Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966910 | XP_003620757.1 | 94.048 | 252 | 14 | 1 | 80 | 330 | 1 | 252 | 1.48e-165 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966910 | sp|P27061|PPA1_SOLLC | 55.189 | 212 | 95 | 0 | 118 | 329 | 43 | 254 | 2.98e-87 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0901830 | Msa0966910 | 0.912257 | 2.394676e-83 | -8.615850e-47 |
| Msa0966910 | Msa1036350 | -0.804445 | 2.152481e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966910 | MtrunA17_Chr6g0487381 | 94.048 | 252 | 14 | 1 | 80 | 330 | 1 | 252 | 1.36e-169 | 471 |
| Msa0966910 | MtrunA17_Chr8g0356021 | 58.216 | 213 | 89 | 0 | 118 | 330 | 47 | 259 | 3.35e-86 | 260 |
| Msa0966910 | MtrunA17_Chr8g0340811 | 49.065 | 214 | 107 | 2 | 118 | 330 | 52 | 264 | 1.03e-71 | 223 |
| Msa0966910 | MtrunA17_Chr8g0340821 | 49.065 | 214 | 107 | 2 | 118 | 330 | 49 | 261 | 6.67e-69 | 216 |
| Msa0966910 | MtrunA17_Chr8g0340031 | 44.186 | 215 | 119 | 1 | 116 | 329 | 35 | 249 | 5.58e-62 | 197 |
| Msa0966910 | MtrunA17_Chr1g0168451 | 41.204 | 216 | 126 | 1 | 116 | 330 | 51 | 266 | 1.86e-59 | 192 |
| Msa0966910 | MtrunA17_Chr8g0334461 | 44.796 | 221 | 115 | 3 | 117 | 330 | 67 | 287 | 6.13e-56 | 183 |
| Msa0966910 | MtrunA17_Chr1g0186301 | 37.154 | 253 | 149 | 5 | 83 | 330 | 15 | 262 | 8.03e-56 | 182 |
| Msa0966910 | MtrunA17_Chr8g0340021 | 44.615 | 130 | 71 | 1 | 201 | 329 | 23 | 152 | 2.90e-29 | 110 |
| Msa0966910 | MtrunA17_Chr7g0265641 | 50.000 | 104 | 51 | 1 | 204 | 306 | 6 | 109 | 1.85e-27 | 104 |
| Msa0966910 | MtrunA17_Chr8g0356651 | 44.330 | 97 | 50 | 2 | 118 | 211 | 50 | 145 | 1.44e-22 | 92.4 |
| Msa0966910 | MtrunA17_Chr3g0113091 | 28.151 | 238 | 165 | 4 | 86 | 323 | 58 | 289 | 1.48e-19 | 87.4 |
| Msa0966910 | MtrunA17_Chr5g0436371 | 26.761 | 213 | 145 | 3 | 116 | 326 | 84 | 287 | 1.24e-17 | 82.0 |
| Msa0966910 | MtrunA17_Chr8g0356661 | 53.846 | 52 | 24 | 0 | 277 | 328 | 4 | 55 | 5.20e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966910 | AT4G29260.1 | 57.143 | 238 | 99 | 2 | 92 | 329 | 20 | 254 | 4.26e-95 | 283 |
| Msa0966910 | AT4G29270.1 | 53.629 | 248 | 110 | 2 | 83 | 330 | 14 | 256 | 2.80e-93 | 278 |
| Msa0966910 | AT4G25150.1 | 53.521 | 213 | 99 | 0 | 117 | 329 | 47 | 259 | 3.25e-83 | 253 |
| Msa0966910 | AT5G51260.1 | 47.809 | 251 | 122 | 1 | 88 | 329 | 6 | 256 | 1.56e-82 | 251 |
| Msa0966910 | AT2G38600.2 | 42.629 | 251 | 142 | 2 | 80 | 329 | 1 | 250 | 2.34e-68 | 214 |
| Msa0966910 | AT2G38600.1 | 42.629 | 251 | 142 | 2 | 80 | 329 | 1 | 250 | 2.34e-68 | 214 |
| Msa0966910 | AT1G04040.1 | 43.636 | 220 | 116 | 3 | 117 | 330 | 54 | 271 | 1.77e-60 | 195 |
| Msa0966910 | AT5G44020.1 | 44.796 | 221 | 112 | 4 | 117 | 330 | 55 | 272 | 1.12e-59 | 193 |
| Msa0966910 | AT5G51260.2 | 42.784 | 194 | 102 | 1 | 88 | 272 | 6 | 199 | 2.45e-53 | 174 |
| Msa0966910 | AT5G24770.1 | 37.727 | 220 | 133 | 4 | 112 | 329 | 46 | 263 | 5.58e-46 | 157 |
| Msa0966910 | AT5G24780.1 | 36.916 | 214 | 131 | 4 | 118 | 329 | 57 | 268 | 1.31e-43 | 151 |
| Msa0966910 | AT5G24770.2 | 36.810 | 163 | 101 | 2 | 112 | 272 | 46 | 208 | 1.32e-31 | 118 |
| Msa0966910 | AT5G24780.2 | 35.669 | 157 | 99 | 2 | 118 | 272 | 57 | 213 | 1.53e-29 | 113 |
| Msa0966910 | AT2G39920.2 | 23.387 | 248 | 156 | 6 | 86 | 327 | 54 | 273 | 2.90e-11 | 63.5 |
Find 98 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTGCAGGGTACAGAAAT+TGG | 0.195305 | 6_3:-95762056 | Msa0966910:CDS |
| ACCAAATGACTTGCATTATT+AGG | 0.240875 | 6_3:-95761167 | Msa0966910:three_prime_UTR |
| TATTATCAAGATGTTGGATT+TGG | 0.260039 | 6_3:-95764634 | Msa0966910:CDS |
| GTGGTGATGGTAGGGATGCT+TGG | 0.270118 | 6_3:-95764696 | Msa0966910:CDS |
| CTATAGAAAGCTTCAAGAAT+TGG | 0.298535 | 6_3:-95762145 | Msa0966910:CDS |
| GAAGCAAACCTTCTATTTGC+AGG | 0.325914 | 6_3:-95762069 | Msa0966910:CDS |
| TTCTGTACCCTGCAAATAGA+AGG | 0.336018 | 6_3:+95762061 | None:intergenic |
| GCAATAAAATACATCGGATT+CGG | 0.350638 | 6_3:+95761361 | None:intergenic |
| ATGAGACATCCTTCAATGAT+TGG | 0.353304 | 6_3:-95762212 | Msa0966910:CDS |
| CGGATGGTTTGTGTTGAGAT+GGG | 0.365136 | 6_3:+95764922 | None:intergenic |
| ATTATCAAGATGTTGGATTT+GGG | 0.370529 | 6_3:-95764633 | Msa0966910:intron |
| TATAGAAAGCTTCAAGAATT+GGG | 0.370887 | 6_3:-95762144 | Msa0966910:CDS |
