Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925930 | XP_013453216.1 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 3.88e-156 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925930 | sp|Q8GYD2|MND1_ARATH | 76.415 | 212 | 50 | 0 | 1 | 212 | 1 | 212 | 2.66e-121 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056230 | Msa0925930 | -0.800864 | 1.179932e-48 | -8.615850e-47 |
| Msa0111110 | Msa0925930 | -0.800174 | 1.630988e-48 | -8.615850e-47 |
| Msa0612090 | Msa0925930 | -0.812711 | 3.695183e-51 | -8.615850e-47 |
| Msa0619030 | Msa0925930 | -0.809416 | 1.912790e-50 | -8.615850e-47 |
| Msa0686950 | Msa0925930 | -0.813157 | 2.950466e-51 | -8.615850e-47 |
| Msa0715330 | Msa0925930 | 0.819684 | 1.020358e-52 | -8.615850e-47 |
| Msa0827520 | Msa0925930 | -0.810284 | 1.244200e-50 | -8.615850e-47 |
| Msa0369580 | Msa0925930 | -0.828775 | 7.452581e-55 | -8.615850e-47 |
| Msa0463820 | Msa0925930 | -0.830557 | 2.745784e-55 | -8.615850e-47 |
| Msa0919120 | Msa0925930 | -0.814767 | 1.302627e-51 | -8.615850e-47 |
| Msa0925930 | Msa0966580 | 0.802252 | 6.127710e-49 | -8.615850e-47 |
| Msa0925930 | Msa0966600 | 0.855205 | 7.375110e-62 | -8.615850e-47 |
| Msa0925930 | Msa0983680 | -0.804880 | 1.746568e-49 | -8.615850e-47 |
| Msa0925930 | Msa1009940 | -0.813345 | 2.682455e-51 | -8.615850e-47 |
| Msa0925930 | Msa1011140 | -0.824601 | 7.387445e-54 | -8.615850e-47 |
| Msa0925930 | Msa1219530 | -0.821752 | 3.416395e-53 | -8.615850e-47 |
| Msa0925930 | Msa1333220 | -0.844347 | 7.996839e-59 | -8.615850e-47 |
| Msa0925930 | Msa1354860 | -0.804350 | 2.253545e-49 | -8.615850e-47 |
| Msa0925930 | Msa1407160 | -0.802427 | 5.638965e-49 | -8.615850e-47 |
| Msa0925930 | Msa1409360 | -0.821700 | 3.511688e-53 | -8.615850e-47 |
| Msa0925930 | Msa1422820 | -0.809873 | 1.525374e-50 | -8.615850e-47 |
| Msa0925930 | Msa1434710 | -0.810415 | 1.166138e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925930 | MtrunA17_Chr6g0487551 | 97.248 | 218 | 6 | 0 | 1 | 218 | 1 | 218 | 3.57e-160 | 441 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0925930 | AT4G29170.1 | 76.415 | 212 | 50 | 0 | 1 | 212 | 1 | 212 | 2.70e-122 | 346 |
| Msa0925930 | AT4G29170.2 | 74.619 | 197 | 50 | 0 | 16 | 212 | 1 | 197 | 3.90e-111 | 317 |
| Msa0925930 | AT4G29170.3 | 79.739 | 153 | 31 | 0 | 1 | 153 | 1 | 153 | 1.67e-85 | 250 |
Find 54 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATGAATTTGACTATT+TGG | 0.177522 | 6_2:-69213878 | Msa0925930:CDS |
| CGAATCTCAAGATTTCTTTC+TGG | 0.188110 | 6_2:-69217717 | Msa0925930:intron |
| TTGATTAAGGTAGGTATTAC+TGG | 0.242748 | 6_2:-69213600 | Msa0925930:three_prime_UTR |
| TCTCTCTTGCTGTCTTAATC+TGG | 0.253233 | 6_2:-69213690 | Msa0925930:three_prime_UTR |
| GCTTACTTACTATTTGATTA+AGG | 0.304162 | 6_2:-69213613 | Msa0925930:three_prime_UTR |
| GTTTGCCTCAGGTATACTTC+TGG | 0.305839 | 6_2:-69215547 | Msa0925930:intron |
| CTGACTAATCACACCCTTCT+TGG | 0.326573 | 6_2:+69216128 | None:intergenic |
| TTGCTGTCTTAATCTGGATT+AGG | 0.331557 | 6_2:-69213684 | Msa0925930:three_prime_UTR |
| TATTTAATCAGCTACTGCTT+TGG | 0.360341 | 6_2:+69213837 | None:intergenic |
| TCCTAGCTGCGCTGGAAATC+AGG | 0.370421 | 6_2:-69215519 | Msa0925930:intron |
| TGACTAATCACACCCTTCTT+GGG | 0.388123 | 6_2:+69216129 | None:intergenic |
| GCTTAAGGAGCTTGAGAAGA+TGG | 0.394802 | 6_2:-69216154 | Msa0925930:CDS |
| CTCGTTATGCTTCAGCTGAA+TGG | 0.403450 | 6_2:+69215107 | None:intergenic |
| GAAGAAAAGAGGACTTTCAT+TGG | 0.410577 | 6_2:-69217774 | Msa0925930:CDS |
| TAAAGATGTTGTCCAAAGTT+TGG | 0.424035 | 6_2:-69216100 | Msa0925930:CDS |
| GCTGAAGCATAACGAGTTGA+AGG | 0.448016 | 6_2:-69215100 | Msa0925930:intron |
