATCACTAAAGAAATCTCGA+TGG | - | chr6_3:92501014-92501033 | None:intergenic | 35.0% | |
| GATTTCTTTAGTGATCATCG+TGG | + | chr6_3:92501018-92501037 | Msa0965200:three_prime_UTR | 35.0% | |
| TTTGTTCATGTTCTTCATCC+AGG | + | chr6_3:92501080-92501099 | Msa0965200:three_prime_UTR | 35.0% | |
| GTAACAAAGTACAGTGGAAC+AGG | + | chr6_3:92494027-92494046 | Msa0965200:CDS | 40.0% | |
| ! | GTTTTTGTTCCGACTGAAAG+AGG | + | chr6_3:92494058-92494077 | Msa0965200:CDS | 40.0% |
| !! | ATGTTGGTGATGACAGGAAT+AGG | - | chr6_3:92494097-92494116 | None:intergenic | 40.0% |
| !!! | AAACAGAGGAAGGTTTTGGA+AGG | - | chr6_3:92494205-92494224 | None:intergenic | 40.0% |
| ! | GATGAAACAGAGGAAGGTTT+TGG | - | chr6_3:92494209-92494228 | None:intergenic | 40.0% |
| CTGTGAATAAGAAGAAGAGG+AGG | - | chr6_3:92494255-92494274 | None:intergenic | 40.0% | |
| AGCTAACCAATTCTATGGTG+TGG | - | chr6_3:92494347-92494366 | None:intergenic | 40.0% | |
| TGACCATGAACAAGAGTGAT+AGG | - | chr6_3:92494378-92494397 | None:intergenic | 40.0% | |
| TGTAGAGATGTTCTCGTGTT+TGG | + | chr6_3:92494695-92494714 | Msa0965200:intron | 40.0% | |
| !!! | AATTTTGGCTCCTTCAGAAG+TGG | + | chr6_3:92494968-92494987 | Msa0965200:intron | 40.0% |
| ! | ATGTTTGGTTCCACTTCTGA+AGG | - | chr6_3:92494981-92495000 | None:intergenic | 40.0% |
| ! | TGAACCAAGAAGGGTATGTT+TGG | - | chr6_3:92494996-92495015 | None:intergenic | 40.0% |
| AAGCACTTGTGAGACTGTTT+GGG | - | chr6_3:92495711-92495730 | None:intergenic | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | - | chr6_3:92495712-92495731 | None:intergenic | 40.0% | |
| ! | CTTCTTTTCCTGTCAGCTTT+GGG | + | chr6_3:92495945-92495964 | Msa0965200:intron | 40.0% |
| TTTGTGTGTTAACTGCTGGA+TGG | + | chr6_3:92495997-92496016 | Msa0965200:CDS | 40.0% | |
| TTGGCGATAATTGTCGATCA+TGG | + | chr6_3:92496077-92496096 | Msa0965200:CDS | 40.0% | |
| CAAATGGGTGGGTCTAAATT+TGG | + | chr6_3:92496152-92496171 | Msa0965200:intron | 40.0% | |
| ! | GTTAATTGTGATTGGCCAAG+TGG | + | chr6_3:92496282-92496301 | Msa0965200:intron | 40.0% |
| GAGAAGATGAAAGAGAAGCT+AGG | + | chr6_3:92496500-92496519 | Msa0965200:intron | 40.0% | |
| TTCCCAGCACAAACATCTAA+GGG | - | chr6_3:92496692-92496711 | None:intergenic | 40.0% | |
| ATTCCCAGCACAAACATCTA+AGG | - | chr6_3:92496693-92496712 | None:intergenic | 40.0% | |
| CACAGACATCATGAAAGACT+TGG | - | chr6_3:92496766-92496785 | None:intergenic | 40.0% | |
| CAATAAGCAACACTCCAATC+TGG | - | chr6_3:92496796-92496815 | None:intergenic | 40.0% | |
| TGCTGATGACCAGGTTTAAT+TGG | + | chr6_3:92496823-92496842 | Msa0965200:intron | 40.0% | |
| GTGTATGCATAGGGAAAATC+TGG | - | chr6_3:92497056-92497075 | None:intergenic | 40.0% | |
| CAGTAGGAATGTGTATGCAT+AGG | - | chr6_3:92497066-92497085 | None:intergenic | 40.0% | |
| ACATTCCTACTGTCAAGTTC+CGG | + | chr6_3:92497074-92497093 | Msa0965200:CDS | 40.0% | |
