Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000240 | XP_027359036.1 | 45.000 | 140 | 43 | 1 | 1 | 106 | 549 | 688 | 1.50e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000240 | A0A2K3NX03 | 66.197 | 71 | 24 | 0 | 4 | 74 | 433 | 503 | 2.25e-18 | 89.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1000230 | Msa1000240 | 0.829192 | 5.907379e-55 | -8.615850e-47 |
| Msa1000240 | Msa1457040 | 0.837198 | 5.986725e-57 | -8.615850e-47 |
| Msa0870830 | Msa1000240 | 0.802816 | 4.687082e-49 | -8.615850e-47 |
| Msa0926890 | Msa1000240 | 0.802716 | 4.915806e-49 | -8.615850e-47 |
| Msa0926900 | Msa1000240 | 0.824126 | 9.555313e-54 | -8.615850e-47 |
| Msa0927090 | Msa1000240 | 0.827759 | 1.309977e-54 | -8.615850e-47 |
| Msa0960720 | Msa1000240 | 0.814388 | 1.580538e-51 | -8.615850e-47 |
| Msa0965610 | Msa1000240 | 0.822881 | 1.868752e-53 | -8.615850e-47 |
| Msa0965620 | Msa1000240 | 0.808140 | 3.584723e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000240 | MtrunA17_Chr6g0486531 | 63.291 | 79 | 24 | 1 | 1 | 74 | 424 | 502 | 1.27e-21 | 88.6 |
| Msa1000240 | MtrunA17_Chr6g0486531 | 69.048 | 42 | 13 | 0 | 75 | 116 | 619 | 660 | 4.52e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCTGTCTGTCTCAGTTTC+AGG | 0.204785 | 6_4:+82949596 | None:intergenic |
| ACATGAGCTCCTAAGGAAAA+AGG | 0.318240 | 6_4:-82948451 | Msa1000240:CDS |
| AAGCAACTTCAGGACGAAAC+AGG | 0.454192 | 6_4:-82948534 | Msa1000240:intron |
| CTTCAGGACGAAACAGGATC+TGG | 0.468831 | 6_4:-82948528 | Msa1000240:intron |
| TCAAAGCACATGAGCTCCTA+AGG | 0.487568 | 6_4:-82948458 | Msa1000240:CDS |
| GATGAAAGTGTACTAGAAAG+TGG | 0.503380 | 6_4:-82949686 | Msa1000240:CDS |
| CGAAACAGGATCTGGAATGA+TGG | 0.515352 | 6_4:-82948520 | Msa1000240:CDS |
| GATTCTGTAACAACAGGGCT+AGG | 0.516573 | 6_4:+82949563 | None:intergenic |
| CTCATGTGCTTTGATAATGT+CGG | 0.550385 | 6_4:+82948467 | None:intergenic |
| AACTGACTCACTTGTTGAAG+TGG | 0.554070 | 6_4:-82949711 | Msa1000240:CDS |
| GGCTGTAAATTCAATTACTG+AGG | 0.629591 | 6_4:-82949771 | Msa1000240:CDS |
| TCAGGAAATCAACACAGTAG+TGG | 0.648084 | 6_4:-82947279 | None:intergenic |
| AGTTTGTGCGGTGACTTCAG+TGG | 0.696642 | 6_4:+82948417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTTTTCTATAAAGA+TGG | - | chr6_4:82949039-82949058 | Msa1000240:intron | 10.0% |
| !! | AAAATTTCAATTAAAGTTAA+TGG | - | chr6_4:82949854-82949873 | Msa1000240:intron | 10.0% |
| !! | AAAAAAAAAAAAACACTTCA+TGG | + | chr6_4:82947308-82947327 | None:intergenic | 15.0% |