| AAGCATGGCAACAAGGGGAC+TGG | 0.458564 | 6_2:+69213793 | None:intergenic |
| TTGATTCAGTCGAAGAAAAG+AGG | 0.470370 | 6_2:-69217785 | Msa0925930:intron |
| CTCACATTGCTCGACAAGTT+GGG | 0.470737 | 6_2:+69215301 | None:intergenic |
| CTTGTTTCAAAAGATAAGAT+AGG | 0.479340 | 6_2:-69216066 | Msa0925930:CDS |
| CTCATTGCTTCAAAGGCAGC+AGG | 0.480603 | 6_2:+69214957 | None:intergenic |
| GGTCATCATCCACCAAACTT+TGG | 0.481752 | 6_2:+69216088 | None:intergenic |
| GCAATGTGAGGCACTAAAGA+AGG | 0.484694 | 6_2:-69215288 | Msa0925930:CDS |
| AGCATGGCAACAAGGGGACT+GGG | 0.487279 | 6_2:+69213794 | None:intergenic |
| GTAGCTGATTAAATATTGCT+TGG | 0.496624 | 6_2:-69213829 | Msa0925930:exon |
| AAGGCATTTCTCTACAAAAG+AGG | 0.507481 | 6_2:+69213720 | None:intergenic |
| CCTCACATTGCTCGACAAGT+TGG | 0.509517 | 6_2:+69215300 | None:intergenic |
| TAATCAGCTACTGCTTTGGA+TGG | 0.511426 | 6_2:+69213841 | None:intergenic |
| AAAGAACTTCCCTCAGGCTA+AGG | 0.520012 | 6_2:-69214587 | Msa0925930:CDS |
| TGAGAAGATGGGCCCCAAGA+AGG | 0.520689 | 6_2:-69216142 | Msa0925930:CDS |
| GCAGCAGCTAACAGATGGAC+AGG | 0.530552 | 6_2:-69214790 | Msa0925930:intron |
| AGATGTTGTCCAAAGTTTGG+TGG | 0.534526 | 6_2:-69216097 | Msa0925930:CDS |
| TTCTTAACTCATTGCTTCAA+AGG | 0.538990 | 6_2:+69214950 | None:intergenic |
| CTTAAGGAGCTTGAGAAGAT+GGG | 0.546225 | 6_2:-69216153 | Msa0925930:CDS |
| GAGAAGATGGGCCCCAAGAA+GGG | 0.551371 | 6_2:-69216141 | Msa0925930:CDS |
| CTCATGCAGCAGCTAACAGA+TGG | 0.556525 | 6_2:-69214795 | Msa0925930:CDS |
| TGGAGTCTTCCTAGCTGCGC+TGG | 0.556716 | 6_2:-69215527 | Msa0925930:CDS |
| GAAGCTGTTCCTTAGCCTGA+GGG | 0.565831 | 6_2:+69214578 | None:intergenic |
| TGAGAGAAGCATGGCAACAA+GGG | 0.571164 | 6_2:+69213787 | None:intergenic |
| ACTTACTATTTGATTAAGGT+AGG | 0.573308 | 6_2:-69213609 | Msa0925930:three_prime_UTR |
| TTGAGAGAAGCATGGCAACA+AGG | 0.573581 | 6_2:+69213786 | None:intergenic |
| GCTACTGCTTTGGATGGAAG+AGG | 0.578314 | 6_2:+69213847 | None:intergenic |
| AAAAGATAAGATAGGCACTT+CGG | 0.587768 | 6_2:-69216058 | Msa0925930:intron |
| GACTAATCACACCCTTCTTG+GGG | 0.593541 | 6_2:+69216130 | None:intergenic |
| GTGTTCAAAGAACTTCCCTC+AGG | 0.594722 | 6_2:-69214593 | Msa0925930:CDS |
| CAATGTGAGGCACTAAAGAA+GGG | 0.596193 | 6_2:-69215287 | Msa0925930:CDS |
| GCTTCAGAACATTTACCAAG+AGG | 0.611365 | 6_2:-69214560 | Msa0925930:intron |
| ACCTGATTTCCAGCGCAGCT+AGG | 0.611658 | 6_2:+69215518 | None:intergenic |
| AACTGCAAAACAGTGGTACA+CGG | 0.615147 | 6_2:-69215328 | Msa0925930:CDS |
| TGAAGCTGTTCCTTAGCCTG+AGG | 0.616772 | 6_2:+69214577 | None:intergenic |
| GAGAGAAGCATGGCAACAAG+GGG | 0.649943 | 6_2:+69213788 | None:intergenic |
| GGCACTAAAGAAGGGACGTG+AGG | 0.681032 | 6_2:-69215279 | Msa0925930:CDS |
| CCAACTTGTCGAGCAATGTG+AGG | 0.684357 | 6_2:-69215300 | Msa0925930:CDS |
| GATTCTGAACTGCAAAACAG+TGG | 0.686674 | 6_2:-69215335 | Msa0925930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCGGTAATAATTTTAAAAAA+TGG | - | chr6_2:69214432-69214451 | Msa0925930:intron | 15.0% |
| !! | TTTATATAGAAATAGCTTAA+GGG | + | chr6_2:69215125-69215144 | None:intergenic | 15.0% |
| !! | ATTTATATAGAAATAGCTTA+AGG | + | chr6_2:69215126-69215145 | None:intergenic | 15.0% |
| !! | AATTAAGCATAAGAAAATTT+AGG | + | chr6_2:69215501-69215520 | None:intergenic | 15.0% |
| !! | TCAAATAAACCAATTTAAAT+AGG | - | chr6_2:69216085-69216104 | Msa0925930:CDS | 15.0% |
| !! | CAAATAAACCAATTTAAATA+GGG | - | chr6_2:69216086-69216105 | Msa0925930:CDS | 15.0% |
| !! | AAAAAAAAAAATGCAATGTA+AGG | + | chr6_2:69216554-69216573 | None:intergenic | 15.0% |
| !! | AAATAACGATACATATAAAA+TGG | + | chr6_2:69216815-69216834 | None:intergenic | 15.0% |
| !!! | TATTATGAAATTTCTCATTT+TGG | - | chr6_2:69217026-69217045 | Msa0925930:intron | 15.0% |
