Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970440 | XP_039688002.1 | 93.318 | 434 | 29 | 0 | 1 | 434 | 1 | 434 | 0.0 | 837 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970440 | sp|Q5SVZ6|ZMYM1_HUMAN | 25.857 | 321 | 207 | 9 | 83 | 389 | 452 | 755 | 1.19e-27 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970440 | A0A0R0E2H8 | 82.110 | 436 | 75 | 2 | 1 | 434 | 1 | 435 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0343590 | Msa0970440 | 0.810119 | 1.350691e-50 | -8.615850e-47 |
| Msa0885100 | Msa0970440 | 0.805288 | 1.435346e-49 | -8.615850e-47 |
| Msa0970440 | Msa1087270 | 0.904514 | 1.134002e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970440 | MtrunA17_Chr3g0093231 | 83.486 | 436 | 70 | 1 | 1 | 434 | 1 | 436 | 0.0 | 747 |
| Msa0970440 | MtrunA17_Chr3g0119891 | 43.299 | 388 | 214 | 4 | 40 | 426 | 40 | 422 | 8.12e-99 | 312 |
| Msa0970440 | MtrunA17_Chr5g0408081 | 38.346 | 399 | 235 | 6 | 31 | 426 | 41 | 431 | 4.17e-93 | 297 |
| Msa0970440 | MtrunA17_Chr7g0214311 | 46.209 | 277 | 148 | 1 | 155 | 430 | 9 | 285 | 6.91e-80 | 249 |
| Msa0970440 | MtrunA17_Chr8g0388961 | 36.475 | 244 | 151 | 3 | 191 | 430 | 81 | 324 | 8.91e-37 | 142 |
| Msa0970440 | MtrunA17_Chr8g0388951 | 34.426 | 244 | 155 | 3 | 180 | 420 | 62 | 303 | 5.67e-36 | 140 |
| Msa0970440 | MtrunA17_Chr3g0144611 | 33.333 | 264 | 167 | 4 | 167 | 422 | 12 | 274 | 7.98e-35 | 132 |
| Msa0970440 | MtrunA17_Chr3g0078081 | 40.972 | 144 | 81 | 4 | 33 | 174 | 24 | 165 | 1.85e-29 | 113 |
| Msa0970440 | MtrunA17_Chr3g0093991 | 29.101 | 189 | 83 | 4 | 35 | 222 | 193 | 331 | 1.32e-15 | 77.8 |
| Msa0970440 | MtrunA17_Chr8g0350791 | 38.776 | 98 | 56 | 2 | 31 | 124 | 42 | 139 | 2.67e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970440 | AT1G19260.1 | 41.304 | 414 | 234 | 6 | 24 | 434 | 11 | 418 | 1.17e-107 | 335 |
| Msa0970440 | AT2G06541.2 | 44.379 | 338 | 184 | 4 | 85 | 420 | 2 | 337 | 3.03e-91 | 287 |
| Msa0970440 | AT2G06541.1 | 44.379 | 338 | 184 | 4 | 85 | 420 | 2 | 337 | 6.97e-91 | 287 |
| Msa0970440 | AT4G09660.1 | 35.507 | 414 | 202 | 8 | 24 | 434 | 11 | 362 | 1.95e-78 | 256 |
| Msa0970440 | AT3G29763.1 | 45.382 | 249 | 135 | 1 | 187 | 434 | 38 | 286 | 1.62e-72 | 236 |
| Msa0970440 | AT3G29450.1 | 37.710 | 297 | 128 | 4 | 125 | 420 | 48 | 288 | 5.69e-56 | 193 |
| Msa0970440 | AT3G29765.1 | 46.486 | 185 | 99 | 0 | 250 | 434 | 1 | 185 | 3.87e-51 | 181 |
| Msa0970440 | AT1G41920.1 | 40.426 | 235 | 137 | 2 | 199 | 430 | 5 | 239 | 2.27e-49 | 175 |
| Msa0970440 | AT4G10200.2 | 29.558 | 362 | 188 | 13 | 53 | 386 | 70 | 392 | 1.15e-28 | 119 |
| Msa0970440 | AT4G10200.1 | 29.558 | 362 | 188 | 13 | 53 | 386 | 70 | 392 | 1.15e-28 | 119 |
| Msa0970440 | AT1G42710.1 | 32.710 | 214 | 88 | 2 | 144 | 357 | 26 | 183 | 7.60e-27 | 107 |