| !! | TAAGCTTAATAAAAATTCAT+GGG | + | chr6_4:82947423-82947442 | None:intergenic | 15.0% |
| !!! | ATTGATTTTAGTTGTAATTT+CGG | + | chr6_4:82948300-82948319 | None:intergenic | 15.0% |
| !! | GAAACTTTAAATTAAGTTAA+AGG | + | chr6_4:82949444-82949463 | None:intergenic | 15.0% |
| !!! | AAATATGGATATTTTAGAAT+GGG | + | chr6_4:82949898-82949917 | None:intergenic | 15.0% |
| !!! | TAAATATGGATATTTTAGAA+TGG | + | chr6_4:82949899-82949918 | None:intergenic | 15.0% |
| !! | TATTATCTATGAATTATTCT+TGG | - | chr6_4:82950181-82950200 | Msa1000240:intron | 15.0% |
| !! | CTAAGCTTAATAAAAATTCA+TGG | + | chr6_4:82947424-82947443 | None:intergenic | 20.0% |
| !! | TCACATTCAATTCATATAAT+AGG | + | chr6_4:82947671-82947690 | None:intergenic | 20.0% |
| !!! | TTTGAAACTAAAAATATCCA+AGG | + | chr6_4:82947766-82947785 | None:intergenic | 20.0% |
| !! | AAAACAAAAAATAACCTTCA+TGG | + | chr6_4:82947796-82947815 | None:intergenic | 20.0% |
| !! | AAAATCAAGACAAAACAAAA+GGG | + | chr6_4:82947856-82947875 | None:intergenic | 20.0% |
| !! | AAAAATCAAGACAAAACAAA+AGG | + | chr6_4:82947857-82947876 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTAACTTTGAATC+AGG | - | chr6_4:82948606-82948625 | Msa1000240:intron | 20.0% |
| !!! | CTTAATTTAAAGTTTCAAAC+AGG | - | chr6_4:82949448-82949467 | Msa1000240:intron | 20.0% |
| !!! | GATAGTTTACTATCTTTTTT+TGG | + | chr6_4:82949828-82949847 | None:intergenic | 20.0% |
| !!! | CATTAACCTTATTTACTAAT+TGG | - | chr6_4:82949947-82949966 | Msa1000240:intron | 20.0% |
| !! | TTAAGTGAAAGAAAAATAGT+AGG | + | chr6_4:82950009-82950028 | None:intergenic | 20.0% |
| !! | CTTTTTGTGTTTCAAGAAAT+CGG | - | chr6_4:82947565-82947584 | Msa1000240:intron | 25.0% |
| ! | TTCAATTCATATAATAGGCA+AGG | + | chr6_4:82947666-82947685 | None:intergenic | 25.0% |
| ! | TCAAAATTCAAACTCAGTTA+TGG | + | chr6_4:82947701-82947720 | None:intergenic | 25.0% |
| !!! | GGTTATTTTTTGTTTTTCTG+TGG | - | chr6_4:82947800-82947819 | Msa1000240:intron | 25.0% |
| ! | ACATTACATCAAGAAACATA+AGG | - | chr6_4:82948191-82948210 | Msa1000240:intron | 25.0% |
| ! | ATATCATTTGGTAAGGTAAT+CGG | + | chr6_4:82948363-82948382 | None:intergenic | 25.0% |
| ! | AAAGGAAATATCATTTGGTA+AGG | + | chr6_4:82948370-82948389 | None:intergenic | 25.0% |
| ! | AATGGAAAGGAAATATCATT+TGG | + | chr6_4:82948375-82948394 | None:intergenic | 25.0% |
| ! | TATAATGCAGAAGATCAAAT+AGG | + | chr6_4:82948523-82948542 | None:intergenic | 25.0% |
