Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970310 | XP_013450738.2 | 97.772 | 359 | 7 | 1 | 5 | 363 | 1 | 358 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970310 | sp|Q40784|AAPC_CENCI | 58.389 | 298 | 119 | 4 | 69 | 361 | 32 | 329 | 6.03e-118 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970310 | A0A072U4Z1 | 98.300 | 353 | 5 | 1 | 11 | 363 | 1 | 352 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0969820 | Msa0970310 | 0.879085 | 1.661605e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970310 | MtrunA17_Chr6g0449291 | 98.689 | 305 | 4 | 0 | 59 | 363 | 1 | 305 | 0.0 | 625 |
| Msa0970310 | MtrunA17_Chr2g0298101 | 60.870 | 299 | 112 | 4 | 68 | 361 | 19 | 317 | 6.40e-129 | 372 |
| Msa0970310 | MtrunA17_Chr7g0275331 | 55.290 | 293 | 127 | 3 | 65 | 353 | 18 | 310 | 6.90e-117 | 341 |
| Msa0970310 | MtrunA17_Chr4g0049381 | 54.949 | 293 | 128 | 3 | 65 | 353 | 18 | 310 | 1.25e-114 | 335 |
| Msa0970310 | MtrunA17_Chr5g0396951 | 53.448 | 290 | 132 | 3 | 61 | 347 | 15 | 304 | 1.24e-112 | 330 |
| Msa0970310 | MtrunA17_Chr4g0000451 | 65.574 | 183 | 60 | 2 | 181 | 360 | 6 | 188 | 2.84e-83 | 251 |
| Msa0970310 | MtrunA17_Chr5g0404381 | 31.359 | 287 | 179 | 7 | 59 | 342 | 39 | 310 | 5.40e-35 | 130 |
| Msa0970310 | MtrunA17_Chr4g0000441 | 43.066 | 137 | 77 | 1 | 42 | 177 | 7 | 143 | 2.32e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970310 | AT5G14500.1 | 69.737 | 304 | 91 | 1 | 59 | 361 | 1 | 304 | 9.39e-159 | 447 |
| Msa0970310 | AT3G01590.1 | 68.750 | 304 | 94 | 1 | 59 | 361 | 1 | 304 | 4.90e-156 | 441 |
| Msa0970310 | AT3G01590.2 | 68.750 | 304 | 94 | 1 | 59 | 361 | 1 | 304 | 4.90e-156 | 441 |
| Msa0970310 | AT5G14500.2 | 64.438 | 329 | 91 | 2 | 59 | 361 | 1 | 329 | 2.69e-152 | 432 |
| Msa0970310 | AT5G57330.1 | 60.403 | 298 | 111 | 5 | 68 | 359 | 15 | 311 | 5.53e-124 | 360 |
| Msa0970310 | AT3G61610.1 | 53.041 | 296 | 135 | 3 | 63 | 354 | 16 | 311 | 1.86e-111 | 328 |
| Msa0970310 | AT3G61610.2 | 53.041 | 296 | 135 | 3 | 63 | 354 | 10 | 305 | 2.09e-111 | 327 |
| Msa0970310 | AT4G23730.1 | 52.740 | 292 | 133 | 3 | 61 | 347 | 15 | 306 | 4.62e-107 | 316 |
| Msa0970310 | AT4G23730.3 | 52.013 | 298 | 132 | 4 | 61 | 347 | 15 | 312 | 3.42e-105 | 312 |
| Msa0970310 | AT4G23730.2 | 54.647 | 269 | 117 | 3 | 84 | 347 | 3 | 271 | 3.07e-101 | 300 |
| Msa0970310 | AT4G25900.1 | 48.227 | 282 | 140 | 4 | 68 | 347 | 38 | 315 | 3.58e-91 | 276 |
| Msa0970310 | AT5G66530.4 | 31.488 | 289 | 172 | 9 | 61 | 342 | 8 | 277 | 1.21e-34 | 129 |
| Msa0970310 | AT5G66530.1 | 31.228 | 285 | 178 | 8 | 61 | 342 | 36 | 305 | 2.85e-34 | 128 |
| Msa0970310 | AT5G66530.2 | 31.228 | 285 | 178 | 8 | 61 | 342 | 36 | 305 | 2.85e-34 | 128 |
| Msa0970310 | AT5G66530.3 | 31.228 | 285 | 178 | 8 | 61 | 342 | 36 | 305 | 2.85e-34 | 128 |
Find 88 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTCTTTATCGTAATTTA+TGG | 0.093751 | 6_4:-1778568 | None:intergenic |
| GATCCTCGTCGAGTTCTTTA+TGG | 0.207407 | 6_4:+1778190 | Msa0970310:CDS |
| TTCAAAGGCATCTGTATAAT+TGG | 0.207577 | 6_4:-1775957 | None:intergenic |
| GGCTAAAGCTCTACCTGATT+TGG | 0.261406 | 6_4:+1778030 | Msa0970310:CDS |