| !!! | ATATTTTTATCTTTTTGTTG+TGG | - | chr6_2:69217068-69217087 | Msa0925930:intron | 15.0% |
| !!! | AATATTCAAGTTAACATTTT+CGG | + | chr6_2:69217974-69217993 | None:intergenic | 15.0% |
| !! | CGCATTAATTATGAATTATT+TGG | - | chr6_2:69213840-69213859 | Msa0925930:CDS | 20.0% |
| !! | AATTCATAAATCGTTAATGA+TGG | + | chr6_2:69214044-69214063 | None:intergenic | 20.0% |
| !!! | ATGTTGTTTTTGTTTAGTTA+AGG | - | chr6_2:69214085-69214104 | Msa0925930:intron | 20.0% |
| !! | ATAAGCTATATTTATAGCAA+AGG | + | chr6_2:69215026-69215045 | None:intergenic | 20.0% |
| !! | ACTAATAAGGATAAAATTGA+TGG | + | chr6_2:69215351-69215370 | None:intergenic | 20.0% |
| !!! | CTTTTCAATTAAGACTAATA+AGG | + | chr6_2:69215364-69215383 | None:intergenic | 20.0% |
| !!! | AAGAAAATTTAGGATTTGTT+TGG | + | chr6_2:69215491-69215510 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTGGATAAAAAA+TGG | - | chr6_2:69217079-69217098 | Msa0925930:intron | 20.0% |
| !!! | ATTTTTTGAATGACCTTTAA+TGG | - | chr6_2:69217296-69217315 | Msa0925930:intron | 20.0% |
| !!! | GTAGTGTTAAATTTTGAAAT+AGG | + | chr6_2:69217444-69217463 | None:intergenic | 20.0% |
| !!! | TTTGCTGTTTCATAAATTTA+AGG | - | chr6_2:69217617-69217636 | Msa0925930:intron | 20.0% |
| !!! | TTGCTGTTTCATAAATTTAA+GGG | - | chr6_2:69217618-69217637 | Msa0925930:intron | 20.0% |
| !!! | TATTGAGTAAATAAGCATTT+TGG | + | chr6_2:69217676-69217695 | None:intergenic | 20.0% |
| !! | CTTATTTACTCAATACAATT+TGG | - | chr6_2:69217681-69217700 | Msa0925930:intron | 20.0% |
| !! | CTTTAGGTAAGATTAATAAA+AGG | + | chr6_2:69217737-69217756 | None:intergenic | 20.0% |
| ! | CATAGTTAAAGCGATTTAAT+CGG | + | chr6_2:69213714-69213733 | None:intergenic | 25.0% |
| ! | AACTTAATCGAGTGTTTAAT+CGG | - | chr6_2:69213879-69213898 | Msa0925930:CDS | 25.0% |
| ! | TTGTAAGTTATAAGCTCAAA+CGG | + | chr6_2:69214186-69214205 | None:intergenic | 25.0% |
| ! | GCAAAATTAATAGTTGAACT+AGG | - | chr6_2:69214293-69214312 | Msa0925930:intron | 25.0% |
| !!! | GTGTTGTTTTTGTTCATTTA+AGG | - | chr6_2:69214352-69214371 | Msa0925930:intron | 25.0% |
| !! | GTTACTAAACAGGTATATTT+TGG | + | chr6_2:69214705-69214724 | None:intergenic | 25.0% |
| ! | AATAAGATGTTTATCCAAAC+AGG | - | chr6_2:69215099-69215118 | Msa0925930:intron | 25.0% |
| !!! | CTGTTTTTGCATATGTTATA+AGG | - | chr6_2:69215159-69215178 | Msa0925930:intron | 25.0% |
| !!! | CAAACACAACATTTTGATAA+GGG | + | chr6_2:69215306-69215325 | None:intergenic | 25.0% |
| !!! | TCAAACACAACATTTTGATA+AGG | + | chr6_2:69215307-69215326 | None:intergenic | 25.0% |
| ! | AACAGCAAAATCATATGAAT+CGG | + | chr6_2:69215526-69215545 | None:intergenic | 25.0% |
| !!! | CTATCTTATCTTTTGAAACA+AGG | + | chr6_2:69215661-69215680 | None:intergenic | 25.0% |
| ! | CTTGTTTCAAAAGATAAGAT+AGG | - | chr6_2:69215659-69215678 | Msa0925930:intron | 25.0% |
| ! | AAAAGTCATAACATGTAACA+TGG | + | chr6_2:69215804-69215823 | None:intergenic | 25.0% |
| !! | ATGTTACATGTTATGACTTT+TGG | - | chr6_2:69215803-69215822 | Msa0925930:intron | 25.0% |
| ! | TGATGTAATTAGGTTACATT+GGG | + | chr6_2:69216327-69216346 | None:intergenic | 25.0% |
| ! | ATGATGTAATTAGGTTACAT+TGG | + | chr6_2:69216328-69216347 | None:intergenic | 25.0% |
| ! | ATTTGATTCCTAAAAAAGCA+GGG | + | chr6_2:69216514-69216533 | None:intergenic | 25.0% |
| ! | TTTGTCTGAATACTTTCATT+GGG | - | chr6_2:69216849-69216868 | Msa0925930:intron | 25.0% |
| !!! | TGATGTATTGGTATTGATTT+TGG | - | chr6_2:69216886-69216905 | Msa0925930:intron | 25.0% |
| ! | AAGTCATATCATTCCATTAA+AGG | + | chr6_2:69217312-69217331 | None:intergenic | 25.0% |
| ! | TCCTTTAAATTGATCAATGT+CGG | - | chr6_2:69217409-69217428 | Msa0925930:intron | 25.0% |
