AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0965620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965620 MtrunA17_Chr6g0486521 90.756 119 11 0 5 123 167 285 2.24e-61 202
Msa0965620 MtrunA17_Chr2g0299561 84.874 119 18 0 5 123 167 285 1.16e-57 191
Msa0965620 MtrunA17_Chr6g0486301 85.714 119 17 0 5 123 167 285 1.43e-56 188
Msa0965620 MtrunA17_Chr6g0486271 82.353 119 21 0 5 123 167 285 2.06e-56 186
Msa0965620 MtrunA17_Chr6g0486481 86.555 119 16 0 5 123 167 285 5.18e-56 187
Msa0965620 MtrunA17_Chr6g0486731 85.714 119 17 0 5 123 167 285 1.43e-55 185
Msa0965620 MtrunA17_Chr6g0486451 78.992 119 25 0 5 123 167 285 3.63e-54 171
Msa0965620 MtrunA17_Chr6g0485991 83.193 119 20 0 5 123 167 285 3.27e-53 179
Msa0965620 MtrunA17_Chr6g0486221 79.832 119 24 0 5 123 167 285 6.97e-52 175
Msa0965620 MtrunA17_Chr6g0486311 79.832 119 24 0 5 123 167 285 1.84e-50 171
Msa0965620 MtrunA17_Chr6g0486361 78.151 119 26 0 5 123 167 285 3.44e-49 167
Msa0965620 MtrunA17_Chr4g0041931 66.667 120 39 1 5 123 170 289 6.61e-46 158
Msa0965620 MtrunA17_Chr4g0041231 66.387 119 39 1 5 123 169 286 1.29e-45 157
Msa0965620 MtrunA17_Chr4g0041951 64.706 119 41 1 5 123 225 342 4.46e-45 155
Msa0965620 MtrunA17_Chr4g0041241 65.546 119 40 1 5 123 169 286 5.32e-45 155
Msa0965620 MtrunA17_Chr4g0041441 62.185 119 44 1 5 123 152 269 3.45e-41 144
Msa0965620 MtrunA17_Chr4g0042011 63.025 119 43 1 5 123 171 288 2.38e-37 133
Msa0965620 MtrunA17_Chr4g0041611 54.622 119 53 1 5 123 167 284 2.76e-36 130
Msa0965620 MtrunA17_Chr4g0041941 54.839 124 53 2 2 123 154 276 3.16e-32 119
Msa0965620 MtrunA17_Chr5g0394051 55.357 112 46 3 5 114 169 278 1.49e-28 107
Msa0965620 MtrunA17_Chr4g0041431 58.252 103 42 1 21 123 1 102 2.66e-26 102
Msa0965620 MtrunA17_Chr2g0319821 50.450 111 53 2 5 114 191 300 1.75e-25 99.8
Msa0965620 MtrunA17_Chr2g0319851 50.450 111 53 2 5 114 199 308 3.19e-25 99.0
Msa0965620 MtrunA17_Chr7g0242811 46.281 121 63 2 4 123 189 308 1.77e-24 97.1
Msa0965620 MtrunA17_Chr7g0243021 47.321 112 55 3 5 114 160 269 3.18e-24 94.7
Msa0965620 MtrunA17_Chr7g0242801 49.558 113 53 3 5 114 236 347 4.91e-23 92.8
Msa0965620 MtrunA17_Chr7g0242751 44.144 111 60 2 5 114 193 302 9.39e-21 86.3
Msa0965620 MtrunA17_Chr6g0454971 33.333 123 74 1 1 123 193 307 1.55e-16 74.3
Msa0965620 MtrunA17_Chr6g0455191 33.333 111 74 0 1 111 461 571 1.14e-15 72.0
Msa0965620 MtrunA17_Chr7g0256881 42.000 100 57 1 11 110 165 263 2.65e-15 70.9
Msa0965620 MtrunA17_Chr4g0009041 32.727 110 74 0 1 110 658 767 2.91e-15 70.9
Msa0965620 MtrunA17_Chr4g0010711 34.286 105 69 0 7 111 669 773 3.85e-15 70.5
Msa0965620 MtrunA17_Chr6g0479701 41.121 107 62 1 11 117 180 285 4.06e-15 70.1
Msa0965620 MtrunA17_Chr6g0482441 37.273 110 68 1 6 115 155 263 6.45e-15 69.7
Msa0965620 MtrunA17_Chr6g0480181 37.383 107 66 1 11 117 167 272 9.27e-15 69.3
Msa0965620 MtrunA17_Chr4g0009241 30.909 110 76 0 1 110 692 801 9.33e-15 69.3
Msa0965620 MtrunA17_Chr6g0454831 30.631 111 77 0 1 111 153 263 1.01e-14 69.3
Msa0965620 MtrunA17_Chr6g0455221 31.818 110 75 0 1 110 158 267 1.07e-14 68.9
Msa0965620 MtrunA17_Chr3g0102251 43.750 80 44 1 11 90 173 251 3.06e-14 67.0
Msa0965620 MtrunA17_Chr6g0480421 37.383 107 66 1 11 117 32 137 3.64e-14 67.4
Msa0965620 MtrunA17_Chr1g0172541 33.621 116 75 1 6 121 155 268 3.81e-14 67.4