| AAACATAAAGTGAGGATAAA+AGG | 0.265244 | 6_4:-1778604 | None:intergenic |
| TTTCTACTGAACAGGCTAAA+TGG | 0.267382 | 6_4:+1776877 | Msa0970310:intron |
| AGACTATAGTTTCTCTTCAT+AGG | 0.288061 | 6_4:+1778319 | Msa0970310:three_prime_UTR |
| TGGTTTCAGGTGCTTCTATA+TGG | 0.300749 | 6_4:+1776632 | Msa0970310:intron |
| TCACATGGCTTCAAGATAAT+AGG | 0.304789 | 6_4:-1778106 | None:intergenic |
| AGTGAAAATGCAAAAGAAAA+TGG | 0.307262 | 6_4:-1777464 | None:intergenic |
| CATCTGGAAGTGAATTCTTC+TGG | 0.316198 | 6_4:-1777883 | None:intergenic |
| ATGGAATCCATGGAATAAAA+AGG | 0.317111 | 6_4:+1778009 | Msa0970310:CDS |
| GCTGATGCAATTACATTTGA+TGG | 0.318284 | 6_4:+1777709 | Msa0970310:CDS |
| ATGGAGGGCATATTGTTTCT+TGG | 0.327788 | 6_4:+1776651 | Msa0970310:CDS |
| ATATGTATACACAGCATTAC+TGG | 0.330966 | 6_4:-1778538 | None:intergenic |
| GAAACTATAGTCTATATATA+TGG | 0.350330 | 6_4:-1778309 | None:intergenic |
| ATGAAATTGAGAACATTGTT+TGG | 0.367606 | 6_4:+1775834 | Msa0970310:CDS |
| CTTTCACTCTTCTCCAATCC+AGG | 0.376719 | 6_4:-1775878 | None:intergenic |
| CACAAGGCTACAAAATTTGC+AGG | 0.384553 | 6_4:-1778633 | None:intergenic |
| ACAGATGAATGATTGTCTAT+TGG | 0.398461 | 6_4:-1777148 | None:intergenic |
| AAGCTATTGCAGTGGACAAT+TGG | 0.406866 | 6_4:+1778168 | Msa0970310:CDS |
| ATATTATGTTGATGTTGTTA+TGG | 0.408797 | 6_4:+1775799 | Msa0970310:CDS |
| TAATTATTGTAAGGTGGAAA+AGG | 0.409830 | 6_4:-1778418 | None:intergenic |
| AACATCTCTTAATTATTGTA+AGG | 0.410691 | 6_4:-1778427 | None:intergenic |
| GCTAAAGCTCTACCTGATTT+GGG | 0.410922 | 6_4:+1778031 | Msa0970310:CDS |
| TTTCTTCTCATGATCTATGA+TGG | 0.415275 | 6_4:-1777846 | None:intergenic |
| TAATCATCAACTCCCAAATC+AGG | 0.419942 | 6_4:-1778043 | None:intergenic |
| GACTATAGTTTCTCTTCATA+GGG | 0.421777 | 6_4:+1778320 | Msa0970310:three_prime_UTR |
| CACATGGAATGACAAGAAAC+AGG | 0.427401 | 6_4:+1777089 | Msa0970310:CDS |
| TGAGTAATTCAAGAGCATTA+AGG | 0.428845 | 6_4:+1775913 | Msa0970310:CDS |
| AATTATTGTAAGGTGGAAAA+GGG | 0.431474 | 6_4:-1778417 | None:intergenic |
| GCTCTTGAATTACTCACAAA+TGG | 0.432943 | 6_4:-1775906 | None:intergenic |
| AATGTATTTCAAGACAAAGA+TGG | 0.433363 | 6_4:+1775978 | Msa0970310:CDS |
| AACTAATAGTAACCTGCATC+TGG | 0.440068 | 6_4:-1777899 | None:intergenic |
| GGATCAGTCAATACAATCCT+TGG | 0.445366 | 6_4:-1776005 | None:intergenic |
| AAGAAACAGGATGTGGTCAT+TGG | 0.451987 | 6_4:+1777102 | Msa0970310:CDS |
| TTTCAGTGAACTGTAATTGA+TGG | 0.453083 | 6_4:+1778214 | Msa0970310:exon |
| GATTTGATATTAAAGTCAAC+AGG | 0.453233 | 6_4:+1777172 | Msa0970310:CDS |
| ACCTCAGCTGATGAACCATT+TGG | 0.455672 | 6_4:-1776026 | None:intergenic |
| TTGTCTTGAAATACATTCAA+AGG | 0.463676 | 6_4:-1775972 | None:intergenic |
| GTGATAAGAGTGCAGTTGTA+TGG | 0.466146 | 6_4:+1777990 | Msa0970310:intron |
| GTTGATGTTGTTATGGTGGA+TGG | 0.474269 | 6_4:+1775806 | Msa0970310:CDS |
| TTATCAGTGTTTCTGACTCT+AGG | 0.478385 | 6_4:-1777437 | None:intergenic |
| ACATATGATGCATACCTTCG+TGG | 0.480527 | 6_4:-1777211 | None:intergenic |
| ATTGGTTGCAGAACCTGGAT+TGG | 0.488869 | 6_4:+1775865 | Msa0970310:CDS |
| CAGATCAAGATTCACAGAAC+AGG | 0.492587 | 6_4:+1777687 | Msa0970310:CDS |