| Msa0970440 | AT3G31402.1 | 30.531 | 226 | 91 | 4 | 127 | 352 | 12 | 171 | 1.69e-25 | 107 |
| Msa0970440 | AT3G29794.1 | 36.257 | 171 | 105 | 2 | 252 | 418 | 27 | 197 | 1.38e-23 | 102 |
| Msa0970440 | AT2G06500.1 | 27.165 | 254 | 170 | 6 | 130 | 373 | 81 | 329 | 7.62e-19 | 89.4 |
| Msa0970440 | AT1G35150.1 | 27.434 | 226 | 152 | 5 | 133 | 348 | 101 | 324 | 1.61e-14 | 75.9 |
| Msa0970440 | AT3G29638.1 | 35.000 | 120 | 66 | 4 | 299 | 416 | 154 | 263 | 4.26e-11 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAAAACTTGACAAATT+TGG | 0.204759 | 6_4:+1936337 | None:intergenic |
| AATATGAGAGGTGAATTTAA+TGG | 0.267777 | 6_4:-1935227 | Msa0970440:CDS |
| CCAATCTTTAAATCCGTCTT+TGG | 0.280934 | 6_4:+1936156 | None:intergenic |
| CTCACTTGGTCTTGAATATC+AGG | 0.303118 | 6_4:+1936391 | None:intergenic |
| CCAAAGACGGATTTAAAGAT+TGG | 0.323002 | 6_4:-1936156 | Msa0970440:CDS |
| CTTGACAAATTTGGTTGCAT+TGG | 0.334233 | 6_4:+1936346 | None:intergenic |
| CTCATTTGGATTAAATTCAT+TGG | 0.341888 | 6_4:+1936459 | None:intergenic |
| GGATCACGCACAATCTCATT+TGG | 0.382227 | 6_4:+1936445 | None:intergenic |
| CACCGCCATTTGCTCTTTGA+CGG | 0.398780 | 6_4:+1935673 | None:intergenic |
| GTTACAAGTTATCTATTTCA+AGG | 0.401126 | 6_4:-1935280 | Msa0970440:CDS |
| GGTTCTTCTACTTCGACTTC+CGG | 0.422132 | 6_4:+1936496 | None:intergenic |
| AATGAGATTGTGCGTGATCC+AGG | 0.422235 | 6_4:-1936442 | Msa0970440:CDS |
| CAATGGACATAGAAAGCATA+AGG | 0.425495 | 6_4:+1935176 | None:intergenic |
| AAAAGCTTGCAAGATCATAT+TGG | 0.432233 | 6_4:-1936121 | Msa0970440:CDS |
| ACGGATCTTATACAATTCTT+CGG | 0.435838 | 6_4:+1935997 | None:intergenic |
| CCCGCGAGGGCCGAGTACTT+TGG | 0.461819 | 6_4:-1936193 | Msa0970440:CDS |
| TTAAATTCATTGGCCACATT+AGG | 0.465850 | 6_4:+1936469 | None:intergenic |
| TTATGCTCACCGCTTGCAAT+TGG | 0.469976 | 6_4:-1935153 | Msa0970440:CDS |
| GCTCTTGTTTGACTCCCAAA+TGG | 0.475954 | 6_4:+1936310 | None:intergenic |
| TTCGATGTCTTCACCAAAGA+CGG | 0.484619 | 6_4:-1936169 | Msa0970440:CDS |
| GAGGAGGGCATATATCTTGA+AGG | 0.496344 | 6_4:-1936371 | Msa0970440:CDS |
| TAATGTGGATGTTGTGCAAC+CGG | 0.497329 | 6_4:-1936515 | Msa0970440:CDS |
| ACTTGATGTTGTTACAATCA+AGG | 0.497674 | 6_4:+1935073 | None:intergenic |
| GATTGAATACAGTGAGTTCA+AGG | 0.498483 | 6_4:-1936254 | Msa0970440:CDS |
| AGATATATGCCCTCCTCACT+TGG | 0.509334 | 6_4:+1936377 | None:intergenic |
| GACTTCCAGTGACATTCAAA+AGG | 0.524607 | 6_4:-1935795 | Msa0970440:CDS |
| TATATCCGTCAAAGAGCAAA+TGG | 0.527675 | 6_4:-1935678 | Msa0970440:CDS |
| ATACGAGGGCAAGGATATGA+TGG | 0.529594 | 6_4:-1935257 | Msa0970440:CDS |
| AGCAAATGGCGGTGATGTTG+AGG | 0.537038 | 6_4:-1935664 | Msa0970440:intron |
| CAAGTGCATCTTGCAAGAGA+AGG | 0.538655 | 6_4:-1935055 | Msa0970440:CDS |
