Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966600 | XP_013453216.1 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 4.10e-156 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966600 | sp|Q8GYD2|MND1_ARATH | 75.943 | 212 | 51 | 0 | 1 | 212 | 1 | 212 | 1.19e-120 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966600 | A0A072UBP5 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 1.96e-156 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0925930 | Msa0966600 | 0.855205 | 7.375110e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966600 | MtrunA17_Chr6g0487551 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 3.77e-160 | 441 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966600 | AT4G29170.1 | 75.943 | 212 | 51 | 0 | 1 | 212 | 1 | 212 | 1.21e-121 | 344 |
| Msa0966600 | AT4G29170.2 | 74.112 | 197 | 51 | 0 | 16 | 212 | 1 | 197 | 1.39e-110 | 316 |
| Msa0966600 | AT4G29170.3 | 79.085 | 153 | 32 | 0 | 1 | 153 | 1 | 153 | 6.16e-85 | 249 |
Find 51 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATGAATTTGACTATT+TGG | 0.177522 | 6_3:+95126776 | Msa0966600:CDS |
| CGAATCTCAAGATTTCTTTC+TGG | 0.188110 | 6_3:+95123144 | Msa0966600:CDS |
| TTGATTAAGGTATGTATTAC+TGG | 0.214361 | 6_3:+95127039 | Msa0966600:three_prime_UTR |
| GCTTACTTACTATTTGATTA+AGG | 0.238273 | 6_3:+95127026 | Msa0966600:three_prime_UTR |
| TTGCTGTCTTAAGCTGGATT+AGG | 0.270772 | 6_3:+95126955 | Msa0966600:three_prime_UTR |
| GTTTGCCTCAGGTATACTTC+TGG | 0.305839 | 6_3:+95125095 | Msa0966600:intron |
| CTGACTAATCACACCCTTCT+TGG | 0.326573 | 6_3:-95124480 | None:intergenic |
| TCCTAGCTGCGCTGGAAATC+AGG | 0.370421 | 6_3:+95125123 | Msa0966600:CDS |
| TGACTAATCACACCCTTCTT+GGG | 0.388123 | 6_3:-95124479 | None:intergenic |
| TCTCTCTTGCTGTCTTAAGC+TGG | 0.388467 | 6_3:+95126949 | Msa0966600:three_prime_UTR |
| GCTTAAGGAGCTTGAGAAGA+TGG | 0.394802 | 6_3:+95124454 | Msa0966600:intron |
| CTCGTTATGCTTCAGCTGAA+TGG | 0.403450 | 6_3:-95125537 | None:intergenic |
| GAAGAAAAGAGGACTTTCAT+TGG | 0.410577 | 6_3:+95123087 | Msa0966600:CDS |
| TAAAGATGTTGTCCAAAGTT+TGG | 0.424035 | 6_3:+95124508 | Msa0966600:CDS |
| GCTGAAGCATAACGAGTTGA+AGG | 0.448016 | 6_3:+95125544 | Msa0966600:CDS |
| GCAGGTTACCATTGCGGCGG+CGG | 0.453280 | 6_3:-95122718 | None:intergenic |
| TTGATTCAGTCGAAGAAAAG+AGG | 0.470370 | 6_3:+95123076 | Msa0966600:intron |
| CTCACATTGCTCGACAAGTT+GGG | 0.470737 | 6_3:-95125341 | None:intergenic |
| CTTGTTTCAAAAGATAAGAT+AGG | 0.479340 | 6_3:+95124542 | Msa0966600:CDS |
| CTCATTGCTTCAAAGGCAGC+AGG | 0.480603 | 6_3:-95125687 | None:intergenic |
| GGTCATCATCCACCAAACTT+TGG | 0.481752 | 6_3:-95124520 | None:intergenic |
| GCAATGTGAGGCACTAAAGA+AGG | 0.484694 | 6_3:+95125354 | Msa0966600:CDS |
| CCTCACATTGCTCGACAAGT+TGG | 0.509517 | 6_3:-95125342 | None:intergenic |
| AGAATCTTCCGCCGCCGCAA+TGG | 0.517053 | 6_3:+95122710 | None:intergenic |
| AAAGAACTTCCCTCAGGCTA+AGG | 0.520012 | 6_3:+95126057 | Msa0966600:CDS |
| TGAGAAGATGGGCCCCAAGA+AGG | 0.520689 | 6_3:+95124466 | Msa0966600:CDS |
| AAGTCATTTCTCTACAAAAG+AGG | 0.527177 | 6_3:-95126919 | None:intergenic |
| GCAGCAGCTAACAGATGGAC+AGG | 0.530552 | 6_3:+95125854 | Msa0966600:CDS |
| AGATGTTGTCCAAAGTTTGG+TGG | 0.534526 | 6_3:+95124511 | Msa0966600:CDS |
| TTCTTAACTCATTGCTTCAA+AGG | 0.538990 | 6_3:-95125694 | None:intergenic |