| GTGTTGCAGTTTGGTGATGT+TGG | 0.494871 | 6_4:+1777055 | Msa0970310:intron |
| TCTTGAAGCCATGTGAAGAA+TGG | 0.498380 | 6_4:+1778113 | Msa0970310:CDS |
| AAGAATTCACTTCCAGATGC+AGG | 0.502151 | 6_4:+1777887 | Msa0970310:CDS |
| TTCAGGTGCTTCTATATGGA+GGG | 0.504410 | 6_4:+1776636 | Msa0970310:intron |
| ATGTTATCGTATCCACCTAT+CGG | 0.511839 | 6_4:-1778390 | None:intergenic |
| GATGAATGATTGTCTATTGG+AGG | 0.517054 | 6_4:-1777145 | None:intergenic |
| TGCAATTACATTTGATGGAG+AGG | 0.525933 | 6_4:+1777714 | Msa0970310:CDS |
| TAGCCCTTCCATTCTTCACA+TGG | 0.529103 | 6_4:-1778121 | None:intergenic |
| GTGCAGTTGTATGGAATCCA+TGG | 0.531959 | 6_4:+1777999 | Msa0970310:intron |
| ATCTCTTAATTATTGTAAGG+TGG | 0.534200 | 6_4:-1778424 | None:intergenic |
| ATTGTATTGACTGATCCAAA+TGG | 0.534205 | 6_4:+1776011 | Msa0970310:CDS |
| ATCAATGTCATTCCGATAGG+TGG | 0.535117 | 6_4:+1778378 | Msa0970310:three_prime_UTR |
| TTGTTTCTTGGAAGAATCAA+AGG | 0.540471 | 6_4:+1776663 | Msa0970310:CDS |
| TCTATTGGAGGTAGTGGTGA+AGG | 0.541685 | 6_4:-1777133 | None:intergenic |
| TTATGTTGATGTTGTTATGG+TGG | 0.541988 | 6_4:+1775802 | Msa0970310:CDS |
| TGATTGTCTATTGGAGGTAG+TGG | 0.547520 | 6_4:-1777139 | None:intergenic |
| GTATATCAGCTTGCTTCGCA+CGG | 0.554586 | 6_4:+1776925 | Msa0970310:CDS |
| GAAGCCATGTGAAGAATGGA+AGG | 0.558681 | 6_4:+1778117 | Msa0970310:CDS |
| TGCAGTGAAGTGCGTATCGA+GGG | 0.559173 | 6_4:+1777628 | Msa0970310:intron |
| CTATTGGAGGTAGTGGTGAA+GGG | 0.565619 | 6_4:-1777132 | None:intergenic |
| CACACCTCATTGCTGTCTCA+AGG | 0.577373 | 6_4:-1778351 | None:intergenic |
| CTTAGGATATCTCTAAGTGC+TGG | 0.578744 | 6_4:+1777398 | Msa0970310:CDS |
| GCTAAGCAATTGTCATAGCA+TGG | 0.581178 | 6_4:-1778463 | None:intergenic |
| TATATCAGCTTGCTTCGCAC+GGG | 0.583439 | 6_4:+1776926 | Msa0970310:CDS |
| TTTCAGGTGCTTCTATATGG+AGG | 0.583536 | 6_4:+1776635 | Msa0970310:intron |
| AAGACAAAGATGGATTGCCA+AGG | 0.592129 | 6_4:+1775988 | Msa0970310:CDS |
| TTGATCAATGTCATTCCGAT+AGG | 0.612608 | 6_4:+1778375 | Msa0970310:three_prime_UTR |
| GAATGACAAGAAACAGGATG+TGG | 0.614717 | 6_4:+1777095 | Msa0970310:CDS |
| TTCTTGGAAGAATCAAAGGA+AGG | 0.617206 | 6_4:+1776667 | Msa0970310:CDS |
| GTGCAGTGAAGTGCGTATCG+AGG | 0.625522 | 6_4:+1777627 | Msa0970310:intron |
| TCCAAATGGTTCATCAGCTG+AGG | 0.630236 | 6_4:+1776025 | Msa0970310:CDS |
| AATAGACAATCATTCATCTG+TGG | 0.635597 | 6_4:+1777150 | Msa0970310:CDS |
| GTTTCATCAAGCTATTGCAG+TGG | 0.637223 | 6_4:+1778160 | Msa0970310:CDS |
| AAACAACATAAAGCAATCAG+AGG | 0.644716 | 6_4:+1776900 | Msa0970310:CDS |
| GGTTCTCCAAACATAAAGTG+AGG | 0.647546 | 6_4:-1778612 | None:intergenic |
| CAACATAAAGCAATCAGAGG+AGG | 0.656588 | 6_4:+1776903 | Msa0970310:CDS |
| AAAACATGTTCATGATCACA+AGG | 0.661656 | 6_4:-1778649 | None:intergenic |
| AAGCCATGTGAAGAATGGAA+GGG | 0.663507 | 6_4:+1778118 | Msa0970310:CDS |
| GTTGGTTCACTTGAGACACA+TGG | 0.677188 | 6_4:+1777073 | Msa0970310:CDS |
| ATTGCCTTGAGACAGCAATG+AGG | 0.718659 | 6_4:+1778347 | Msa0970310:three_prime_UTR |
| TTGACTTAAAGACGCCACGA+AGG | 0.719729 | 6_4:+1777197 | Msa0970310:CDS |
