Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901830 | XP_003620757.1 | 94.048 | 252 | 14 | 1 | 1 | 251 | 1 | 252 | 2.33e-166 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901830 | sp|P27061|PPA1_SOLLC | 55.189 | 212 | 95 | 0 | 39 | 250 | 43 | 254 | 2.70e-88 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901830 | G7KQI1 | 94.048 | 252 | 14 | 1 | 1 | 251 | 1 | 252 | 1.11e-166 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0431250 | Msa0901830 | -0.807712 | 4.420122e-50 | -8.615850e-47 |
| Msa0883350 | Msa0901830 | -0.801726 | 7.857846e-49 | -8.615850e-47 |
| Msa0901830 | Msa0966910 | 0.912257 | 2.394676e-83 | -8.615850e-47 |
| Msa0901830 | Msa1036360 | -0.800125 | 1.668756e-48 | -8.615850e-47 |
| Msa0901830 | Msa1130350 | -0.802482 | 5.493523e-49 | -8.615850e-47 |
| Msa0901830 | Msa1441200 | -0.803522 | 3.349666e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901830 | MtrunA17_Chr6g0487381 | 94.048 | 252 | 14 | 1 | 1 | 251 | 1 | 252 | 2.15e-170 | 469 |
| Msa0901830 | MtrunA17_Chr8g0356021 | 58.216 | 213 | 89 | 0 | 39 | 251 | 47 | 259 | 2.08e-87 | 260 |
| Msa0901830 | MtrunA17_Chr8g0340811 | 49.065 | 214 | 107 | 2 | 39 | 251 | 52 | 264 | 6.58e-73 | 223 |
| Msa0901830 | MtrunA17_Chr8g0340821 | 49.065 | 214 | 107 | 2 | 39 | 251 | 49 | 261 | 5.07e-70 | 216 |
| Msa0901830 | MtrunA17_Chr8g0340031 | 41.558 | 231 | 134 | 1 | 21 | 250 | 19 | 249 | 2.40e-63 | 198 |
| Msa0901830 | MtrunA17_Chr1g0168451 | 41.204 | 216 | 126 | 1 | 37 | 251 | 51 | 266 | 1.09e-60 | 192 |
| Msa0901830 | MtrunA17_Chr8g0334461 | 44.954 | 218 | 113 | 3 | 41 | 251 | 70 | 287 | 1.72e-57 | 184 |
| Msa0901830 | MtrunA17_Chr1g0186301 | 37.154 | 253 | 149 | 5 | 4 | 251 | 15 | 262 | 2.84e-57 | 183 |
| Msa0901830 | MtrunA17_Chr8g0340021 | 44.615 | 130 | 71 | 1 | 122 | 250 | 23 | 152 | 3.73e-30 | 110 |
| Msa0901830 | MtrunA17_Chr7g0265641 | 50.000 | 104 | 51 | 1 | 125 | 227 | 6 | 109 | 2.84e-28 | 104 |
| Msa0901830 | MtrunA17_Chr8g0356651 | 44.330 | 97 | 50 | 2 | 39 | 132 | 50 | 145 | 3.14e-23 | 92.4 |
| Msa0901830 | MtrunA17_Chr3g0113091 | 28.151 | 238 | 165 | 4 | 7 | 244 | 58 | 289 | 1.96e-20 | 88.2 |
| Msa0901830 | MtrunA17_Chr5g0436371 | 26.761 | 213 | 145 | 3 | 37 | 247 | 84 | 287 | 3.77e-18 | 81.6 |
| Msa0901830 | MtrunA17_Chr8g0356661 | 53.846 | 52 | 24 | 0 | 198 | 249 | 4 | 55 | 3.26e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901830 | AT4G29260.1 | 57.143 | 238 | 99 | 2 | 13 | 250 | 20 | 254 | 4.74e-96 | 282 |
| Msa0901830 | AT4G29270.1 | 53.629 | 248 | 110 | 2 | 4 | 251 | 14 | 256 | 1.72e-94 | 278 |
| Msa0901830 | AT4G25150.1 | 53.521 | 213 | 99 | 0 | 38 | 250 | 47 | 259 | 1.95e-84 | 253 |
| Msa0901830 | AT5G51260.1 | 47.809 | 251 | 122 | 1 | 9 | 250 | 6 | 256 | 1.37e-83 | 250 |
| Msa0901830 | AT2G38600.2 | 42.629 | 251 | 142 | 2 | 1 | 250 | 1 | 250 | 1.47e-69 | 214 |
| Msa0901830 | AT2G38600.1 | 42.629 | 251 | 142 | 2 | 1 | 250 | 1 | 250 | 1.47e-69 | 214 |
| Msa0901830 | AT1G04040.1 | 43.636 | 220 | 116 | 3 | 38 | 251 | 54 | 271 | 6.28e-62 | 196 |
| Msa0901830 | AT5G44020.1 | 43.946 | 223 | 111 | 3 | 38 | 251 | 55 | 272 | 5.24e-61 | 193 |
| Msa0901830 | AT5G51260.2 | 42.784 | 194 | 102 | 1 | 9 | 193 | 6 | 199 | 2.92e-54 | 174 |
| Msa0901830 | AT5G24770.1 | 37.727 | 220 | 133 | 4 | 33 | 250 | 46 | 263 | 2.75e-47 | 158 |
| Msa0901830 | AT5G24780.1 | 36.916 | 214 | 131 | 4 | 39 | 250 | 57 | 268 | 1.10e-44 | 151 |
| Msa0901830 | AT5G24770.2 | 36.810 | 163 | 101 | 2 | 33 | 193 | 46 | 208 | 1.14e-32 | 119 |
| Msa0901830 | AT5G24780.2 | 35.669 | 157 | 99 | 2 | 39 | 193 | 57 | 213 | 1.93e-30 | 113 |
| Msa0901830 | AT2G39920.2 | 23.387 | 248 | 156 | 6 | 7 | 248 | 54 | 273 | 1.01e-11 | 63.9 |
| Msa0901830 | AT2G39920.4 | 23.387 | 248 | 157 | 6 | 7 | 248 | 54 | 274 | 3.04e-11 | 62.4 |
| Msa0901830 | AT2G39920.3 | 23.387 | 248 | 157 | 6 | 7 | 248 | 54 | 274 | 3.04e-11 | 62.4 |
| Msa0901830 | AT2G39920.1 | 23.387 | 248 | 157 | 6 | 7 | 248 | 54 | 274 | 3.04e-11 | 62.4 |
Find 94 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTGCAGGGTACAGAAAT+TGG | 0.195305 | 6_1:+98672120 | Msa0901830:CDS |