| !!! | GCCTCTTCTGGAATTTTCAA+AGG | + | chr6_3:92497122-92497141 | Msa0965200:CDS | 40.0% |
| AAGGAAGACATGTACAAGGT+TGG | + | chr6_3:92497141-92497160 | Msa0965200:intron | 40.0% | |
| TTATCTTCACAGATATGCCG+AGG | + | chr6_3:92497249-92497268 | Msa0965200:intron | 40.0% | |
| ACCAGTTATTCACACGGAAT+AGG | + | chr6_3:92497310-92497329 | Msa0965200:CDS | 40.0% | |
| TCCTATTCCGTGTGAATAAC+TGG | - | chr6_3:92497314-92497333 | None:intergenic | 40.0% | |
| ! | TTCTGGCCAACATTCTTTTC+TGG | + | chr6_3:92497425-92497444 | Msa0965200:intron | 40.0% |
| GCTCCGAGTTATTCAAATGA+TGG | + | chr6_3:92497472-92497491 | Msa0965200:intron | 40.0% | |
| GACATGCAGAAATCACTCTT+TGG | - | chr6_3:92497533-92497552 | None:intergenic | 40.0% | |
| CAGCATGATGTATTAGGCTA+TGG | - | chr6_3:92497587-92497606 | None:intergenic | 40.0% | |
| TAGCCTAATACATCATGCTG+TGG | + | chr6_3:92497587-92497606 | Msa0965200:CDS | 40.0% | |
| CAATATCGTAGAATCAGGAC+AGG | - | chr6_3:92497738-92497757 | None:intergenic | 40.0% | |
| CTGTCCTGATTCTACGATAT+TGG | + | chr6_3:92497736-92497755 | Msa0965200:intron | 40.0% | |
| !! | ATTTCTTTCCTTGGTCTTGC+AGG | + | chr6_3:92497839-92497858 | Msa0965200:CDS | 40.0% |
| !! | AAAAGACTAGCTTCCATGCT+AGG | + | chr6_3:92498308-92498327 | Msa0965200:intron | 40.0% |
| CTTCTTGTGCTGAGAGAAAT+TGG | - | chr6_3:92498550-92498569 | None:intergenic | 40.0% | |
| TCAGCACAAGAAGAAGAACT+TGG | + | chr6_3:92498557-92498576 | Msa0965200:intron | 40.0% | |
| ! | TTTAAGGTTGGGTACGGTAA+TGG | - | chr6_3:92498737-92498756 | None:intergenic | 40.0% |
| GTCTGAAAGCTACGTAGTAT+CGG | + | chr6_3:92498964-92498983 | Msa0965200:intron | 40.0% | |
| TGTCAACAGAACAGCAAACT+AGG | - | chr6_3:92499229-92499248 | None:intergenic | 40.0% | |
| !! | TGCATCAGATGTCCACTTTT+TGG | + | chr6_3:92499376-92499395 | Msa0965200:CDS | 40.0% |
| ! | CTTCATCCAGAACTGATTCA+GGG | - | chr6_3:92499409-92499428 | None:intergenic | 40.0% |
| CTTTGATGTGAGGTCAGAAA+TGG | - | chr6_3:92499525-92499544 | None:intergenic | 40.0% | |
| ! | GTTAAAAATGCTGCCACTTC+GGG | + | chr6_3:92499551-92499570 | Msa0965200:CDS | 40.0% |
| ! | TGGATCGATTCATGCTAACA+TGG | + | chr6_3:92499609-92499628 | Msa0965200:CDS | 40.0% |
| GATTATGGCATGGATTTGAG+TGG | + | chr6_3:92499677-92499696 | Msa0965200:CDS | 40.0% | |
| ATGATCAGGTTCTTGAAGTG+CGG | + | chr6_3:92499741-92499760 | Msa0965200:CDS | 40.0% | |
| TGCCAGTGTATCAGCAAAAA+AGG | + | chr6_3:92499901-92499920 | Msa0965200:CDS | 40.0% | |
| ! | CCATGTTGATTGATCAGAAC+AGG | - | chr6_3:92499974-92499993 | None:intergenic | 40.0% |
| CCTGTTCTGATCAATCAACA+TGG | + | chr6_3:92499971-92499990 | Msa0965200:CDS | 40.0% | |
| ! | AGGATGAAGTTCTAGCTAGA+GGG | - | chr6_3:92500355-92500374 | None:intergenic | 40.0% |
| ! | AAGGATGAAGTTCTAGCTAG+AGG | - | chr6_3:92500356-92500375 | None:intergenic | 40.0% |