Msa0965620 MtrunA17_Chr4g0041271 77.143 35 8 0 63 97 1 35 4.93e-14 63.5
Msa0965620 MtrunA17_Chr6g0480911 39.623 106 63 1 11 116 176 280 5.07e-14 67.0
Msa0965620 MtrunA17_Chr6g0478451 39.252 107 63 2 11 117 178 282 6.47e-14 67.0
Msa0965620 MtrunA17_Chr4g0009171 33.019 106 71 0 5 110 154 259 1.21e-13 66.2
Msa0965620 MtrunA17_Chr4g0009171 28.182 110 79 0 1 110 876 985 1.29e-11 60.5
Msa0965620 MtrunA17_Chr4g0006771 35.514 107 69 0 11 117 179 285 2.18e-13 65.5
Msa0965620 MtrunA17_Chr4g0009351 30.508 118 79 1 7 121 71 188 2.20e-13 65.1
Msa0965620 MtrunA17_Chr7g0255681 35.185 108 66 2 5 110 161 266 2.37e-13 65.1
Msa0965620 MtrunA17_Chr7g0255681 31.818 110 75 0 1 110 658 767 1.25e-11 60.5
Msa0965620 MtrunA17_Chr7g0255681 30.909 110 76 0 1 110 1160 1269 1.41e-11 60.1
Msa0965620 MtrunA17_Chr8g0338901 32.258 124 80 2 1 121 175 297 2.45e-13 65.1
Msa0965620 MtrunA17_Chr2g0319921 63.636 55 17 2 59 112 214 266 3.13e-13 64.7
Msa0965620 MtrunA17_Chr4g0009101 30.909 110 76 0 1 110 688 797 3.91e-13 64.7
Msa0965620 MtrunA17_Chr6g0481331 39.024 82 50 0 11 92 217 298 3.95e-13 64.7
Msa0965620 MtrunA17_Chr6g0454951 31.532 111 76 0 1 111 239 349 5.75e-13 64.3
Msa0965620 MtrunA17_Chr6g0455131 27.928 111 80 0 1 111 237 347 6.22e-13 63.9
Msa0965620 MtrunA17_Chr6g0479821 38.318 107 65 1 11 117 177 282 6.40e-13 63.9
Msa0965620 MtrunA17_Chr6g0480311 34.513 113 61 2 11 117 162 267 6.44e-13 63.9
Msa0965620 MtrunA17_Chr4g0025831 34.579 107 69 1 11 117 174 279 6.79e-13 63.9
Msa0965620 MtrunA17_Chr3g0102121 42.553 94 51 2 7 98 169 261 7.02e-13 63.9
Msa0965620 MtrunA17_Chr6g0480271 36.449 107 67 1 11 117 175 280 8.21e-13 63.5
Msa0965620 MtrunA17_Chr4g0005591 30.000 100 70 0 11 110 232 331 9.33e-13 63.5
Msa0965620 MtrunA17_Chr4g0018431 39.560 91 53 2 5 94 168 257 1.13e-12 63.2
Msa0965620 MtrunA17_Chr4g0025741 33.645 107 70 1 11 117 174 279 1.13e-12 63.2
Msa0965620 MtrunA17_Chr6g0454931 27.928 111 80 0 1 111 219 329 1.18e-12 63.2
Msa0965620 MtrunA17_Chr4g0009141 31.132 106 73 0 5 110 674 779 1.45e-12 63.2
Msa0965620 MtrunA17_Chr6g0454851 30.631 111 77 0 1 111 245 355 1.77e-12 62.8
Msa0965620 MtrunA17_Chr2g0300251 37.143 105 65 1 11 115 176 279 2.20e-12 62.4
Msa0965620 MtrunA17_Chr4g0005851 30.909 110 76 0 1 110 182 291 2.23e-12 62.4
Msa0965620 MtrunA17_Chr6g0479641 33.645 107 70 1 11 117 175 280 2.48e-12 62.4
Msa0965620 MtrunA17_Chr6g0479591 34.579 107 69 1 11 117 200 305 2.50e-12 62.4
Msa0965620 MtrunA17_Chr4g0010521 34.862 109 70 1 7 115 159 266 2.72e-12 62.4
Msa0965620 MtrunA17_Chr4g0009301 30.000 110 77 0 1 110 690 799 2.82e-12 62.0
Msa0965620 MtrunA17_Chr8g0354701 41.667 84 47 2 34 117 192 273 2.86e-12 62.0
Msa0965620 MtrunA17_Chr4g0025751 33.645 107 70 1 11 117 174 279 3.15e-12 62.0
Msa0965620 MtrunA17_Chr4g0005891 26.364 110 81 0 1 110 193 302 3.29e-12 62.0
Msa0965620 MtrunA17_Chr6g0474801 39.024 82 50 0 11 92 174 255 3.30e-12 62.0
Msa0965620 MtrunA17_Chr4g0009401 31.818 110 74 1 1 110 649 757 4.85e-12 61.6
Msa0965620 MtrunA17_Chr6g0480461 35.088 114 71 2 11 122 175 287 5.04e-12 61.2
Msa0965620 MtrunA17_Chr4g0025811 34.579 107 69 1 11 117 174 279 5.53e-12 61.2
Msa0965620 MtrunA17_Chr6g0479651 39.815 108 63 2 11 117 177 283 9.36e-12 60.8
Msa0965620 MtrunA17_Chr4g0005871 28.182 110 79 0 1 110 278 387 1.09e-11 60.5