| TGAATTTGTTTCCTACGACC+TGG | 0.542287 | 6_4:+1936424 | None:intergenic |
| GAATGACAAAGGGGAAGTTG+TGG | 0.543448 | 6_4:-1935381 | Msa0970440:CDS |
| AATGGACATAGAAAGCATAA+GGG | 0.549962 | 6_4:+1935177 | None:intergenic |
| CCAAAGTACTCGGCCCTCGC+GGG | 0.551249 | 6_4:+1936193 | None:intergenic |
| ACCAAAGTACTCGGCCCTCG+CGG | 0.558631 | 6_4:+1936192 | None:intergenic |
| AATCTACAGAACAAGTCAAA+CGG | 0.561983 | 6_4:+1935978 | None:intergenic |
| GGTTAATAGAACAAGTAATG+TGG | 0.563045 | 6_4:-1936530 | Msa0970440:CDS |
| AATTCATTGGCCACATTAGG+CGG | 0.563218 | 6_4:+1936472 | None:intergenic |
| AAGTGCATCTTGCAAGAGAA+GGG | 0.564696 | 6_4:-1935054 | Msa0970440:CDS |
| AATGTGATTATGAAAGAGCT+TGG | 0.570775 | 6_4:-1935740 | Msa0970440:CDS |
| CTGATATTCAAGACCAAGTG+AGG | 0.582545 | 6_4:-1936390 | Msa0970440:CDS |
| AGAAGAACCACCGCCTAATG+TGG | 0.590890 | 6_4:-1936482 | Msa0970440:CDS |
| CATGGTATGAGAAGTATGCA+TGG | 0.600857 | 6_4:-1936276 | Msa0970440:CDS |
| GACATCGAAACCAAAGTACT+CGG | 0.604501 | 6_4:+1936183 | None:intergenic |
| GCACAAGGCATTGCTTTCCG+TGG | 0.613012 | 6_4:-1935938 | Msa0970440:CDS |
| TCATTGGCCACATTAGGCGG+TGG | 0.616172 | 6_4:+1936475 | None:intergenic |
| TATTCAAGACCAAGTGAGGA+GGG | 0.618445 | 6_4:-1936386 | Msa0970440:CDS |
| TTGTGCGTGATCCAGGTCGT+AGG | 0.619322 | 6_4:-1936435 | Msa0970440:CDS |
| ATTTCAAGGATACGAGGGCA+AGG | 0.622770 | 6_4:-1935266 | Msa0970440:CDS |
| TGTAAAAGATACTACTTCTG+AGG | 0.626538 | 6_4:-1935336 | Msa0970440:CDS |
| ATATTCAAGACCAAGTGAGG+AGG | 0.627378 | 6_4:-1936387 | Msa0970440:CDS |
| AGGAGGGCATATATCTTGAA+GGG | 0.635940 | 6_4:-1936370 | Msa0970440:CDS |
| TATCTATTTCAAGGATACGA+GGG | 0.655354 | 6_4:-1935271 | Msa0970440:CDS |
| ACACAATCACCAATTGCAAG+CGG | 0.658038 | 6_4:+1935144 | None:intergenic |
| GATGGAGCTTCAAATATGAG+AGG | 0.659823 | 6_4:-1935239 | Msa0970440:CDS |
| AAAACTACTTCTCTAAACAA+GGG | 0.670078 | 6_4:-1935905 | Msa0970440:CDS |
| TTATCTATTTCAAGGATACG+AGG | 0.672699 | 6_4:-1935272 | Msa0970440:CDS |
| GCAAGCGGTGAGCATAACAA+TGG | 0.674516 | 6_4:+1935159 | None:intergenic |
| ACTAGATATCTCATAGCACA+AGG | 0.678649 | 6_4:-1935953 | Msa0970440:CDS |
| TGACTCCCAAATGGAGTACG+AGG | 0.701429 | 6_4:+1936319 | None:intergenic |
| TTCTCTTTAAGAAACCCGCG+AGG | 0.710825 | 6_4:-1936207 | Msa0970440:CDS |
| TCTCTTTAAGAAACCCGCGA+GGG | 0.712369 | 6_4:-1936206 | Msa0970440:CDS |
| ATCCGTCAAAGAGCAAATGG+CGG | 0.716513 | 6_4:-1935675 | Msa0970440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAATAGATAATATAAAT+TGG | + | chr6_4:1935929-1935948 | None:intergenic | 10.0% |
| !! | ATTAACACATTAAATTAAAA+AGG | + | chr6_4:1936107-1936126 | None:intergenic | 10.0% |
| !! | GAATAATAGATAATATAAAT+TGG | + | chr6_4:1935929-1935948 | None:intergenic | 10.0% |