| AAACCATAAAGAACTCGACG+AGG | 0.748460 | 6_4:-1778193 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGACTTAAATTTATCTTT+TGG | - | chr6_4:1776215-1776234 | None:intergenic | 15.0% |
| !! | TATAAATAACCAAAATACTA+AGG | - | chr6_4:1777576-1777595 | None:intergenic | 15.0% |
| !! | ATATTATGTTGATGTTGTTA+TGG | + | chr6_4:1775799-1775818 | Msa0970310:CDS | 20.0% |
| !! | ACAAAAAATACTATCATGTT+AGG | - | chr6_4:1776093-1776112 | None:intergenic | 20.0% |
| !! | AAAGATTATTATTCAAGGTA+TGG | - | chr6_4:1776432-1776451 | None:intergenic | 20.0% |
| !! | AGTCAAAAGATTATTATTCA+AGG | - | chr6_4:1776437-1776456 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTCAAAATTATA+AGG | - | chr6_4:1776510-1776529 | None:intergenic | 20.0% |
| !! | TTCCATCATCAAATATTATT+TGG | + | chr6_4:1776533-1776552 | Msa0970310:intron | 20.0% |
| !!! | TTGTCTAAGTTTTAAAATGA+TGG | + | chr6_4:1776566-1776585 | Msa0970310:intron | 20.0% |
| !!! | AATAAAGCTTTTGAAACATA+TGG | + | chr6_4:1776612-1776631 | Msa0970310:intron | 20.0% |
| !! | AAAAAAATTCTCAACAAGTA+AGG | - | chr6_4:1777005-1777024 | None:intergenic | 20.0% |
| !! | GAAACTATAGTCTATATATA+TGG | - | chr6_4:1778312-1778331 | None:intergenic | 20.0% |
| !! | AACATCTCTTAATTATTGTA+AGG | - | chr6_4:1778430-1778449 | None:intergenic | 20.0% |
| !! | ATGTTCTTTATCGTAATTTA+TGG | - | chr6_4:1778571-1778590 | None:intergenic | 20.0% |
| ! | ATGAAATTGAGAACATTGTT+TGG | + | chr6_4:1775834-1775853 | Msa0970310:CDS | 25.0% |
| !!! | CATTGTTTGGTTTTTTTGAT+TGG | + | chr6_4:1775847-1775866 | Msa0970310:CDS | 25.0% |
| ! | TTGTCTTGAAATACATTCAA+AGG | - | chr6_4:1775975-1775994 | None:intergenic | 25.0% |
| ! | AATGTATTTCAAGACAAAGA+TGG | + | chr6_4:1775978-1775997 | Msa0970310:CDS | 25.0% |
| ! | AGTGATCTTAATGGAAAAAT+TGG | + | chr6_4:1776063-1776082 | Msa0970310:intron | 25.0% |
| !!! | TTCAGAAATTTGTGTTACTT+TGG | + | chr6_4:1776405-1776424 | Msa0970310:intron | 25.0% |
| ! | GTTAGTCAAAATTATAAGGA+AGG | - | chr6_4:1776506-1776525 | None:intergenic | 25.0% |
| ! | GTCCAAATAATATTTGATGA+TGG | - | chr6_4:1776538-1776557 | None:intergenic | 25.0% |
| ! | TCATCAAATATTATTTGGAC+CGG | + | chr6_4:1776538-1776557 | Msa0970310:intron | 25.0% |
| ! | TAAAACTTAGACAATCATAC+CGG | - | chr6_4:1776560-1776579 | None:intergenic | 25.0% |
| !! | AAATTTGTCAGTGGTTTTTA+TGG | + | chr6_4:1776782-1776801 | Msa0970310:intron | 25.0% |
| !!! | GTAATTTTTTTCCCTAGAAT+CGG | - | chr6_4:1776818-1776837 | None:intergenic | 25.0% |
| ! | AAAAAATTACCCTAGTAATG+CGG | + | chr6_4:1776828-1776847 | Msa0970310:intron | 25.0% |
| ! | TTCATCATATACACAACATA+TGG | + | chr6_4:1776957-1776976 | Msa0970310:intron | 25.0% |
| ! | TAGTTGAATATCAACAAGTT+TGG | - | chr6_4:1777028-1777047 | None:intergenic | 25.0% |
| ! | GATTTGATATTAAAGTCAAC+AGG | + | chr6_4:1777172-1777191 | Msa0970310:CDS | 25.0% |
| ! | ACATCATGAAAGTAATTGAA+TGG | - | chr6_4:1777312-1777331 | None:intergenic | 25.0% |
| ! | AGTGAAAATGCAAAAGAAAA+TGG | - | chr6_4:1777467-1777486 | None:intergenic | 25.0% |
| !! | TTTTATCTGTATCAGATATC+AGG | + | chr6_4:1777495-1777514 | Msa0970310:CDS | 25.0% |
| ! | GTATATATGAAAGAATGTCA+TGG | - | chr6_4:1777753-1777772 | None:intergenic | 25.0% |