| TCTAGCTAGAACTTCATCCT+TGG | + | chr6_3:92500355-92500374 | Msa0965200:intron | 40.0% | |
| TGAGTTCAGCACTTGACATT+TGG | + | chr6_3:92500601-92500620 | Msa0965200:intron | 40.0% | |
| CTTGAAATGTGTTGGGTCAA+GGG | - | chr6_3:92500855-92500874 | None:intergenic | 40.0% | |
| ACTTGAAATGTGTTGGGTCA+AGG | - | chr6_3:92500856-92500875 | None:intergenic | 40.0% | |
| !! | CGGTTGACTTGAAATGTGTT+GGG | - | chr6_3:92500862-92500881 | None:intergenic | 40.0% |
| !! | TCGGTTGACTTGAAATGTGT+TGG | - | chr6_3:92500863-92500882 | None:intergenic | 40.0% |
| !! | ATTTTTCGACGTGCCCTTTT+CGG | - | chr6_3:92500882-92500901 | None:intergenic | 40.0% |
| CATGTTCTACTGGCAAGTTA+TGG | - | chr6_3:92500936-92500955 | None:intergenic | 40.0% | |
| ! | ATAGAGCCTTTTAGTCAAGC+TGG | + | chr6_3:92500979-92500998 | Msa0965200:three_prime_UTR | 40.0% |
| GCAGTCAATGAGATTAGAAG+AGG | - | chr6_3:92501142-92501161 | None:intergenic | 40.0% | |
| GTTCCGACTGAAAGAGGTTA+TGG | + | chr6_3:92494064-92494083 | Msa0965200:CDS | 45.0% | |
| GTGCCATAACCTCTTTCAGT+CGG | - | chr6_3:92494070-92494089 | None:intergenic | 45.0% | |
| !! | AGAGTGATGTTGGTGATGAC+AGG | - | chr6_3:92494103-92494122 | None:intergenic | 45.0% |
| GTGTTTGCAGAGAGTGATGT+TGG | - | chr6_3:92494113-92494132 | None:intergenic | 45.0% | |
| ! | CATGGTGATGAAACAGAGGA+AGG | - | chr6_3:92494215-92494234 | None:intergenic | 45.0% |
| ! | GCAACATGGTGATGAAACAG+AGG | - | chr6_3:92494219-92494238 | None:intergenic | 45.0% |
| GAACACACTGTGAAGCAACA+TGG | - | chr6_3:92494233-92494252 | None:intergenic | 45.0% | |
| TCTAGGAGAATGGATATGGC+TGG | + | chr6_3:92494314-92494333 | Msa0965200:CDS | 45.0% | |
| AGATGTTCTCGTGTTTGGTC+CGG | + | chr6_3:92494700-92494719 | Msa0965200:intron | 45.0% | |
| GGAACCAAACATACCCTTCT+TGG | + | chr6_3:92494989-92495008 | Msa0965200:intron | 45.0% | |
| GTGTGAGGATGAACCAAGAA+GGG | - | chr6_3:92495005-92495024 | None:intergenic | 45.0% | |
| TGTGTGAGGATGAACCAAGA+AGG | - | chr6_3:92495006-92495025 | None:intergenic | 45.0% | |
| ! | GCTTCTTTTCCTGTCAGCTT+TGG | + | chr6_3:92495944-92495963 | Msa0965200:intron | 45.0% |
| ! | ACACAAAGCGCTATACTGTC+GGG | - | chr6_3:92495984-92496003 | None:intergenic | 45.0% |
| ! | CACACAAAGCGCTATACTGT+CGG | - | chr6_3:92495985-92496004 | None:intergenic | 45.0% |
| ! | ACTGCTGGTGCTAATTCTGT+TGG | + | chr6_3:92496023-92496042 | Msa0965200:CDS | 45.0% |
| GACAGTAGTGGTTTCGTTGA+CGG | + | chr6_3:92496050-92496069 | Msa0965200:CDS | 45.0% | |
| AACGCGGTTACGAACAATGT+TGG | - | chr6_3:92496129-92496148 | None:intergenic | 45.0% | |
| TCGTAACCGCGTTTCTCAAA+TGG | + | chr6_3:92496136-92496155 | Msa0965200:CDS | 45.0% | |
| CGTAACCGCGTTTCTCAAAT+GGG | + | chr6_3:92496137-92496156 | Msa0965200:CDS | 45.0% | |