| !! | ATTAACACATTAAATTAAAA+AGG | + | chr6_4:1936107-1936126 | None:intergenic | 10.0% |
| !! | TTAAATTAAAAAGGTGAATA+AGG | + | chr6_4:1936098-1936117 | None:intergenic | 15.0% |
| !! | TTAAATTAAAAAGGTGAATA+AGG | + | chr6_4:1936098-1936117 | None:intergenic | 15.0% |
| !! | ATATTATCTATTATTCTCCA+TGG | - | chr6_4:1935933-1935952 | Msa0970440:CDS | 20.0% |
| !!! | CATGGTTTTATGATTTAATA+AGG | + | chr6_4:1936010-1936029 | None:intergenic | 20.0% |
| !! | ATATTATCTATTATTCTCCA+TGG | - | chr6_4:1935933-1935952 | Msa0970440:CDS | 20.0% |
| !!! | CATGGTTTTATGATTTAATA+AGG | + | chr6_4:1936010-1936029 | None:intergenic | 20.0% |
| ! | CTCATTTGGATTAAATTCAT+TGG | + | chr6_4:1935095-1935114 | None:intergenic | 25.0% |
| ! | AAAAACTACTTCTCTAAACA+AGG | - | chr6_4:1935645-1935664 | Msa0970440:intron | 25.0% |
| ! | AAAACTACTTCTCTAAACAA+GGG | - | chr6_4:1935646-1935665 | Msa0970440:intron | 25.0% |
| ! | AAATATAATATGCCAAAGCA+GGG | + | chr6_4:1936140-1936159 | None:intergenic | 25.0% |
| ! | CTTTGGCATATTATATTTCT+AGG | - | chr6_4:1936142-1936161 | Msa0970440:CDS | 25.0% |
| ! | GTTACAAGTTATCTATTTCA+AGG | - | chr6_4:1936271-1936290 | Msa0970440:CDS | 25.0% |
| ! | AATATGAGAGGTGAATTTAA+TGG | - | chr6_4:1936324-1936343 | Msa0970440:CDS | 25.0% |
| ! | CTCATTTGGATTAAATTCAT+TGG | + | chr6_4:1935095-1935114 | None:intergenic | 25.0% |
| ! | AAAAACTACTTCTCTAAACA+AGG | - | chr6_4:1935645-1935664 | Msa0970440:intron | 25.0% |
| ! | AAAACTACTTCTCTAAACAA+GGG | - | chr6_4:1935646-1935665 | Msa0970440:intron | 25.0% |
| ! | AAATATAATATGCCAAAGCA+GGG | + | chr6_4:1936140-1936159 | None:intergenic | 25.0% |
| ! | CTTTGGCATATTATATTTCT+AGG | - | chr6_4:1936142-1936161 | Msa0970440:CDS | 25.0% |
| ! | GTTACAAGTTATCTATTTCA+AGG | - | chr6_4:1936271-1936290 | Msa0970440:CDS | 25.0% |
| ! | AATATGAGAGGTGAATTTAA+TGG | - | chr6_4:1936324-1936343 | Msa0970440:CDS | 25.0% |
| GGTTAATAGAACAAGTAATG+TGG | - | chr6_4:1935021-1935040 | Msa0970440:CDS | 30.0% | |
| TTAAATTCATTGGCCACATT+AGG | + | chr6_4:1935085-1935104 | None:intergenic | 30.0% | |
| AAAAGCTTGCAAGATCATAT+TGG | - | chr6_4:1935430-1935449 | Msa0970440:intron | 30.0% | |
| ! | TAATTTTGCTAGAGCAACTA+AGG | - | chr6_4:1935528-1935547 | Msa0970440:intron | 30.0% |
| ACGGATCTTATACAATTCTT+CGG | + | chr6_4:1935557-1935576 | None:intergenic | 30.0% | |
| AATCTACAGAACAAGTCAAA+CGG | + | chr6_4:1935576-1935595 | None:intergenic | 30.0% | |
| !!! | GAGAAGTAGTTTTTTCATCA+TGG | + | chr6_4:1935639-1935658 | None:intergenic | 30.0% |
| !! | ATTTTAGAGAGATGGTAGAT+TGG | - | chr6_4:1935671-1935690 | Msa0970440:CDS | 30.0% |
| !! | TTTTAGAGAGATGGTAGATT+GGG | - | chr6_4:1935672-1935691 | Msa0970440:CDS | 30.0% |
| AATGTGATTATGAAAGAGCT+TGG | - | chr6_4:1935811-1935830 | Msa0970440:CDS | 30.0% | |