| CTTAAGGAGCTTGAGAAGAT+GGG | 0.546225 | 6_3:+95124455 | Msa0966600:CDS |
| GAGAAGATGGGCCCCAAGAA+GGG | 0.551371 | 6_3:+95124467 | Msa0966600:CDS |
| CTCATGCAGCAGCTAACAGA+TGG | 0.556525 | 6_3:+95125849 | Msa0966600:CDS |
| TGGAGTCTTCCTAGCTGCGC+TGG | 0.556716 | 6_3:+95125115 | Msa0966600:CDS |
| GAAGCTGTTCCTTAGCCTGA+GGG | 0.565831 | 6_3:-95126066 | None:intergenic |
| TGAGAGAAGCATGGCAACAA+GGG | 0.567710 | 6_3:-95126852 | None:intergenic |
| TTGAGAGAAGCATGGCAACA+AGG | 0.573581 | 6_3:-95126853 | None:intergenic |
| AAAAGATAAGATAGGCACTT+CGG | 0.587768 | 6_3:+95124550 | Msa0966600:CDS |
| GACTAATCACACCCTTCTTG+GGG | 0.593541 | 6_3:-95124478 | None:intergenic |
| GTGTTCAAAGAACTTCCCTC+AGG | 0.594722 | 6_3:+95126051 | Msa0966600:CDS |
| CAATGTGAGGCACTAAAGAA+GGG | 0.596193 | 6_3:+95125355 | Msa0966600:CDS |
| ACCTGATTTCCAGCGCAGCT+AGG | 0.611658 | 6_3:-95125124 | None:intergenic |
| AACTGCAAAACAGTGGTACA+CGG | 0.615147 | 6_3:+95125314 | Msa0966600:CDS |
| TGAAGCTGTTCCTTAGCCTG+AGG | 0.616772 | 6_3:-95126067 | None:intergenic |
| GAGAGAAGCATGGCAACAAG+GGG | 0.617918 | 6_3:-95126851 | None:intergenic |
| GAAGAAGCAGGTTACCATTG+CGG | 0.657667 | 6_3:-95122724 | None:intergenic |
| GCTTCAGAACATGTACCAAG+AGG | 0.670511 | 6_3:+95126084 | Msa0966600:CDS |
| GAAGCAGGTTACCATTGCGG+CGG | 0.671632 | 6_3:-95122721 | None:intergenic |
| GGCACTAAAGAAGGGACGTG+AGG | 0.681032 | 6_3:+95125363 | Msa0966600:CDS |
| CCAACTTGTCGAGCAATGTG+AGG | 0.684357 | 6_3:+95125342 | Msa0966600:CDS |
| GATTCTGAACTGCAAAACAG+TGG | 0.686674 | 6_3:+95125307 | Msa0966600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTATGTAATATTAATAAA+AGG | - | chr6_3:95126656-95126675 | None:intergenic | 10.0% |
| !! | TTTATATAGAAATAGCTTAA+GGG | - | chr6_3:95124008-95124027 | None:intergenic | 15.0% |
| !! | ATTTATATAGAAATAGCTTA+AGG | - | chr6_3:95124009-95124028 | None:intergenic | 15.0% |
| !! | AATTAAGCATAAGAAAATTT+AGG | - | chr6_3:95124384-95124403 | None:intergenic | 15.0% |
| !! | TCAAATAAACCAATTTAAAT+AGG | + | chr6_3:95125002-95125021 | Msa0966600:intron | 15.0% |
| !! | CAAATAAACCAATTTAAATA+GGG | + | chr6_3:95125003-95125022 | Msa0966600:intron | 15.0% |
| !! | AAAAAAAAAAATGCAATGTA+AGG | - | chr6_3:95125471-95125490 | None:intergenic | 15.0% |
| !! | AAATAACGATACATATAAAA+TGG | - | chr6_3:95125734-95125753 | None:intergenic | 15.0% |
| !!! | TATTATGAAATTTCTCATTT+TGG | + | chr6_3:95125945-95125964 | Msa0966600:intron | 15.0% |
| !!! | ATATTTTTATCTTTTTGTTG+TGG | + | chr6_3:95125987-95126006 | Msa0966600:intron | 15.0% |
| !! | CGCATTAATTATGAATTATT+TGG | + | chr6_3:95122976-95122995 | Msa0966600:intron | 20.0% |
| !! | AATTCATAAATCGTTAATGA+TGG | - | chr6_3:95123180-95123199 | None:intergenic | 20.0% |
| !! | ATGCAATTACATTCAATTAT+AGG | - | chr6_3:95123339-95123358 | None:intergenic | 20.0% |
| !!! | ATGTTGTTTTTGTTTAGTTA+AGG | + | chr6_3:95123221-95123240 | Msa0966600:intron | 20.0% |
| !! | ATAAGCTATATTTATAGCAA+AGG | - | chr6_3:95123909-95123928 | None:intergenic | 20.0% |
| !! | ACTAATAAGGATAAAATTGA+TGG | - | chr6_3:95124234-95124253 | None:intergenic | 20.0% |
| !!! | CTTTTCAATTAAGACTAATA+AGG | - | chr6_3:95124247-95124266 | None:intergenic | 20.0% |
| !!! | AAGAAAATTTAGGATTTGTT+TGG | - | chr6_3:95124374-95124393 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTGGATAAAAAA+TGG | + | chr6_3:95125998-95126017 | Msa0966600:intron | 20.0% |