Msa0965620 MtrunA17_Chr1g0146421 37.273 110 62 2 11 117 174 279 1.11e-11 60.5
Msa0965620 MtrunA17_Chr8g0368251 34.579 107 69 1 11 117 174 279 1.23e-11 60.5
Msa0965620 MtrunA17_Chr7g0234891 30.909 110 76 0 1 110 73 182 1.35e-11 60.1
Msa0965620 MtrunA17_Chr6g0455211 28.319 113 79 1 1 111 195 307 1.40e-11 60.1
Msa0965620 MtrunA17_Chr6g0480321 33.333 111 61 2 13 117 34 137 1.62e-11 60.1
Msa0965620 MtrunA17_Chr6g0479001 40.244 82 49 0 11 92 164 245 1.67e-11 60.1
Msa0965620 MtrunA17_Chr3g0102281 41.111 90 50 2 11 98 173 261 1.69e-11 60.1
Msa0965620 MtrunA17_Chr6g0478741 39.286 84 51 0 11 94 164 247 1.70e-11 60.1
Msa0965620 MtrunA17_Chr6g0480521 38.095 84 52 0 11 94 175 258 1.91e-11 59.7
Msa0965620 MtrunA17_Chr3g0102171 41.250 80 46 1 11 90 173 251 1.92e-11 59.7
Msa0965620 MtrunA17_Chr7g0242781 57.692 52 21 1 63 114 1 51 2.29e-11 59.3
Msa0965620 MtrunA17_Chr6g0479731 35.577 104 65 2 11 114 173 274 2.32e-11 59.3
Msa0965620 MtrunA17_Chr6g0481251 38.095 84 52 0 11 94 31 114 2.39e-11 59.3
Msa0965620 MtrunA17_Chr6g0480451 32.710 107 71 1 11 117 239 344 2.62e-11 59.3
Msa0965620 MtrunA17_Chr3g0118981 40.230 87 50 2 7 92 172 257 2.69e-11 59.3
Msa0965620 MtrunA17_Chr6g0480041 36.449 107 67 1 11 117 174 279 3.11e-11 59.3
Msa0965620 MtrunA17_Chr6g0455031 33.333 105 69 1 7 111 180 283 4.36e-11 58.9
Msa0965620 MtrunA17_Chr6g0480151 38.095 84 52 0 11 94 174 257 4.90e-11 58.5
Msa0965620 MtrunA17_Chr4g0005291 33.684 95 55 2 7 94 212 305 6.31e-11 58.2
Msa0965620 MtrunA17_Chr4g0005391 36.842 95 52 2 7 94 202 295 6.95e-11 58.2
Msa0965620 MtrunA17_Chr6g0454821 29.310 116 74 2 1 111 192 304 7.11e-11 58.2
Msa0965620 MtrunA17_Chr6g0478841 39.024 82 50 0 11 92 164 245 8.74e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0965620 AT5G17680.1 43.820 89 49 1 11 99 163 250 1.46e-14 68.9
Msa0965620 AT5G17680.2 43.820 89 49 1 11 99 164 251 1.48e-14 68.9
Msa0965620 AT5G41540.1 39.048 105 58 2 11 110 162 265 1.06e-13 66.6
Msa0965620 AT5G36930.2 38.000 100 61 1 11 110 169 267 4.04e-13 65.1
Msa0965620 AT5G36930.4 38.000 100 61 1 11 110 166 264 4.07e-13 65.1
Msa0965620 AT5G36930.1 38.000 100 61 1 11 110 166 264 4.07e-13 65.1
Msa0965620 AT5G36930.3 38.000 100 61 1 11 110 166 264 4.22e-13 65.1
Msa0965620 AT4G12010.1 49.231 65 33 0 30 94 184 248 9.04e-13 63.9
Msa0965620 AT5G58120.1 34.615 104 64 1 11 110 166 269 1.22e-12 63.5
Msa0965620 AT5G11250.2 37.838 111 63 3 7 114 209 316 1.28e-12 63.5
Msa0965620 AT5G11250.3 37.838 111 63 3 7 114 127 234 1.36e-12 63.5
Msa0965620 AT5G11250.1 37.838 111 63 3 7 114 127 234 1.36e-12 63.5
Msa0965620 AT1G63880.1 32.479 117 74 2 11 123 165 280 1.65e-12 63.2
Msa0965620 AT1G56520.2 32.584 89 56 2 10 98 166 250 2.09e-12 62.8
Msa0965620 AT4G09420.1 46.154 65 35 0 33 97 204 268 2.17e-12 62.8
Msa0965620 AT1G63730.1 32.292 96 65 0 1 96 154 249 2.30e-12 62.8
Msa0965620 AT1G63880.2 32.479 117 74 2 11 123 165 280 2.32e-12 62.8
Msa0965620 AT1G56520.5 32.584 89 56 2 10 98 166 250 2.40e-12 62.8
Msa0965620 AT1G56520.4 32.584 89 56 2 10 98 166 250 2.76e-12 62.4
Msa0965620 AT1G56520.1 32.584 89 56 2 10 98 166 250 3.18e-12 62.4
Msa0965620 AT1G56520.3 32.584 89 56 2 10 98 4 88 4.27e-12 62.0
Msa0965620 AT4G19510.10 36.735 98 61 1 11 107 169 266 1.27e-11 60.8