| !!! | CTATGATGGCAATTTTATTT+GGG | - | chr6_4:1777835-1777854 | None:intergenic | 25.0% |
| !! | TCTATGATGGCAATTTTATT+TGG | - | chr6_4:1777836-1777855 | None:intergenic | 25.0% |
| ! | AATTATTGTAAGGTGGAAAA+GGG | - | chr6_4:1778420-1778439 | None:intergenic | 25.0% |
| ! | TAATTATTGTAAGGTGGAAA+AGG | - | chr6_4:1778421-1778440 | None:intergenic | 25.0% |
| ! | ATCTCTTAATTATTGTAAGG+TGG | - | chr6_4:1778427-1778446 | None:intergenic | 25.0% |
| !!! | AATTCTCTGAAGATTTTCAT+TGG | - | chr6_4:1778514-1778533 | None:intergenic | 25.0% |
| ! | AAACATAAAGTGAGGATAAA+AGG | - | chr6_4:1778607-1778626 | None:intergenic | 25.0% |
| !! | TTTTATCCTCACTTTATGTT+TGG | + | chr6_4:1778606-1778625 | Msa0970310:three_prime_UTR | 25.0% |
| TTATGTTGATGTTGTTATGG+TGG | + | chr6_4:1775802-1775821 | Msa0970310:CDS | 30.0% | |
| !! | TGAGTAATTCAAGAGCATTA+AGG | + | chr6_4:1775913-1775932 | Msa0970310:CDS | 30.0% |
| !! | TTCAAAGGCATCTGTATAAT+TGG | - | chr6_4:1775960-1775979 | None:intergenic | 30.0% |
| !! | ATTGTATTGACTGATCCAAA+TGG | + | chr6_4:1776011-1776030 | Msa0970310:CDS | 30.0% |
| ! | TCTTTTGCTAGTGATCTTAA+TGG | + | chr6_4:1776054-1776073 | Msa0970310:intron | 30.0% |
| TTGTGTAGCTCAACATAAAT+AGG | + | chr6_4:1776343-1776362 | Msa0970310:intron | 30.0% | |
| !!! | CTTTTGAAACATATGGTTTC+AGG | + | chr6_4:1776619-1776638 | Msa0970310:intron | 30.0% |
| ! | TTGTTTCTTGGAAGAATCAA+AGG | + | chr6_4:1776663-1776682 | Msa0970310:CDS | 30.0% |
| AAAAACCACTGACAAATTTG+TGG | - | chr6_4:1776781-1776800 | None:intergenic | 30.0% | |
| ! | TAGGTATTTTTCTACTGAAC+AGG | + | chr6_4:1776869-1776888 | Msa0970310:intron | 30.0% |
| AAACAACATAAAGCAATCAG+AGG | + | chr6_4:1776900-1776919 | Msa0970310:CDS | 30.0% | |
| ACAGATGAATGATTGTCTAT+TGG | - | chr6_4:1777151-1777170 | None:intergenic | 30.0% | |
| AATAGACAATCATTCATCTG+TGG | + | chr6_4:1777150-1777169 | Msa0970310:CDS | 30.0% | |
| GGAAAAAAAGTGAAAATCAG+TGG | - | chr6_4:1777534-1777553 | None:intergenic | 30.0% | |
| ! | ATCATCATGCCTTAGTATTT+TGG | + | chr6_4:1777564-1777583 | Msa0970310:intron | 30.0% |
| ! | TAGCTCTCTAAACATTGTTT+TGG | + | chr6_4:1777774-1777793 | Msa0970310:intron | 30.0% |
| TTTCTTCTCATGATCTATGA+TGG | - | chr6_4:1777849-1777868 | None:intergenic | 30.0% | |
| ATGCAGGTTACTATTAGTTA+GGG | + | chr6_4:1777903-1777922 | Msa0970310:intron | 30.0% | |
| ATGGAATCCATGGAATAAAA+AGG | + | chr6_4:1778009-1778028 | Msa0970310:CDS | 30.0% | |
| TTTCAGTGAACTGTAATTGA+TGG | + | chr6_4:1778214-1778233 | Msa0970310:exon | 30.0% | |
| AGACTATAGTTTCTCTTCAT+AGG | + | chr6_4:1778319-1778338 | Msa0970310:three_prime_UTR | 30.0% | |
| GACTATAGTTTCTCTTCATA+GGG | + | chr6_4:1778320-1778339 | Msa0970310:three_prime_UTR | 30.0% | |
| ! | TTAAGAGATGTTTTGCTTCA+TGG | + | chr6_4:1778438-1778457 | Msa0970310:three_prime_UTR | 30.0% |
| ATATGTATACACAGCATTAC+TGG | - | chr6_4:1778541-1778560 | None:intergenic | 30.0% | |
| AAAACATGTTCATGATCACA+AGG | - | chr6_4:1778652-1778671 | None:intergenic | 30.0% | |
| GCTCTTGAATTACTCACAAA+TGG | - | chr6_4:1775909-1775928 | None:intergenic | 35.0% | |
| CATTCTATGCTTACTTGCTT+TGG | + | chr6_4:1776469-1776488 | Msa0970310:intron | 35.0% | |