| ACCTAATAATGCAAGTCATT+TGG | 0.387252 | 6_3:+95761166 | None:intergenic |
| TGACGGTTGGTGGTGATGGT+AGG | 0.390241 | 6_3:-95764705 | Msa0966910:CDS |
| CAATAAAATACATCGGATTC+GGG | 0.407691 | 6_3:+95761362 | None:intergenic |
| GGCGAGTGGTGGAGATTTCC+CGG | 0.412163 | 6_3:+95765006 | None:intergenic |
| ATTTGCAGGGTACAGAAATT+GGG | 0.415081 | 6_3:-95762055 | Msa0966910:CDS |
| GCGGATGGTTTGTGTTGAGA+TGG | 0.427364 | 6_3:+95764921 | None:intergenic |
| CTCAAACTGGCAGGTAAAGC+TGG | 0.428025 | 6_3:+95762171 | None:intergenic |
| TGGTGATGGTAGGGATGCTT+GGG | 0.432736 | 6_3:-95764695 | Msa0966910:CDS |
| AACAGAGGCGCTTCTGATCA+AGG | 0.443646 | 6_3:-95761517 | Msa0966910:intron |
| ATTGTAAACAACAGGGCTAC+TGG | 0.453627 | 6_3:-95761266 | Msa0966910:three_prime_UTR |
| TTCACAATATTTCTCTTGAC+TGG | 0.456433 | 6_3:-95762120 | Msa0966910:CDS |
| ATTGATCTCCGGAGCTTCCA+TGG | 0.457548 | 6_3:+95761431 | None:intergenic |
| AATCCAACATCTTGATAATA+CGG | 0.457939 | 6_3:+95764637 | None:intergenic |
| CGGGCGACGGTTTCCATCGC+CGG | 0.458063 | 6_3:+95764985 | None:intergenic |
| CAAGGGTCGGGTTCAAACTC+TGG | 0.459947 | 6_3:-95765201 | Msa0966910:CDS |
| GAAGAGGAGGATTGTTAGCC+GGG | 0.467135 | 6_3:+95764966 | None:intergenic |
| ATGAAGGTTCGGAGGGGAGG+CGG | 0.467966 | 6_3:+95764902 | None:intergenic |
| GAAGAGATGTGTGGAGTTTG+TGG | 0.470043 | 6_3:-95764806 | Msa0966910:CDS |
| TCTCCAGCTGTCGCAGTATG+AGG | 0.472536 | 6_3:+95764873 | None:intergenic |
| TGAGACATCCTTCAATGATT+GGG | 0.473096 | 6_3:-95762211 | Msa0966910:CDS |
| AAACGAACAACGTCGGAGAA+TGG | 0.476433 | 6_3:-95764840 | Msa0966910:CDS |
| TGAGATGGATTGTGAGGTGG+TGG | 0.477904 | 6_3:-95764758 | Msa0966910:CDS |
| ATTGGGAGAGACTCATCTTA+AGG | 0.482164 | 6_3:-95762038 | Msa0966910:intron |
| GGTGTGACGGTTGGTGGTGA+TGG | 0.485556 | 6_3:-95764709 | Msa0966910:CDS |
| TACAGAATCCATGGAAGCTC+CGG | 0.485826 | 6_3:-95761439 | Msa0966910:CDS |
| GAGATCAATGGAGTGATTTG+TGG | 0.489764 | 6_3:-95761417 | Msa0966910:CDS |
| TGAGGTGGAGAATGAAGGTT+CGG | 0.491283 | 6_3:+95764891 | None:intergenic |
| ACAAACTCCACACATCTCTT+CGG | 0.492260 | 6_3:+95764808 | None:intergenic |
| GACGGTTGGTGGTGATGGTA+GGG | 0.492809 | 6_3:-95764704 | Msa0966910:CDS |
| GCGAAAGGTGTGACGGTTGG+TGG | 0.493522 | 6_3:-95764715 | Msa0966910:CDS |
| CTTTCTATAGAAACTCAAAC+TGG | 0.494167 | 6_3:+95762158 | None:intergenic |
| AGATCAATGGAGTGATTTGT+GGG | 0.501247 | 6_3:-95761416 | Msa0966910:CDS |
| CCACCTCATACTGCGACAGC+TGG | 0.503575 | 6_3:-95764876 | Msa0966910:CDS |
| GTGCCGTATTATCAAGATGT+TGG | 0.504430 | 6_3:-95764640 | Msa0966910:CDS |
| TATAGATATATGCAAGGGTC+GGG | 0.504987 | 6_3:-95765213 | Msa0966910:CDS |
| GTGGAGAATGAAGGTTCGGA+GGG | 0.506528 | 6_3:+95764895 | None:intergenic |
| TAAGTTTACCCAATCATTGA+AGG | 0.506625 | 6_3:+95762203 | None:intergenic |
| TCTCCACCACTCGCCGGCGA+TGG | 0.516471 | 6_3:-95764998 | Msa0966910:CDS |
| TTTCCATCGCCGGCGAGTGG+TGG | 0.517034 | 6_3:+95764995 | None:intergenic |
| ATGGAAGCTCCGGAGATCAA+TGG | 0.520805 | 6_3:-95761429 | Msa0966910:CDS |
| ATGAGGAGATGATGAAGAGG+AGG | 0.523968 | 6_3:+95764953 | None:intergenic |
| AGATGGATTGTGAGGTGGTG+GGG | 0.528294 | 6_3:-95764756 | Msa0966910:CDS |
| CGGCGATGGAAACCGTCGCC+CGG | 0.531949 | 6_3:-95764984 | Msa0966910:CDS |
| CTATAGAAACTCAAACTGGC+AGG | 0.535607 | 6_3:+95762162 | None:intergenic |
| CAGTATGAGGTGGAGAATGA+AGG | 0.542531 | 6_3:+95764886 | None:intergenic |
| GATTCGGGAGTTTAAAAGAC+CGG | 0.545316 | 6_3:+95761377 | None:intergenic |
| CAAATCACTCCATTGATCTC+CGG | 0.546234 | 6_3:+95761420 | None:intergenic |
| TGAAGAGGAGGATTGTTAGC+CGG | 0.549275 | 6_3:+95764965 | None:intergenic |
| AGGTTCGGAGGGGAGGCGGA+TGG | 0.552950 | 6_3:+95764906 | None:intergenic |
| AGTGAAGGCTACAGAATCCA+TGG | 0.553055 | 6_3:-95761448 | Msa0966910:CDS |
| TCGATGAGGAGATGATGAAG+AGG | 0.553957 | 6_3:+95764950 | None:intergenic |
| GCTTAACACACGAATTGAGA+TGG | 0.554819 | 6_3:-95761340 | Msa0966910:exon |
| GGATGGTTTGTGTTGAGATG+GGG | 0.555142 | 6_3:+95764923 | None:intergenic |
| AGAATGAAGGTTCGGAGGGG+AGG | 0.565022 | 6_3:+95764899 | None:intergenic |
| GTATAGATATATGCAAGGGT+CGG | 0.565361 | 6_3:-95765214 | Msa0966910:CDS |
| ACAGAGGCGCTTCTGATCAA+GGG | 0.566481 | 6_3:-95761516 | Msa0966910:intron |
| GAGGATTGTTAGCCGGGCGA+CGG | 0.568649 | 6_3:+95764972 | None:intergenic |