Msa0965620 AT4G19510.9 36.735 98 61 1 11 107 209 306 1.27e-11 60.8
Msa0965620 AT4G19510.2 36.735 98 61 1 11 107 169 266 1.29e-11 60.8
Msa0965620 AT4G19510.3 36.735 98 61 1 11 107 209 306 1.32e-11 60.5
Msa0965620 AT3G51560.1 43.333 90 45 4 32 117 158 245 1.33e-11 60.5
Msa0965620 AT4G19510.8 36.735 98 61 1 11 107 209 306 1.55e-11 60.5
Msa0965620 AT4G19510.1 36.735 98 61 1 11 107 209 306 1.55e-11 60.5
Msa0965620 AT4G19510.6 36.735 98 61 1 11 107 209 306 1.55e-11 60.5
Msa0965620 AT4G19510.5 36.735 98 61 1 11 107 209 306 1.61e-11 60.5
Msa0965620 AT4G19510.4 36.735 98 61 1 11 107 209 306 1.61e-11 60.5
Msa0965620 AT4G19510.7 36.735 98 61 1 11 107 209 306 1.61e-11 60.5
Msa0965620 AT4G36140.1 50.794 63 30 1 34 96 582 643 1.96e-11 60.1
Msa0965620 AT4G36140.1 40.230 87 50 2 11 96 245 330 7.47e-11 58.5
Msa0965620 AT5G48770.1 37.778 90 56 0 11 100 164 253 2.19e-11 60.1
Msa0965620 AT4G36140.2 50.794 63 30 1 34 96 397 458 2.26e-11 60.1
Msa0965620 AT4G36140.2 40.230 87 50 2 11 96 60 145 8.34e-11 58.5
Msa0965620 AT5G46470.1 39.175 97 56 2 7 101 161 256 2.55e-11 59.7
Msa0965620 AT1G63870.1 30.088 113 78 1 11 123 168 279 2.82e-11 59.7
Msa0965620 AT5G45260.1 45.902 61 32 1 34 94 152 211 3.24e-11 59.7
Msa0965620 AT5G45260.2 45.902 61 32 1 34 94 152 211 3.49e-11 59.3
Msa0965620 AT5G45260.3 45.902 61 32 1 34 94 152 211 3.49e-11 59.3
Msa0965620 AT5G18370.1 41.860 86 49 1 11 96 212 296 5.89e-11 58.9
Msa0965620 AT5G38350.1 35.135 111 63 3 12 114 3 112 7.24e-11 58.5

Find 20 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGTGGAATGGGCGGAAT+AGG 0.266357 6_3:-93140365 Msa0965620:CDS
ACCCTAGCTATGACTTTATA+TGG 0.268392 6_3:-93140335 Msa0965620:CDS
TCAAACAATAATGAATATAT+TGG 0.274805 6_3:-93140498 Msa0965620:CDS
CACTAAATTGATGAGATATC+TGG 0.349497 6_3:+93140312 None:intergenic
GTTGATGGTGTTCGTGCTAT+TGG 0.364774 6_3:-93140389 Msa0965620:CDS
GCTTACATCATCTATAAAAC+AGG 0.385169 6_3:+93140286 None:intergenic
TGTGTTTCAAAAGATTTAGT+TGG 0.405057 6_3:-93140461 Msa0965620:CDS
TGAACTTTCAGGCCACAATC+TGG 0.428739 6_3:-93140539 Msa0965620:intron
TTTGTGGAATGGGCGGAATA+GGG 0.430379 6_3:-93140364 Msa0965620:CDS
GTGTTTCAAAAGATTTAGTT+GGG 0.443329 6_3:-93140460 Msa0965620:CDS
GTTCGTGCTATTGGAATTTG+TGG 0.460600 6_3:-93140380 Msa0965620:CDS
CTATGCCGACAGTTTGAAGT+AGG 0.461240 6_3:+93140216 None:intergenic
TGTAACGATTGCATATTTGA+TGG 0.489676 6_3:+93140189 None:intergenic
TGCTATTGGAATTTGTGGAA+TGG 0.498234 6_3:-93140375 Msa0965620:CDS
GCTATTGGAATTTGTGGAAT+GGG 0.499278 6_3:-93140374 Msa0965620:CDS
GGCCATATAAAGTCATAGCT+AGG 0.515153 6_3:+93140333 None:intergenic
AAAATTTATAGATTATATGA+TGG 0.518505 6_3:-93140263 Msa0965620:CDS
GCCATATAAAGTCATAGCTA+GGG 0.591356 6_3:+93140334 None:intergenic
CAAATCCTACTTCAAACTGT+CGG 0.632548 6_3:-93140221 Msa0965620:CDS
ATTGGAATTTGTGGAATGGG+CGG 0.686885 6_3:-93140371 Msa0965620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTGTTTTTTTTTTTTTT+TGG - chr6_3:93140815-93140834 Msa0965620:intron 10.0%
!!! ATTTCAAACTATTTTTTTTT+TGG - chr6_3:93141017-93141036 Msa0965620:intron 10.0%
!!! TTTCAAACTATTTTTTTTTT+GGG - chr6_3:93141018-93141037 Msa0965620:intron 10.0%
!! AAAATTTATAGATTATATGA+TGG - chr6_3:93141356-93141375 Msa0965620:intron 10.0%
!!! TCTTTGTTTTTTTTTTTTTT+TGG - chr6_3:93140815-93140834 Msa0965620:intron 10.0%