| TTCTTGGAAGAATCAAAGGA+AGG | + | chr6_4:1776667-1776686 | Msa0970310:CDS | 35.0% | |
| !!! | ACTGCTTTTTATGAGCAGTA+AGG | + | chr6_4:1776694-1776713 | Msa0970310:CDS | 35.0% |
| !! | GTTTTAAACCTCCGATTCTA+GGG | + | chr6_4:1776804-1776823 | Msa0970310:intron | 35.0% |
| !!! | ATTTTTTTCCCTAGAATCGG+AGG | - | chr6_4:1776815-1776834 | None:intergenic | 35.0% |
| GACTATCGAGTTTGATCAAT+AGG | + | chr6_4:1776850-1776869 | Msa0970310:intron | 35.0% | |
| TTTCTACTGAACAGGCTAAA+TGG | + | chr6_4:1776877-1776896 | Msa0970310:intron | 35.0% | |
| CTCAACAAGTAAGGAGAAAA+CGG | - | chr6_4:1776996-1777015 | None:intergenic | 35.0% | |
| TACAATTCTGTGTTGCAGTT+TGG | + | chr6_4:1777046-1777065 | Msa0970310:intron | 35.0% | |
| GATGAATGATTGTCTATTGG+AGG | - | chr6_4:1777148-1777167 | None:intergenic | 35.0% | |
| CTTTATGTTGAAGATGTCTC+TGG | + | chr6_4:1777244-1777263 | Msa0970310:intron | 35.0% | |
| !!! | GTATATGCAGTTTTGAGTTG+AGG | + | chr6_4:1777375-1777394 | Msa0970310:intron | 35.0% |
| ! | TTATCAGTGTTTCTGACTCT+AGG | - | chr6_4:1777440-1777459 | None:intergenic | 35.0% |
| GCTGATGCAATTACATTTGA+TGG | + | chr6_4:1777709-1777728 | Msa0970310:CDS | 35.0% | |
| TGCAATTACATTTGATGGAG+AGG | + | chr6_4:1777714-1777733 | Msa0970310:CDS | 35.0% | |
| ATTACATTTGATGGAGAGGT+AGG | + | chr6_4:1777718-1777737 | Msa0970310:intron | 35.0% | |
| !!! | GTTTTGGTTTACCTTGTAGA+CGG | + | chr6_4:1777790-1777809 | Msa0970310:intron | 35.0% |
| AACTAATAGTAACCTGCATC+TGG | - | chr6_4:1777902-1777921 | None:intergenic | 35.0% | |
| GATGCAGGTTACTATTAGTT+AGG | + | chr6_4:1777902-1777921 | Msa0970310:intron | 35.0% | |
| !! | GCTTTAGCCTTTTTATTCCA+TGG | - | chr6_4:1778019-1778038 | None:intergenic | 35.0% |
| TAATCATCAACTCCCAAATC+AGG | - | chr6_4:1778046-1778065 | None:intergenic | 35.0% | |
| TCACATGGCTTCAAGATAAT+AGG | - | chr6_4:1778109-1778128 | None:intergenic | 35.0% | |
| TTGATCAATGTCATTCCGAT+AGG | + | chr6_4:1778375-1778394 | Msa0970310:three_prime_UTR | 35.0% | |
| ATGTTATCGTATCCACCTAT+CGG | - | chr6_4:1778393-1778412 | None:intergenic | 35.0% | |
| ! | GTTGATGTTGTTATGGTGGA+TGG | + | chr6_4:1775806-1775825 | Msa0970310:CDS | 40.0% |
| !! | TTTTGATTGGTTGCAGAACC+TGG | + | chr6_4:1775860-1775879 | Msa0970310:CDS | 40.0% |
| !! | AAGACAAAGATGGATTGCCA+AGG | + | chr6_4:1775988-1776007 | Msa0970310:CDS | 40.0% |
| GGATCAGTCAATACAATCCT+TGG | - | chr6_4:1776008-1776027 | None:intergenic | 40.0% | |
| ! | TAACACATCAAGAGCGTGTT+TGG | - | chr6_4:1776315-1776334 | None:intergenic | 40.0% |
| ! | TGGTTTCAGGTGCTTCTATA+TGG | + | chr6_4:1776632-1776651 | Msa0970310:intron | 40.0% |
| ! | TTTCAGGTGCTTCTATATGG+AGG | + | chr6_4:1776635-1776654 | Msa0970310:intron | 40.0% |
| TTCAGGTGCTTCTATATGGA+GGG | + | chr6_4:1776636-1776655 | Msa0970310:intron | 40.0% | |
| ! | ATGGAGGGCATATTGTTTCT+TGG | + | chr6_4:1776651-1776670 | Msa0970310:CDS | 40.0% |
| GACTTCCACAAATTTGTCAG+TGG | + | chr6_4:1776773-1776792 | Msa0970310:intron | 40.0% | |
| !!! | GGTTTTAAACCTCCGATTCT+AGG | + | chr6_4:1776803-1776822 | Msa0970310:intron | 40.0% |
| CAACATAAAGCAATCAGAGG+AGG | + | chr6_4:1776903-1776922 | Msa0970310:CDS | 40.0% | |