| ACCAAATGACTTGCATTATT+AGG | 0.240875 | 6_1:+98673002 | Msa0901830:three_prime_UTR |
| TATTATCAAGATGTTGGATT+TGG | 0.260039 | 6_1:+98669720 | Msa0901830:CDS |
| GTGGTGATGGTAGGGATGCT+TGG | 0.270118 | 6_1:+98669658 | Msa0901830:CDS |
| CTATAGAAAGCTTCAAGAAT+TGG | 0.298535 | 6_1:+98672031 | Msa0901830:CDS |
| GAAGCAAACCTTCTATTTGC+AGG | 0.325914 | 6_1:+98672107 | Msa0901830:CDS |
| TTCTGTACCCTGCAAATAGA+AGG | 0.336018 | 6_1:-98672115 | None:intergenic |
| ATGAGACATCCTTCAATGAT+TGG | 0.348566 | 6_1:+98671964 | Msa0901830:CDS |
| GCAATAAAATACATCGGATT+CGG | 0.350638 | 6_1:-98672815 | None:intergenic |
| CGGATGGTTTGTGTTGAGAT+GGG | 0.365136 | 6_1:-98669432 | None:intergenic |
| ATTATCAAGATGTTGGATTT+GGG | 0.370529 | 6_1:+98669721 | Msa0901830:CDS |
| TATAGAAAGCTTCAAGAATT+GGG | 0.370887 | 6_1:+98672032 | Msa0901830:CDS |
| ACCTAATAATGCAAGTCATT+TGG | 0.387252 | 6_1:-98673003 | None:intergenic |
| TGACGGTTGGTGGTGATGGT+AGG | 0.390241 | 6_1:+98669649 | Msa0901830:CDS |
| CAATAAAATACATCGGATTC+GGG | 0.407691 | 6_1:-98672814 | None:intergenic |
| GGCGAGTGGTGGAGATTTCC+CGG | 0.412163 | 6_1:-98669348 | None:intergenic |
| ATTTGCAGGGTACAGAAATT+GGG | 0.415081 | 6_1:+98672121 | Msa0901830:CDS |
| GCGGATGGTTTGTGTTGAGA+TGG | 0.427364 | 6_1:-98669433 | None:intergenic |
| CTCAAACTGGCAGGTAAAGC+TGG | 0.428025 | 6_1:-98672005 | None:intergenic |
| TGGTGATGGTAGGGATGCTT+GGG | 0.432736 | 6_1:+98669659 | Msa0901830:CDS |
| AACAGAGGCGCTTCTGATCA+AGG | 0.443646 | 6_1:+98672659 | Msa0901830:intron |
| CGGGCGACGGTTTCCATCGC+CGG | 0.450209 | 6_1:-98669369 | None:intergenic |
| AAGTGAATCGATCACTCTAC+TGG | 0.453797 | 6_1:+98673140 | Msa0901830:three_prime_UTR |
| TTCACAATATTTCTCTTGAC+TGG | 0.456433 | 6_1:+98672056 | Msa0901830:CDS |
| ATTGATCTCCGGAGCTTCCA+TGG | 0.457548 | 6_1:-98672745 | None:intergenic |
| AATCCAACATCTTGATAATA+CGG | 0.457939 | 6_1:-98669717 | None:intergenic |
| GAAGAGGAGGATTGTAAGCC+GGG | 0.467135 | 6_1:-98669388 | None:intergenic |
| ATGAAGGTTCGGAGGGGAGG+CGG | 0.467966 | 6_1:-98669452 | None:intergenic |
| TGAGACATCCTTCAATGATT+GGG | 0.468359 | 6_1:+98671965 | Msa0901830:CDS |
| GAAGAGATGTGTGGAGTTTG+TGG | 0.470043 | 6_1:+98669548 | Msa0901830:CDS |
| TCTCCAGCTGTCGCAGTATG+AGG | 0.472536 | 6_1:-98669481 | None:intergenic |
| AAACGAACAACGTCGGAGAA+TGG | 0.476433 | 6_1:+98669514 | Msa0901830:CDS |
| TGAGATGGATTGTGAGGTGG+TGG | 0.477904 | 6_1:+98669596 | Msa0901830:CDS |
| ATTGGGAGAGACTCATCTTA+AGG | 0.482164 | 6_1:+98672138 | Msa0901830:CDS |
| GGTGTGACGGTTGGTGGTGA+TGG | 0.485556 | 6_1:+98669645 | Msa0901830:CDS |
| TACAGAATCCATGGAAGCTC+CGG | 0.485826 | 6_1:+98672737 | Msa0901830:CDS |
| GAGATCAATGGAGTGATTTG+TGG | 0.489764 | 6_1:+98672759 | Msa0901830:CDS |
| TGAGGTGGAGAATGAAGGTT+CGG | 0.491283 | 6_1:-98669463 | None:intergenic |
| ACAAACTCCACACATCTCTT+CGG | 0.492260 | 6_1:-98669546 | None:intergenic |
| GACGGTTGGTGGTGATGGTA+GGG | 0.492809 | 6_1:+98669650 | Msa0901830:CDS |
| GCGAAAGGTGTGACGGTTGG+TGG | 0.493522 | 6_1:+98669639 | Msa0901830:CDS |
| CTTTCTATAGAAACTCAAAC+TGG | 0.494167 | 6_1:-98672018 | None:intergenic |
| AGATCAATGGAGTGATTTGT+GGG | 0.501247 | 6_1:+98672760 | Msa0901830:CDS |
| CCACCTCATACTGCGACAGC+TGG | 0.503575 | 6_1:+98669478 | Msa0901830:CDS |
| GTGCCGTATTATCAAGATGT+TGG | 0.504430 | 6_1:+98669714 | Msa0901830:CDS |
| CGGCGATGGAAACCGTCGCC+CGG | 0.506039 | 6_1:+98669370 | Msa0901830:exon |
| GTGGAGAATGAAGGTTCGGA+GGG | 0.506528 | 6_1:-98669459 | None:intergenic |
| TCTCCACCACTCGCCGGCGA+TGG | 0.516471 | 6_1:+98669356 | Msa0901830:exon |
| TTTCCATCGCCGGCGAGTGG+TGG | 0.517034 | 6_1:-98669359 | None:intergenic |
| AACTCGCCGGAAAACTTCGC+CGG | 0.517161 | 6_1:+98669329 | Msa0901830:five_prime_UTR |
| ATGGAAGCTCCGGAGATCAA+TGG | 0.520805 | 6_1:+98672747 | Msa0901830:CDS |
| ATGAGGAGATGATGAAGAGG+AGG | 0.523968 | 6_1:-98669401 | None:intergenic |
| AGATGGATTGTGAGGTGGTG+GGG | 0.528294 | 6_1:+98669598 | Msa0901830:CDS |
| CTATAGAAACTCAAACTGGC+AGG | 0.535607 | 6_1:-98672014 | None:intergenic |
| CAGTATGAGGTGGAGAATGA+AGG | 0.542531 | 6_1:-98669468 | None:intergenic |
| GATTCGGGAGTTTAAAAGAC+CGG | 0.545316 | 6_1:-98672799 | None:intergenic |
| CAAATCACTCCATTGATCTC+CGG | 0.546234 | 6_1:-98672756 | None:intergenic |