!!! ATTTCAAACTATTTTTTTTT+TGG - chr6_3:93141017-93141036 Msa0965620:intron 10.0%
!!! TTTCAAACTATTTTTTTTTT+GGG - chr6_3:93141018-93141037 Msa0965620:intron 10.0%
!! AAAATTTATAGATTATATGA+TGG - chr6_3:93141356-93141375 Msa0965620:intron 10.0%
!!! TTTTTTTGGTACAAAATATA+AGG - chr6_3:93140829-93140848 Msa0965620:intron 15.0%
!! TCAAACAATAATGAATATAT+TGG - chr6_3:93141121-93141140 Msa0965620:intron 15.0%
!!! TTTTTTTGGTACAAAATATA+AGG - chr6_3:93140829-93140848 Msa0965620:intron 15.0%
!! TCAAACAATAATGAATATAT+TGG - chr6_3:93141121-93141140 Msa0965620:intron 15.0%
!!! AGAAATGTTTTTAGTTTCAA+GGG + chr6_3:93140424-93140443 None:intergenic 20.0%
!! CTAAAAACATTTCTGTATTT+CGG - chr6_3:93140430-93140449 Msa0965620:CDS 20.0%
!! TAAAAACATTTCTGTATTTC+GGG - chr6_3:93140431-93140450 Msa0965620:CDS 20.0%
!!! AGAAATGTTTTTAGTTTCAA+GGG + chr6_3:93140424-93140443 None:intergenic 20.0%
!! CTAAAAACATTTCTGTATTT+CGG - chr6_3:93140430-93140449 Msa0965620:CDS 20.0%
!! TAAAAACATTTCTGTATTTC+GGG - chr6_3:93140431-93140450 Msa0965620:CDS 20.0%
!!! CAGAAATGTTTTTAGTTTCA+AGG + chr6_3:93140425-93140444 None:intergenic 25.0%
!!! AATAGGAAGAACATGTTTTT+TGG + chr6_3:93140613-93140632 None:intergenic 25.0%
! GGATCAACATCATAAAAAAT+AGG + chr6_3:93140630-93140649 None:intergenic 25.0%
! AATCCAAATATTTGTTCTAG+AGG + chr6_3:93141000-93141019 None:intergenic 25.0%
!!! TTTTTTATTTCTCCAGATTG+TGG + chr6_3:93141095-93141114 None:intergenic 25.0%
! TGTGTTTCAAAAGATTTAGT+TGG - chr6_3:93141158-93141177 Msa0965620:intron 25.0%
! GTGTTTCAAAAGATTTAGTT+GGG - chr6_3:93141159-93141178 Msa0965620:intron 25.0%
!!! CAGAAATGTTTTTAGTTTCA+AGG + chr6_3:93140425-93140444 None:intergenic 25.0%
!!! AATAGGAAGAACATGTTTTT+TGG + chr6_3:93140613-93140632 None:intergenic 25.0%
! GGATCAACATCATAAAAAAT+AGG + chr6_3:93140630-93140649 None:intergenic 25.0%
! AATCCAAATATTTGTTCTAG+AGG + chr6_3:93141000-93141019 None:intergenic 25.0%
!!! TTTTTTATTTCTCCAGATTG+TGG + chr6_3:93141095-93141114 None:intergenic 25.0%
! TGTGTTTCAAAAGATTTAGT+TGG - chr6_3:93141158-93141177 Msa0965620:intron 25.0%
! GTGTTTCAAAAGATTTAGTT+GGG - chr6_3:93141159-93141178 Msa0965620:intron 25.0%
TGAATATACCAAGTGTTTAG+AGG + chr6_3:93140273-93140292 None:intergenic 30.0%
AAACACTTGGTATATTCAGA+TGG - chr6_3:93140275-93140294 Msa0965620:CDS 30.0%
GATAACACTAATCTTCAACA+GGG - chr6_3:93140453-93140472 Msa0965620:CDS 30.0%
TCTTTGTTCATGTTTCGTAA+AGG + chr6_3:93140691-93140710 None:intergenic 30.0%
TGGTACAAAATATAAGGTGA+AGG - chr6_3:93140835-93140854 Msa0965620:intron 30.0%
GGTACAAAATATAAGGTGAA+GGG - chr6_3:93140836-93140855 Msa0965620:intron 30.0%
! TACTCTTTGAATTTTTGTCC+TGG + chr6_3:93140875-93140894 None:intergenic 30.0%
!! TTGTTAGTGTCTTTAAAGTG+AGG + chr6_3:93140920-93140939 None:intergenic 30.0%
!! TTGCCTCTAGAACAAATATT+TGG - chr6_3:93140994-93141013 Msa0965620:intron 30.0%
! GAACAACTTTTTGAACTTTC+AGG - chr6_3:93141069-93141088 Msa0965620:intron 30.0%
CACTAAATTGATGAGATATC+TGG + chr6_3:93141310-93141329 None:intergenic 30.0%
GCTTACATCATCTATAAAAC+AGG + chr6_3:93141336-93141355 None:intergenic 30.0%
TGAATATACCAAGTGTTTAG+AGG + chr6_3:93140273-93140292 None:intergenic 30.0%
AAACACTTGGTATATTCAGA+TGG - chr6_3:93140275-93140294 Msa0965620:CDS 30.0%
GATAACACTAATCTTCAACA+GGG - chr6_3:93140453-93140472 Msa0965620:CDS 30.0%
TCTTTGTTCATGTTTCGTAA+AGG + chr6_3:93140691-93140710 None:intergenic 30.0%