| !!! | TTATGAACGAGATATTTTGA+TGG | - | chr6_2:69217553-69217572 | Msa0925930:intron | 25.0% |
| !! | GATTAAGGCTCTTTAATTTA+AGG | - | chr6_2:69217588-69217607 | Msa0925930:intron | 25.0% |
| ! | TAATAAAAGGACATGTAATG+TGG | + | chr6_2:69217724-69217743 | None:intergenic | 25.0% |
| ! | AACAGATGAATTTGACTATT+TGG | - | chr6_2:69217847-69217866 | Msa0925930:intron | 25.0% |
| ! | GCTTACTTACTATTTGATTA+AGG | - | chr6_2:69218112-69218131 | Msa0925930:intron | 25.0% |
| ! | ACTTACTATTTGATTAAGGT+AGG | - | chr6_2:69218116-69218135 | Msa0925930:intron | 25.0% |
| CTGTGTTCGTTAAAAATCAA+TGG | - | chr6_2:69214228-69214247 | Msa0925930:intron | 30.0% | |
| ! | ATGATTGAATCTAGAGTGTT+TGG | - | chr6_2:69214271-69214290 | Msa0925930:intron | 30.0% |
| TGTTTAGTTAAGGTTCTGTT+TGG | - | chr6_2:69214624-69214643 | Msa0925930:intron | 30.0% | |
| AAAAACAGCAGTTACTAAAC+AGG | + | chr6_2:69214715-69214734 | None:intergenic | 30.0% | |
| ! | TATCATGTATAAGCTGACTT+AGG | - | chr6_2:69214811-69214830 | Msa0925930:CDS | 30.0% |
| ! | ATCATGTATAAGCTGACTTA+GGG | - | chr6_2:69214812-69214831 | Msa0925930:CDS | 30.0% |
| TCTTGCTTATAAAGCCAATT+TGG | - | chr6_2:69214967-69214986 | Msa0925930:CDS | 30.0% | |
| ! | TTTTTGTACATGCTCCAAAT+TGG | + | chr6_2:69214984-69215003 | None:intergenic | 30.0% |
| ATTTGTTTGGTAGAAACTAG+CGG | + | chr6_2:69215478-69215497 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGCTTTTCAGCTTA+AGG | - | chr6_2:69215556-69215575 | Msa0925930:intron | 30.0% |
| TAAAGATGTTGTCCAAAGTT+TGG | - | chr6_2:69215625-69215644 | Msa0925930:intron | 30.0% | |
| AAAAGATAAGATAGGCACTT+CGG | - | chr6_2:69215667-69215686 | Msa0925930:intron | 30.0% | |
| TTGTTCATTTCATCCAAACA+AGG | + | chr6_2:69215829-69215848 | None:intergenic | 30.0% | |
| TATAAGCTACAAACCACTTA+TGG | - | chr6_2:69215994-69216013 | Msa0925930:intron | 30.0% | |
| TTTGGAAGAGCTTATGAATA+TGG | + | chr6_2:69216032-69216051 | None:intergenic | 30.0% | |
| TGCATTGTCCCTATTTAAAT+TGG | + | chr6_2:69216097-69216116 | None:intergenic | 30.0% | |
| TAGGAGCAATAATCAATTAG+AGG | + | chr6_2:69216157-69216176 | None:intergenic | 30.0% | |
| CCAACATATCAACATAAAGA+TGG | + | chr6_2:69216272-69216291 | None:intergenic | 30.0% | |
| CCATCTTTATGTTGATATGT+TGG | - | chr6_2:69216269-69216288 | Msa0925930:intron | 30.0% | |
| TTACATTGGGATACAATAGA+GGG | + | chr6_2:69216314-69216333 | None:intergenic | 30.0% | |
| GTGTTTGCAATGATGTAATT+AGG | + | chr6_2:69216337-69216356 | None:intergenic | 30.0% | |
| CATTTGATTCCTAAAAAAGC+AGG | + | chr6_2:69216515-69216534 | None:intergenic | 30.0% | |
| !!! | CTGCTTTTTTAGGAATCAAA+TGG | - | chr6_2:69216513-69216532 | Msa0925930:intron | 30.0% |
| !!! | TTTTTTAGGAATCAAATGGC+TGG | - | chr6_2:69216517-69216536 | Msa0925930:intron | 30.0% |
| ! | AATGGCTTTTAAATCTGCTA+GGG | + | chr6_2:69216603-69216622 | None:intergenic | 30.0% |
| TTCTTAACTCATTGCTTCAA+AGG | + | chr6_2:69216778-69216797 | None:intergenic | 30.0% | |
| GTTTGTCTGAATACTTTCAT+TGG | - | chr6_2:69216848-69216867 | Msa0925930:intron | 30.0% | |
| !! | CTCATTTTGGTACTATATGA+TGG | - | chr6_2:69217039-69217058 | Msa0925930:intron | 30.0% |
| !!! | ATATTTTCACTCTGAAGCAA+TGG | - | chr6_2:69217110-69217129 | Msa0925930:intron | 30.0% |
| TGTAACTCATATCCAGTTAT+TGG | - | chr6_2:69217229-69217248 | Msa0925930:intron | 30.0% | |
| ATTGATCAATGCTTACGATT+TGG | + | chr6_2:69217358-69217377 | None:intergenic | 30.0% | |
| ACCGACATTGATCAATTTAA+AGG | + | chr6_2:69217413-69217432 | None:intergenic | 30.0% | |
| TCAATATGCATGTCTTTCAT+TGG | - | chr6_2:69217517-69217536 | Msa0925930:intron | 30.0% | |
| TATTTAATCAGCTACTGCTT+TGG | + | chr6_2:69217891-69217910 | None:intergenic | 30.0% | |