| !!! | ATTTTTTGAATGACCTTTAA+TGG | + | chr6_3:95126215-95126234 | Msa0966600:intron | 20.0% |
| !!! | GTAGTGTTAAATTTTGAAAT+AGG | - | chr6_3:95126363-95126382 | None:intergenic | 20.0% |
| !!! | TTTGCTGTTTCATAAATTTA+AGG | + | chr6_3:95126536-95126555 | Msa0966600:intron | 20.0% |
| !!! | TTGCTGTTTCATAAATTTAA+GGG | + | chr6_3:95126537-95126556 | Msa0966600:intron | 20.0% |
| !!! | TATTGAGTAAATAAGCATTT+TGG | - | chr6_3:95126595-95126614 | None:intergenic | 20.0% |
| !! | CTTATTTACTCAATACAATT+TGG | + | chr6_3:95126600-95126619 | Msa0966600:intron | 20.0% |
| !! | TCTAAGAATAGATAATTTGA+CGG | - | chr6_3:95126697-95126716 | None:intergenic | 20.0% |
| ! | CATAGTTAAAGCGATTTAAT+CGG | - | chr6_3:95122850-95122869 | None:intergenic | 25.0% |
| ! | AACTTAATCGAGTGTTTAAT+CGG | + | chr6_3:95123015-95123034 | Msa0966600:intron | 25.0% |
| !! | GTTACTAAACAGGTATATTT+TGG | - | chr6_3:95123588-95123607 | None:intergenic | 25.0% |
| ! | AATAAGATGTTTATCCAAAC+AGG | + | chr6_3:95123982-95124001 | Msa0966600:intron | 25.0% |
| !!! | CTGTTTTTGCATATGTTATA+AGG | + | chr6_3:95124042-95124061 | Msa0966600:intron | 25.0% |
| !!! | CAAACACAACATTTTGATAA+GGG | - | chr6_3:95124189-95124208 | None:intergenic | 25.0% |
| !!! | TCAAACACAACATTTTGATA+AGG | - | chr6_3:95124190-95124209 | None:intergenic | 25.0% |
| ! | AACAGCAAAATCATATGAAT+CGG | - | chr6_3:95124409-95124428 | None:intergenic | 25.0% |
| !!! | CTATCTTATCTTTTGAAACA+AGG | - | chr6_3:95124544-95124563 | None:intergenic | 25.0% |
| ! | CTTGTTTCAAAAGATAAGAT+AGG | + | chr6_3:95124542-95124561 | Msa0966600:CDS | 25.0% |
| ! | AAAAGTCATAACATGTAACA+TGG | - | chr6_3:95124687-95124706 | None:intergenic | 25.0% |
| !! | ATGTTACATGTTATGACTTT+TGG | + | chr6_3:95124686-95124705 | Msa0966600:intron | 25.0% |
| ! | TGATGTAATTAGGTTACATT+GGG | - | chr6_3:95125244-95125263 | None:intergenic | 25.0% |
| ! | ATGATGTAATTAGGTTACAT+TGG | - | chr6_3:95125245-95125264 | None:intergenic | 25.0% |
| ! | ATTTGATTCCTAAAAAAGCA+GGG | - | chr6_3:95125431-95125450 | None:intergenic | 25.0% |
| ! | TTTGTCTGAATACTTTCATT+GGG | + | chr6_3:95125768-95125787 | Msa0966600:intron | 25.0% |
| !!! | TGATGTATTGGTATTGATTT+TGG | + | chr6_3:95125805-95125824 | Msa0966600:intron | 25.0% |
| ! | AAGTCATATCATTCCATTAA+AGG | - | chr6_3:95126231-95126250 | None:intergenic | 25.0% |
| ! | TCCTTTAAATTGATCAATGT+CGG | + | chr6_3:95126328-95126347 | Msa0966600:intron | 25.0% |
| !!! | TTATGAACGAGATATTTTGA+TGG | + | chr6_3:95126472-95126491 | Msa0966600:intron | 25.0% |
| !! | GATTAAGGCTCTTTAATTTA+AGG | + | chr6_3:95126507-95126526 | Msa0966600:intron | 25.0% |
| ! | TAATAAAAGGACATGTAATG+TGG | - | chr6_3:95126643-95126662 | None:intergenic | 25.0% |
| ! | AACAGATGAATTTGACTATT+TGG | + | chr6_3:95126776-95126795 | Msa0966600:CDS | 25.0% |
| ! | GCTTACTTACTATTTGATTA+AGG | + | chr6_3:95127026-95127045 | Msa0966600:three_prime_UTR | 25.0% |
| ! | TTGATTAAGGTATGTATTAC+TGG | + | chr6_3:95127039-95127058 | Msa0966600:three_prime_UTR | 25.0% |
| CATTCAATTATAGGCTCAAA+CGG | - | chr6_3:95123330-95123349 | None:intergenic | 30.0% | |
| TGTTTAGTTAAGGTTCTGTT+TGG | + | chr6_3:95123507-95123526 | Msa0966600:intron | 30.0% | |
| AAAAACAGCAGTTACTAAAC+AGG | - | chr6_3:95123598-95123617 | None:intergenic | 30.0% | |