TGGTACAAAATATAAGGTGA+AGG - chr6_3:93140835-93140854 Msa0965620:intron 30.0%
GGTACAAAATATAAGGTGAA+GGG - chr6_3:93140836-93140855 Msa0965620:intron 30.0%
! TACTCTTTGAATTTTTGTCC+TGG + chr6_3:93140875-93140894 None:intergenic 30.0%
!! TTGTTAGTGTCTTTAAAGTG+AGG + chr6_3:93140920-93140939 None:intergenic 30.0%
!! TTGCCTCTAGAACAAATATT+TGG - chr6_3:93140994-93141013 Msa0965620:intron 30.0%
! GAACAACTTTTTGAACTTTC+AGG - chr6_3:93141069-93141088 Msa0965620:intron 30.0%
CACTAAATTGATGAGATATC+TGG + chr6_3:93141310-93141329 None:intergenic 30.0%
GCTTACATCATCTATAAAAC+AGG + chr6_3:93141336-93141355 None:intergenic 30.0%
!!! GGCAATGTGAGTCTTTTTTT+TGG + chr6_3:93140241-93140260 None:intergenic 35.0%
AGTGTTTAGAGGATTGGATA+TGG + chr6_3:93140262-93140281 None:intergenic 35.0%
TATCCAATCCTCTAAACACT+TGG - chr6_3:93140262-93140281 Msa0965620:CDS 35.0%
ATACCAAGTGTTTAGAGGAT+TGG + chr6_3:93140268-93140287 None:intergenic 35.0%
GGATAACACTAATCTTCAAC+AGG - chr6_3:93140452-93140471 Msa0965620:CDS 35.0%
AAGATCTGTGAATGCATTCA+TGG - chr6_3:93140585-93140604 Msa0965620:intron 35.0%
TTATGATGTTGATCCTTCTG+AGG - chr6_3:93140635-93140654 Msa0965620:intron 35.0%
AAGATTCCAACAAGACTTTG+AGG - chr6_3:93140707-93140726 Msa0965620:intron 35.0%
AACATTGTGTTTGACTACGA+GGG + chr6_3:93140957-93140976 None:intergenic 35.0%
TAACATTGTGTTTGACTACG+AGG + chr6_3:93140958-93140977 None:intergenic 35.0%
!! TTGCTTTTGAACTCAGTTGA+TGG - chr6_3:93141215-93141234 Msa0965620:intron 35.0%
TGCTATTGGAATTTGTGGAA+TGG - chr6_3:93141244-93141263 Msa0965620:intron 35.0%
GCTATTGGAATTTGTGGAAT+GGG - chr6_3:93141245-93141264 Msa0965620:intron 35.0%
ACCCTAGCTATGACTTTATA+TGG - chr6_3:93141284-93141303 Msa0965620:intron 35.0%
GCCATATAAAGTCATAGCTA+GGG + chr6_3:93141288-93141307 None:intergenic 35.0%
CAAATCCTACTTCAAACTGT+CGG - chr6_3:93141398-93141417 Msa0965620:intron 35.0%
!!! GGCAATGTGAGTCTTTTTTT+TGG + chr6_3:93140241-93140260 None:intergenic 35.0%
AGTGTTTAGAGGATTGGATA+TGG + chr6_3:93140262-93140281 None:intergenic 35.0%
TATCCAATCCTCTAAACACT+TGG - chr6_3:93140262-93140281 Msa0965620:CDS 35.0%
ATACCAAGTGTTTAGAGGAT+TGG + chr6_3:93140268-93140287 None:intergenic 35.0%
GGATAACACTAATCTTCAAC+AGG - chr6_3:93140452-93140471 Msa0965620:CDS 35.0%
AAGATCTGTGAATGCATTCA+TGG - chr6_3:93140585-93140604 Msa0965620:intron 35.0%
TTATGATGTTGATCCTTCTG+AGG - chr6_3:93140635-93140654 Msa0965620:intron 35.0%
AAGATTCCAACAAGACTTTG+AGG - chr6_3:93140707-93140726 Msa0965620:intron 35.0%
AACATTGTGTTTGACTACGA+GGG + chr6_3:93140957-93140976 None:intergenic 35.0%
TAACATTGTGTTTGACTACG+AGG + chr6_3:93140958-93140977 None:intergenic 35.0%
!! TTGCTTTTGAACTCAGTTGA+TGG - chr6_3:93141215-93141234 Msa0965620:intron 35.0%
TGCTATTGGAATTTGTGGAA+TGG - chr6_3:93141244-93141263 Msa0965620:intron 35.0%
GCTATTGGAATTTGTGGAAT+GGG - chr6_3:93141245-93141264 Msa0965620:intron 35.0%
ACCCTAGCTATGACTTTATA+TGG - chr6_3:93141284-93141303 Msa0965620:intron 35.0%
GCCATATAAAGTCATAGCTA+GGG + chr6_3:93141288-93141307 None:intergenic 35.0%
CAAATCCTACTTCAAACTGT+CGG - chr6_3:93141398-93141417 Msa0965620:intron 35.0%
CTGAAGTGATAGATTCACGT+TGG - chr6_3:93140205-93140224 Msa0965620:CDS 40.0%
GATGTGTTTGTCACCTTTAG+AGG - chr6_3:93140357-93140376 Msa0965620:CDS 40.0%
TCGAGCAATCGAAATATCTC+AGG - chr6_3:93140500-93140519 Msa0965620:CDS 40.0%