| CTTGTTAATGAAACAGTGAA+TGG | + | chr6_4:1935971-1935990 | None:intergenic | 30.0% | |
| AACGTGAATAAAGTTCAACA+TGG | + | chr6_4:1936028-1936047 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGCTAATGAAACA+GGG | + | chr6_4:1936065-1936084 | None:intergenic | 30.0% |
| !! | TGTTTTTGTGCTAATGAAAC+AGG | + | chr6_4:1936066-1936085 | None:intergenic | 30.0% |
| GAAATATAATATGCCAAAGC+AGG | + | chr6_4:1936141-1936160 | None:intergenic | 30.0% | |
| ! | TCTAGGTTTTTGAATGACAA+AGG | - | chr6_4:1936159-1936178 | Msa0970440:CDS | 30.0% |
| ! | CTAGGTTTTTGAATGACAAA+GGG | - | chr6_4:1936160-1936179 | Msa0970440:CDS | 30.0% |
| ! | TAGGTTTTTGAATGACAAAG+GGG | - | chr6_4:1936161-1936180 | Msa0970440:CDS | 30.0% |
| TGTAAAAGATACTACTTCTG+AGG | - | chr6_4:1936215-1936234 | Msa0970440:CDS | 30.0% | |
| TTATCTATTTCAAGGATACG+AGG | - | chr6_4:1936279-1936298 | Msa0970440:CDS | 30.0% | |
| TATCTATTTCAAGGATACGA+GGG | - | chr6_4:1936280-1936299 | Msa0970440:CDS | 30.0% | |
| ! | AATGGACATAGAAAGCATAA+GGG | + | chr6_4:1936377-1936396 | None:intergenic | 30.0% |
| ACTTGATGTTGTTACAATCA+AGG | + | chr6_4:1936481-1936500 | None:intergenic | 30.0% | |
| GGTTAATAGAACAAGTAATG+TGG | - | chr6_4:1935021-1935040 | Msa0970440:CDS | 30.0% | |
| TTAAATTCATTGGCCACATT+AGG | + | chr6_4:1935085-1935104 | None:intergenic | 30.0% | |
| AAAAGCTTGCAAGATCATAT+TGG | - | chr6_4:1935430-1935449 | Msa0970440:intron | 30.0% | |
| ! | TAATTTTGCTAGAGCAACTA+AGG | - | chr6_4:1935528-1935547 | Msa0970440:intron | 30.0% |
| ACGGATCTTATACAATTCTT+CGG | + | chr6_4:1935557-1935576 | None:intergenic | 30.0% | |
| AATCTACAGAACAAGTCAAA+CGG | + | chr6_4:1935576-1935595 | None:intergenic | 30.0% | |
| !!! | GAGAAGTAGTTTTTTCATCA+TGG | + | chr6_4:1935639-1935658 | None:intergenic | 30.0% |
| !! | ATTTTAGAGAGATGGTAGAT+TGG | - | chr6_4:1935671-1935690 | Msa0970440:CDS | 30.0% |
| !! | TTTTAGAGAGATGGTAGATT+GGG | - | chr6_4:1935672-1935691 | Msa0970440:CDS | 30.0% |
| AATGTGATTATGAAAGAGCT+TGG | - | chr6_4:1935811-1935830 | Msa0970440:CDS | 30.0% | |
| CTTGTTAATGAAACAGTGAA+TGG | + | chr6_4:1935971-1935990 | None:intergenic | 30.0% | |
| AACGTGAATAAAGTTCAACA+TGG | + | chr6_4:1936028-1936047 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGCTAATGAAACA+GGG | + | chr6_4:1936065-1936084 | None:intergenic | 30.0% |
| !! | TGTTTTTGTGCTAATGAAAC+AGG | + | chr6_4:1936066-1936085 | None:intergenic | 30.0% |
| GAAATATAATATGCCAAAGC+AGG | + | chr6_4:1936141-1936160 | None:intergenic | 30.0% | |
| ! | TCTAGGTTTTTGAATGACAA+AGG | - | chr6_4:1936159-1936178 | Msa0970440:CDS | 30.0% |
| ! | CTAGGTTTTTGAATGACAAA+GGG | - | chr6_4:1936160-1936179 | Msa0970440:CDS | 30.0% |
| ! | TAGGTTTTTGAATGACAAAG+GGG | - | chr6_4:1936161-1936180 | Msa0970440:CDS | 30.0% |