| ! | GAATGACATCATAATAGAAA+AGG | - | chr6_4:82948566-82948585 | Msa1000240:intron | 25.0% |
| !! | GAAAAGGCATATTTAACAAA+TGG | - | chr6_4:82948582-82948601 | Msa1000240:intron | 25.0% |
| ! | TTGATGGAGAAAAATGAAAA+TGG | + | chr6_4:82948751-82948770 | None:intergenic | 25.0% |
| ! | ACATATTTACTTCTGTTTGA+TGG | + | chr6_4:82948767-82948786 | None:intergenic | 25.0% |
| ! | ATAAAAAAAGTTGGGGAAAA+AGG | + | chr6_4:82948857-82948876 | None:intergenic | 25.0% |
| ! | TATAAAGATGGCTTATACAT+AGG | - | chr6_4:82949051-82949070 | Msa1000240:intron | 25.0% |
| ! | ATATAGTTGCTGCAATATAT+GGG | + | chr6_4:82949161-82949180 | None:intergenic | 25.0% |
| ! | TAAAACGAAAAACTACAACA+GGG | - | chr6_4:82949417-82949436 | Msa1000240:intron | 25.0% |
| ! | ATTTAGACATTTCTTCATGT+AGG | - | chr6_4:82949494-82949513 | Msa1000240:intron | 25.0% |
| ! | ATTACATCTTCAGTTCATTA+AGG | - | chr6_4:82949576-82949595 | Msa1000240:intron | 25.0% |
| !! | AACTATCGTGTTAATTTTCA+TGG | + | chr6_4:82949644-82949663 | None:intergenic | 25.0% |
| ! | AACATGTTTACGAATATGAA+GGG | + | chr6_4:82950158-82950177 | None:intergenic | 25.0% |
| ! | TAACATGTTTACGAATATGA+AGG | + | chr6_4:82950159-82950178 | None:intergenic | 25.0% |
| ! | GTCATAAACAGACAAAAATT+AGG | + | chr6_4:82950223-82950242 | None:intergenic | 25.0% |
| !! | GCATTTTATGAAATTATCAC+CGG | + | chr6_4:82950321-82950340 | None:intergenic | 25.0% |
| ! | TTGTGCACAAAAAGAAAATT+GGG | - | chr6_4:82950376-82950395 | Msa1000240:intron | 25.0% |
| !!! | AATTGTTTTAATGTTCTGTC+AGG | - | chr6_4:82950432-82950451 | Msa1000240:intron | 25.0% |
| ! | TTTCCATAACTGAGTTTTCA+TGG | - | chr6_4:82947740-82947759 | Msa1000240:intron | 30.0% |
| TTTCAAAGTTCAAACCATGA+AGG | - | chr6_4:82947779-82947798 | Msa1000240:intron | 30.0% | |
| !!! | CAACCCTTTTTTTGATTTAG+AGG | - | chr6_4:82947937-82947956 | Msa1000240:intron | 30.0% |
| CAGCCTCTAAATCAAAAAAA+GGG | + | chr6_4:82947943-82947962 | None:intergenic | 30.0% | |
| ACAGCCTCTAAATCAAAAAA+AGG | + | chr6_4:82947944-82947963 | None:intergenic | 30.0% | |
| AAACAATCAAAAAGTGACAG+TGG | - | chr6_4:82948094-82948113 | Msa1000240:intron | 30.0% | |
| ! | TCGCATTCGTATTTTACATA+TGG | - | chr6_4:82948251-82948270 | Msa1000240:intron | 30.0% |
| CAATAACATGCATATGTACA+TGG | - | chr6_4:82948332-82948351 | Msa1000240:intron | 30.0% | |
| !!! | TTCCCCAACTTTTTTTATGT+TGG | - | chr6_4:82948859-82948878 | Msa1000240:intron | 30.0% |
| !!! | TCCCCAACTTTTTTTATGTT+GGG | - | chr6_4:82948860-82948879 | Msa1000240:intron | 30.0% |