| ! | TATCATGTATAAGCTGACTT+AGG | + | chr6_3:95123694-95123713 | Msa0966600:intron | 30.0% |
| ! | ATCATGTATAAGCTGACTTA+GGG | + | chr6_3:95123695-95123714 | Msa0966600:intron | 30.0% |
| TCTTGCTTATAAAGCCAATT+TGG | + | chr6_3:95123850-95123869 | Msa0966600:intron | 30.0% | |
| ! | TTTTTGTACATGCTCCAAAT+TGG | - | chr6_3:95123867-95123886 | None:intergenic | 30.0% |
| ATTTGTTTGGTAGAAACTAG+CGG | - | chr6_3:95124361-95124380 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGCTTTTCAGCTTA+AGG | + | chr6_3:95124439-95124458 | Msa0966600:intron | 30.0% |
| TAAAGATGTTGTCCAAAGTT+TGG | + | chr6_3:95124508-95124527 | Msa0966600:CDS | 30.0% | |
| AAAAGATAAGATAGGCACTT+CGG | + | chr6_3:95124550-95124569 | Msa0966600:CDS | 30.0% | |
| TTGTTCATTTCATCCAAACA+AGG | - | chr6_3:95124712-95124731 | None:intergenic | 30.0% | |
| TATAAGCTACAAACCACTTA+TGG | + | chr6_3:95124911-95124930 | Msa0966600:intron | 30.0% | |
| TTTGGAAGAGCTTATGAATA+TGG | - | chr6_3:95124949-95124968 | None:intergenic | 30.0% | |
| TGCATTGTCCCTATTTAAAT+TGG | - | chr6_3:95125014-95125033 | None:intergenic | 30.0% | |
| TAGGAGCAATAATCAATTAG+AGG | - | chr6_3:95125074-95125093 | None:intergenic | 30.0% | |
| CCAACATATCAACATAAAGA+TGG | - | chr6_3:95125189-95125208 | None:intergenic | 30.0% | |
| CCATCTTTATGTTGATATGT+TGG | + | chr6_3:95125186-95125205 | Msa0966600:intron | 30.0% | |
| TTACATTGGGATACAATAGA+GGG | - | chr6_3:95125231-95125250 | None:intergenic | 30.0% | |
| GTGTTTGCAATGATGTAATT+AGG | - | chr6_3:95125254-95125273 | None:intergenic | 30.0% | |
| CATTTGATTCCTAAAAAAGC+AGG | - | chr6_3:95125432-95125451 | None:intergenic | 30.0% | |
| !!! | CTGCTTTTTTAGGAATCAAA+TGG | + | chr6_3:95125430-95125449 | Msa0966600:intron | 30.0% |
| !!! | TTTTTTAGGAATCAAATGGC+TGG | + | chr6_3:95125434-95125453 | Msa0966600:intron | 30.0% |
| ! | AATGGCTTTTAAATCTGCTA+GGG | - | chr6_3:95125522-95125541 | None:intergenic | 30.0% |
| TTCTTAACTCATTGCTTCAA+AGG | - | chr6_3:95125697-95125716 | None:intergenic | 30.0% | |
| GTTTGTCTGAATACTTTCAT+TGG | + | chr6_3:95125767-95125786 | Msa0966600:intron | 30.0% | |
| !! | CTCATTTTGGTACTATATGA+TGG | + | chr6_3:95125958-95125977 | Msa0966600:intron | 30.0% |
| !!! | ATATTTTCACTCTGAAGCAA+TGG | + | chr6_3:95126029-95126048 | Msa0966600:CDS | 30.0% |
| TGTAACTCATATCCAGTTAT+TGG | + | chr6_3:95126148-95126167 | Msa0966600:intron | 30.0% | |
| ATTGATCAATGCTTACGATT+TGG | - | chr6_3:95126277-95126296 | None:intergenic | 30.0% | |
| ACCGACATTGATCAATTTAA+AGG | - | chr6_3:95126332-95126351 | None:intergenic | 30.0% | |
| TCAATATGCATGTCTTTCAT+TGG | + | chr6_3:95126436-95126455 | Msa0966600:intron | 30.0% | |
| AAGTCATTTCTCTACAAAAG+AGG | - | chr6_3:95126922-95126941 | None:intergenic | 30.0% | |
| TTGATTCAGTCGAAGAAAAG+AGG | + | chr6_3:95123076-95123095 | Msa0966600:intron | 35.0% | |
| GAAGAAAAGAGGACTTTCAT+TGG | + | chr6_3:95123087-95123106 | Msa0966600:CDS | 35.0% | |
| CGAATCTCAAGATTTCTTTC+TGG | + | chr6_3:95123144-95123163 | Msa0966600:CDS | 35.0% | |
| TGTTTAGTTAGAGTCCTGTT+TGG | + | chr6_3:95123231-95123250 | Msa0966600:intron | 35.0% | |
| CAAATTTAACCTCACCAAAC+AGG | - | chr6_3:95123248-95123267 | None:intergenic | 35.0% | |
| ! | CTGTTTGGTGAGGTTAAATT+TGG | + | chr6_3:95123246-95123265 | Msa0966600:intron | 35.0% |