| CACATGGAATGACAAGAAAC+AGG | + | chr6_4:1777089-1777108 | Msa0970310:CDS | 40.0% | |
| GAATGACAAGAAACAGGATG+TGG | + | chr6_4:1777095-1777114 | Msa0970310:CDS | 40.0% | |
| AAGAAACAGGATGTGGTCAT+TGG | + | chr6_4:1777102-1777121 | Msa0970310:CDS | 40.0% | |
| TGATTGTCTATTGGAGGTAG+TGG | - | chr6_4:1777142-1777161 | None:intergenic | 40.0% | |
| ACATATGATGCATACCTTCG+TGG | - | chr6_4:1777214-1777233 | None:intergenic | 40.0% | |
| GTTGTGTCAGTTATACGTGT+CGG | - | chr6_4:1777273-1777292 | None:intergenic | 40.0% | |
| ACTTTCATGATGTGTGTCGT+CGG | + | chr6_4:1777319-1777338 | Msa0970310:intron | 40.0% | |
| CTTAGGATATCTCTAAGTGC+TGG | + | chr6_4:1777398-1777417 | Msa0970310:CDS | 40.0% | |
| GGCATGATGATCATGTAGAA+AGG | - | chr6_4:1777555-1777574 | None:intergenic | 40.0% | |
| CAGATCAAGATTCACAGAAC+AGG | + | chr6_4:1777687-1777706 | Msa0970310:CDS | 40.0% | |
| CATCTGGAAGTGAATTCTTC+TGG | - | chr6_4:1777886-1777905 | None:intergenic | 40.0% | |
| AAGAATTCACTTCCAGATGC+AGG | + | chr6_4:1777887-1777906 | Msa0970310:CDS | 40.0% | |
| ! | GTGATAAGAGTGCAGTTGTA+TGG | + | chr6_4:1777990-1778009 | Msa0970310:intron | 40.0% |
| GCTAAAGCTCTACCTGATTT+GGG | + | chr6_4:1778031-1778050 | Msa0970310:CDS | 40.0% | |
| TCTTGAAGCCATGTGAAGAA+TGG | + | chr6_4:1778113-1778132 | Msa0970310:CDS | 40.0% | |
| AAGCCATGTGAAGAATGGAA+GGG | + | chr6_4:1778118-1778137 | Msa0970310:CDS | 40.0% | |
| GTTTCATCAAGCTATTGCAG+TGG | + | chr6_4:1778160-1778179 | Msa0970310:CDS | 40.0% | |
| AAGCTATTGCAGTGGACAAT+TGG | + | chr6_4:1778168-1778187 | Msa0970310:CDS | 40.0% | |
| AAACCATAAAGAACTCGACG+AGG | - | chr6_4:1778196-1778215 | None:intergenic | 40.0% | |
| ATCAATGTCATTCCGATAGG+TGG | + | chr6_4:1778378-1778397 | Msa0970310:three_prime_UTR | 40.0% | |
| GCTAAGCAATTGTCATAGCA+TGG | - | chr6_4:1778466-1778485 | None:intergenic | 40.0% | |
| GGTTCTCCAAACATAAAGTG+AGG | - | chr6_4:1778615-1778634 | None:intergenic | 40.0% | |
| CACAAGGCTACAAAATTTGC+AGG | - | chr6_4:1778636-1778655 | None:intergenic | 40.0% | |
| ATTGGTTGCAGAACCTGGAT+TGG | + | chr6_4:1775865-1775884 | Msa0970310:CDS | 45.0% | |
| CTTTCACTCTTCTCCAATCC+AGG | - | chr6_4:1775881-1775900 | None:intergenic | 45.0% | |
| TCCAAATGGTTCATCAGCTG+AGG | + | chr6_4:1776025-1776044 | Msa0970310:CDS | 45.0% | |
| ACCTCAGCTGATGAACCATT+TGG | - | chr6_4:1776029-1776048 | None:intergenic | 45.0% | |
| AATGGTTCATCAGCTGAGGT+TGG | + | chr6_4:1776029-1776048 | Msa0970310:intron | 45.0% | |
| CTCGATAGTCCGCATTACTA+GGG | - | chr6_4:1776840-1776859 | None:intergenic | 45.0% | |
| ACTCGATAGTCCGCATTACT+AGG | - | chr6_4:1776841-1776860 | None:intergenic | 45.0% | |
| ! | GTATATCAGCTTGCTTCGCA+CGG | + | chr6_4:1776925-1776944 | Msa0970310:CDS | 45.0% |
| ! | TATATCAGCTTGCTTCGCAC+GGG | + | chr6_4:1776926-1776945 | Msa0970310:CDS | 45.0% |
| !! | GTGTTGCAGTTTGGTGATGT+TGG | + | chr6_4:1777055-1777074 | Msa0970310:intron | 45.0% |
| ! | GTTGGTTCACTTGAGACACA+TGG | + | chr6_4:1777073-1777092 | Msa0970310:CDS | 45.0% |
| ! | CTATTGGAGGTAGTGGTGAA+GGG | - | chr6_4:1777135-1777154 | None:intergenic | 45.0% |
| ! | TCTATTGGAGGTAGTGGTGA+AGG | - | chr6_4:1777136-1777155 | None:intergenic | 45.0% |