| TGTAAAAGATACTACTTCTG+AGG | - | chr6_4:1936215-1936234 | Msa0970440:CDS | 30.0% | |
| TTATCTATTTCAAGGATACG+AGG | - | chr6_4:1936279-1936298 | Msa0970440:CDS | 30.0% | |
| TATCTATTTCAAGGATACGA+GGG | - | chr6_4:1936280-1936299 | Msa0970440:CDS | 30.0% | |
| ! | AATGGACATAGAAAGCATAA+GGG | + | chr6_4:1936377-1936396 | None:intergenic | 30.0% |
| ACTTGATGTTGTTACAATCA+AGG | + | chr6_4:1936481-1936500 | None:intergenic | 30.0% | |
| CTTGACAAATTTGGTTGCAT+TGG | + | chr6_4:1935208-1935227 | None:intergenic | 35.0% | |
| CGAGGAAAACTTGACAAATT+TGG | + | chr6_4:1935217-1935236 | None:intergenic | 35.0% | |
| !!! | CAAGAGCATTTTGTAGATCA+TGG | - | chr6_4:1935257-1935276 | Msa0970440:CDS | 35.0% |
| GATTGAATACAGTGAGTTCA+AGG | - | chr6_4:1935297-1935316 | Msa0970440:CDS | 35.0% | |
| CCAATCTTTAAATCCGTCTT+TGG | + | chr6_4:1935398-1935417 | None:intergenic | 35.0% | |
| ! | CCAAAGACGGATTTAAAGAT+TGG | - | chr6_4:1935395-1935414 | Msa0970440:intron | 35.0% |
| ACTAGATATCTCATAGCACA+AGG | - | chr6_4:1935598-1935617 | Msa0970440:intron | 35.0% | |
| !!! | TAGTTTTTTCATCATGGCCA+CGG | + | chr6_4:1935633-1935652 | None:intergenic | 35.0% |
| !! | CAAGGGTAATTTTAGAGAGA+TGG | - | chr6_4:1935663-1935682 | Msa0970440:intron | 35.0% |
| ! | TTTTGCAATTCTTTCCACCA+CGG | + | chr6_4:1935735-1935754 | None:intergenic | 35.0% |
| ! | AAGTTCCTTTTGAATGTCAC+TGG | + | chr6_4:1935764-1935783 | None:intergenic | 35.0% |
| TATATCCGTCAAAGAGCAAA+TGG | - | chr6_4:1935873-1935892 | Msa0970440:CDS | 35.0% | |
| ! | ATTTTGTGATTTCCCTGCTT+TGG | - | chr6_4:1936125-1936144 | Msa0970440:CDS | 35.0% |
| ! | CAATGGACATAGAAAGCATA+AGG | + | chr6_4:1936378-1936397 | None:intergenic | 35.0% |
| CTTGACAAATTTGGTTGCAT+TGG | + | chr6_4:1935208-1935227 | None:intergenic | 35.0% | |
| CGAGGAAAACTTGACAAATT+TGG | + | chr6_4:1935217-1935236 | None:intergenic | 35.0% | |
| !!! | CAAGAGCATTTTGTAGATCA+TGG | - | chr6_4:1935257-1935276 | Msa0970440:CDS | 35.0% |
| GATTGAATACAGTGAGTTCA+AGG | - | chr6_4:1935297-1935316 | Msa0970440:CDS | 35.0% | |
| CCAATCTTTAAATCCGTCTT+TGG | + | chr6_4:1935398-1935417 | None:intergenic | 35.0% | |
| ! | CCAAAGACGGATTTAAAGAT+TGG | - | chr6_4:1935395-1935414 | Msa0970440:intron | 35.0% |
| ACTAGATATCTCATAGCACA+AGG | - | chr6_4:1935598-1935617 | Msa0970440:intron | 35.0% | |
| !!! | TAGTTTTTTCATCATGGCCA+CGG | + | chr6_4:1935633-1935652 | None:intergenic | 35.0% |
| !! | CAAGGGTAATTTTAGAGAGA+TGG | - | chr6_4:1935663-1935682 | Msa0970440:intron | 35.0% |
| ! | TTTTGCAATTCTTTCCACCA+CGG | + | chr6_4:1935735-1935754 | None:intergenic | 35.0% |
| ! | AAGTTCCTTTTGAATGTCAC+TGG | + | chr6_4:1935764-1935783 | None:intergenic | 35.0% |
| TATATCCGTCAAAGAGCAAA+TGG | - | chr6_4:1935873-1935892 | Msa0970440:CDS | 35.0% | |