| CTTATGATAGAAGCCGTATT+CGG | - | chr6_3:95123388-95123407 | None:intergenic | 35.0% | |
| TTATACATGATAAGCGCATG+TGG | - | chr6_3:95123686-95123705 | None:intergenic | 35.0% | |
| AAATAAGCCAATCCAAACAG+GGG | - | chr6_3:95123721-95123740 | None:intergenic | 35.0% | |
| CAAATAAGCCAATCCAAACA+GGG | - | chr6_3:95123722-95123741 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr6_3:95123723-95123742 | None:intergenic | 35.0% | |
| TTGAGCTTATCAACTGACAT+AGG | + | chr6_3:95123739-95123758 | Msa0966600:intron | 35.0% | |
| ! | GGTGTTTTCATAAGCTATCT+TGG | + | chr6_3:95124063-95124082 | Msa0966600:intron | 35.0% |
| GAACTATATACAAGCATCAG+CGG | - | chr6_3:95124592-95124611 | None:intergenic | 35.0% | |
| CTTGTATTATTGTCCCTGTA+TGG | + | chr6_3:95124611-95124630 | Msa0966600:intron | 35.0% | |
| AAACTGAAACAGTCCATACA+GGG | - | chr6_3:95124627-95124646 | None:intergenic | 35.0% | |
| TAAACTGAAACAGTCCATAC+AGG | - | chr6_3:95124628-95124647 | None:intergenic | 35.0% | |
| !!! | TTATGACTTTTGGCCTTGTT+TGG | + | chr6_3:95124696-95124715 | Msa0966600:intron | 35.0% |
| CGAAAAATGCTTAGATTTGC+TGG | + | chr6_3:95125037-95125056 | Msa0966600:intron | 35.0% | |
| GAAATCAGGTGAACTTCTAT+TGG | + | chr6_3:95125137-95125156 | Msa0966600:intron | 35.0% | |
| GTTACATTGGGATACAATAG+AGG | - | chr6_3:95125232-95125251 | None:intergenic | 35.0% | |
| CCTAAAAAAGCAGGGAAAAT+TGG | - | chr6_3:95125423-95125442 | None:intergenic | 35.0% | |
| !!! | CCAATTTTCCCTGCTTTTTT+AGG | + | chr6_3:95125420-95125439 | Msa0966600:intron | 35.0% |
| !!! | TTTTTAGGATGAACGAGAAG+CGG | + | chr6_3:95125496-95125515 | Msa0966600:intron | 35.0% |
| ! | GAATGGCTTTTAAATCTGCT+AGG | - | chr6_3:95125523-95125542 | None:intergenic | 35.0% |
| TCATCATGACACTGATGTAT+TGG | + | chr6_3:95125793-95125812 | Msa0966600:intron | 35.0% | |
| !!! | ATTGGTATTGATTTTGGCAG+AGG | + | chr6_3:95125811-95125830 | Msa0966600:intron | 35.0% |
| AACTGAAATGACTAACCTCT+TGG | - | chr6_3:95126102-95126121 | None:intergenic | 35.0% | |
| AACTGGATATGAGTTACACA+CGG | - | chr6_3:95126146-95126165 | None:intergenic | 35.0% | |
| !!! | TGAACGAGATATTTTGATGG+AGG | + | chr6_3:95126475-95126494 | Msa0966600:intron | 35.0% |
| !!! | GAACGAGATATTTTGATGGA+GGG | + | chr6_3:95126476-95126495 | Msa0966600:intron | 35.0% |
| TGGAGGGACTAAATTGATTA+AGG | + | chr6_3:95126492-95126511 | Msa0966600:intron | 35.0% | |
| TTTGGTCCTCGAAATTGTAA+AGG | - | chr6_3:95126577-95126596 | None:intergenic | 35.0% | |
| ATCTGTTATACCAATCTGCA+TGG | - | chr6_3:95126763-95126782 | None:intergenic | 35.0% | |
| !! | TAATCAGCTACTGCTTTTGA+TGG | - | chr6_3:95126816-95126835 | None:intergenic | 35.0% |
| TGCAATTGCAGAAGCTATGA+AGG | - | chr6_3:95122909-95122928 | None:intergenic | 40.0% | |
| ! | TTGCATGTGTTGATGTGTGT+CGG | + | chr6_3:95123353-95123372 | Msa0966600:intron | 40.0% |
| ACGGCTTCTATCATAAGTGT+CGG | + | chr6_3:95123391-95123410 | Msa0966600:intron | 40.0% | |
| !! | CATAAGTGTCGGTGATATAG+AGG | + | chr6_3:95123402-95123421 | Msa0966600:intron | 40.0% |
| !! | GACATGCTACTTGCTATGTT+TGG | + | chr6_3:95123640-95123659 | Msa0966600:intron | 40.0% |
| !! | ATAGGTTTTGTGAGACTGCT+TGG | + | chr6_3:95123757-95123776 | Msa0966600:intron | 40.0% |
| !! | TAGGTTTTGTGAGACTGCTT+GGG | + | chr6_3:95123758-95123777 | Msa0966600:intron | 40.0% |
| AAATAGCTTAAGGGCCTGTT+TGG | - | chr6_3:95123999-95124018 | None:intergenic | 40.0% | |