| ! | GATTCCTGCATGAAGTGTCT+AGG | - | chr6_3:92496250-92496269 | None:intergenic | 45.0% |
| CAACACTCCAATCTGGTGTT+TGG | - | chr6_3:92496789-92496808 | None:intergenic | 45.0% | |
| TCTCGAAATAGTGGTGTGCT+TGG | + | chr6_3:92497006-92497025 | Msa0965200:CDS | 45.0% | |
| ATGCATAGGGAAAATCTGGG+AGG | - | chr6_3:92497052-92497071 | None:intergenic | 45.0% | |
| ATTTGCCGGAACTTGACAGT+AGG | - | chr6_3:92497082-92497101 | None:intergenic | 45.0% | |
| TGTCAAGTTCCGGCAAATCA+AGG | + | chr6_3:92497084-92497103 | Msa0965200:CDS | 45.0% | |
| !! | AGAAGGATGCCTTGATTTGC+CGG | - | chr6_3:92497096-92497115 | None:intergenic | 45.0% |
| ! | ATCAAGGCATCCTTCTTGTG+CGG | + | chr6_3:92497100-92497119 | Msa0965200:CDS | 45.0% |
| TCACACGGAATAGGATACGA+AGG | + | chr6_3:92497319-92497338 | Msa0965200:CDS | 45.0% | |
| CACACGGAATAGGATACGAA+GGG | + | chr6_3:92497320-92497339 | Msa0965200:CDS | 45.0% | |
| CATAAGTACCTGCAAGACCA+AGG | - | chr6_3:92497850-92497869 | None:intergenic | 45.0% | |
| ! | TGCAACACAGGAAAGTACGT+AGG | - | chr6_3:92498024-92498043 | None:intergenic | 45.0% |
| ACGTACTTTCCTGTGTTGCA+CGG | + | chr6_3:92498024-92498043 | Msa0965200:intron | 45.0% | |
| AACAAAGCTACGGGTACGTT+AGG | + | chr6_3:92498078-92498097 | Msa0965200:intron | 45.0% | |
| TTCTCTGGATGAACCTAGCA+TGG | - | chr6_3:92498324-92498343 | None:intergenic | 45.0% | |
| !! | TGAGGTTGCTAGTCTTTCTC+TGG | - | chr6_3:92498339-92498358 | None:intergenic | 45.0% |
| GGGATATTGGTGGAGATGAA+TGG | - | chr6_3:92498388-92498407 | None:intergenic | 45.0% | |
| CACGGGTACGTTTAGCAAAA+TGG | + | chr6_3:92498827-92498846 | Msa0965200:intron | 45.0% | |
| !! | GGAAAGTACCACTGAAGCAT+GGG | - | chr6_3:92498857-92498876 | None:intergenic | 45.0% |
| ACGGACAGGCTTTCGATATA+AGG | - | chr6_3:92498992-92499011 | None:intergenic | 45.0% | |
| AGAACAGCAAACTAGGACTC+TGG | - | chr6_3:92499222-92499241 | None:intergenic | 45.0% | |
| GTATTGTGTTGCCGATGAGT+TGG | + | chr6_3:92499304-92499323 | Msa0965200:CDS | 45.0% | |
| CAGGGTTCACATCCAAAAAG+TGG | - | chr6_3:92499391-92499410 | None:intergenic | 45.0% | |
| TGTGAACCCTGAATCAGTTC+TGG | + | chr6_3:92499400-92499419 | Msa0965200:CDS | 45.0% | |
| ! | GCTTCATCCAGAACTGATTC+AGG | - | chr6_3:92499410-92499429 | None:intergenic | 45.0% |
| GTCAGAAATGGCTCCAACTT+TGG | - | chr6_3:92499513-92499532 | None:intergenic | 45.0% | |
| ! | CTTTTGTTGCTCGTCTTGTG+TGG | + | chr6_3:92499712-92499731 | Msa0965200:CDS | 45.0% |
| ! | TTGTGTGGTTGGTCATGATC+AGG | + | chr6_3:92499727-92499746 | Msa0965200:CDS | 45.0% |
| !!! | GGCCTTTTTTGCTGATACAC+TGG | - | chr6_3:92499906-92499925 | None:intergenic | 45.0% |
| AATCAATCCCAGTTGCTGCA+AGG | + | chr6_3:92499939-92499958 | Msa0965200:CDS | 45.0% | |
| ACACTGCCACTACAGAATGA+AGG | + | chr6_3:92500151-92500170 | Msa0965200:intron | 45.0% | |