| ! | ATTTTGTGATTTCCCTGCTT+TGG | - | chr6_4:1936125-1936144 | Msa0970440:CDS | 35.0% |
| ! | CAATGGACATAGAAAGCATA+AGG | + | chr6_4:1936378-1936397 | None:intergenic | 35.0% |
| TAATGTGGATGTTGTGCAAC+CGG | - | chr6_4:1935036-1935055 | Msa0970440:CDS | 40.0% | |
| AATTCATTGGCCACATTAGG+CGG | + | chr6_4:1935082-1935101 | None:intergenic | 40.0% | |
| ! | TGAATTTGTTTCCTACGACC+TGG | + | chr6_4:1935130-1935149 | None:intergenic | 40.0% |
| !! | CTCACTTGGTCTTGAATATC+AGG | + | chr6_4:1935163-1935182 | None:intergenic | 40.0% |
| CTGATATTCAAGACCAAGTG+AGG | - | chr6_4:1935161-1935180 | Msa0970440:CDS | 40.0% | |
| ATATTCAAGACCAAGTGAGG+AGG | - | chr6_4:1935164-1935183 | Msa0970440:CDS | 40.0% | |
| TATTCAAGACCAAGTGAGGA+GGG | - | chr6_4:1935165-1935184 | Msa0970440:CDS | 40.0% | |
| ! | AGGAGGGCATATATCTTGAA+GGG | - | chr6_4:1935181-1935200 | Msa0970440:CDS | 40.0% |
| ! | AGTTTTCCTCGTACTCCATT+TGG | - | chr6_4:1935226-1935245 | Msa0970440:CDS | 40.0% |
| ! | GTTTTCCTCGTACTCCATTT+GGG | - | chr6_4:1935227-1935246 | Msa0970440:CDS | 40.0% |
| ! | CATGGTATGAGAAGTATGCA+TGG | - | chr6_4:1935275-1935294 | Msa0970440:CDS | 40.0% |
| ! | GACATCGAAACCAAAGTACT+CGG | + | chr6_4:1935371-1935390 | None:intergenic | 40.0% |
| TTCGATGTCTTCACCAAAGA+CGG | - | chr6_4:1935382-1935401 | Msa0970440:CDS | 40.0% | |
| GACTTCCAGTGACATTCAAA+AGG | - | chr6_4:1935756-1935775 | Msa0970440:CDS | 40.0% | |
| AATGGTGTGTCAATAAGCCA+TGG | + | chr6_4:1935953-1935972 | None:intergenic | 40.0% | |
| TGCTAATGAAACAGGGAATG+AGG | + | chr6_4:1936058-1936077 | None:intergenic | 40.0% | |
| GATGGAGCTTCAAATATGAG+AGG | - | chr6_4:1936312-1936331 | Msa0970440:CDS | 40.0% | |
| ACACAATCACCAATTGCAAG+CGG | + | chr6_4:1936410-1936429 | None:intergenic | 40.0% | |
| AAGTGCATCTTGCAAGAGAA+GGG | - | chr6_4:1936497-1936516 | Msa0970440:CDS | 40.0% | |
| TAATGTGGATGTTGTGCAAC+CGG | - | chr6_4:1935036-1935055 | Msa0970440:CDS | 40.0% | |
| AATTCATTGGCCACATTAGG+CGG | + | chr6_4:1935082-1935101 | None:intergenic | 40.0% | |
| ! | TGAATTTGTTTCCTACGACC+TGG | + | chr6_4:1935130-1935149 | None:intergenic | 40.0% |
| !! | CTCACTTGGTCTTGAATATC+AGG | + | chr6_4:1935163-1935182 | None:intergenic | 40.0% |
| CTGATATTCAAGACCAAGTG+AGG | - | chr6_4:1935161-1935180 | Msa0970440:CDS | 40.0% | |
| ATATTCAAGACCAAGTGAGG+AGG | - | chr6_4:1935164-1935183 | Msa0970440:CDS | 40.0% | |
| TATTCAAGACCAAGTGAGGA+GGG | - | chr6_4:1935165-1935184 | Msa0970440:CDS | 40.0% | |
| ! | AGGAGGGCATATATCTTGAA+GGG | - | chr6_4:1935181-1935200 | Msa0970440:CDS | 40.0% |
| ! | AGTTTTCCTCGTACTCCATT+TGG | - | chr6_4:1935226-1935245 | Msa0970440:CDS | 40.0% |
| ! | GTTTTCCTCGTACTCCATTT+GGG | - | chr6_4:1935227-1935246 | Msa0970440:CDS | 40.0% |