| ACTCGCCGGAAAACTTCGCC+GGG | 0.547356 | 6_1:+98669330 | Msa0901830:five_prime_UTR |
| AGGTTCGGAGGGGAGGCGGA+TGG | 0.552950 | 6_1:-98669448 | None:intergenic |
| AGTGAAGGCTACAGAATCCA+TGG | 0.553055 | 6_1:+98672728 | Msa0901830:CDS |
| TAAGTTCACCCAATCATTGA+AGG | 0.553565 | 6_1:-98671973 | None:intergenic |
| TCGATGAGGAGATGATGAAG+AGG | 0.553957 | 6_1:-98669404 | None:intergenic |
| GCTTAACACACGAATTGAGA+TGG | 0.554819 | 6_1:+98672836 | Msa0901830:exon |
| GGATGGTTTGTGTTGAGATG+GGG | 0.555142 | 6_1:-98669431 | None:intergenic |
| TGAAGAGGAGGATTGTAAGC+CGG | 0.556548 | 6_1:-98669389 | None:intergenic |
| GAGGATTGTAAGCCGGGCGA+CGG | 0.564079 | 6_1:-98669382 | None:intergenic |
| AGAATGAAGGTTCGGAGGGG+AGG | 0.565022 | 6_1:-98669455 | None:intergenic |
| ACAGAGGCGCTTCTGATCAA+GGG | 0.566481 | 6_1:+98672660 | Msa0901830:intron |
| TGGTTTGTGTTGAGATGGGG+TGG | 0.568939 | 6_1:-98669428 | None:intergenic |
| CTGCGACAGCTGGAGATTAG+CGG | 0.573560 | 6_1:+98669488 | Msa0901830:CDS |
| AAGCAAACCTTCTATTTGCA+GGG | 0.580119 | 6_1:+98672108 | Msa0901830:CDS |
| CGACAAGAGTTGATGAGTGA+AGG | 0.580906 | 6_1:+98672713 | Msa0901830:CDS |
| ATTCGGGAGTTTAAAAGACC+GGG | 0.584061 | 6_1:-98672798 | None:intergenic |
| GGGAAATCTCCACCACTCGC+CGG | 0.585339 | 6_1:+98669350 | Msa0901830:five_prime_UTR |
| CGGTTTCCATCGCCGGCGAG+TGG | 0.587423 | 6_1:-98669362 | None:intergenic |
| GAGATGGATTGTGAGGTGGT+GGG | 0.588133 | 6_1:+98669597 | Msa0901830:CDS |
| GGCAGGTAAAGCTGGTGCAT+CGG | 0.602641 | 6_1:-98671997 | None:intergenic |
| CCAGCTGTCGCAGTATGAGG+TGG | 0.608859 | 6_1:-98669478 | None:intergenic |
| TTTGCGAAAGGTGTGACGGT+TGG | 0.609323 | 6_1:+98669636 | Msa0901830:CDS |
| GGTGGAGAATGAAGGTTCGG+AGG | 0.612292 | 6_1:-98669460 | None:intergenic |
| GGGGTTATGCAGTATCCACC+CGG | 0.631601 | 6_1:+98672780 | Msa0901830:CDS |
| TGTTAAGCAATAAAATACAT+CGG | 0.634647 | 6_1:-98672821 | None:intergenic |
| TTTGTGGCGGAGTATATGAT+CGG | 0.640485 | 6_1:+98669564 | Msa0901830:CDS |
| TGGAGAATGAAGGTTCGGAG+GGG | 0.642057 | 6_1:-98669458 | None:intergenic |
| CGAAACCAAACAAAACTCGC+CGG | 0.649394 | 6_1:+98669316 | Msa0901830:five_prime_UTR |
| GCAGATTCCGAAGAGATGTG+TGG | 0.649485 | 6_1:+98669539 | Msa0901830:CDS |
| AAAATATGAGATGGATTGTG+AGG | 0.649506 | 6_1:+98669590 | Msa0901830:CDS |
| TGAGTTTGCGAAAGGTGTGA+CGG | 0.667860 | 6_1:+98669632 | Msa0901830:CDS |
| CGGGAGTTTAAAAGACCGGG+TGG | 0.680725 | 6_1:-98672795 | None:intergenic |
| TGAGATGGGGTGGATCGATG+AGG | 0.693959 | 6_1:-98669418 | None:intergenic |
| GATCAATGGAGTGATTTGTG+GGG | 0.696759 | 6_1:+98672761 | Msa0901830:CDS |
| ATATGAGATGGATTGTGAGG+TGG | 0.699180 | 6_1:+98669593 | Msa0901830:CDS |
| GAGATGTGTGGAGTTTGTGG+CGG | 0.715091 | 6_1:+98669551 | Msa0901830:CDS |
| GCGGTGGAAACGAACAACGT+CGG | 0.730215 | 6_1:+98669507 | Msa0901830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTCAATTAATTACTT+TGG | + | chr6_1:98669813-98669832 | Msa0901830:intron | 10.0% |
| !! | AAAAAATGTTTAGTTAAAAA+TGG | - | chr6_1:98670747-98670766 | None:intergenic | 10.0% |
| !! | AAATATGAACAAAATTATAA+AGG | + | chr6_1:98671653-98671672 | Msa0901830:intron | 10.0% |
| !!! | ATAGTTAAGGTTTTAAATAA+CGG | + | chr6_1:98670008-98670027 | Msa0901830:intron | 15.0% |
| !! | TCTCAATTGAAAAAAATATA+AGG | + | chr6_1:98670189-98670208 | Msa0901830:intron | 15.0% |
| !! | AAAAATGGACAAATTATAAA+AGG | - | chr6_1:98670732-98670751 | None:intergenic | 15.0% |
| !!! | TTTTATACATAAATGTTAGT+AGG | + | chr6_1:98672219-98672238 | Msa0901830:intron | 15.0% |
| !! | ATGAATGAATAAAAATCCAA+CGG | - | chr6_1:98669762-98669781 | None:intergenic | 20.0% |
| !! | TATCTCAAAAAACATTGAAT+AGG | - | chr6_1:98669795-98669814 | None:intergenic | 20.0% |
| !! | TGATTAGTATAACAAACTTA+CGG | - | chr6_1:98669901-98669920 | None:intergenic | 20.0% |
| !! | AAAAGTTTGAGAAATAGTTA+AGG | + | chr6_1:98669995-98670014 | Msa0901830:intron | 20.0% |
| !! | TTATGTTCACTTTGTAAAAA+CGG | + | chr6_1:98670295-98670314 | Msa0901830:intron | 20.0% |
| !!! | ATGATCAAGGTTTTAAAAAT+CGG | - | chr6_1:98670372-98670391 | None:intergenic | 20.0% |
| !! | AGACTCATAAATCTTTATAT+TGG | - | chr6_1:98670954-98670973 | None:intergenic | 20.0% |