| TGGTTTGTGTTGAGATGGGG+TGG | 0.568939 | 6_3:+95764926 | None:intergenic |
| CTGCGACAGCTGGAGATTAG+CGG | 0.573560 | 6_3:-95764866 | Msa0966910:CDS |
| AAAACACAATCTGATTTAGA+GGG | 0.574576 | 6_3:+95765115 | None:intergenic |
| AAGCAAACCTTCTATTTGCA+GGG | 0.580119 | 6_3:-95762068 | Msa0966910:CDS |
| CGACAAGAGTTGATGAGTGA+AGG | 0.580906 | 6_3:-95761463 | Msa0966910:CDS |
| ATTCGGGAGTTTAAAAGACC+GGG | 0.584061 | 6_3:+95761378 | None:intergenic |
| GGGAAATCTCCACCACTCGC+CGG | 0.585339 | 6_3:-95765004 | Msa0966910:CDS |
| CGGTTTCCATCGCCGGCGAG+TGG | 0.587423 | 6_3:+95764992 | None:intergenic |
| GAGATGGATTGTGAGGTGGT+GGG | 0.588133 | 6_3:-95764757 | Msa0966910:CDS |
| GGCAGGTAAAGCTGGTGCAT+CGG | 0.602641 | 6_3:+95762179 | None:intergenic |
| CCAGCTGTCGCAGTATGAGG+TGG | 0.608859 | 6_3:+95764876 | None:intergenic |
| TTTGCGAAAGGTGTGACGGT+TGG | 0.609323 | 6_3:-95764718 | Msa0966910:CDS |
| GGTGGAGAATGAAGGTTCGG+AGG | 0.612292 | 6_3:+95764894 | None:intergenic |
| ACAATGTATAGATATATGCA+AGG | 0.620631 | 6_3:-95765219 | Msa0966910:CDS |
| GGGGTTATGCAGTATCCACC+CGG | 0.631601 | 6_3:-95761396 | Msa0966910:CDS |
| TGTTAAGCAATAAAATACAT+CGG | 0.634647 | 6_3:+95761355 | None:intergenic |
| TTTGTGGCGGAGTATATGAT+CGG | 0.640485 | 6_3:-95764790 | Msa0966910:CDS |
| TGGAGAATGAAGGTTCGGAG+GGG | 0.642057 | 6_3:+95764896 | None:intergenic |
| CGAAACCAAACAAAACTCGC+CGG | 0.649394 | 6_3:-95765039 | Msa0966910:CDS |
| GCAGATTCCGAAGAGATGTG+TGG | 0.649485 | 6_3:-95764815 | Msa0966910:CDS |
| AAAATATGAGATGGATTGTG+AGG | 0.649506 | 6_3:-95764764 | Msa0966910:CDS |
| TGAGTTTGCGAAAGGTGTGA+CGG | 0.667860 | 6_3:-95764722 | Msa0966910:CDS |
| CGGGAGTTTAAAAGACCGGG+TGG | 0.680725 | 6_3:+95761381 | None:intergenic |
| CAATGTATAGATATATGCAA+GGG | 0.689927 | 6_3:-95765218 | Msa0966910:CDS |
| TGAGATGGGGTGGATCGATG+AGG | 0.693959 | 6_3:+95764936 | None:intergenic |
| GATCAATGGAGTGATTTGTG+GGG | 0.696759 | 6_3:-95761415 | Msa0966910:CDS |
| ATATGAGATGGATTGTGAGG+TGG | 0.699180 | 6_3:-95764761 | Msa0966910:CDS |
| GAGATGTGTGGAGTTTGTGG+CGG | 0.715091 | 6_3:-95764803 | Msa0966910:CDS |
| GCGGTGGAAACGAACAACGT+CGG | 0.730215 | 6_3:-95764847 | Msa0966910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTCAATTAATTACTT+TGG | - | chr6_3:95761746-95761765 | Msa0966910:intron | 10.0% |
| !! | TAAAATCATATTTAAACTTA+GGG | - | chr6_3:95762532-95762551 | Msa0966910:intron | 10.0% |
| !! | TCAATAATTAATAAGTTTAA+GGG | + | chr6_3:95762737-95762756 | None:intergenic | 10.0% |
| !!! | GTAAATATTTTTTTTTGAAT+CGG | - | chr6_3:95762757-95762776 | Msa0966910:intron | 10.0% |
| !! | AAAAAATGTTTACTTAAAAA+TGG | + | chr6_3:95762872-95762891 | None:intergenic | 10.0% |
| !! | AAATATGAACAAAATTATAA+AGG | - | chr6_3:95763760-95763779 | Msa0966910:intron | 10.0% |
| !!! | AAAAGTTTTAGAAATAGTTA+AGG | - | chr6_3:95761928-95761947 | Msa0966910:intron | 15.0% |
| !!! | ATAGTTAAGGTTTTAAATAA+CGG | - | chr6_3:95761941-95761960 | Msa0966910:intron | 15.0% |
| !! | CTAAAATCATATTTAAACTT+AGG | - | chr6_3:95762531-95762550 | Msa0966910:intron | 15.0% |
| !! | CTCAATAATTAATAAGTTTA+AGG | + | chr6_3:95762738-95762757 | None:intergenic | 15.0% |
| !! | TAAAAATGGACAATTATAAA+AGG | + | chr6_3:95762858-95762877 | None:intergenic | 15.0% |
| !! | ATGAATGAATAAAAATCCAA+CGG | + | chr6_3:95761695-95761714 | None:intergenic | 20.0% |
| !! | TATCTCAAAAAACATTGAAT+AGG | + | chr6_3:95761728-95761747 | None:intergenic | 20.0% |
| !! | TGATTAGTATAACAAACTTA+CGG | + | chr6_3:95761834-95761853 | None:intergenic | 20.0% |
| !!! | ATGATCAAGGTTTTAAAAAT+CGG | + | chr6_3:95762304-95762323 | None:intergenic | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | + | chr6_3:95762597-95762616 | None:intergenic | 20.0% |
| !! | AGACTCATAAATCTTTATAT+TGG | + | chr6_3:95763063-95763082 | None:intergenic | 20.0% |
| !! | AGTATAACTCAAATGTTAAA+AGG | - | chr6_3:95763087-95763106 | Msa0966910:intron | 20.0% |
| !! | TCAATATATGTTTCATATCA+AGG | + | chr6_3:95763245-95763264 | None:intergenic | 20.0% |
| !! | AATTAAAAAAAAGCTCATGA+AGG | + | chr6_3:95763311-95763330 | None:intergenic | 20.0% |
| !! | ACAATTTATAGATATGAGTT+AGG | - | chr6_3:95763441-95763460 | Msa0966910:intron | 20.0% |
| !! | TAGGAATAATATAATCGTAA+TGG | - | chr6_3:95763658-95763677 | Msa0966910:intron | 20.0% |