| CTTAAGGAGCTTGAGAAGAT+GGG | + | chr6_3:95124455-95124474 | Msa0966600:CDS | 40.0% | |
| TGACTAATCACACCCTTCTT+GGG | - | chr6_3:95124482-95124501 | None:intergenic | 40.0% | |
| AGATGTTGTCCAAAGTTTGG+TGG | + | chr6_3:95124511-95124530 | Msa0966600:CDS | 40.0% | |
| GTTTATGACACGTCCATAAG+TGG | - | chr6_3:95124927-95124946 | None:intergenic | 40.0% | |
| TAAACACACGCGAGATTGTT+TGG | - | chr6_3:95124967-95124986 | None:intergenic | 40.0% | |
| AGTATACCTGAGGCAAACAT+AGG | - | chr6_3:95125093-95125112 | None:intergenic | 40.0% | |
| TGGGATACAATAGAGGGAAA+GGG | - | chr6_3:95125225-95125244 | None:intergenic | 40.0% | |
| TTGGGATACAATAGAGGGAA+AGG | - | chr6_3:95125226-95125245 | None:intergenic | 40.0% | |
| GATTCTGAACTGCAAAACAG+TGG | + | chr6_3:95125307-95125326 | Msa0966600:CDS | 40.0% | |
| AACTGCAAAACAGTGGTACA+CGG | + | chr6_3:95125314-95125333 | Msa0966600:CDS | 40.0% | |
| ! | CAATGTGAGGCACTAAAGAA+GGG | + | chr6_3:95125355-95125374 | Msa0966600:CDS | 40.0% |
| AAATTGGCATCTGGTAGAAG+AGG | - | chr6_3:95125407-95125426 | None:intergenic | 40.0% | |
| ! | AAGCATAACGAGTTGAAGGT+TGG | + | chr6_3:95125548-95125567 | Msa0966600:intron | 40.0% |
| TTGTCACCTGTATTGTGTCT+AGG | + | chr6_3:95125905-95125924 | Msa0966600:intron | 40.0% | |
| ACCTGTATTGTGTCTAGGAA+GGG | + | chr6_3:95125910-95125929 | Msa0966600:intron | 40.0% | |
| ACTGGATATGAGTTACACAC+GGG | - | chr6_3:95126145-95126164 | None:intergenic | 40.0% | |
| !!! | TCCAGTTATTGGCCTTCTTT+TGG | + | chr6_3:95126159-95126178 | Msa0966600:intron | 40.0% |
| ACCAAAAGAAGGCCAATAAC+TGG | - | chr6_3:95126163-95126182 | None:intergenic | 40.0% | |
| !!! | TATTGGCCTTCTTTTGGTTC+TGG | + | chr6_3:95126165-95126184 | Msa0966600:intron | 40.0% |
| ACTATGCCAGAACCAAAAGA+AGG | - | chr6_3:95126174-95126193 | None:intergenic | 40.0% | |
| TTCTGGCATAGTTGCATCAA+TGG | + | chr6_3:95126182-95126201 | Msa0966600:intron | 40.0% | |
| ! | GATCAATGCTTACGATTTGG+AGG | - | chr6_3:95126274-95126293 | None:intergenic | 40.0% |
| GTCCTCGAAATTGTAAAGGT+CGG | - | chr6_3:95126573-95126592 | None:intergenic | 40.0% | |
| TTGCTGTCTTAAGCTGGATT+AGG | + | chr6_3:95126955-95126974 | Msa0966600:three_prime_UTR | 40.0% | |
| GAAGAAGCAGGTTACCATTG+CGG | - | chr6_3:95122727-95122746 | None:intergenic | 45.0% | |
| ATGATCGGAAGAGAAGAAGC+AGG | - | chr6_3:95122739-95122758 | None:intergenic | 45.0% | |
| AACGCGCGTTGAGAAATGAT+CGG | - | chr6_3:95122754-95122773 | None:intergenic | 45.0% | |
| ! | AGTTAGAGTCCTGTTTGGTG+AGG | + | chr6_3:95123236-95123255 | Msa0966600:intron | 45.0% |
| GCTTAAGGAGCTTGAGAAGA+TGG | + | chr6_3:95124454-95124473 | Msa0966600:intron | 45.0% | |
| GACTAATCACACCCTTCTTG+GGG | - | chr6_3:95124481-95124500 | None:intergenic | 45.0% | |
| CTGACTAATCACACCCTTCT+TGG | - | chr6_3:95124483-95124502 | None:intergenic | 45.0% | |
| GGTCATCATCCACCAAACTT+TGG | - | chr6_3:95124523-95124542 | None:intergenic | 45.0% | |
| ATTGCTCCTATGTTTGCCTC+AGG | + | chr6_3:95125084-95125103 | Msa0966600:intron | 45.0% | |
| GTTTGCCTCAGGTATACTTC+TGG | + | chr6_3:95125095-95125114 | Msa0966600:intron | 45.0% | |
| ! | AGACTCCAGAAGTATACCTG+AGG | - | chr6_3:95125103-95125122 | None:intergenic | 45.0% |
| CTCACATTGCTCGACAAGTT+GGG | - | chr6_3:95125344-95125363 | None:intergenic | 45.0% | |