| !! | AGTATAACTCAAATGTTAAA+AGG | + | chr6_1:98670978-98670997 | Msa0901830:intron | 20.0% |
| !! | TCAATATATGTTTCATATCA+AGG | - | chr6_1:98671137-98671156 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAAAGCTCATGA+AGG | - | chr6_1:98671203-98671222 | None:intergenic | 20.0% |
| !! | AAGAGCTTATATTTATCTAA+TGG | + | chr6_1:98671254-98671273 | Msa0901830:intron | 20.0% |
| !! | TAGGAATAATATAATCGTAA+TGG | + | chr6_1:98671551-98671570 | Msa0901830:intron | 20.0% |
| !! | TAGTTTATATCAATAATCAC+TGG | + | chr6_1:98671599-98671618 | Msa0901830:intron | 20.0% |
| !! | TTAAGGTACATAAAAATTGT+TGG | + | chr6_1:98672155-98672174 | Msa0901830:intron | 20.0% |
| !! | GTTCTTAGAAAATATATGTA+TGG | + | chr6_1:98672177-98672196 | Msa0901830:intron | 20.0% |
| !!! | AATTTTTATGTACTCTTGAT+GGG | - | chr6_1:98672320-98672339 | None:intergenic | 20.0% |
| !! | TGTTAAGCAATAAAATACAT+CGG | - | chr6_1:98672824-98672843 | None:intergenic | 20.0% |
| !!! | AATTTTTCATTGTAAACAAC+AGG | + | chr6_1:98672902-98672921 | Msa0901830:three_prime_UTR | 20.0% |
| !!! | ATTTTTCATTGTAAACAACA+GGG | + | chr6_1:98672903-98672922 | Msa0901830:three_prime_UTR | 20.0% |
| !! | AATCCAACATCTTGATAATA+CGG | - | chr6_1:98669720-98669739 | None:intergenic | 25.0% |
| ! | TATTATCAAGATGTTGGATT+TGG | + | chr6_1:98669720-98669739 | Msa0901830:CDS | 25.0% |
| ! | ATTATCAAGATGTTGGATTT+GGG | + | chr6_1:98669721-98669740 | Msa0901830:CDS | 25.0% |
| ! | TTACTTTGGTTATATTAGTC+AGG | + | chr6_1:98669827-98669846 | Msa0901830:intron | 25.0% |
| ! | TTAAACAAGGACAATAAACA+AGG | + | chr6_1:98669940-98669959 | Msa0901830:intron | 25.0% |
| !!! | TCATGAATGACATTTTTTTG+CGG | + | chr6_1:98670227-98670246 | Msa0901830:intron | 25.0% |
| ! | AATAGAGGTTAGATTATAAG+TGG | + | chr6_1:98670453-98670472 | Msa0901830:intron | 25.0% |
| ! | ATAAGTGGTTCAATAAATGA+TGG | + | chr6_1:98670468-98670487 | Msa0901830:intron | 25.0% |
| !!! | TTTTTTTTTTACTCCTGGTA+AGG | - | chr6_1:98670564-98670583 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTTTTTTACTCC+TGG | - | chr6_1:98670569-98670588 | None:intergenic | 25.0% |
| !! | TCTAGGAGTATATGTATTTA+GGG | + | chr6_1:98670695-98670714 | Msa0901830:intron | 25.0% |
| ! | TAACTCAAATGTTAAAAGGA+TGG | + | chr6_1:98670982-98671001 | Msa0901830:intron | 25.0% |
| ! | ATATATGTTTCATATCAAGG+TGG | - | chr6_1:98671134-98671153 | None:intergenic | 25.0% |
| ! | TATTCATCAATGACTTCATA+AGG | - | chr6_1:98671833-98671852 | None:intergenic | 25.0% |
| ! | TTTGGATAAGTTCATTATGA+GGG | + | chr6_1:98671892-98671911 | Msa0901830:intron | 25.0% |
| ! | TATAGAAAGCTTCAAGAATT+GGG | + | chr6_1:98672032-98672051 | Msa0901830:CDS | 25.0% |
| !! | CAATTTTTATGTACTCTTGA+TGG | - | chr6_1:98672321-98672340 | None:intergenic | 25.0% |
| !! | CAAGAGTACATAAAAATTGT+TGG | + | chr6_1:98672322-98672341 | Msa0901830:intron | 25.0% |
| ! | ACAAAACGTACATAATTTCA+AGG | - | chr6_1:98672349-98672368 | None:intergenic | 25.0% |
| !!! | GTTAAGTTTTTCTTTGCTAT+AGG | + | chr6_1:98672372-98672391 | Msa0901830:intron | 25.0% |
| ! | CATGAAAAATGAATACAGAT+CGG | - | chr6_1:98672867-98672886 | None:intergenic | 25.0% |
| !! | AAAATATGAGATGGATTGTG+AGG | + | chr6_1:98669590-98669609 | Msa0901830:CDS | 30.0% |
| ACGAACAATGACATTAAACA+AGG | + | chr6_1:98669927-98669946 | Msa0901830:intron | 30.0% | |
| CTTTGTAAAAACGGTAATGT+CGG | + | chr6_1:98670304-98670323 | Msa0901830:intron | 30.0% | |
| ATAATCTAACCTCTATTGCA+AGG | - | chr6_1:98670450-98670469 | None:intergenic | 30.0% | |
| ! | TATCCATATTGTTAGCTTAC+AGG | - | chr6_1:98670495-98670514 | None:intergenic | 30.0% |
| AAATACATATACTCCTAGAG+TGG | - | chr6_1:98670694-98670713 | None:intergenic | 30.0% | |
| ! | CTCTAGGAGTATATGTATTT+AGG | + | chr6_1:98670694-98670713 | Msa0901830:intron | 30.0% |
| AGTACAGAAGTGAAAAATTG+CGG | + | chr6_1:98670800-98670819 | Msa0901830:intron | 30.0% | |
| ! | TTATATTGGTGATCACTGAT+TGG | - | chr6_1:98670940-98670959 | None:intergenic | 30.0% |
| TCAAATGTTAAAAGGATGGA+GGG | + | chr6_1:98670986-98671005 | Msa0901830:intron | 30.0% | |
| ACATTATATATGCTGGAATG+TGG | + | chr6_1:98671009-98671028 | Msa0901830:intron | 30.0% | |