TTTACGTTGCAGTCTTCTCA+AGG - chr6_3:93140523-93140542 Msa0965620:CDS 40.0%
! GTTCGTGCTATTGGAATTTG+TGG - chr6_3:93141239-93141258 Msa0965620:intron 40.0%
ATTGGAATTTGTGGAATGGG+CGG - chr6_3:93141248-93141267 Msa0965620:intron 40.0%
GGCCATATAAAGTCATAGCT+AGG + chr6_3:93141289-93141308 None:intergenic 40.0%
!! ATTTGCTTTTGTGCATCGAG+GGG + chr6_3:93141383-93141402 None:intergenic 40.0%
!! GATTTGCTTTTGTGCATCGA+GGG + chr6_3:93141384-93141403 None:intergenic 40.0%
CTGAAGTGATAGATTCACGT+TGG - chr6_3:93140205-93140224 Msa0965620:CDS 40.0%
GATGTGTTTGTCACCTTTAG+AGG - chr6_3:93140357-93140376 Msa0965620:CDS 40.0%
TCGAGCAATCGAAATATCTC+AGG - chr6_3:93140500-93140519 Msa0965620:CDS 40.0%
TTTACGTTGCAGTCTTCTCA+AGG - chr6_3:93140523-93140542 Msa0965620:CDS 40.0%
! GTTCGTGCTATTGGAATTTG+TGG - chr6_3:93141239-93141258 Msa0965620:intron 40.0%
ATTGGAATTTGTGGAATGGG+CGG - chr6_3:93141248-93141267 Msa0965620:intron 40.0%
GGCCATATAAAGTCATAGCT+AGG + chr6_3:93141289-93141308 None:intergenic 40.0%
!! ATTTGCTTTTGTGCATCGAG+GGG + chr6_3:93141383-93141402 None:intergenic 40.0%
!! GATTTGCTTTTGTGCATCGA+GGG + chr6_3:93141384-93141403 None:intergenic 40.0%
GCGAGTATCTTCACCTCTAA+AGG + chr6_3:93140373-93140392 None:intergenic 45.0%
GGAACTATGCTTCCTCAACA+TGG - chr6_3:93140544-93140563 Msa0965620:intron 45.0%
TTCTCGTAAGCACCATGTTG+AGG + chr6_3:93140559-93140578 None:intergenic 45.0%
CTTTGCTTTCGAACCTCAGA+AGG + chr6_3:93140651-93140670 None:intergenic 45.0%
! TCTGAGGTTCGAAAGCAAAG+TGG - chr6_3:93140651-93140670 Msa0965620:intron 45.0%
CTGAGGTTCGAAAGCAAAGT+GGG - chr6_3:93140652-93140671 Msa0965620:intron 45.0%
! ACAGCACCTCAAAGTCTTGT+TGG + chr6_3:93140716-93140735 None:intergenic 45.0%
!! ACTTTGAGGTGCTGTCAAGA+TGG - chr6_3:93140721-93140740 Msa0965620:intron 45.0%
!! AGGGAAGCTCTAGAACAAGT+GGG - chr6_3:93140744-93140763 Msa0965620:intron 45.0%
!! GAACAAGTGGGAAGTATCTC+TGG - chr6_3:93140756-93140775 Msa0965620:intron 45.0%
!! AAGTGGGAAGTATCTCTGGT+TGG - chr6_3:93140760-93140779 Msa0965620:intron 45.0%
!! AGTGGGAAGTATCTCTGGTT+GGG - chr6_3:93140761-93140780 Msa0965620:intron 45.0%
TGAACTTTCAGGCCACAATC+TGG - chr6_3:93141080-93141099 Msa0965620:intron 45.0%
!! GTTGATGGTGTTCGTGCTAT+TGG - chr6_3:93141230-93141249 Msa0965620:intron 45.0%
ATTTGTGGAATGGGCGGAAT+AGG - chr6_3:93141254-93141273 Msa0965620:intron 45.0%
TTTGTGGAATGGGCGGAATA+GGG - chr6_3:93141255-93141274 Msa0965620:intron 45.0%
!! GGATTTGCTTTTGTGCATCG+AGG + chr6_3:93141385-93141404 None:intergenic 45.0%
! CTATGCCGACAGTTTGAAGT+AGG + chr6_3:93141406-93141425 None:intergenic 45.0%
GCGAGTATCTTCACCTCTAA+AGG + chr6_3:93140373-93140392 None:intergenic 45.0%
GGAACTATGCTTCCTCAACA+TGG - chr6_3:93140544-93140563 Msa0965620:intron 45.0%
TTCTCGTAAGCACCATGTTG+AGG + chr6_3:93140559-93140578 None:intergenic 45.0%
CTTTGCTTTCGAACCTCAGA+AGG + chr6_3:93140651-93140670 None:intergenic 45.0%
! TCTGAGGTTCGAAAGCAAAG+TGG - chr6_3:93140651-93140670 Msa0965620:intron 45.0%
CTGAGGTTCGAAAGCAAAGT+GGG - chr6_3:93140652-93140671 Msa0965620:intron 45.0%
! ACAGCACCTCAAAGTCTTGT+TGG + chr6_3:93140716-93140735 None:intergenic 45.0%
!! ACTTTGAGGTGCTGTCAAGA+TGG - chr6_3:93140721-93140740 Msa0965620:intron 45.0%
!! AGGGAAGCTCTAGAACAAGT+GGG - chr6_3:93140744-93140763 Msa0965620:intron 45.0%