| GACACTCCTTCATTCTGTAG+TGG | - | chr6_3:92500160-92500179 | None:intergenic | 45.0% | |
| ! | CAAGCATTGCTCTTGCTTGA+TGG | + | chr6_3:92500671-92500690 | Msa0965200:CDS | 45.0% |
| AAGCCGAAAATTCCACTTGG+AGG | + | chr6_3:92500708-92500727 | Msa0965200:CDS | 45.0% | |
| ! | CCTCCTCCAAGTGGAATTTT+CGG | - | chr6_3:92500714-92500733 | None:intergenic | 45.0% |
| TACTGGCAAGTTATGGCTTC+TGG | - | chr6_3:92500929-92500948 | None:intergenic | 45.0% | |
| TTTGAGCATCCACTTCCATC+TGG | - | chr6_3:92501109-92501128 | None:intergenic | 45.0% | |
| GGAAGTGGATGCTCAAATTG+TGG | + | chr6_3:92501112-92501131 | Msa0965200:three_prime_UTR | 45.0% | |
| TACAGTGGAACAGGGTGAAG+TGG | + | chr6_3:92494036-92494055 | Msa0965200:CDS | 50.0% | |
| CTGAAAGAGGTTATGGCACG+AGG | + | chr6_3:92494071-92494090 | Msa0965200:CDS | 50.0% | |
| ! | GGAGCCAAAATTGACTCTCG+AGG | - | chr6_3:92494960-92494979 | None:intergenic | 50.0% |
| GCGCTTTGTGTGTTAACTGC+TGG | + | chr6_3:92495993-92496012 | Msa0965200:CDS | 50.0% | |
| ACTGCTGGATGGAAAACTGC+TGG | + | chr6_3:92496008-92496027 | Msa0965200:CDS | 50.0% | |
| !! | TCTGTTGGCACTGACAGTAG+TGG | + | chr6_3:92496038-92496057 | Msa0965200:CDS | 50.0% |
| TGGTTTCGTTGACGGTCTGT+TGG | + | chr6_3:92496058-92496077 | Msa0965200:CDS | 50.0% | |
| ACGTGCAGAGAGTAAAGACG+AGG | + | chr6_3:92496103-92496122 | Msa0965200:CDS | 50.0% | |
| AACCGCGTTTCTCAAATGGG+TGG | + | chr6_3:92496140-92496159 | Msa0965200:intron | 50.0% | |
| ACCGCGTTTCTCAAATGGGT+GGG | + | chr6_3:92496141-92496160 | Msa0965200:intron | 50.0% | |
| ACCCACCCATTTGAGAAACG+CGG | - | chr6_3:92496145-92496164 | None:intergenic | 50.0% | |
| CTGACCTAGACACTTCATGC+AGG | + | chr6_3:92496243-92496262 | Msa0965200:intron | 50.0% | |
| !!! | CCTTGTTTTGGCTTGCCACT+TGG | - | chr6_3:92496300-92496319 | None:intergenic | 50.0% |
| CCAAGTGGCAAGCCAAAACA+AGG | + | chr6_3:92496297-92496316 | Msa0965200:intron | 50.0% | |
| AAGAAGCTGCTCGTGACATG+AGG | + | chr6_3:92496328-92496347 | Msa0965200:intron | 50.0% | |
| GGCCCTTAGATGTTTGTGCT+GGG | + | chr6_3:92496687-92496706 | Msa0965200:intron | 50.0% | |
| GTCTGTGCCAAACACCAGAT+TGG | + | chr6_3:92496779-92496798 | Msa0965200:CDS | 50.0% | |
| TGCACATCATGCTGATGACC+AGG | + | chr6_3:92496814-92496833 | Msa0965200:CDS | 50.0% | |
| GGGAAAATCTGGGAGGTGAA+AGG | - | chr6_3:92497045-92497064 | None:intergenic | 50.0% | |
| TCTTCACAGATATGCCGAGG+AGG | + | chr6_3:92497252-92497271 | Msa0965200:intron | 50.0% | |
| TGGGTCTTCTACCCACTCTT+CGG | - | chr6_3:92497280-92497299 | None:intergenic | 50.0% | |
| CGTACTTTCCTGTGTTGCAC+GGG | + | chr6_3:92498025-92498044 | Msa0965200:intron | 50.0% | |
| TGACGGAGCTGGTATTCTTG+AGG | - | chr6_3:92498357-92498376 | None:intergenic | 50.0% | |
| TGGAATCTATCTGACGGAGC+TGG | - | chr6_3:92498368-92498387 | None:intergenic | 50.0% | |