| TTGACTTAAAGACGCCACGA+AGG | + | chr6_4:1777197-1777216 | Msa0970310:CDS | 45.0% | |
| !!! | GCAGTTTTGAGTTGAGGCTT+AGG | + | chr6_4:1777381-1777400 | Msa0970310:intron | 45.0% |
| GTATACTCTGTCCGTCTACA+AGG | - | chr6_4:1777804-1777823 | None:intergenic | 45.0% | |
| GTGCAGTTGTATGGAATCCA+TGG | + | chr6_4:1777999-1778018 | Msa0970310:intron | 45.0% | |
| GGCTAAAGCTCTACCTGATT+TGG | + | chr6_4:1778030-1778049 | Msa0970310:CDS | 45.0% | |
| GAAGCCATGTGAAGAATGGA+AGG | + | chr6_4:1778117-1778136 | Msa0970310:CDS | 45.0% | |
| TAGCCCTTCCATTCTTCACA+TGG | - | chr6_4:1778124-1778143 | None:intergenic | 45.0% | |
| GATCCTCGTCGAGTTCTTTA+TGG | + | chr6_4:1778190-1778209 | Msa0970310:CDS | 45.0% | |
| ATTGCCTTGAGACAGCAATG+AGG | + | chr6_4:1778347-1778366 | Msa0970310:three_prime_UTR | 45.0% | |
| TGCAGTGAAGTGCGTATCGA+GGG | + | chr6_4:1777628-1777647 | Msa0970310:intron | 50.0% | |
| CACACCTCATTGCTGTCTCA+AGG | - | chr6_4:1778354-1778373 | None:intergenic | 50.0% | |
| GTGCAGTGAAGTGCGTATCG+AGG | + | chr6_4:1777627-1777646 | Msa0970310:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1775742 | 1778673 | 1775742 | ID=Msa0970310;Name=Msa0970310 |
| chr6_4 | mRNA | 1775742 | 1778673 | 1775742 | ID=Msa0970310-mRNA-1;Parent=Msa0970310;Name=Msa0970310-mRNA-1;_AED=0.15;_eAED=0.15;_QI=53|1|1|1|1|1|8|451|363 |
| chr6_4 | exon | 1775742 | 1776046 | 1775742 | ID=Msa0970310-mRNA-1:exon:846;Parent=Msa0970310-mRNA-1 |
| chr6_4 | exon | 1776641 | 1776715 | 1776641 | ID=Msa0970310-mRNA-1:exon:847;Parent=Msa0970310-mRNA-1 |
| chr6_4 | exon | 1776891 | 1776947 | 1776891 | ID=Msa0970310-mRNA-1:exon:848;Parent=Msa0970310-mRNA-1 |
| chr6_4 | exon | 1777064 | 1777218 | 1777064 | ID=Msa0970310-mRNA-1:exon:849;Parent=Msa0970310-mRNA-1 |
| chr6_4 | exon | 1777385 | 1777516 | 1777385 | ID=Msa0970310-mRNA-1:exon:850;Parent=Msa0970310-mRNA-1 |
| chr6_4 | exon | 1777633 | 1777735 | 1777633 | ID=Msa0970310-mRNA-1:exon:851;Parent=Msa0970310-mRNA-1 |
| chr6_4 | exon | 1777809 | 1777908 | 1777809 | ID=Msa0970310-mRNA-1:exon:852;Parent=Msa0970310-mRNA-1 |
| chr6_4 | exon | 1778005 | 1778673 | 1778005 | ID=Msa0970310-mRNA-1:exon:853;Parent=Msa0970310-mRNA-1 |
| chr6_4 | five_prime_UTR | 1775742 | 1775794 | 1775742 | ID=Msa0970310-mRNA-1:five_prime_utr;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1775795 | 1776046 | 1775795 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1776641 | 1776715 | 1776641 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1776891 | 1776947 | 1776891 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1777064 | 1777218 | 1777064 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1777385 | 1777516 | 1777385 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1777633 | 1777735 | 1777633 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1777809 | 1777908 | 1777809 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | CDS | 1778005 | 1778222 | 1778005 | ID=Msa0970310-mRNA-1:cds;Parent=Msa0970310-mRNA-1 |
| chr6_4 | three_prime_UTR | 1778223 | 1778673 | 1778223 | ID=Msa0970310-mRNA-1:three_prime_utr;Parent=Msa0970310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