| !! | TAGTTTATATCAATAATCAC+TGG | - | chr6_3:95763706-95763725 | Msa0966910:intron | 20.0% |
| !! | TTAAGGTACATAAAAATTGT+TGG | - | chr6_3:95764266-95764285 | Msa0966910:intron | 20.0% |
| !!! | AATTTTTATGTACTCTTGAT+GGG | + | chr6_3:95764431-95764450 | None:intergenic | 20.0% |
| !!! | GTTAAGTTTTTCTTTGTTAT+AGG | - | chr6_3:95764483-95764502 | Msa0966910:intron | 20.0% |
| !! | TGTTAAGCAATAAAATACAT+CGG | + | chr6_3:95764935-95764954 | None:intergenic | 20.0% |
| !!! | AATTTTTCATTGTAAACAAC+AGG | - | chr6_3:95765013-95765032 | Msa0966910:CDS | 20.0% |
| !!! | ATTTTTCATTGTAAACAACA+GGG | - | chr6_3:95765014-95765033 | Msa0966910:CDS | 20.0% |
| ! | AAAACACAATCTGATTTAGA+GGG | + | chr6_3:95761175-95761194 | None:intergenic | 25.0% |
| ! | AAAAACACAATCTGATTTAG+AGG | + | chr6_3:95761176-95761195 | None:intergenic | 25.0% |
| !! | AATCCAACATCTTGATAATA+CGG | + | chr6_3:95761653-95761672 | None:intergenic | 25.0% |
| ! | TATTATCAAGATGTTGGATT+TGG | - | chr6_3:95761653-95761672 | Msa0966910:intron | 25.0% |
| ! | ATTATCAAGATGTTGGATTT+GGG | - | chr6_3:95761654-95761673 | Msa0966910:intron | 25.0% |
| ! | TTACTTTGGTTATATTAGTC+AGG | - | chr6_3:95761760-95761779 | Msa0966910:intron | 25.0% |
| ! | TTAAACAAGGACAATAAACA+AGG | - | chr6_3:95761873-95761892 | Msa0966910:intron | 25.0% |
| !!! | TCATGAATGACATTTTTTTG+CGG | - | chr6_3:95762159-95762178 | Msa0966910:CDS | 25.0% |
| ! | TTACGTTCACTTTGTAAAAA+CGG | - | chr6_3:95762227-95762246 | Msa0966910:CDS | 25.0% |
| ! | AATAGAGGTTAGATTATAAG+TGG | - | chr6_3:95762385-95762404 | Msa0966910:intron | 25.0% |
| ! | ATAAGTGGTTCAATAAATGA+TGG | - | chr6_3:95762400-95762419 | Msa0966910:intron | 25.0% |
| !!! | TTTTTTTTTTACTCCTGGTA+AGG | + | chr6_3:95762497-95762516 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTTTTTTACTCC+TGG | + | chr6_3:95762502-95762521 | None:intergenic | 25.0% |
| !! | TCTAGGAGTATATGTATTTA+GGG | - | chr6_3:95762821-95762840 | Msa0966910:intron | 25.0% |
| ! | AAACTCATACATTAGAAGTA+CGG | - | chr6_3:95762909-95762928 | Msa0966910:intron | 25.0% |
| ! | TAACTCAAATGTTAAAAGGA+TGG | - | chr6_3:95763091-95763110 | Msa0966910:intron | 25.0% |
| ! | ATATATGTTTCATATCAAGG+TGG | + | chr6_3:95763242-95763261 | None:intergenic | 25.0% |
| ! | AAGAGCTTATATTTGTCTAA+TGG | - | chr6_3:95763361-95763380 | Msa0966910:intron | 25.0% |
| ! | TATTCATCAATGACTTCATA+AGG | + | chr6_3:95763944-95763963 | None:intergenic | 25.0% |
| ! | TTTGGATAAGTTCATTATGA+GGG | - | chr6_3:95764003-95764022 | Msa0966910:intron | 25.0% |
| ! | TATAGAAAGCTTCAAGAATT+GGG | - | chr6_3:95764143-95764162 | Msa0966910:intron | 25.0% |
| !! | CAATTTTTATGTACTCTTGA+TGG | + | chr6_3:95764432-95764451 | None:intergenic | 25.0% |
| !! | CAAGAGTACATAAAAATTGT+TGG | - | chr6_3:95764433-95764452 | Msa0966910:intron | 25.0% |
| ! | ACAAAACGTACATAATTTCA+AGG | + | chr6_3:95764460-95764479 | None:intergenic | 25.0% |
| ! | CATGAAAAATGAATACAGAT+CGG | + | chr6_3:95764978-95764997 | None:intergenic | 25.0% |
| !! | AAAATATGAGATGGATTGTG+AGG | - | chr6_3:95761523-95761542 | Msa0966910:intron | 30.0% |
| ACGAACAATGACATTAAACA+AGG | - | chr6_3:95761860-95761879 | Msa0966910:intron | 30.0% | |
| CTTTGTAAAAACGGTAATGT+CGG | - | chr6_3:95762236-95762255 | Msa0966910:intron | 30.0% | |
| ATAATCTAACCTCTATTGCA+AGG | + | chr6_3:95762382-95762401 | None:intergenic | 30.0% | |
| ! | TATCCATATTGTTAGCTTAC+AGG | + | chr6_3:95762427-95762446 | None:intergenic | 30.0% |
| CATGTTAAGCAATCCAAAAA+TGG | - | chr6_3:95762581-95762600 | Msa0966910:intron | 30.0% | |
| AAATACATATACTCCTAGAG+TGG | + | chr6_3:95762820-95762839 | None:intergenic | 30.0% | |
| ! | CTCTAGGAGTATATGTATTT+AGG | - | chr6_3:95762820-95762839 | Msa0966910:intron | 30.0% |
| ! | TTATATTGGTGATCACTGAT+TGG | + | chr6_3:95763049-95763068 | None:intergenic | 30.0% |
| ACATTATATATGCTGGAATG+TGG | - | chr6_3:95763118-95763137 | Msa0966910:intron | 30.0% | |
| GTATAGAAGTGGAGAATTAT+GGG | + | chr6_3:95763150-95763169 | None:intergenic | 30.0% | |
| TGTATAGAAGTGGAGAATTA+TGG | + | chr6_3:95763151-95763170 | None:intergenic | 30.0% | |
| AGCTTATTCATACACTATTC+TGG | - | chr6_3:95763397-95763416 | Msa0966910:intron | 30.0% | |
| ATCCAGTATCAAATAGTCTA+AGG | + | chr6_3:95763582-95763601 | None:intergenic | 30.0% | |