| !! | TAATGGTGCTGCAGTGGTAC+TGG | - | chr6_3:92498720-92498739 | None:intergenic | 50.0% |
| TTTGCTAAACGTACCCGTGC+CGG | - | chr6_3:92498826-92498845 | None:intergenic | 50.0% | |
| ! | ATGGAGTACCCATGCTTCAG+TGG | + | chr6_3:92498846-92498865 | Msa0965200:intron | 50.0% |
| !! | GGGAAAGTACCACTGAAGCA+TGG | - | chr6_3:92498858-92498877 | None:intergenic | 50.0% |
| CAGTGGTACTTTCCCATGCA+AGG | + | chr6_3:92498863-92498882 | Msa0965200:intron | 50.0% | |
| TGGAAGTGATGTGTGAGCGT+CGG | - | chr6_3:92499023-92499042 | None:intergenic | 50.0% | |
| TAGAACTCGATTTCTGCCGC+TGG | + | chr6_3:92499161-92499180 | Msa0965200:intron | 50.0% | |
| CGGACAAAGGTAACAACCAG+CGG | - | chr6_3:92499180-92499199 | None:intergenic | 50.0% | |
| ! | CGCTGGTTGTTACCTTTGTC+CGG | + | chr6_3:92499178-92499197 | Msa0965200:CDS | 50.0% |
| TGTTACCTTTGTCCGGATCC+TGG | + | chr6_3:92499185-92499204 | Msa0965200:CDS | 50.0% | |
| TAGAACCAGGATCCGGACAA+AGG | - | chr6_3:92499193-92499212 | None:intergenic | 50.0% | |
| !! | TGTCCGGATCCTGGTTCTAA+AGG | + | chr6_3:92499194-92499213 | Msa0965200:CDS | 50.0% |
| !! | GTCCGGATCCTGGTTCTAAA+GGG | + | chr6_3:92499195-92499214 | Msa0965200:CDS | 50.0% |
| !! | GACCCTTTAGAACCAGGATC+CGG | - | chr6_3:92499200-92499219 | None:intergenic | 50.0% |
| !! | ACTCTGGACCCTTTAGAACC+AGG | - | chr6_3:92499206-92499225 | None:intergenic | 50.0% |
| AACTTTGGACCTGAAGCGGT+CGG | - | chr6_3:92499498-92499517 | None:intergenic | 50.0% | |
| CTCCAACTTTGGACCTGAAG+CGG | - | chr6_3:92499502-92499521 | None:intergenic | 50.0% | |
| ATGAAGTAACAGCACTGCCC+CGG | - | chr6_3:92499590-92499609 | None:intergenic | 50.0% | |
| TGTTGCTCGTCTTGTGTGGT+TGG | + | chr6_3:92499716-92499735 | Msa0965200:CDS | 50.0% | |
| ACACTGGCATAGTGCAGACA+TGG | - | chr6_3:92499890-92499909 | None:intergenic | 50.0% | |
| AGCTTCTCCTTGCAGCAACT+GGG | - | chr6_3:92499949-92499968 | None:intergenic | 50.0% | |
| AAGCTTCTCCTTGCAGCAAC+TGG | - | chr6_3:92499950-92499969 | None:intergenic | 50.0% | |
| CCGAAAATTCCACTTGGAGG+AGG | + | chr6_3:92500711-92500730 | Msa0965200:CDS | 50.0% | |
| GAAATGTGTTGGGTCAAGGG+TGG | - | chr6_3:92500852-92500871 | None:intergenic | 50.0% | |
| GTTATGGCTTCTGGTGACTG+TGG | - | chr6_3:92500920-92500939 | None:intergenic | 50.0% | |
| TCTTCATCCAGGACTCCAGA+TGG | + | chr6_3:92501091-92501110 | Msa0965200:three_prime_UTR | 50.0% | |
| TGTTCTCGTGTTTGGTCCGG+TGG | + | chr6_3:92494703-92494722 | Msa0965200:intron | 55.0% | |
| CAGAGACTCCCAAAGCTGAC+AGG | - | chr6_3:92495956-92495975 | None:intergenic | 55.0% | |
| !! | CTGTCAGCTTTGGGAGTCTC+TGG | + | chr6_3:92495954-92495973 | Msa0965200:intron | 55.0% |
| !! | TCAGCTTTGGGAGTCTCTGG+TGG | + | chr6_3:92495957-92495976 | Msa0965200:intron | 55.0% |
| GGGCCCTTAGATGTTTGTGC+TGG | + | chr6_3:92496686-92496705 | Msa0965200:intron | 55.0% | |