| ! | GCAATGTGAGGCACTAAAGA+AGG | + | chr6_3:95125354-95125373 | Msa0966600:CDS | 45.0% |
| AAGCAGGGAAAATTGGCATC+TGG | - | chr6_3:95125416-95125435 | None:intergenic | 45.0% | |
| CTCGTTATGCTTCAGCTGAA+TGG | - | chr6_3:95125540-95125559 | None:intergenic | 45.0% | |
| ! | GCTGAAGCATAACGAGTTGA+AGG | + | chr6_3:95125544-95125563 | Msa0966600:CDS | 45.0% |
| CACCTGTATTGTGTCTAGGA+AGG | + | chr6_3:95125909-95125928 | Msa0966600:intron | 45.0% | |
| TCCCTTCCTAGACACAATAC+AGG | - | chr6_3:95125914-95125933 | None:intergenic | 45.0% | |
| GTGTTCAAAGAACTTCCCTC+AGG | + | chr6_3:95126051-95126070 | Msa0966600:CDS | 45.0% | |
| AAAGAACTTCCCTCAGGCTA+AGG | + | chr6_3:95126057-95126076 | Msa0966600:CDS | 45.0% | |
| GCTTCAGAACATGTACCAAG+AGG | + | chr6_3:95126084-95126103 | Msa0966600:CDS | 45.0% | |
| CTGGATATGAGTTACACACG+GGG | - | chr6_3:95126144-95126163 | None:intergenic | 45.0% | |
| GACCGACCTTTACAATTTCG+AGG | + | chr6_3:95126568-95126587 | Msa0966600:intron | 45.0% | |
| TACCAATCTGCATGGTGACA+TGG | - | chr6_3:95126755-95126774 | None:intergenic | 45.0% | |
| !! | GCTACTGCTTTTGATGGAAG+AGG | - | chr6_3:95126810-95126829 | None:intergenic | 45.0% |
| ! | TGAGAGAAGCATGGCAACAA+GGG | - | chr6_3:95126855-95126874 | None:intergenic | 45.0% |
| ! | TTGAGAGAAGCATGGCAACA+AGG | - | chr6_3:95126856-95126875 | None:intergenic | 45.0% |
| GTCAGTGTTTGAGAGAAGCA+TGG | - | chr6_3:95126864-95126883 | None:intergenic | 45.0% | |
| ! | TCTCTCTTGCTGTCTTAAGC+TGG | + | chr6_3:95126949-95126968 | Msa0966600:three_prime_UTR | 45.0% |
| !!! | TTTTTTTTTTTTTTCTTTTT+AGG | + | chr6_3:95125481-95125500 | Msa0966600:intron | 5.0% |
| ! | GTGTTGATGTGTGTCGGTGT+CGG | + | chr6_3:95123359-95123378 | Msa0966600:intron | 50.0% |
| GCAAACACGATGTGCAGCTT+AGG | + | chr6_3:95125266-95125285 | Msa0966600:intron | 50.0% | |
| CCTCACATTGCTCGACAAGT+TGG | - | chr6_3:95125345-95125364 | None:intergenic | 50.0% | |
| CCAACTTGTCGAGCAATGTG+AGG | + | chr6_3:95125342-95125361 | Msa0966600:CDS | 50.0% | |
| CTCATTGCTTCAAAGGCAGC+AGG | - | chr6_3:95125690-95125709 | None:intergenic | 50.0% | |
| CTCATGCAGCAGCTAACAGA+TGG | + | chr6_3:95125849-95125868 | Msa0966600:CDS | 50.0% | |
| TTGTGTCTAGGAAGGGAGAG+TGG | + | chr6_3:95125917-95125936 | Msa0966600:intron | 50.0% | |
| GAAGCTGTTCCTTAGCCTGA+GGG | - | chr6_3:95126069-95126088 | None:intergenic | 50.0% | |
| TGAAGCTGTTCCTTAGCCTG+AGG | - | chr6_3:95126070-95126089 | None:intergenic | 50.0% | |
| CACCATGTCACCATGCAGAT+TGG | + | chr6_3:95126750-95126769 | Msa0966600:intron | 50.0% | |
| ! | GAGAGAAGCATGGCAACAAG+GGG | - | chr6_3:95126854-95126873 | None:intergenic | 50.0% |
| GAAGCAGGTTACCATTGCGG+CGG | - | chr6_3:95122724-95122743 | None:intergenic | 55.0% | |
| !! | TCGGTGTCGGACACCGAATA+CGG | + | chr6_3:95123372-95123391 | Msa0966600:intron | 55.0% |
| CTTAGGGCCCCTGTTTGGAT+TGG | + | chr6_3:95123711-95123730 | Msa0966600:intron | 55.0% | |
| TGAGAAGATGGGCCCCAAGA+AGG | + | chr6_3:95124466-95124485 | Msa0966600:CDS | 55.0% | |
| GAGAAGATGGGCCCCAAGAA+GGG | + | chr6_3:95124467-95124486 | Msa0966600:CDS | 55.0% | |
| TCCTAGCTGCGCTGGAAATC+AGG | + | chr6_3:95125123-95125142 | Msa0966600:CDS | 55.0% | |
| ACCTGATTTCCAGCGCAGCT+AGG | - | chr6_3:95125127-95125146 | None:intergenic | 55.0% | |
| GGCACTAAAGAAGGGACGTG+AGG | + | chr6_3:95125363-95125382 | Msa0966600:CDS | 55.0% | |