| GAATGAAATTCGTTAGACAA+AGG | - | chr6_3:95763634-95763653 | Msa0966910:intron | 30.0% | |
| AAATTCGTTAGACAAAGGTT+AGG | - | chr6_3:95763639-95763658 | Msa0966910:intron | 30.0% | |
| AATGAAATGACATATGAGCA+TGG | - | chr6_3:95763788-95763807 | Msa0966910:intron | 30.0% | |
| ! | TATCCAAAGACTTTTCTTGT+AGG | + | chr6_3:95763991-95764010 | None:intergenic | 30.0% |
| CTTTGGATAAGTTCATTATG+AGG | - | chr6_3:95764002-95764021 | Msa0966910:intron | 30.0% | |
| TAAGTTTACCCAATCATTGA+AGG | + | chr6_3:95764087-95764106 | None:intergenic | 30.0% | |
| CTTTCTATAGAAACTCAAAC+TGG | + | chr6_3:95764132-95764151 | None:intergenic | 30.0% | |
| CTATAGAAAGCTTCAAGAAT+TGG | - | chr6_3:95764142-95764161 | Msa0966910:intron | 30.0% | |
| TTCACAATATTTCTCTTGAC+TGG | - | chr6_3:95764167-95764186 | Msa0966910:intron | 30.0% | |
| AAACTCATTATGTGTCTCTT+AGG | - | chr6_3:95764402-95764421 | Msa0966910:intron | 30.0% | |
| AGTTCTTTGCAATTTAACAG+AGG | - | chr6_3:95764755-95764774 | Msa0966910:CDS | 30.0% | |
| CAATAAAATACATCGGATTC+GGG | + | chr6_3:95764928-95764947 | None:intergenic | 30.0% | |
| GCAATAAAATACATCGGATT+CGG | + | chr6_3:95764929-95764948 | None:intergenic | 30.0% | |
| ! | ACCAAATGACTTGCATTATT+AGG | - | chr6_3:95765120-95765139 | Msa0966910:CDS | 30.0% |
| ACCTAATAATGCAAGTCATT+TGG | + | chr6_3:95765124-95765143 | None:intergenic | 30.0% | |
| ! | AAACTGTTTTCTCACTTTAG+AGG | + | chr6_3:95765177-95765196 | None:intergenic | 30.0% |
| GTATAGATATATGCAAGGGT+CGG | - | chr6_3:95761073-95761092 | Msa0966910:three_prime_UTR | 35.0% | |
| TATAGATATATGCAAGGGTC+GGG | - | chr6_3:95761074-95761093 | Msa0966910:three_prime_UTR | 35.0% | |
| GATCGGAGAAAAATATGAGA+TGG | - | chr6_3:95761514-95761533 | Msa0966910:CDS | 35.0% | |
| ! | TTTTCTGATGAGTTTGCGAA+AGG | - | chr6_3:95761557-95761576 | Msa0966910:intron | 35.0% |
| ! | CGTATAGGATTTTGCGATTT+CGG | - | chr6_3:95761973-95761992 | Msa0966910:intron | 35.0% |
| TATGATTGTTGCAGTTGTTG+CGG | - | chr6_3:95762014-95762033 | Msa0966910:intron | 35.0% | |
| !!! | ACATTTTTTTGCGGTCGTAA+TGG | - | chr6_3:95762168-95762187 | Msa0966910:CDS | 35.0% |
| !!! | CTACCTATAGTTTTTTGTCG+CGG | - | chr6_3:95762259-95762278 | Msa0966910:intron | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr6_3:95762695-95762714 | Msa0966910:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr6_3:95762696-95762715 | Msa0966910:intron | 35.0% |
| CTTCTCGACGTGAATAATAT+TGG | + | chr6_3:95762783-95762802 | None:intergenic | 35.0% | |
| ACTAATAACAGTACCACTCT+AGG | - | chr6_3:95762804-95762823 | Msa0966910:intron | 35.0% | |
| TGGAGAGACATTATATATGC+TGG | - | chr6_3:95763111-95763130 | Msa0966910:intron | 35.0% | |
| ACATGCTAAGTGTATAGAAG+TGG | + | chr6_3:95763161-95763180 | None:intergenic | 35.0% | |
| CTATACACTTAGCATGTGTT+TGG | - | chr6_3:95763164-95763183 | Msa0966910:intron | 35.0% | |
| CAATGAGTATGCGAAAATCA+CGG | - | chr6_3:95763192-95763211 | Msa0966910:intron | 35.0% | |
| TGGATATGTCAGAATCACAA+TGG | + | chr6_3:95763222-95763241 | None:intergenic | 35.0% | |
| CTTCTCTACACGTATTTATG+AGG | + | chr6_3:95763338-95763357 | None:intergenic | 35.0% | |
| TCTGGAGATCTTATTGTATG+TGG | - | chr6_3:95763415-95763434 | Msa0966910:intron | 35.0% | |
| TCATCAACAAAGGGACATTA+GGG | + | chr6_3:95763547-95763566 | None:intergenic | 35.0% | |
| TTCATCAACAAAGGGACATT+AGG | + | chr6_3:95763548-95763567 | None:intergenic | 35.0% | |
| GGACTACTTTCATCAACAAA+GGG | + | chr6_3:95763556-95763575 | None:intergenic | 35.0% | |
| AGGACTACTTTCATCAACAA+AGG | + | chr6_3:95763557-95763576 | None:intergenic | 35.0% | |
| ! | GTATCAAATAGTCTAAGGTG+AGG | + | chr6_3:95763577-95763596 | None:intergenic | 35.0% |
| CACCTTAGACTATTTGATAC+TGG | - | chr6_3:95763577-95763596 | Msa0966910:intron | 35.0% | |
| CAAGTCCTTATGCATAATTG+TGG | - | chr6_3:95763910-95763929 | Msa0966910:intron | 35.0% | |
| TCATGCCACAATTATGCATA+AGG | + | chr6_3:95763918-95763937 | None:intergenic | 35.0% | |
| TAGCCTACAAGAAAAGTCTT+TGG | - | chr6_3:95763985-95764004 | Msa0966910:intron | 35.0% | |
| TTATTTCACACTCTGGTGTT+TGG | - | chr6_3:95764030-95764049 | Msa0966910:intron | 35.0% | |
| ATGAGACATCCTTCAATGAT+TGG | - | chr6_3:95764075-95764094 | Msa0966910:intron | 35.0% | |
| TGAGACATCCTTCAATGATT+GGG | - | chr6_3:95764076-95764095 | Msa0966910:intron | 35.0% | |