| AGTGGTGTGCTTGGACTTGC+AGG | + | chr6_3:92497015-92497034 | Msa0965200:CDS | 55.0% | |
| TTTCCTGTGTTGCACGGGTG+CGG | + | chr6_3:92498030-92498049 | Msa0965200:intron | 55.0% | |
| ! | GTGCTGCAGTGGTACTGGAA+GGG | - | chr6_3:92498715-92498734 | None:intergenic | 55.0% |
| !! | GTACGGTAATGGTGCTGCAG+TGG | - | chr6_3:92498726-92498745 | None:intergenic | 55.0% |
| TTGCTAAACGTACCCGTGCC+GGG | - | chr6_3:92498825-92498844 | None:intergenic | 55.0% | |
| AGCAAGAAACCGACCGCTTC+AGG | + | chr6_3:92499486-92499505 | Msa0965200:CDS | 55.0% | |
| GACCGCTTCAGGTCCAAAGT+TGG | + | chr6_3:92499497-92499516 | Msa0965200:CDS | 55.0% | |
| CTGAAGCGAATTGCCCGAAG+TGG | - | chr6_3:92499567-92499586 | None:intergenic | 55.0% | |
| TTCGGGCAATTCGCTTCAGC+CGG | + | chr6_3:92499568-92499587 | Msa0965200:CDS | 55.0% | |
| ! | GGGGCAGTGCTGTTACTTCA+TGG | + | chr6_3:92499589-92499608 | Msa0965200:CDS | 55.0% |
| !! | CTCTTGCTTGATGGTGCACG+TGG | + | chr6_3:92500680-92500699 | Msa0965200:CDS | 55.0% |
| GAGCTATGACCTCCTCCAAG+TGG | - | chr6_3:92500723-92500742 | None:intergenic | 55.0% | |
| TCCAGGACTCCAGATGGAAG+TGG | + | chr6_3:92501097-92501116 | Msa0965200:three_prime_UTR | 55.0% | |
| ! | TCCACTTCCATCTGGAGTCC+TGG | - | chr6_3:92501101-92501120 | None:intergenic | 55.0% |
| CCAGAAGAGGCCGCACAAGA+AGG | - | chr6_3:92497113-92497132 | None:intergenic | 60.0% | |
| CCTTCTTGTGCGGCCTCTTC+TGG | + | chr6_3:92497110-92497129 | Msa0965200:CDS | 60.0% | |
| CCCACTCTTCGGTACCTCCT+CGG | - | chr6_3:92497269-92497288 | None:intergenic | 60.0% | |
| !! | CCGAGGAGGTACCGAAGAGT+GGG | + | chr6_3:92497266-92497285 | Msa0965200:CDS | 60.0% |
| TTCCTGTGTTGCACGGGTGC+GGG | + | chr6_3:92498031-92498050 | Msa0965200:intron | 60.0% | |
| ! | GGTGCTGCAGTGGTACTGGA+AGG | - | chr6_3:92498716-92498735 | None:intergenic | 60.0% |
| TCGGGCAATTCGCTTCAGCC+GGG | + | chr6_3:92499569-92499588 | Msa0965200:CDS | 60.0% | |
| GGCTTCTGGTGACTGTGGCT+AGG | - | chr6_3:92500915-92500934 | None:intergenic | 60.0% | |
| !! | GCCGAGGAGGTACCGAAGAG+TGG | + | chr6_3:92497265-92497284 | Msa0965200:CDS | 65.0% |
| TACCCGCACCCGTGCAACAC+AGG | - | chr6_3:92498036-92498055 | None:intergenic | 65.0% | |
| GTGTTGCACGGGTGCGGGTA+CGG | + | chr6_3:92498036-92498055 | Msa0965200:intron | 65.0% | |
| TGTTGCACGGGTGCGGGTAC+GGG | + | chr6_3:92498037-92498056 | Msa0965200:intron | 65.0% | |
| ACGGGTGCGGGTACGGGATA+CGG | + | chr6_3:92498043-92498062 | Msa0965200:intron | 65.0% | |
| ACCAGTACCCGCGCAGTACC+CGG | + | chr6_3:92498804-92498823 | Msa0965200:intron | 65.0% | |
| CGGGCAATTCGCTTCAGCCG+GGG | + | chr6_3:92499570-92499589 | Msa0965200:CDS | 65.0% | |
| TACCCGCGCAGTACCCGGCA+CGG | + | chr6_3:92498809-92498828 | Msa0965200:intron | 70.0% | |
| ! | TACCCGTGCCGGGTACTGCG+CGG | - | chr6_3:92498815-92498834 | None:intergenic | 70.0% |