| GTAGCTGATTAAATATTGCT+TGG | - | chr6_2:69217896-69217915 | Msa0925930:intron | 30.0% | |
| TCTACAAAAGAGGATTTCAA+TGG | + | chr6_2:69217998-69218017 | None:intergenic | 30.0% | |
| TTGATTAAGGTAGGTATTAC+TGG | - | chr6_2:69218125-69218144 | Msa0925930:intron | 30.0% | |
| TTGATTCAGTCGAAGAAAAG+AGG | - | chr6_2:69213940-69213959 | Msa0925930:intron | 35.0% | |
| GAAGAAAAGAGGACTTTCAT+TGG | - | chr6_2:69213951-69213970 | Msa0925930:intron | 35.0% | |
| CGAATCTCAAGATTTCTTTC+TGG | - | chr6_2:69214008-69214027 | Msa0925930:intron | 35.0% | |
| TGTTTAGTTAGAGTCCTGTT+TGG | - | chr6_2:69214095-69214114 | Msa0925930:intron | 35.0% | |
| CAAATTTAACCTCACCAAAC+AGG | + | chr6_2:69214112-69214131 | None:intergenic | 35.0% | |
| ! | CTGTTTGGTGAGGTTAAATT+TGG | - | chr6_2:69214110-69214129 | Msa0925930:intron | 35.0% |
| TGACACTCACATGTTAACAT+CGG | - | chr6_2:69214413-69214432 | Msa0925930:intron | 35.0% | |
| CTTATGATAGAAGCCGTATT+CGG | + | chr6_2:69214505-69214524 | None:intergenic | 35.0% | |
| TTATACATGATAAGCGCATG+TGG | + | chr6_2:69214803-69214822 | None:intergenic | 35.0% | |
| AAATAAGCCAATCCAAACAG+GGG | + | chr6_2:69214838-69214857 | None:intergenic | 35.0% | |
| CAAATAAGCCAATCCAAACA+GGG | + | chr6_2:69214839-69214858 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr6_2:69214840-69214859 | None:intergenic | 35.0% | |
| TTGAGCTTATCAACTGACAT+AGG | - | chr6_2:69214856-69214875 | Msa0925930:intron | 35.0% | |
| ! | GGTGTTTTCATAAGCTATCT+TGG | - | chr6_2:69215180-69215199 | Msa0925930:intron | 35.0% |
| GAACTATATACAAGCATCAG+CGG | + | chr6_2:69215709-69215728 | None:intergenic | 35.0% | |
| CTTGTATTATTGTCCCTGTA+TGG | - | chr6_2:69215728-69215747 | Msa0925930:intron | 35.0% | |
| AAACTGAAACAGTCCATACA+GGG | + | chr6_2:69215744-69215763 | None:intergenic | 35.0% | |
| TAAACTGAAACAGTCCATAC+AGG | + | chr6_2:69215745-69215764 | None:intergenic | 35.0% | |
| !!! | TTATGACTTTTGGCCTTGTT+TGG | - | chr6_2:69215813-69215832 | Msa0925930:intron | 35.0% |
| CGAAAAATGCTTAGATTTGC+TGG | - | chr6_2:69216120-69216139 | Msa0925930:CDS | 35.0% | |
| GAAATCAGGTGAACTTCTAT+TGG | - | chr6_2:69216220-69216239 | Msa0925930:intron | 35.0% | |
| GTTACATTGGGATACAATAG+AGG | + | chr6_2:69216315-69216334 | None:intergenic | 35.0% | |
| CCTAAAAAAGCAGGGAAAAT+TGG | + | chr6_2:69216506-69216525 | None:intergenic | 35.0% | |
| !!! | CCAATTTTCCCTGCTTTTTT+AGG | - | chr6_2:69216503-69216522 | Msa0925930:intron | 35.0% |
| !!! | TTTTTAGGATGAACGAGAAG+CGG | - | chr6_2:69216577-69216596 | Msa0925930:intron | 35.0% |
| ! | GAATGGCTTTTAAATCTGCT+AGG | + | chr6_2:69216604-69216623 | None:intergenic | 35.0% |
| TCATCATGACACTGATGTAT+TGG | - | chr6_2:69216874-69216893 | Msa0925930:intron | 35.0% | |
| !!! | ATTGGTATTGATTTTGGCAG+AGG | - | chr6_2:69216892-69216911 | Msa0925930:intron | 35.0% |
| AACTGAAATGACTAACCTCT+TGG | + | chr6_2:69217183-69217202 | None:intergenic | 35.0% | |
| AACTGGATATGAGTTACACA+CGG | + | chr6_2:69217227-69217246 | None:intergenic | 35.0% | |
| !!! | TGAACGAGATATTTTGATGG+AGG | - | chr6_2:69217556-69217575 | Msa0925930:intron | 35.0% |
| !!! | GAACGAGATATTTTGATGGA+GGG | - | chr6_2:69217557-69217576 | Msa0925930:intron | 35.0% |
| TGGAGGGACTAAATTGATTA+AGG | - | chr6_2:69217573-69217592 | Msa0925930:intron | 35.0% | |
| TTTGGTCCTCGAAATTGTAA+AGG | + | chr6_2:69217658-69217677 | None:intergenic | 35.0% | |
| ATCACGTATAGCTATGCTTT+AGG | + | chr6_2:69217753-69217772 | None:intergenic | 35.0% | |
| ATCTGTTATACCAATCTGCA+TGG | + | chr6_2:69217834-69217853 | None:intergenic | 35.0% | |
| ! | AAGGCATTTCTCTACAAAAG+AGG | + | chr6_2:69218008-69218027 | None:intergenic | 35.0% |
| CAGCAAGAGAGAAAAATACA+AGG | + | chr6_2:69218027-69218046 | None:intergenic | 35.0% | |