| ! | ATGCTATCATTGATAGCTTA+TGG | + | chr6_4:82948976-82948995 | None:intergenic | 30.0% |
| GCTTATACATAGGTTATGTT+TGG | - | chr6_4:82949061-82949080 | Msa1000240:intron | 30.0% | |
| TATAGTTGCTGCAATATATG+GGG | + | chr6_4:82949160-82949179 | None:intergenic | 30.0% | |
| GATATAGTTGCTGCAATATA+TGG | + | chr6_4:82949162-82949181 | None:intergenic | 30.0% | |
| !!! | CGTTTTAGAACTACTTTCTT+TGG | + | chr6_4:82949404-82949423 | None:intergenic | 30.0% |
| CTAAAACGAAAAACTACAAC+AGG | - | chr6_4:82949416-82949435 | Msa1000240:intron | 30.0% | |
| TTAACACGAAAACAAGATCA+AGG | + | chr6_4:82949475-82949494 | None:intergenic | 30.0% | |
| ! | AAAATTGTCAGCTACAGTTT+TGG | + | chr6_4:82949547-82949566 | None:intergenic | 30.0% |
| TCGAATTAGTATATCACTGA+AGG | - | chr6_4:82949735-82949754 | Msa1000240:CDS | 30.0% | |
| CGAATTAGTATATCACTGAA+GGG | - | chr6_4:82949736-82949755 | Msa1000240:CDS | 30.0% | |
| ! | GATATAGGCTAATTTGAAGT+TGG | - | chr6_4:82949758-82949777 | Msa1000240:CDS | 30.0% |
| !! | TGTCTACTTTGGGATAAATA+TGG | + | chr6_4:82949913-82949932 | None:intergenic | 30.0% |
| !!! | ATCCCAAAGTAGACATTTTT+TGG | - | chr6_4:82949918-82949937 | Msa1000240:intron | 30.0% |
| CACCAAAAAATGTCTACTTT+GGG | + | chr6_4:82949923-82949942 | None:intergenic | 30.0% | |
| TCACCAAAAAATGTCTACTT+TGG | + | chr6_4:82949924-82949943 | None:intergenic | 30.0% | |
| GCTAAGCCAATTAGTAAATA+AGG | + | chr6_4:82949956-82949975 | None:intergenic | 30.0% | |
| TATATACACTCTCTTCACAA+AGG | - | chr6_4:82950033-82950052 | Msa1000240:intron | 30.0% | |
| GTTGTGCACAAAAAGAAAAT+TGG | - | chr6_4:82950375-82950394 | Msa1000240:intron | 30.0% | |
| AGTGTAACAAGAATGCACTA+AGG | + | chr6_4:82947461-82947480 | None:intergenic | 35.0% | |
| GGCTGTAAATTCAATTACTG+AGG | - | chr6_4:82947958-82947977 | Msa1000240:intron | 35.0% | |
| ! | GATGAAAGTGTACTAGAAAG+TGG | - | chr6_4:82948043-82948062 | Msa1000240:intron | 35.0% |
| ATCAAAAAGTGACAGTGGAA+AGG | - | chr6_4:82948099-82948118 | Msa1000240:intron | 35.0% | |
| TGTCTGATTCTGTAACAACA+GGG | + | chr6_4:82948174-82948193 | None:intergenic | 35.0% | |
| ATGTCTGATTCTGTAACAAC+AGG | + | chr6_4:82948175-82948194 | None:intergenic | 35.0% | |
| ! | TTCCTTTCCATTTCAAGTAG+AGG | - | chr6_4:82948383-82948402 | Msa1000240:intron | 35.0% |
| ACATTGTCCTCTACTTGAAA+TGG | + | chr6_4:82948393-82948412 | None:intergenic | 35.0% | |
| ! | TTTCAAGTAGAGGACAATGT+TGG | - | chr6_4:82948393-82948412 | Msa1000240:intron | 35.0% |