| CATTATATATGCTGGAATGT+GGG | + | chr6_1:98671010-98671029 | Msa0901830:intron | 30.0% | |
| GTATAGAAGTGGAGAATTAT+GGG | - | chr6_1:98671042-98671061 | None:intergenic | 30.0% | |
| TGTATAGAAGTGGAGAATTA+TGG | - | chr6_1:98671043-98671062 | None:intergenic | 30.0% | |
| AGCTTATTCATACACTATTC+TGG | + | chr6_1:98671290-98671309 | Msa0901830:intron | 30.0% | |
| GAATGAAATTCGTTAGACAA+AGG | + | chr6_1:98671527-98671546 | Msa0901830:intron | 30.0% | |
| AAATTCGTTAGACAAAGGTT+AGG | + | chr6_1:98671532-98671551 | Msa0901830:intron | 30.0% | |
| GAAGAATGAAATGACATATG+AGG | + | chr6_1:98671677-98671696 | Msa0901830:intron | 30.0% | |
| CTTTGGATAAGTTCATTATG+AGG | + | chr6_1:98671891-98671910 | Msa0901830:intron | 30.0% | |
| TTATTTCACACTCTGATGTT+TGG | + | chr6_1:98671919-98671938 | Msa0901830:intron | 30.0% | |
| CTTTCTATAGAAACTCAAAC+TGG | - | chr6_1:98672021-98672040 | None:intergenic | 30.0% | |
| CTATAGAAAGCTTCAAGAAT+TGG | + | chr6_1:98672031-98672050 | Msa0901830:CDS | 30.0% | |
| TTCACAATATTTCTCTTGAC+TGG | + | chr6_1:98672056-98672075 | Msa0901830:CDS | 30.0% | |
| CAATAAAATACATCGGATTC+GGG | - | chr6_1:98672817-98672836 | None:intergenic | 30.0% | |
| GCAATAAAATACATCGGATT+CGG | - | chr6_1:98672818-98672837 | None:intergenic | 30.0% | |
| ! | ACCAAATGACTTGCATTATT+AGG | + | chr6_1:98673002-98673021 | Msa0901830:three_prime_UTR | 30.0% |
| ACCTAATAATGCAAGTCATT+TGG | - | chr6_1:98673006-98673025 | None:intergenic | 30.0% | |
| ! | AAACTGTTTTCTCACTTTAG+AGG | - | chr6_1:98673059-98673078 | None:intergenic | 30.0% |
| GATCGGAGAAAAATATGAGA+TGG | + | chr6_1:98669581-98669600 | Msa0901830:CDS | 35.0% | |
| ! | TTTTCTGATGAGTTTGCGAA+AGG | + | chr6_1:98669624-98669643 | Msa0901830:CDS | 35.0% |
| ! | CGTATAGGATTTTGCGATTT+CGG | + | chr6_1:98670040-98670059 | Msa0901830:intron | 35.0% |
| TATGATTGTTGCAGTTGTTG+CGG | + | chr6_1:98670081-98670100 | Msa0901830:intron | 35.0% | |
| !!! | ACATTTTTTTGCGGTCGTAA+TGG | + | chr6_1:98670236-98670255 | Msa0901830:intron | 35.0% |
| !!! | CTACCTATAGTTTTTTGTCG+CGG | + | chr6_1:98670327-98670346 | Msa0901830:intron | 35.0% |
| CTTCTCGACGTGAATAATAT+TGG | - | chr6_1:98670657-98670676 | None:intergenic | 35.0% | |
| ACTAATAACAGTACCACTCT+AGG | + | chr6_1:98670678-98670697 | Msa0901830:intron | 35.0% | |
| CTCAAATGTTAAAAGGATGG+AGG | + | chr6_1:98670985-98671004 | Msa0901830:intron | 35.0% | |
| ACATGCTAAGTGTATAGAAG+TGG | - | chr6_1:98671053-98671072 | None:intergenic | 35.0% | |
| CTATACACTTAGCATGTGTT+TGG | + | chr6_1:98671056-98671075 | Msa0901830:intron | 35.0% | |
| CAATGAGTATGCGAAAATCA+CGG | + | chr6_1:98671084-98671103 | Msa0901830:intron | 35.0% | |
| TCTGGAGATCTTATTGTATG+TGG | + | chr6_1:98671308-98671327 | Msa0901830:intron | 35.0% | |
| TCATCAACAAAGGGACATTA+GGG | - | chr6_1:98671440-98671459 | None:intergenic | 35.0% | |
| TTCATCAACAAAGGGACATT+AGG | - | chr6_1:98671441-98671460 | None:intergenic | 35.0% | |
| GGACTACTTTCATCAACAAA+GGG | - | chr6_1:98671449-98671468 | None:intergenic | 35.0% | |
| AGGACTACTTTCATCAACAA+AGG | - | chr6_1:98671450-98671469 | None:intergenic | 35.0% | |
| ATCCAGTATCAAATAGTCTG+AGG | - | chr6_1:98671475-98671494 | None:intergenic | 35.0% | |
| TATCCAAAGACACTTCTTGT+AGG | - | chr6_1:98671880-98671899 | None:intergenic | 35.0% | |
| ATTGAAGATTTCTGACCTGT+TGG | - | chr6_1:98671946-98671965 | None:intergenic | 35.0% | |
| ATGAGACATCCTTCAATGAT+TGG | + | chr6_1:98671964-98671983 | Msa0901830:CDS | 35.0% | |
| TGAGACATCCTTCAATGATT+GGG | + | chr6_1:98671965-98671984 | Msa0901830:CDS | 35.0% | |
| TAAGTTCACCCAATCATTGA+AGG | - | chr6_1:98671976-98671995 | None:intergenic | 35.0% | |
| AAGCAAACCTTCTATTTGCA+GGG | + | chr6_1:98672108-98672127 | Msa0901830:CDS | 35.0% | |
| TATTTGCAGGGTACAGAAAT+TGG | + | chr6_1:98672120-98672139 | Msa0901830:CDS | 35.0% | |
| ATTTGCAGGGTACAGAAATT+GGG | + | chr6_1:98672121-98672140 | Msa0901830:CDS | 35.0% | |
| !! | AATTCTAGAGTTCGAACTCT+TGG | - | chr6_1:98672263-98672282 | None:intergenic | 35.0% |
| TAACTCATTCCATGTCTCTT+AGG | + | chr6_1:98672291-98672310 | Msa0901830:intron | 35.0% | |
| AAACTCTTCCAGTTTGTCTT+AGG | + | chr6_1:98672458-98672477 | Msa0901830:intron | 35.0% | |