| TTGCTGTCTTAATCTGGATT+AGG | - | chr6_2:69218041-69218060 | Msa0925930:intron | 35.0% | |
| TGCAATTGCAGAAGCTATGA+AGG | + | chr6_2:69213773-69213792 | None:intergenic | 40.0% | |
| ! | TTGCATGTGTTGATGTGTGT+CGG | - | chr6_2:69214470-69214489 | Msa0925930:intron | 40.0% |
| ACGGCTTCTATCATAAGTGT+CGG | - | chr6_2:69214508-69214527 | Msa0925930:intron | 40.0% | |
| !! | CATAAGTGTCGGTGATATAG+AGG | - | chr6_2:69214519-69214538 | Msa0925930:intron | 40.0% |
| !! | GACATGCTACTTGCTATGTT+TGG | - | chr6_2:69214757-69214776 | Msa0925930:intron | 40.0% |
| !! | ATAGGTTTTGTGAGACTGCT+TGG | - | chr6_2:69214874-69214893 | Msa0925930:intron | 40.0% |
| !! | TAGGTTTTGTGAGACTGCTT+GGG | - | chr6_2:69214875-69214894 | Msa0925930:intron | 40.0% |
| AAATAGCTTAAGGGCCTGTT+TGG | + | chr6_2:69215116-69215135 | None:intergenic | 40.0% | |
| CTTAAGGAGCTTGAGAAGAT+GGG | - | chr6_2:69215572-69215591 | Msa0925930:intron | 40.0% | |
| TGACTAATCACACCCTTCTT+GGG | + | chr6_2:69215599-69215618 | None:intergenic | 40.0% | |
| AGATGTTGTCCAAAGTTTGG+TGG | - | chr6_2:69215628-69215647 | Msa0925930:intron | 40.0% | |
| GTTTATGACACGTCCATAAG+TGG | + | chr6_2:69216010-69216029 | None:intergenic | 40.0% | |
| TAAACACACGCGAGATTGTT+TGG | + | chr6_2:69216050-69216069 | None:intergenic | 40.0% | |
| AGTATACCTGAGGCAAACAT+AGG | + | chr6_2:69216176-69216195 | None:intergenic | 40.0% | |
| TGGGATACAATAGAGGGAAA+GGG | + | chr6_2:69216308-69216327 | None:intergenic | 40.0% | |
| TTGGGATACAATAGAGGGAA+AGG | + | chr6_2:69216309-69216328 | None:intergenic | 40.0% | |
| GATTCTGAACTGCAAAACAG+TGG | - | chr6_2:69216390-69216409 | Msa0925930:intron | 40.0% | |
| AACTGCAAAACAGTGGTACA+CGG | - | chr6_2:69216397-69216416 | Msa0925930:intron | 40.0% | |
| ! | CAATGTGAGGCACTAAAGAA+GGG | - | chr6_2:69216438-69216457 | Msa0925930:intron | 40.0% |
| AAATTGGCATCTGGTAGAAG+AGG | + | chr6_2:69216490-69216509 | None:intergenic | 40.0% | |
| ! | AAGCATAACGAGTTGAAGGT+TGG | - | chr6_2:69216629-69216648 | Msa0925930:intron | 40.0% |
| TTGTCACCTGTATTGTGTCT+AGG | - | chr6_2:69216986-69217005 | Msa0925930:intron | 40.0% | |
| ACCTGTATTGTGTCTAGGAA+GGG | - | chr6_2:69216991-69217010 | Msa0925930:intron | 40.0% | |
| GCTTCAGAACATTTACCAAG+AGG | - | chr6_2:69217165-69217184 | Msa0925930:intron | 40.0% | |
| ACTGGATATGAGTTACACAC+GGG | + | chr6_2:69217226-69217245 | None:intergenic | 40.0% | |
| !!! | TCCAGTTATTGGCCTTCTTT+TGG | - | chr6_2:69217240-69217259 | Msa0925930:intron | 40.0% |
| ACCAAAAGAAGGCCAATAAC+TGG | + | chr6_2:69217244-69217263 | None:intergenic | 40.0% | |
| !!! | TATTGGCCTTCTTTTGGTTC+TGG | - | chr6_2:69217246-69217265 | Msa0925930:intron | 40.0% |
| ACTATGCCAGAACCAAAAGA+AGG | + | chr6_2:69217255-69217274 | None:intergenic | 40.0% | |
| TTCTGGCATAGTTGCATCAA+TGG | - | chr6_2:69217263-69217282 | Msa0925930:intron | 40.0% | |
| ! | GATCAATGCTTACGATTTGG+AGG | + | chr6_2:69217355-69217374 | None:intergenic | 40.0% |
| GTCCTCGAAATTGTAAAGGT+CGG | + | chr6_2:69217654-69217673 | None:intergenic | 40.0% | |
| ATGTTTCTCACCATGCAGAT+TGG | - | chr6_2:69217821-69217840 | Msa0925930:intron | 40.0% | |
| ! | TAATCAGCTACTGCTTTGGA+TGG | + | chr6_2:69217887-69217906 | None:intergenic | 40.0% |
| TTCAGTGTTTGAGAGAAGCA+TGG | + | chr6_2:69217950-69217969 | None:intergenic | 40.0% | |
| ! | TCTCTCTTGCTGTCTTAATC+TGG | - | chr6_2:69218035-69218054 | Msa0925930:intron | 40.0% |
| ATGATCGGAAGAGAAGAAGC+AGG | + | chr6_2:69213603-69213622 | None:intergenic | 45.0% | |
| AACGCGCGTTGAGAAATGAT+CGG | + | chr6_2:69213618-69213637 | None:intergenic | 45.0% | |
| ! | AGTTAGAGTCCTGTTTGGTG+AGG | - | chr6_2:69214100-69214119 | Msa0925930:intron | 45.0% |