| !!! | TTCTTGCACTTCTTTTTCAG+TGG | + | chr6_4:82948653-82948672 | None:intergenic | 35.0% |
| ! | TTCATCTAAAGCAGTAATGC+CGG | + | chr6_4:82948705-82948724 | None:intergenic | 35.0% |
| TTAGATGAAGGCTAGAGTAA+AGG | - | chr6_4:82948716-82948735 | Msa1000240:intron | 35.0% | |
| GCCCAACATAAAAAAAGTTG+GGG | + | chr6_4:82948864-82948883 | None:intergenic | 35.0% | |
| GGCCCAACATAAAAAAAGTT+GGG | + | chr6_4:82948865-82948884 | None:intergenic | 35.0% | |
| ATCACATAAGCCAATCCAAA+CGG | + | chr6_4:82948887-82948906 | None:intergenic | 35.0% | |
| AGTCTCGCAAGTTATTATGT+TGG | + | chr6_4:82948918-82948937 | None:intergenic | 35.0% | |
| ! | TAATAACTTGCGAGACTGTT+TGG | - | chr6_4:82948921-82948940 | Msa1000240:intron | 35.0% |
| ATAGTTGCTGCAATATATGG+GGG | + | chr6_4:82949159-82949178 | None:intergenic | 35.0% | |
| !! | CTCATGTGCTTTGATAATGT+CGG | + | chr6_4:82949265-82949284 | None:intergenic | 35.0% |
| ! | TTTCTTTGGTTCAGTTTCCT+TGG | + | chr6_4:82949390-82949409 | None:intergenic | 35.0% |
| AATTCGAATGTTTCACCGAT+CGG | + | chr6_4:82949722-82949741 | None:intergenic | 35.0% | |
| GTATATCACTGAAGGGATAT+AGG | - | chr6_4:82949743-82949762 | Msa1000240:CDS | 35.0% | |
| AATTAAAGTTAATGGCCCTC+TGG | - | chr6_4:82949862-82949881 | Msa1000240:intron | 35.0% | |
| TGTTTACGAATATGAAGGGA+AGG | + | chr6_4:82950154-82950173 | None:intergenic | 35.0% | |
| TCAAATGTCTGTGTTTGTGT+CGG | + | chr6_4:82950271-82950290 | None:intergenic | 35.0% | |
| ACAACTAACACCTACATATG+TGG | + | chr6_4:82950360-82950379 | None:intergenic | 35.0% | |
| AGGCCATGAAAACTCAGTTA+TGG | + | chr6_4:82947746-82947765 | None:intergenic | 40.0% | |
| ! | TAACTGAGTTTTCATGGCCT+TGG | - | chr6_4:82947746-82947765 | Msa1000240:intron | 40.0% |
| ! | AACTGACTCACTTGTTGAAG+TGG | - | chr6_4:82948018-82948037 | Msa1000240:intron | 40.0% |
| GTCCTCTACTTGAAATGGAA+AGG | + | chr6_4:82948388-82948407 | None:intergenic | 40.0% | |
| GCATCAATCTCTCTGTTCTT+TGG | + | chr6_4:82948426-82948445 | None:intergenic | 40.0% | |
| ! | GAGATTGATGCTAGTTTGAC+TGG | - | chr6_4:82948435-82948454 | Msa1000240:CDS | 40.0% |
| AGACACCTGCAGTATTCTAA+CGG | - | chr6_4:82948674-82948693 | Msa1000240:intron | 40.0% | |
| TTTGTCCGTTAGAATACTGC+AGG | + | chr6_4:82948682-82948701 | None:intergenic | 40.0% | |
| ! | CAGTATTCTAACGGACAAAC+CGG | - | chr6_4:82948683-82948702 | Msa1000240:intron | 40.0% |
| ! | GGCATTACTGCTTTAGATGA+AGG | - | chr6_4:82948704-82948723 | Msa1000240:intron | 40.0% |