| CTGTAAAACACAAAGCTGAT+TGG | - | chr6_1:98672487-98672506 | None:intergenic | 35.0% | |
| !! | CAATCAGCTTTGTGTTTTAC+AGG | + | chr6_1:98672485-98672504 | Msa0901830:intron | 35.0% |
| !!! | ACACTGAACGAGTTTTAAGA+GGG | - | chr6_1:98672566-98672585 | None:intergenic | 35.0% |
| TAACAAAACATGTCCCAAGT+AGG | - | chr6_1:98672612-98672631 | None:intergenic | 35.0% | |
| AGTTCCTTGCAATTTAACAG+AGG | + | chr6_1:98672644-98672663 | Msa0901830:intron | 35.0% | |
| ! | AGATCAATGGAGTGATTTGT+GGG | + | chr6_1:98672760-98672779 | Msa0901830:CDS | 35.0% |
| ACAAACTCCACACATCTCTT+CGG | - | chr6_1:98669549-98669568 | None:intergenic | 40.0% | |
| ! | TTTGTGGCGGAGTATATGAT+CGG | + | chr6_1:98669564-98669583 | Msa0901830:CDS | 40.0% |
| !! | ATATGAGATGGATTGTGAGG+TGG | + | chr6_1:98669593-98669612 | Msa0901830:CDS | 40.0% |
| GTGCCGTATTATCAAGATGT+TGG | + | chr6_1:98669714-98669733 | Msa0901830:CDS | 40.0% | |
| !!! | GTATGTGCTTTTTTAGCCGT+TGG | + | chr6_1:98669743-98669762 | Msa0901830:intron | 40.0% |
| !!! | AAGGTTTTAAATAACGGCCG+CGG | + | chr6_1:98670014-98670033 | Msa0901830:intron | 40.0% |
| ! | TTTTGCGATTTCGGCTGTTA+TGG | + | chr6_1:98670049-98670068 | Msa0901830:intron | 40.0% |
| ATGATTGTTGCAGTTGTTGC+GGG | + | chr6_1:98670082-98670101 | Msa0901830:intron | 40.0% | |
| !! | GTGTTTTGTTGCGACTGTAA+CGG | + | chr6_1:98670258-98670277 | Msa0901830:intron | 40.0% |
| CAACACGACACTTATGATCA+AGG | - | chr6_1:98670385-98670404 | None:intergenic | 40.0% | |
| ! | CTTGATCATAAGTGTCGTGT+TGG | + | chr6_1:98670383-98670402 | Msa0901830:intron | 40.0% |
| ! | TTCTATCTAAAGGTGTGACC+CGG | - | chr6_1:98670423-98670442 | None:intergenic | 40.0% |
| GCAAGGACACTTCTATCTAA+AGG | - | chr6_1:98670433-98670452 | None:intergenic | 40.0% | |
| !! | TAGAAGTGTCCTTGCAATAG+AGG | + | chr6_1:98670438-98670457 | Msa0901830:intron | 40.0% |
| GGTCCTGTAAGCTAACAATA+TGG | + | chr6_1:98670489-98670508 | Msa0901830:intron | 40.0% | |
| ATCCAGACAAAAACCTTACC+AGG | + | chr6_1:98670548-98670567 | Msa0901830:intron | 40.0% | |
| TGGAGGGACATTATATATGC+TGG | + | chr6_1:98671002-98671021 | Msa0901830:intron | 40.0% | |
| TGGATATGTCAGAATCACAG+TGG | - | chr6_1:98671114-98671133 | None:intergenic | 40.0% | |
| ! | GTATCAAATAGTCTGAGGTG+AGG | - | chr6_1:98671470-98671489 | None:intergenic | 40.0% |
| CACCTCAGACTATTTGATAC+TGG | + | chr6_1:98671470-98671489 | Msa0901830:intron | 40.0% | |
| CAAGTCCTTATGCATACTTG+TGG | + | chr6_1:98671799-98671818 | Msa0901830:intron | 40.0% | |
| TCATGCCACAAGTATGCATA+AGG | - | chr6_1:98671807-98671826 | None:intergenic | 40.0% | |
| !! | TAGCCTACAAGAAGTGTCTT+TGG | + | chr6_1:98671874-98671893 | Msa0901830:intron | 40.0% |
| CTATAGAAACTCAAACTGGC+AGG | - | chr6_1:98672017-98672036 | None:intergenic | 40.0% | |
| GAAGCAAACCTTCTATTTGC+AGG | + | chr6_1:98672107-98672126 | Msa0901830:CDS | 40.0% | |
| TTCTGTACCCTGCAAATAGA+AGG | - | chr6_1:98672118-98672137 | None:intergenic | 40.0% | |
| ATTGGGAGAGACTCATCTTA+AGG | + | chr6_1:98672138-98672157 | Msa0901830:CDS | 40.0% | |
| ! | AGAGTTTTACGCAGAAGTCT+TGG | - | chr6_1:98672445-98672464 | None:intergenic | 40.0% |
| ! | ATTGGTGACCTAAGACAAAC+TGG | - | chr6_1:98672469-98672488 | None:intergenic | 40.0% |
| !!! | GACACTGAACGAGTTTTAAG+AGG | - | chr6_1:98672567-98672586 | None:intergenic | 40.0% |
| AAACTCGTTCAGTGTCTCTT+AGG | + | chr6_1:98672571-98672590 | Msa0901830:intron | 40.0% | |
| CAAATCACTCCATTGATCTC+CGG | - | chr6_1:98672759-98672778 | None:intergenic | 40.0% | |
| GAGATCAATGGAGTGATTTG+TGG | + | chr6_1:98672759-98672778 | Msa0901830:CDS | 40.0% | |
| ! | GATCAATGGAGTGATTTGTG+GGG | + | chr6_1:98672761-98672780 | Msa0901830:CDS | 40.0% |
| ATTCGGGAGTTTAAAAGACC+GGG | - | chr6_1:98672801-98672820 | None:intergenic | 40.0% | |
| GATTCGGGAGTTTAAAAGAC+CGG | - | chr6_1:98672802-98672821 | None:intergenic | 40.0% | |
| GCTTAACACACGAATTGAGA+TGG | + | chr6_1:98672836-98672855 | Msa0901830:exon | 40.0% | |
| AAGTGAATCGATCACTCTAC+TGG | + | chr6_1:98673140-98673159 | Msa0901830:three_prime_UTR | 40.0% | |
| CGAAACCAAACAAAACTCGC+CGG | + | chr6_1:98669316-98669335 | Msa0901830:five_prime_UTR | 45.0% | |
| !!! | GTTTTCCGGCGAGTTTTGTT+TGG | - | chr6_1:98669324-98669343 | None:intergenic | 45.0% |