| GCTTAAGGAGCTTGAGAAGA+TGG | - | chr6_2:69215571-69215590 | Msa0925930:intron | 45.0% | |
| GACTAATCACACCCTTCTTG+GGG | + | chr6_2:69215598-69215617 | None:intergenic | 45.0% | |
| CTGACTAATCACACCCTTCT+TGG | + | chr6_2:69215600-69215619 | None:intergenic | 45.0% | |
| GGTCATCATCCACCAAACTT+TGG | + | chr6_2:69215640-69215659 | None:intergenic | 45.0% | |
| ATTGCTCCTATGTTTGCCTC+AGG | - | chr6_2:69216167-69216186 | Msa0925930:intron | 45.0% | |
| GTTTGCCTCAGGTATACTTC+TGG | - | chr6_2:69216178-69216197 | Msa0925930:intron | 45.0% | |
| ! | AGACTCCAGAAGTATACCTG+AGG | + | chr6_2:69216186-69216205 | None:intergenic | 45.0% |
| CTCACATTGCTCGACAAGTT+GGG | + | chr6_2:69216427-69216446 | None:intergenic | 45.0% | |
| ! | GCAATGTGAGGCACTAAAGA+AGG | - | chr6_2:69216437-69216456 | Msa0925930:intron | 45.0% |
| AAGCAGGGAAAATTGGCATC+TGG | + | chr6_2:69216499-69216518 | None:intergenic | 45.0% | |
| CTCGTTATGCTTCAGCTGAA+TGG | + | chr6_2:69216621-69216640 | None:intergenic | 45.0% | |
| ! | GCTGAAGCATAACGAGTTGA+AGG | - | chr6_2:69216625-69216644 | Msa0925930:intron | 45.0% |
| CACCTGTATTGTGTCTAGGA+AGG | - | chr6_2:69216990-69217009 | Msa0925930:intron | 45.0% | |
| TCCCTTCCTAGACACAATAC+AGG | + | chr6_2:69216995-69217014 | None:intergenic | 45.0% | |
| GTGTTCAAAGAACTTCCCTC+AGG | - | chr6_2:69217132-69217151 | Msa0925930:intron | 45.0% | |
| AAAGAACTTCCCTCAGGCTA+AGG | - | chr6_2:69217138-69217157 | Msa0925930:intron | 45.0% | |
| CTGGATATGAGTTACACACG+GGG | + | chr6_2:69217225-69217244 | None:intergenic | 45.0% | |
| GACCGACCTTTACAATTTCG+AGG | - | chr6_2:69217649-69217668 | Msa0925930:intron | 45.0% | |
| ! | TGAGAGAAGCATGGCAACAA+GGG | + | chr6_2:69217941-69217960 | None:intergenic | 45.0% |
| ! | TTGAGAGAAGCATGGCAACA+AGG | + | chr6_2:69217942-69217961 | None:intergenic | 45.0% |
| !!! | ATTTTTTTTTTTGTAAATTA+TGG | - | chr6_2:69214205-69214224 | Msa0925930:intron | 5.0% |
| !!! | ATTTTTTTTTTTTTCTTTTT+AGG | - | chr6_2:69216562-69216581 | Msa0925930:intron | 5.0% |
| !! | AGGTCTATGAAGCACCGACA+CGG | - | chr6_2:69214372-69214391 | Msa0925930:intron | 50.0% |
| ! | GTGTTGATGTGTGTCGGTGT+CGG | - | chr6_2:69214476-69214495 | Msa0925930:intron | 50.0% |
| GCAAACACGATGTGCAGCTT+AGG | - | chr6_2:69216349-69216368 | Msa0925930:intron | 50.0% | |
| CCTCACATTGCTCGACAAGT+TGG | + | chr6_2:69216428-69216447 | None:intergenic | 50.0% | |
| CCAACTTGTCGAGCAATGTG+AGG | - | chr6_2:69216425-69216444 | Msa0925930:intron | 50.0% | |
| CTCATTGCTTCAAAGGCAGC+AGG | + | chr6_2:69216771-69216790 | None:intergenic | 50.0% | |
| CTCATGCAGCAGCTAACAGA+TGG | - | chr6_2:69216930-69216949 | Msa0925930:intron | 50.0% | |
| TTGTGTCTAGGAAGGGAGAG+TGG | - | chr6_2:69216998-69217017 | Msa0925930:intron | 50.0% | |
| GAAGCTGTTCCTTAGCCTGA+GGG | + | chr6_2:69217150-69217169 | None:intergenic | 50.0% | |
| TGAAGCTGTTCCTTAGCCTG+AGG | + | chr6_2:69217151-69217170 | None:intergenic | 50.0% | |
| ! | GCTACTGCTTTGGATGGAAG+AGG | + | chr6_2:69217881-69217900 | None:intergenic | 50.0% |
| ! | GAGAGAAGCATGGCAACAAG+GGG | + | chr6_2:69217940-69217959 | None:intergenic | 50.0% |
| !! | TCGGTGTCGGACACCGAATA+CGG | - | chr6_2:69214489-69214508 | Msa0925930:intron | 55.0% |
| CTTAGGGCCCCTGTTTGGAT+TGG | - | chr6_2:69214828-69214847 | Msa0925930:intron | 55.0% | |
| TGAGAAGATGGGCCCCAAGA+AGG | - | chr6_2:69215583-69215602 | Msa0925930:intron | 55.0% | |
| GAGAAGATGGGCCCCAAGAA+GGG | - | chr6_2:69215584-69215603 | Msa0925930:intron | 55.0% | |
| TCCTAGCTGCGCTGGAAATC+AGG | - | chr6_2:69216206-69216225 | Msa0925930:intron | 55.0% | |
| ACCTGATTTCCAGCGCAGCT+AGG | + | chr6_2:69216210-69216229 | None:intergenic | 55.0% | |