| GGGCCCAACATAAAAAAAGT+TGG | + | chr6_4:82948866-82948885 | None:intergenic | 40.0% | |
| !!! | TTTTTTATGTTGGGCCCGTT+TGG | - | chr6_4:82948869-82948888 | Msa1000240:intron | 40.0% |
| TCACATAAGCCAATCCAAAC+GGG | + | chr6_4:82948886-82948905 | None:intergenic | 40.0% | |
| TAGTTGCTGCAATATATGGG+GGG | + | chr6_4:82949158-82949177 | None:intergenic | 40.0% | |
| ACATGAGCTCCTAAGGAAAA+AGG | - | chr6_4:82949278-82949297 | Msa1000240:intron | 40.0% | |
| !! | AAATCCTGGCCTTTTTCCTT+AGG | + | chr6_4:82949290-82949309 | None:intergenic | 40.0% |
| TGACTTCAGTGGAAAAATCC+TGG | + | chr6_4:82949304-82949323 | None:intergenic | 40.0% | |
| TCTTTCACTGGAGTAGTTAC+CGG | + | chr6_4:82949347-82949366 | None:intergenic | 40.0% | |
| TGTCAACAGAAGTCCAATTG+TGG | - | chr6_4:82949694-82949713 | Msa1000240:CDS | 40.0% | |
| ATGGGAAAAACTACACCAGA+GGG | + | chr6_4:82949880-82949899 | None:intergenic | 40.0% | |
| AATGGGAAAAACTACACCAG+AGG | + | chr6_4:82949881-82949900 | None:intergenic | 40.0% | |
| AATATGAAGGGAAGGTTAGG+AGG | + | chr6_4:82950146-82950165 | None:intergenic | 40.0% | |
| ACGAATATGAAGGGAAGGTT+AGG | + | chr6_4:82950149-82950168 | None:intergenic | 40.0% | |
| TAACACTAACATGTCGACAC+CGG | - | chr6_4:82950299-82950318 | Msa1000240:intron | 40.0% | |
| CTGAATGCAACCACATATGT+AGG | - | chr6_4:82950347-82950366 | Msa1000240:intron | 40.0% | |
| GATTCTGTAACAACAGGGCT+AGG | + | chr6_4:82948169-82948188 | None:intergenic | 45.0% | |
| !! | AGTGCCGATTTCTCTCATGA+GGG | - | chr6_4:82948462-82948481 | Msa1000240:CDS | 45.0% |
| GCTTCCCTCATGAGAGAAAT+CGG | + | chr6_4:82948469-82948488 | None:intergenic | 45.0% | |
| CATGAGGGAAGCTTGAATAC+AGG | - | chr6_4:82948477-82948496 | Msa1000240:CDS | 45.0% | |
| ! | TTTTCAGTGGCAGGACTTTC+AGG | + | chr6_4:82948640-82948659 | None:intergenic | 45.0% |
| !!! | TGCACTTCTTTTTCAGTGGC+AGG | + | chr6_4:82948649-82948668 | None:intergenic | 45.0% |
| AGCACTTGTGAAGCAACTTC+AGG | - | chr6_4:82949185-82949204 | Msa1000240:intron | 45.0% | |
| AAGCAACTTCAGGACGAAAC+AGG | - | chr6_4:82949195-82949214 | Msa1000240:intron | 45.0% | |
| ! | CGAAACAGGATCTGGAATGA+TGG | - | chr6_4:82949209-82949228 | Msa1000240:intron | 45.0% |
| TCAAAGCACATGAGCTCCTA+AGG | - | chr6_4:82949271-82949290 | Msa1000240:intron | 45.0% | |
| ! | CGGTTTTGCTGAAGTTTGTG+CGG | + | chr6_4:82949327-82949346 | None:intergenic | 45.0% |
| CGCACAAACTTCAGCAAAAC+CGG | - | chr6_4:82949325-82949344 | Msa1000240:intron | 45.0% | |
| GGTAACTACTCCAGTGAAAG+AGG | - | chr6_4:82949346-82949365 | Msa1000240:intron | 45.0% | |