| AAGCAAACCTTCTATTTGCA+GGG | - | chr6_3:95764219-95764238 | Msa0966910:intron | 35.0% | |
| TATTTGCAGGGTACAGAAAT+TGG | - | chr6_3:95764231-95764250 | Msa0966910:intron | 35.0% | |
| ATTTGCAGGGTACAGAAATT+GGG | - | chr6_3:95764232-95764251 | Msa0966910:intron | 35.0% | |
| !!! | AGCTCTAGAGTTCAAACTTT+TGG | + | chr6_3:95764374-95764393 | None:intergenic | 35.0% |
| CTGTAAAACACAAAGCTGAT+TGG | + | chr6_3:95764598-95764617 | None:intergenic | 35.0% | |
| !! | CAATCAGCTTTGTGTTTTAC+AGG | - | chr6_3:95764596-95764615 | Msa0966910:intron | 35.0% |
| !!! | ACACTGAACGAGTTTTAAGA+GGG | + | chr6_3:95764677-95764696 | None:intergenic | 35.0% |
| ! | AGATCAATGGAGTGATTTGT+GGG | - | chr6_3:95764871-95764890 | Msa0966910:CDS | 35.0% |
| !!! | ACTTGTCGCAGTTTTTTTGG+TGG | + | chr6_3:95761112-95761131 | None:intergenic | 40.0% |
| !!! | GTGACTTGTCGCAGTTTTTT+TGG | + | chr6_3:95761115-95761134 | None:intergenic | 40.0% |
| !!! | TTTTTCCGGCGAGTTTTGTT+TGG | + | chr6_3:95761256-95761275 | None:intergenic | 40.0% |
| ACAAACTCCACACATCTCTT+CGG | + | chr6_3:95761482-95761501 | None:intergenic | 40.0% | |
| ! | TTTGTGGCGGAGTATATGAT+CGG | - | chr6_3:95761497-95761516 | Msa0966910:CDS | 40.0% |
| !! | ATATGAGATGGATTGTGAGG+TGG | - | chr6_3:95761526-95761545 | Msa0966910:intron | 40.0% |
| GTGCCGTATTATCAAGATGT+TGG | - | chr6_3:95761647-95761666 | Msa0966910:intron | 40.0% | |
| !!! | GTATGTGCTTTTTTAGCCGT+TGG | - | chr6_3:95761676-95761695 | Msa0966910:intron | 40.0% |
| !!! | AAGGTTTTAAATAACGGCCG+CGG | - | chr6_3:95761947-95761966 | Msa0966910:intron | 40.0% |
| ! | TTTTGCGATTTCGGCTGTTA+TGG | - | chr6_3:95761982-95762001 | Msa0966910:intron | 40.0% |
| ATGATTGTTGCAGTTGTTGC+GGG | - | chr6_3:95762015-95762034 | Msa0966910:intron | 40.0% | |
| !! | GTGTTTTGTTGCGACTGTAA+CGG | - | chr6_3:95762190-95762209 | Msa0966910:CDS | 40.0% |
| CAACACGACACTTATGATCA+AGG | + | chr6_3:95762317-95762336 | None:intergenic | 40.0% | |
| ! | CTTGATCATAAGTGTCGTGT+TGG | - | chr6_3:95762315-95762334 | Msa0966910:intron | 40.0% |
| ! | TTCTAGTTAAAGGTGTGACC+CGG | + | chr6_3:95762355-95762374 | None:intergenic | 40.0% |
| ! | GCAAGGACACTTCTAGTTAA+AGG | + | chr6_3:95762365-95762384 | None:intergenic | 40.0% |
| !! | TAGAAGTGTCCTTGCAATAG+AGG | - | chr6_3:95762370-95762389 | Msa0966910:intron | 40.0% |
| GGTCCTGTAAGCTAACAATA+TGG | - | chr6_3:95762421-95762440 | Msa0966910:intron | 40.0% | |
| TCCAGACAAAAAACCTTACC+AGG | - | chr6_3:95762481-95762500 | Msa0966910:intron | 40.0% | |
| !!! | TCCTGGTAAGGTTTTTTGTC+TGG | + | chr6_3:95762485-95762504 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr6_3:95762555-95762574 | Msa0966910:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr6_3:95762556-95762575 | Msa0966910:intron | 40.0% |
| TTGCTTAACATGTGCCCTAA+GGG | + | chr6_3:95762573-95762592 | None:intergenic | 40.0% | |
| ATTGCTTAACATGTGCCCTA+AGG | + | chr6_3:95762574-95762593 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr6_3:95762713-95762732 | None:intergenic | 40.0% |
| GGGTAACTTATTTCACACTC+TGG | - | chr6_3:95764023-95764042 | Msa0966910:intron | 40.0% | |
| CTATAGAAACTCAAACTGGC+AGG | + | chr6_3:95764128-95764147 | None:intergenic | 40.0% | |
| GAAGCAAACCTTCTATTTGC+AGG | - | chr6_3:95764218-95764237 | Msa0966910:intron | 40.0% | |
| TTCTGTACCCTGCAAATAGA+AGG | + | chr6_3:95764229-95764248 | None:intergenic | 40.0% | |
| ATTGGGAGAGACTCATCTTA+AGG | - | chr6_3:95764249-95764268 | Msa0966910:intron | 40.0% | |
| ! | AGAGTTTTACGCAGAAGTCT+TGG | + | chr6_3:95764556-95764575 | None:intergenic | 40.0% |
| ACTTCTGCGTAAAACTCTTC+CGG | - | chr6_3:95764558-95764577 | Msa0966910:intron | 40.0% | |
| ! | AAACTCTTCCGGTTTGTCTT+AGG | - | chr6_3:95764569-95764588 | Msa0966910:intron | 40.0% |
| ! | ATTGGTGACCTAAGACAAAC+CGG | + | chr6_3:95764580-95764599 | None:intergenic | 40.0% |
| !!! | GACACTGAACGAGTTTTAAG+AGG | + | chr6_3:95764678-95764697 | None:intergenic | 40.0% |
| AAACTCGTTCAGTGTCTCTT+AGG | - | chr6_3:95764682-95764701 | Msa0966910:CDS | 40.0% | |
| TAACAAAACACGTCCCAAGT+AGG | + | chr6_3:95764723-95764742 | None:intergenic | 40.0% | |
| CAAATCACTCCATTGATCTC+CGG | + | chr6_3:95764870-95764889 | None:intergenic | 40.0% | |
| GAGATCAATGGAGTGATTTG+TGG | - | chr6_3:95764870-95764889 | Msa0966910:CDS | 40.0% | |