| GGCACTAAAGAAGGGACGTG+AGG | - | chr6_2:69216446-69216465 | Msa0925930:intron | 55.0% | |
| GCAGCAGCTAACAGATGGAC+AGG | - | chr6_2:69216935-69216954 | Msa0925930:intron | 55.0% | |
| CACACGGGGATTGCAGATTG+AGG | + | chr6_2:69217211-69217230 | None:intergenic | 55.0% | |
| AGCATGGCAACAAGGGGACT+GGG | + | chr6_2:69217934-69217953 | None:intergenic | 55.0% | |
| AAGCATGGCAACAAGGGGAC+TGG | + | chr6_2:69217935-69217954 | None:intergenic | 55.0% | |
| !! | GAAGCACCGACACGGACACA+CGG | - | chr6_2:69214380-69214399 | Msa0925930:intron | 60.0% |
| CTGTGTCCGTGTGTCCGTGT+CGG | + | chr6_2:69214389-69214408 | None:intergenic | 60.0% | |
| ! | GCTGACTTAGGGCCCCTGTT+TGG | - | chr6_2:69214823-69214842 | Msa0925930:intron | 60.0% |
| TGGAGTCTTCCTAGCTGCGC+TGG | - | chr6_2:69216198-69216217 | Msa0925930:intron | 60.0% | |
| CGACACGGACACACGGACAC+AGG | - | chr6_2:69214387-69214406 | Msa0925930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 69213593 | 69218154 | 69213593 | ID=Msa0925930;Name=Msa0925930 |
| chr6_2 | mRNA | 69213593 | 69218154 | 69213593 | ID=Msa0925930-mRNA-1;Parent=Msa0925930;Name=Msa0925930-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.9|0.81|0.90|0.9|0.81|11|199|218 |
| chr6_2 | exon | 69213593 | 69213748 | 69213593 | ID=Msa0925930-mRNA-1:exon:11194;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69213797 | 69213908 | 69213797 | ID=Msa0925930-mRNA-1:exon:11193;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69214561 | 69214640 | 69214561 | ID=Msa0925930-mRNA-1:exon:11192;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69214791 | 69214835 | 69214791 | ID=Msa0925930-mRNA-1:exon:11191;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69214958 | 69215009 | 69214958 | ID=Msa0925930-mRNA-1:exon:11190;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69215101 | 69215163 | 69215101 | ID=Msa0925930-mRNA-1:exon:11189;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69215274 | 69215381 | 69215274 | ID=Msa0925930-mRNA-1:exon:11188;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69215520 | 69215558 | 69215520 | ID=Msa0925930-mRNA-1:exon:11187;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69216059 | 69216175 | 69216059 | ID=Msa0925930-mRNA-1:exon:11186;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69217718 | 69217798 | 69217718 | ID=Msa0925930-mRNA-1:exon:11185;Parent=Msa0925930-mRNA-1 |
| chr6_2 | exon | 69218152 | 69218154 | 69218152 | ID=Msa0925930-mRNA-1:exon:11184;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69218152 | 69218154 | 69218152 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69217718 | 69217798 | 69217718 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69216059 | 69216175 | 69216059 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69215520 | 69215558 | 69215520 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69215274 | 69215381 | 69215274 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69215101 | 69215163 | 69215101 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69214958 | 69215009 | 69214958 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69214791 | 69214835 | 69214791 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69214561 | 69214640 | 69214561 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | CDS | 69213840 | 69213908 | 69213840 | ID=Msa0925930-mRNA-1:cds;Parent=Msa0925930-mRNA-1 |
| chr6_2 | three_prime_UTR | 69213797 | 69213839 | 69213797 | ID=Msa0925930-mRNA-1:three_prime_utr;Parent=Msa0925930-mRNA-1 |
| chr6_2 | three_prime_UTR | 69213593 | 69213748 | 69213593 | ID=Msa0925930-mRNA-1:three_prime_utr;Parent=Msa0925930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