!! GAACAAGTGGGAAGTATCTC+TGG - chr6_3:93140756-93140775 Msa0965620:intron 45.0%
!! AAGTGGGAAGTATCTCTGGT+TGG - chr6_3:93140760-93140779 Msa0965620:intron 45.0%
!! AGTGGGAAGTATCTCTGGTT+GGG - chr6_3:93140761-93140780 Msa0965620:intron 45.0%
TGAACTTTCAGGCCACAATC+TGG - chr6_3:93141080-93141099 Msa0965620:intron 45.0%
!! GTTGATGGTGTTCGTGCTAT+TGG - chr6_3:93141230-93141249 Msa0965620:intron 45.0%
ATTTGTGGAATGGGCGGAAT+AGG - chr6_3:93141254-93141273 Msa0965620:intron 45.0%
TTTGTGGAATGGGCGGAATA+GGG - chr6_3:93141255-93141274 Msa0965620:intron 45.0%
!! GGATTTGCTTTTGTGCATCG+AGG + chr6_3:93141385-93141404 None:intergenic 45.0%
! CTATGCCGACAGTTTGAAGT+AGG + chr6_3:93141406-93141425 None:intergenic 45.0%
TGAAGATGAGTTGCTGCAGC+TGG + chr6_3:93140301-93140320 None:intergenic 50.0%
CTTCAACAGGGTGAGTCCAT+AGG - chr6_3:93140465-93140484 Msa0965620:CDS 50.0%
TCGAAGAAGCTCAGGTCCTA+TGG + chr6_3:93140484-93140503 None:intergenic 50.0%
TCGATTGCTCGAAGAAGCTC+AGG + chr6_3:93140492-93140511 None:intergenic 50.0%
!! TTGAGGTGCTGTCAAGATGG+AGG - chr6_3:93140724-93140743 Msa0965620:intron 50.0%
!! TGAGGTGCTGTCAAGATGGA+GGG - chr6_3:93140725-93140744 Msa0965620:intron 50.0%
!! GAGGGAAGCTCTAGAACAAG+TGG - chr6_3:93140743-93140762 Msa0965620:intron 50.0%
GTGTTTGACTACGAGGGTTC+AGG + chr6_3:93140951-93140970 None:intergenic 50.0%
TGAAGATGAGTTGCTGCAGC+TGG + chr6_3:93140301-93140320 None:intergenic 50.0%
CTTCAACAGGGTGAGTCCAT+AGG - chr6_3:93140465-93140484 Msa0965620:CDS 50.0%
TCGAAGAAGCTCAGGTCCTA+TGG + chr6_3:93140484-93140503 None:intergenic 50.0%
TCGATTGCTCGAAGAAGCTC+AGG + chr6_3:93140492-93140511 None:intergenic 50.0%
!! TTGAGGTGCTGTCAAGATGG+AGG - chr6_3:93140724-93140743 Msa0965620:intron 50.0%
!! TGAGGTGCTGTCAAGATGGA+GGG - chr6_3:93140725-93140744 Msa0965620:intron 50.0%
!! GAGGGAAGCTCTAGAACAAG+TGG - chr6_3:93140743-93140762 Msa0965620:intron 50.0%
GTGTTTGACTACGAGGGTTC+AGG + chr6_3:93140951-93140970 None:intergenic 50.0%
AAGGGATAGCGCATACGTCC+AGG - chr6_3:93140854-93140873 Msa0965620:intron 55.0%
AAGGGATAGCGCATACGTCC+AGG - chr6_3:93140854-93140873 Msa0965620:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 93140196 93141445 93140196 ID=Msa0965620;Name=Msa0965620
chr6_3 mRNA 93140196 93141445 93140196 ID=Msa0965620-mRNA-1;Parent=Msa0965620;Name=Msa0965620-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.5|0|0|2|0|123
chr6_3 exon 93140196 93140550 93140196 ID=Msa0965620-mRNA-1:exon:17055;Parent=Msa0965620-mRNA-1
chr6_3 exon 93141432 93141445 93141432 ID=Msa0965620-mRNA-1:exon:17054;Parent=Msa0965620-mRNA-1
chr6_3 CDS 93141432 93141445 93141432 ID=Msa0965620-mRNA-1:cds;Parent=Msa0965620-mRNA-1
chr6_3 CDS 93140196 93140550 93140196 ID=Msa0965620-mRNA-1:cds;Parent=Msa0965620-mRNA-1
Gene Sequence

>Msa0965620

ATGCTTTCTCTGAAGCCACAATCTGGAGAAATAAAAAAGATTGTTCAAACAATAATGAATATATTGGAGTGCAAATCTTCATGTGTTTCAAAAGATTTAGTTGGGATTCATTCTCGTATAAAAGCATTACAAAATCATTTGCTTTTGAACTCAGTTGATGGTGTTCGTGCTATTGGAATTTGTGGAATGGGCGGAATAGGGAAGACAACCCTAGCTATGACTTTATATGGCCAGATATCTCATCAATTTAGTGCATCCTGTTTTATAGATGATGTAAGCAAAATTTATAGATTATATGATGGTCCCCTCGATGCACAAAAGCAAATCCTACTTCAAACTGTCGGCATAGAACACCATCAAATATGCAAT
Protein sequence

>Msa0965620

MLSLKPQSGEIKKIVQTIMNILECKSSCVSKDLVGIHSRIKALQNHLLLNSVDGVRAIGICGMGGIGKTTLAMTLYGQISHQFSASCFIDDVSKIYRLYDGPLDAQKQILLQTVGIEHHQICN