| GCAGCAGCTAACAGATGGAC+AGG | + | chr6_3:95125854-95125873 | Msa0966600:CDS | 55.0% | |
| CACACGGGGATTGCAGATTG+AGG | - | chr6_3:95126130-95126149 | None:intergenic | 55.0% | |
| ! | GCTGACTTAGGGCCCCTGTT+TGG | + | chr6_3:95123706-95123725 | Msa0966600:intron | 60.0% |
| TGGAGTCTTCCTAGCTGCGC+TGG | + | chr6_3:95125115-95125134 | Msa0966600:CDS | 60.0% | |
| GCAGGTTACCATTGCGGCGG+CGG | - | chr6_3:95122721-95122740 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 95122713 | 95127068 | 95122713 | ID=Msa0966600;Name=Msa0966600 |
| chr6_3 | mRNA | 95122713 | 95127068 | 95122713 | ID=Msa0966600-mRNA-1;Parent=Msa0966600;Name=Msa0966600-mRNA-1;_AED=0.17;_eAED=0.17;_QI=16|1|1|1|0.9|0.81|11|184|218 |
| chr6_3 | exon | 95122713 | 95122731 | 95122713 | ID=Msa0966600-mRNA-1:exon:17611;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95123085 | 95123165 | 95123085 | ID=Msa0966600-mRNA-1:exon:17612;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95124455 | 95124571 | 95124455 | ID=Msa0966600-mRNA-1:exon:17613;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95125106 | 95125144 | 95125106 | ID=Msa0966600-mRNA-1:exon:17614;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95125283 | 95125390 | 95125283 | ID=Msa0966600-mRNA-1:exon:17615;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95125503 | 95125565 | 95125503 | ID=Msa0966600-mRNA-1:exon:17616;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95125657 | 95125708 | 95125657 | ID=Msa0966600-mRNA-1:exon:17617;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95125831 | 95125875 | 95125831 | ID=Msa0966600-mRNA-1:exon:17618;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95126026 | 95126105 | 95126026 | ID=Msa0966600-mRNA-1:exon:17619;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95126768 | 95126864 | 95126768 | ID=Msa0966600-mRNA-1:exon:17620;Parent=Msa0966600-mRNA-1 |
| chr6_3 | exon | 95126913 | 95127068 | 95126913 | ID=Msa0966600-mRNA-1:exon:17621;Parent=Msa0966600-mRNA-1 |
| chr6_3 | five_prime_UTR | 95122713 | 95122728 | 95122713 | ID=Msa0966600-mRNA-1:five_prime_utr;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95122729 | 95122731 | 95122729 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95123085 | 95123165 | 95123085 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95124455 | 95124571 | 95124455 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95125106 | 95125144 | 95125106 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95125283 | 95125390 | 95125283 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95125503 | 95125565 | 95125503 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95125657 | 95125708 | 95125657 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95125831 | 95125875 | 95125831 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95126026 | 95126105 | 95126026 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | CDS | 95126768 | 95126836 | 95126768 | ID=Msa0966600-mRNA-1:cds;Parent=Msa0966600-mRNA-1 |
| chr6_3 | three_prime_UTR | 95126837 | 95126864 | 95126837 | ID=Msa0966600-mRNA-1:three_prime_utr;Parent=Msa0966600-mRNA-1 |
| chr6_3 | three_prime_UTR | 95126913 | 95127068 | 95126913 | ID=Msa0966600-mRNA-1:three_prime_utr;Parent=Msa0966600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