| TGAAGAGGAGGATTGTAAGC+CGG | - | chr6_1:98669392-98669411 | None:intergenic | 45.0% | |
| ATGAGGAGATGATGAAGAGG+AGG | - | chr6_1:98669404-98669423 | None:intergenic | 45.0% | |
| TCGATGAGGAGATGATGAAG+AGG | - | chr6_1:98669407-98669426 | None:intergenic | 45.0% | |
| ! | GGATGGTTTGTGTTGAGATG+GGG | - | chr6_1:98669434-98669453 | None:intergenic | 45.0% |
| ! | CGGATGGTTTGTGTTGAGAT+GGG | - | chr6_1:98669435-98669454 | None:intergenic | 45.0% |
| TGAGGTGGAGAATGAAGGTT+CGG | - | chr6_1:98669466-98669485 | None:intergenic | 45.0% | |
| CAGTATGAGGTGGAGAATGA+AGG | - | chr6_1:98669471-98669490 | None:intergenic | 45.0% | |
| AAACGAACAACGTCGGAGAA+TGG | + | chr6_1:98669514-98669533 | Msa0901830:CDS | 45.0% | |
| GAAGAGATGTGTGGAGTTTG+TGG | + | chr6_1:98669548-98669567 | Msa0901830:CDS | 45.0% | |
| ! | TGAGTTTGCGAAAGGTGTGA+CGG | + | chr6_1:98669632-98669651 | Msa0901830:CDS | 45.0% |
| TGATTGTTGCAGTTGTTGCG+GGG | + | chr6_1:98670083-98670102 | Msa0901830:intron | 45.0% | |
| AGGCCGCGACAAAAAACTAT+AGG | - | chr6_1:98670333-98670352 | None:intergenic | 45.0% | |
| ! | CTCCTGGTAAGGTTTTTGTC+TGG | - | chr6_1:98670553-98670572 | None:intergenic | 45.0% |
| ACTCTGATGTTTGGACCAAC+AGG | + | chr6_1:98671928-98671947 | Msa0901830:intron | 45.0% | |
| ACTAACCGAGCTTCCTACTT+GGG | + | chr6_1:98672596-98672615 | Msa0901830:intron | 45.0% | |
| AGCGCCTCTGTTAAATTGCA+AGG | - | chr6_1:98672651-98672670 | None:intergenic | 45.0% | |
| !! | CGACAAGAGTTGATGAGTGA+AGG | + | chr6_1:98672713-98672732 | Msa0901830:CDS | 45.0% |
| AGTGAAGGCTACAGAATCCA+TGG | + | chr6_1:98672728-98672747 | Msa0901830:CDS | 45.0% | |
| TACAGAATCCATGGAAGCTC+CGG | + | chr6_1:98672737-98672756 | Msa0901830:CDS | 45.0% | |
| !!! | TAATAATTTTTTTTTTGAAT+CGG | + | chr6_1:98670631-98670650 | Msa0901830:intron | 5.0% |
| ! | GATTTCCCGGCGAAGTTTTC+CGG | - | chr6_1:98669338-98669357 | None:intergenic | 50.0% |
| GAAGAGGAGGATTGTAAGCC+GGG | - | chr6_1:98669391-98669410 | None:intergenic | 50.0% | |
| ! | TGGTTTGTGTTGAGATGGGG+TGG | - | chr6_1:98669431-98669450 | None:intergenic | 50.0% |
| ! | GCGGATGGTTTGTGTTGAGA+TGG | - | chr6_1:98669436-98669455 | None:intergenic | 50.0% |
| TGGAGAATGAAGGTTCGGAG+GGG | - | chr6_1:98669461-98669480 | None:intergenic | 50.0% | |
| GTGGAGAATGAAGGTTCGGA+GGG | - | chr6_1:98669462-98669481 | None:intergenic | 50.0% | |
| GCAGATTCCGAAGAGATGTG+TGG | + | chr6_1:98669539-98669558 | Msa0901830:CDS | 50.0% | |
| GAGATGTGTGGAGTTTGTGG+CGG | + | chr6_1:98669551-98669570 | Msa0901830:CDS | 50.0% | |
| !! | TGAGATGGATTGTGAGGTGG+TGG | + | chr6_1:98669596-98669615 | Msa0901830:CDS | 50.0% |
| !! | GAGATGGATTGTGAGGTGGT+GGG | + | chr6_1:98669597-98669616 | Msa0901830:CDS | 50.0% |
| !! | AGATGGATTGTGAGGTGGTG+GGG | + | chr6_1:98669598-98669617 | Msa0901830:CDS | 50.0% |
| ! | TTTGCGAAAGGTGTGACGGT+TGG | + | chr6_1:98669636-98669655 | Msa0901830:CDS | 50.0% |
| !! | TGGTGATGGTAGGGATGCTT+GGG | + | chr6_1:98669659-98669678 | Msa0901830:CDS | 50.0% |
| CAAAATCCTATACGCGACCG+CGG | - | chr6_1:98670034-98670053 | None:intergenic | 50.0% | |
| TCGGTCCGTTCTCGAGAAAA+AGG | - | chr6_1:98670353-98670372 | None:intergenic | 50.0% | |
| CTCAAACTGGCAGGTAAAGC+TGG | - | chr6_1:98672008-98672027 | None:intergenic | 50.0% | |
| GATGGGTGACCTAAGAGACA+TGG | - | chr6_1:98672303-98672322 | None:intergenic | 50.0% | |
| CAAGTAGGAAGCTCGGTTAG+TGG | - | chr6_1:98672597-98672616 | None:intergenic | 50.0% | |
| CACTAACCGAGCTTCCTACT+TGG | + | chr6_1:98672595-98672614 | Msa0901830:intron | 50.0% | |
| CATGTCCCAAGTAGGAAGCT+CGG | - | chr6_1:98672604-98672623 | None:intergenic | 50.0% | |
| !! | AACAGAGGCGCTTCTGATCA+AGG | + | chr6_1:98672659-98672678 | Msa0901830:intron | 50.0% |
| !! | ACAGAGGCGCTTCTGATCAA+GGG | + | chr6_1:98672660-98672679 | Msa0901830:intron | 50.0% |
| ATTGATCTCCGGAGCTTCCA+TGG | - | chr6_1:98672748-98672767 | None:intergenic | 50.0% | |
| ATGGAAGCTCCGGAGATCAA+TGG | + | chr6_1:98672747-98672766 | Msa0901830:CDS | 50.0% | |
| AACTCGCCGGAAAACTTCGC+CGG | + | chr6_1:98669329-98669348 | Msa0901830:five_prime_UTR | 55.0% | |
| TGAGATGGGGTGGATCGATG+AGG | - | chr6_1:98669421-98669440 | None:intergenic | 55.0% | |