| ! | GATCAATGGAGTGATTTGTG+GGG | - | chr6_3:95764872-95764891 | Msa0966910:CDS | 40.0% |
| ATTCGGGAGTTTAAAAGACC+GGG | + | chr6_3:95764912-95764931 | None:intergenic | 40.0% | |
| GATTCGGGAGTTTAAAAGAC+CGG | + | chr6_3:95764913-95764932 | None:intergenic | 40.0% | |
| GCTTAACACACGAATTGAGA+TGG | - | chr6_3:95764947-95764966 | Msa0966910:CDS | 40.0% | |
| ATTGTAAACAACAGGGCTAC+TGG | - | chr6_3:95765021-95765040 | Msa0966910:CDS | 40.0% | |
| CGAAACCAAACAAAACTCGC+CGG | - | chr6_3:95761248-95761267 | Msa0966910:three_prime_UTR | 45.0% | |
| TGAAGAGGAGGATTGTTAGC+CGG | + | chr6_3:95761325-95761344 | None:intergenic | 45.0% | |
| ATGAGGAGATGATGAAGAGG+AGG | + | chr6_3:95761337-95761356 | None:intergenic | 45.0% | |
| TCGATGAGGAGATGATGAAG+AGG | + | chr6_3:95761340-95761359 | None:intergenic | 45.0% | |
| ! | GGATGGTTTGTGTTGAGATG+GGG | + | chr6_3:95761367-95761386 | None:intergenic | 45.0% |
| ! | CGGATGGTTTGTGTTGAGAT+GGG | + | chr6_3:95761368-95761387 | None:intergenic | 45.0% |
| TGAGGTGGAGAATGAAGGTT+CGG | + | chr6_3:95761399-95761418 | None:intergenic | 45.0% | |
| CAGTATGAGGTGGAGAATGA+AGG | + | chr6_3:95761404-95761423 | None:intergenic | 45.0% | |
| AAACGAACAACGTCGGAGAA+TGG | - | chr6_3:95761447-95761466 | Msa0966910:CDS | 45.0% | |
| GAAGAGATGTGTGGAGTTTG+TGG | - | chr6_3:95761481-95761500 | Msa0966910:CDS | 45.0% | |
| ! | TGAGTTTGCGAAAGGTGTGA+CGG | - | chr6_3:95761565-95761584 | Msa0966910:intron | 45.0% |
| TGATTGTTGCAGTTGTTGCG+GGG | - | chr6_3:95762016-95762035 | Msa0966910:intron | 45.0% | |
| AGGCCGCGACAAAAAACTAT+AGG | + | chr6_3:95762265-95762284 | None:intergenic | 45.0% | |
| TCGGTCCGTTATCGAGAAAA+AGG | + | chr6_3:95762285-95762304 | None:intergenic | 45.0% | |
| ACTCTGGTGTTTGGACTAAC+AGG | - | chr6_3:95764039-95764058 | Msa0966910:intron | 45.0% | |
| !! | CGACAAGAGTTGATGAGTGA+AGG | - | chr6_3:95764824-95764843 | Msa0966910:CDS | 45.0% |
| AGTGAAGGCTACAGAATCCA+TGG | - | chr6_3:95764839-95764858 | Msa0966910:CDS | 45.0% | |
| TACAGAATCCATGGAAGCTC+CGG | - | chr6_3:95764848-95764867 | Msa0966910:CDS | 45.0% | |
| ! | ATTTCCCGGCGACGTTTTTC+CGG | + | chr6_3:95761270-95761289 | None:intergenic | 50.0% |
| GAAGAGGAGGATTGTTAGCC+GGG | + | chr6_3:95761324-95761343 | None:intergenic | 50.0% | |
| ! | TGGTTTGTGTTGAGATGGGG+TGG | + | chr6_3:95761364-95761383 | None:intergenic | 50.0% |
| ! | GCGGATGGTTTGTGTTGAGA+TGG | + | chr6_3:95761369-95761388 | None:intergenic | 50.0% |
| TGGAGAATGAAGGTTCGGAG+GGG | + | chr6_3:95761394-95761413 | None:intergenic | 50.0% | |
| GTGGAGAATGAAGGTTCGGA+GGG | + | chr6_3:95761395-95761414 | None:intergenic | 50.0% | |
| GCAGATTCCGAAGAGATGTG+TGG | - | chr6_3:95761472-95761491 | Msa0966910:CDS | 50.0% | |
| GAGATGTGTGGAGTTTGTGG+CGG | - | chr6_3:95761484-95761503 | Msa0966910:CDS | 50.0% | |
| !! | TGAGATGGATTGTGAGGTGG+TGG | - | chr6_3:95761529-95761548 | Msa0966910:intron | 50.0% |
| !! | GAGATGGATTGTGAGGTGGT+GGG | - | chr6_3:95761530-95761549 | Msa0966910:intron | 50.0% |
| !! | AGATGGATTGTGAGGTGGTG+GGG | - | chr6_3:95761531-95761550 | Msa0966910:intron | 50.0% |
| ! | TTTGCGAAAGGTGTGACGGT+TGG | - | chr6_3:95761569-95761588 | Msa0966910:intron | 50.0% |
| !! | TGGTGATGGTAGGGATGCTT+GGG | - | chr6_3:95761592-95761611 | Msa0966910:intron | 50.0% |
| CAAAATCCTATACGCGACCG+CGG | + | chr6_3:95761967-95761986 | None:intergenic | 50.0% | |
| ! | CGCGGCCTTTTTCTCGATAA+CGG | - | chr6_3:95762277-95762296 | Msa0966910:intron | 50.0% |
| CTCAAACTGGCAGGTAAAGC+TGG | + | chr6_3:95764119-95764138 | None:intergenic | 50.0% | |
| ACCAACCGAGCTTCCTACTT+GGG | - | chr6_3:95764707-95764726 | Msa0966910:CDS | 50.0% | |
| !! | AACAGAGGCGCTTCTGATCA+AGG | - | chr6_3:95764770-95764789 | Msa0966910:CDS | 50.0% |
| !! | ACAGAGGCGCTTCTGATCAA+GGG | - | chr6_3:95764771-95764790 | Msa0966910:CDS | 50.0% |
| ATTGATCTCCGGAGCTTCCA+TGG | + | chr6_3:95764859-95764878 | None:intergenic | 50.0% | |
| ATGGAAGCTCCGGAGATCAA+TGG | - | chr6_3:95764858-95764877 | Msa0966910:CDS | 50.0% | |
| CAAGGGTCGGGTTCAAACTC+TGG | - | chr6_3:95761086-95761105 | Msa0966910:three_prime_UTR | 55.0% | |
| TGAGATGGGGTGGATCGATG+AGG | + | chr6_3:95761354-95761373 | None:intergenic | 55.0% | |
| AGAATGAAGGTTCGGAGGGG+AGG | + | chr6_3:95761391-95761410 | None:intergenic | 55.0% | |