| ! | GCCGGGTACTGCGCGGGTAC+TGG | - | chr6_3:92498808-92498827 | None:intergenic | 75.0% |
| ACCCGCGCAGTACCCGGCAC+GGG | + | chr6_3:92498810-92498829 | Msa0965200:intron | 75.0% | |
| ! | ACCCGTGCCGGGTACTGCGC+GGG | - | chr6_3:92498814-92498833 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 92494020 | 92501302 | 92494020 | ID=Msa0965200;Name=Msa0965200 |
| chr6_3 | mRNA | 92494020 | 92501302 | 92494020 | ID=Msa0965200-mRNA-1;Parent=Msa0965200;Name=Msa0965200-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.66|0.8|1|0.77|0.9|10|550|685 |
| chr6_3 | exon | 92494020 | 92494359 | 92494020 | ID=Msa0965200-mRNA-1:exon:16821;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92495961 | 92496158 | 92495961 | ID=Msa0965200-mRNA-1:exon:16822;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92496252 | 92496273 | 92496252 | ID=Msa0965200-mRNA-1:exon:16823;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92496760 | 92496835 | 92496760 | ID=Msa0965200-mRNA-1:exon:16824;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92496982 | 92497158 | 92496982 | ID=Msa0965200-mRNA-1:exon:16825;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92497261 | 92497363 | 92497261 | ID=Msa0965200-mRNA-1:exon:16826;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92497511 | 92497620 | 92497511 | ID=Msa0965200-mRNA-1:exon:16827;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92497771 | 92497860 | 92497771 | ID=Msa0965200-mRNA-1:exon:16828;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92499164 | 92500012 | 92499164 | ID=Msa0965200-mRNA-1:exon:16829;Parent=Msa0965200-mRNA-1 |
| chr6_3 | exon | 92500660 | 92501302 | 92500660 | ID=Msa0965200-mRNA-1:exon:16830;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92494020 | 92494359 | 92494020 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92495961 | 92496158 | 92495961 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92496252 | 92496273 | 92496252 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92496760 | 92496835 | 92496760 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92496982 | 92497158 | 92496982 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92497261 | 92497363 | 92497261 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92497511 | 92497620 | 92497511 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92497771 | 92497860 | 92497771 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92499164 | 92500012 | 92499164 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | CDS | 92500660 | 92500752 | 92500660 | ID=Msa0965200-mRNA-1:cds;Parent=Msa0965200-mRNA-1 |
| chr6_3 | three_prime_UTR | 92500753 | 92501302 | 92500753 | ID=Msa0965200-mRNA-1:three_prime_utr;Parent=Msa0965200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