| TTGGACTTCTGTTGACAACG+AGG | + | chr6_4:82949691-82949710 | None:intergenic | 45.0% | |
| !! | AGTCCAATTGTGGTACCGAT+CGG | - | chr6_4:82949704-82949723 | Msa1000240:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTATG+TGG | - | chr6_4:82947320-82947339 | Msa1000240:intron | 5.0% |
| TCGCTGTCTGTCTCAGTTTC+AGG | + | chr6_4:82948136-82948155 | None:intergenic | 50.0% | |
| !! | GAGTGCCGATTTCTCTCATG+AGG | - | chr6_4:82948461-82948480 | Msa1000240:CDS | 50.0% |
| TATGTTGGGCCCGTTTGGAT+TGG | - | chr6_4:82948874-82948893 | Msa1000240:intron | 50.0% | |
| TTGCTGCAATATATGGGGGG+CGG | + | chr6_4:82949155-82949174 | None:intergenic | 50.0% | |
| CTTCAGGACGAAACAGGATC+TGG | - | chr6_4:82949201-82949220 | Msa1000240:intron | 50.0% | |
| AGCTCCTAAGGAAAAAGGCC+AGG | - | chr6_4:82949283-82949302 | Msa1000240:intron | 50.0% | |
| AGTTTGTGCGGTGACTTCAG+TGG | + | chr6_4:82949315-82949334 | None:intergenic | 50.0% | |
| TCACCGATCGGTACCACAAT+TGG | + | chr6_4:82949710-82949729 | None:intergenic | 50.0% | |
| GCAGCAGGTTCCTCTTTCAC+TGG | + | chr6_4:82949359-82949378 | None:intergenic | 55.0% | |
| ACCTGCTGCTACAGAAGCCA+AGG | - | chr6_4:82949370-82949389 | Msa1000240:intron | 55.0% | |
| TCCTTGGCTTCTGTAGCAGC+AGG | + | chr6_4:82949374-82949393 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82947282 | 82950469 | 82947282 | ID=Msa1000240;Name=Msa1000240 |
| chr6_4 | mRNA | 82947282 | 82950469 | 82947282 | ID=Msa1000240-mRNA-1;Parent=Msa1000240;Name=Msa1000240-mRNA-1;_AED=0.49;_eAED=0.52;_QI=0|0|0|0.75|0.33|0.5|4|0|116 |
| chr6_4 | exon | 82950466 | 82950469 | 82950466 | ID=Msa1000240-mRNA-1:exon:16018;Parent=Msa1000240-mRNA-1 |
| chr6_4 | exon | 82949577 | 82949794 | 82949577 | ID=Msa1000240-mRNA-1:exon:16017;Parent=Msa1000240-mRNA-1 |
| chr6_4 | exon | 82948432 | 82948544 | 82948432 | ID=Msa1000240-mRNA-1:exon:16016;Parent=Msa1000240-mRNA-1 |
| chr6_4 | exon | 82947282 | 82947297 | 82947282 | ID=Msa1000240-mRNA-1:exon:16015;Parent=Msa1000240-mRNA-1 |
| chr6_4 | CDS | 82950466 | 82950469 | 82950466 | ID=Msa1000240-mRNA-1:cds;Parent=Msa1000240-mRNA-1 |
| chr6_4 | CDS | 82949577 | 82949794 | 82949577 | ID=Msa1000240-mRNA-1:cds;Parent=Msa1000240-mRNA-1 |
| chr6_4 | CDS | 82948432 | 82948544 | 82948432 | ID=Msa1000240-mRNA-1:cds;Parent=Msa1000240-mRNA-1 |
| chr6_4 | CDS | 82947282 | 82947297 | 82947282 | ID=Msa1000240-mRNA-1:cds;Parent=Msa1000240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