| AGAATGAAGGTTCGGAGGGG+AGG | - | chr6_1:98669458-98669477 | None:intergenic | 55.0% | |
| GGTGGAGAATGAAGGTTCGG+AGG | - | chr6_1:98669463-98669482 | None:intergenic | 55.0% | |
| TCTCCAGCTGTCGCAGTATG+AGG | - | chr6_1:98669484-98669503 | None:intergenic | 55.0% | |
| CTGCGACAGCTGGAGATTAG+CGG | + | chr6_1:98669488-98669507 | Msa0901830:CDS | 55.0% | |
| GCGGTGGAAACGAACAACGT+CGG | + | chr6_1:98669507-98669526 | Msa0901830:CDS | 55.0% | |
| !! | TGACGGTTGGTGGTGATGGT+AGG | + | chr6_1:98669649-98669668 | Msa0901830:CDS | 55.0% |
| !! | GACGGTTGGTGGTGATGGTA+GGG | + | chr6_1:98669650-98669669 | Msa0901830:CDS | 55.0% |
| !! | GTGGTGATGGTAGGGATGCT+TGG | + | chr6_1:98669658-98669677 | Msa0901830:CDS | 55.0% |
| ! | CGCGGCCTTTTTCTCGAGAA+CGG | + | chr6_1:98670345-98670364 | Msa0901830:intron | 55.0% |
| GTGTCGTGTTGGACACGTGT+CGG | + | chr6_1:98670394-98670413 | Msa0901830:intron | 55.0% | |
| GGCAGGTAAAGCTGGTGCAT+CGG | - | chr6_1:98672000-98672019 | None:intergenic | 55.0% | |
| GGGGTTATGCAGTATCCACC+CGG | + | chr6_1:98672780-98672799 | Msa0901830:CDS | 55.0% | |
| CGGGAGTTTAAAAGACCGGG+TGG | - | chr6_1:98672798-98672817 | None:intergenic | 55.0% | |
| ACTCGCCGGAAAACTTCGCC+GGG | + | chr6_1:98669330-98669349 | Msa0901830:five_prime_UTR | 60.0% | |
| ! | GGCGAGTGGTGGAGATTTCC+CGG | - | chr6_1:98669351-98669370 | None:intergenic | 60.0% |
| GGGAAATCTCCACCACTCGC+CGG | + | chr6_1:98669350-98669369 | Msa0901830:five_prime_UTR | 60.0% | |
| GAGGATTGTAAGCCGGGCGA+CGG | - | chr6_1:98669385-98669404 | None:intergenic | 60.0% | |
| ATGAAGGTTCGGAGGGGAGG+CGG | - | chr6_1:98669455-98669474 | None:intergenic | 60.0% | |
| CCAGCTGTCGCAGTATGAGG+TGG | - | chr6_1:98669481-98669500 | None:intergenic | 60.0% | |
| CCACCTCATACTGCGACAGC+TGG | + | chr6_1:98669478-98669497 | Msa0901830:CDS | 60.0% | |
| CGACAGCTGGAGATTAGCGG+TGG | + | chr6_1:98669491-98669510 | Msa0901830:CDS | 60.0% | |
| ! | GCGAAAGGTGTGACGGTTGG+TGG | + | chr6_1:98669639-98669658 | Msa0901830:CDS | 60.0% |
| !! | GGTGTGACGGTTGGTGGTGA+TGG | + | chr6_1:98669645-98669664 | Msa0901830:CDS | 60.0% |
| ! | GTTGGACACGTGTCGGTGAC+CGG | + | chr6_1:98670401-98670420 | Msa0901830:intron | 60.0% |
| ! | TTGGACACGTGTCGGTGACC+GGG | + | chr6_1:98670402-98670421 | Msa0901830:intron | 60.0% |
| TTTCCATCGCCGGCGAGTGG+TGG | - | chr6_1:98669362-98669381 | None:intergenic | 65.0% | |
| TAACGGCCGCGGTCGCGTAT+AGG | + | chr6_1:98670025-98670044 | Msa0901830:intron | 65.0% | |
| TCTCCACCACTCGCCGGCGA+TGG | + | chr6_1:98669356-98669375 | Msa0901830:exon | 70.0% | |
| CGGTTTCCATCGCCGGCGAG+TGG | - | chr6_1:98669365-98669384 | None:intergenic | 70.0% | |
| CGGGCGACGGTTTCCATCGC+CGG | - | chr6_1:98669372-98669391 | None:intergenic | 70.0% | |
| CGGCGATGGAAACCGTCGCC+CGG | + | chr6_1:98669370-98669389 | Msa0901830:exon | 70.0% | |
| AGGTTCGGAGGGGAGGCGGA+TGG | - | chr6_1:98669451-98669470 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98669288 | 98673165 | 98669288 | ID=Msa0901830;Name=Msa0901830 |
| chr6_1 | mRNA | 98669288 | 98673165 | 98669288 | ID=Msa0901830-mRNA-1;Parent=Msa0901830;Name=Msa0901830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=87|1|1|1|1|1|3|324|251 |
| chr6_1 | exon | 98669288 | 98669742 | 98669288 | ID=Msa0901830-mRNA-1:exon:17407;Parent=Msa0901830-mRNA-1 |
| chr6_1 | exon | 98671950 | 98672159 | 98671950 | ID=Msa0901830-mRNA-1:exon:17408;Parent=Msa0901830-mRNA-1 |
| chr6_1 | exon | 98672664 | 98673165 | 98672664 | ID=Msa0901830-mRNA-1:exon:17409;Parent=Msa0901830-mRNA-1 |
| chr6_1 | five_prime_UTR | 98669288 | 98669374 | 98669288 | ID=Msa0901830-mRNA-1:five_prime_utr;Parent=Msa0901830-mRNA-1 |
| chr6_1 | CDS | 98669375 | 98669742 | 98669375 | ID=Msa0901830-mRNA-1:cds;Parent=Msa0901830-mRNA-1 |
| chr6_1 | CDS | 98671950 | 98672159 | 98671950 | ID=Msa0901830-mRNA-1:cds;Parent=Msa0901830-mRNA-1 |
| chr6_1 | CDS | 98672664 | 98672841 | 98672664 | ID=Msa0901830-mRNA-1:cds;Parent=Msa0901830-mRNA-1 |
| chr6_1 | three_prime_UTR | 98672842 | 98673165 | 98672842 | ID=Msa0901830-mRNA-1:three_prime_utr;Parent=Msa0901830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