| GGTGGAGAATGAAGGTTCGG+AGG | + | chr6_3:95761396-95761415 | None:intergenic | 55.0% | |
| TCTCCAGCTGTCGCAGTATG+AGG | + | chr6_3:95761417-95761436 | None:intergenic | 55.0% | |
| CTGCGACAGCTGGAGATTAG+CGG | - | chr6_3:95761421-95761440 | Msa0966910:CDS | 55.0% | |
| GCGGTGGAAACGAACAACGT+CGG | - | chr6_3:95761440-95761459 | Msa0966910:CDS | 55.0% | |
| !! | TGACGGTTGGTGGTGATGGT+AGG | - | chr6_3:95761582-95761601 | Msa0966910:intron | 55.0% |
| !! | GACGGTTGGTGGTGATGGTA+GGG | - | chr6_3:95761583-95761602 | Msa0966910:intron | 55.0% |
| !! | GTGGTGATGGTAGGGATGCT+TGG | - | chr6_3:95761591-95761610 | Msa0966910:intron | 55.0% |
| GTGTCGTGTTGGACACGTGT+CGG | - | chr6_3:95762326-95762345 | Msa0966910:intron | 55.0% | |
| GGCAGGTAAAGCTGGTGCAT+CGG | + | chr6_3:95764111-95764130 | None:intergenic | 55.0% | |
| CAAGTAGGAAGCTCGGTTGG+TGG | + | chr6_3:95764708-95764727 | None:intergenic | 55.0% | |
| CACCAACCGAGCTTCCTACT+TGG | - | chr6_3:95764706-95764725 | Msa0966910:CDS | 55.0% | |
| TCCCAAGTAGGAAGCTCGGT+TGG | + | chr6_3:95764711-95764730 | None:intergenic | 55.0% | |
| CACGTCCCAAGTAGGAAGCT+CGG | + | chr6_3:95764715-95764734 | None:intergenic | 55.0% | |
| GGGGTTATGCAGTATCCACC+CGG | - | chr6_3:95764891-95764910 | Msa0966910:CDS | 55.0% | |
| CGGGAGTTTAAAAGACCGGG+TGG | + | chr6_3:95764909-95764928 | None:intergenic | 55.0% | |
| ACTCGCCGGAAAAACGTCGC+CGG | - | chr6_3:95761262-95761281 | Msa0966910:three_prime_UTR | 60.0% | |
| ! | GGCGAGTGGTGGAGATTTCC+CGG | + | chr6_3:95761284-95761303 | None:intergenic | 60.0% |
| GGGAAATCTCCACCACTCGC+CGG | - | chr6_3:95761283-95761302 | Msa0966910:three_prime_UTR | 60.0% | |
| GAGGATTGTTAGCCGGGCGA+CGG | + | chr6_3:95761318-95761337 | None:intergenic | 60.0% | |
| ATGAAGGTTCGGAGGGGAGG+CGG | + | chr6_3:95761388-95761407 | None:intergenic | 60.0% | |
| CCAGCTGTCGCAGTATGAGG+TGG | + | chr6_3:95761414-95761433 | None:intergenic | 60.0% | |
| CCACCTCATACTGCGACAGC+TGG | - | chr6_3:95761411-95761430 | Msa0966910:CDS | 60.0% | |
| CGACAGCTGGAGATTAGCGG+TGG | - | chr6_3:95761424-95761443 | Msa0966910:CDS | 60.0% | |
| ! | GCGAAAGGTGTGACGGTTGG+TGG | - | chr6_3:95761572-95761591 | Msa0966910:intron | 60.0% |
| !! | GGTGTGACGGTTGGTGGTGA+TGG | - | chr6_3:95761578-95761597 | Msa0966910:intron | 60.0% |
| ! | GTTGGACACGTGTCGGTGAC+CGG | - | chr6_3:95762333-95762352 | Msa0966910:intron | 60.0% |
| ! | TTGGACACGTGTCGGTGACC+GGG | - | chr6_3:95762334-95762353 | Msa0966910:intron | 60.0% |
| CTCGCCGGAAAAACGTCGCC+GGG | - | chr6_3:95761263-95761282 | Msa0966910:three_prime_UTR | 65.0% | |
| TTTCCATCGCCGGCGAGTGG+TGG | + | chr6_3:95761295-95761314 | None:intergenic | 65.0% | |
| TAACGGCCGCGGTCGCGTAT+AGG | - | chr6_3:95761958-95761977 | Msa0966910:intron | 65.0% | |
| TCTCCACCACTCGCCGGCGA+TGG | - | chr6_3:95761289-95761308 | Msa0966910:three_prime_UTR | 70.0% | |
| CGGTTTCCATCGCCGGCGAG+TGG | + | chr6_3:95761298-95761317 | None:intergenic | 70.0% | |
| CGGGCGACGGTTTCCATCGC+CGG | + | chr6_3:95761305-95761324 | None:intergenic | 70.0% | |
| CGGCGATGGAAACCGTCGCC+CGG | - | chr6_3:95761303-95761322 | Msa0966910:three_prime_UTR | 70.0% | |
| AGGTTCGGAGGGGAGGCGGA+TGG | + | chr6_3:95761384-95761403 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 95761071 | 95765238 | 95761071 | ID=Msa0966910;Name=Msa0966910 |
| chr6_3 | mRNA | 95761071 | 95765238 | 95761071 | ID=Msa0966910-mRNA-1;Parent=Msa0966910;Name=Msa0966910-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.66|1|1|1|3|286|330 |
| chr6_3 | exon | 95761071 | 95761534 | 95761071 | ID=Msa0966910-mRNA-1:exon:17769;Parent=Msa0966910-mRNA-1 |
| chr6_3 | exon | 95762039 | 95762248 | 95762039 | ID=Msa0966910-mRNA-1:exon:17768;Parent=Msa0966910-mRNA-1 |
| chr6_3 | exon | 95764634 | 95765238 | 95764634 | ID=Msa0966910-mRNA-1:exon:17767;Parent=Msa0966910-mRNA-1 |
| chr6_3 | CDS | 95764634 | 95765238 | 95764634 | ID=Msa0966910-mRNA-1:cds;Parent=Msa0966910-mRNA-1 |
| chr6_3 | CDS | 95762039 | 95762248 | 95762039 | ID=Msa0966910-mRNA-1:cds;Parent=Msa0966910-mRNA-1 |
| chr6_3 | CDS | 95761357 | 95761534 | 95761357 | ID=Msa0966910-mRNA-1:cds;Parent=Msa0966910-mRNA-1 |
| chr6_3 | three_prime_UTR | 95761071 | 95761356 | 95761071 | ID=Msa0966910-mRNA-1:three_prime_utr;Parent=Msa0966910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