| ! | CATGGTATGAGAAGTATGCA+TGG | - | chr6_4:1935275-1935294 | Msa0970440:CDS | 40.0% |
| ! | GACATCGAAACCAAAGTACT+CGG | + | chr6_4:1935371-1935390 | None:intergenic | 40.0% |
| TTCGATGTCTTCACCAAAGA+CGG | - | chr6_4:1935382-1935401 | Msa0970440:CDS | 40.0% | |
| GACTTCCAGTGACATTCAAA+AGG | - | chr6_4:1935756-1935775 | Msa0970440:CDS | 40.0% | |
| AATGGTGTGTCAATAAGCCA+TGG | + | chr6_4:1935953-1935972 | None:intergenic | 40.0% | |
| TGCTAATGAAACAGGGAATG+AGG | + | chr6_4:1936058-1936077 | None:intergenic | 40.0% | |
| GATGGAGCTTCAAATATGAG+AGG | - | chr6_4:1936312-1936331 | Msa0970440:CDS | 40.0% | |
| ACACAATCACCAATTGCAAG+CGG | + | chr6_4:1936410-1936429 | None:intergenic | 40.0% | |
| AAGTGCATCTTGCAAGAGAA+GGG | - | chr6_4:1936497-1936516 | Msa0970440:CDS | 40.0% | |
| GGTTCTTCTACTTCGACTTC+CGG | + | chr6_4:1935058-1935077 | None:intergenic | 45.0% | |
| GGATCACGCACAATCTCATT+TGG | + | chr6_4:1935109-1935128 | None:intergenic | 45.0% | |
| AATGAGATTGTGCGTGATCC+AGG | - | chr6_4:1935109-1935128 | Msa0970440:CDS | 45.0% | |
| AGATATATGCCCTCCTCACT+TGG | + | chr6_4:1935177-1935196 | None:intergenic | 45.0% | |
| ! | GAGGAGGGCATATATCTTGA+AGG | - | chr6_4:1935180-1935199 | Msa0970440:CDS | 45.0% |
| ! | GCTCTTGTTTGACTCCCAAA+TGG | + | chr6_4:1935244-1935263 | None:intergenic | 45.0% |
| ! | TTCTCTTTAAGAAACCCGCG+AGG | - | chr6_4:1935344-1935363 | Msa0970440:CDS | 45.0% |
| ! | TCTCTTTAAGAAACCCGCGA+GGG | - | chr6_4:1935345-1935364 | Msa0970440:CDS | 45.0% |
| ATCCGTCAAAGAGCAAATGG+CGG | - | chr6_4:1935876-1935895 | Msa0970440:CDS | 45.0% | |
| GAATGACAAAGGGGAAGTTG+TGG | - | chr6_4:1936170-1936189 | Msa0970440:CDS | 45.0% | |
| ATTTCAAGGATACGAGGGCA+AGG | - | chr6_4:1936285-1936304 | Msa0970440:CDS | 45.0% | |
| ATACGAGGGCAAGGATATGA+TGG | - | chr6_4:1936294-1936313 | Msa0970440:CDS | 45.0% | |
| TTATGCTCACCGCTTGCAAT+TGG | - | chr6_4:1936398-1936417 | Msa0970440:CDS | 45.0% | |
| CAAGTGCATCTTGCAAGAGA+AGG | - | chr6_4:1936496-1936515 | Msa0970440:CDS | 45.0% | |
| GGTTCTTCTACTTCGACTTC+CGG | + | chr6_4:1935058-1935077 | None:intergenic | 45.0% | |
| GGATCACGCACAATCTCATT+TGG | + | chr6_4:1935109-1935128 | None:intergenic | 45.0% | |
| AATGAGATTGTGCGTGATCC+AGG | - | chr6_4:1935109-1935128 | Msa0970440:CDS | 45.0% | |
| AGATATATGCCCTCCTCACT+TGG | + | chr6_4:1935177-1935196 | None:intergenic | 45.0% | |
| ! | GAGGAGGGCATATATCTTGA+AGG | - | chr6_4:1935180-1935199 | Msa0970440:CDS | 45.0% |
| ! | GCTCTTGTTTGACTCCCAAA+TGG | + | chr6_4:1935244-1935263 | None:intergenic | 45.0% |
| ! | TTCTCTTTAAGAAACCCGCG+AGG | - | chr6_4:1935344-1935363 | Msa0970440:CDS | 45.0% |
| ! | TCTCTTTAAGAAACCCGCGA+GGG | - | chr6_4:1935345-1935364 | Msa0970440:CDS | 45.0% |
| ATCCGTCAAAGAGCAAATGG+CGG | - | chr6_4:1935876-1935895 | Msa0970440:CDS | 45.0% | |
| GAATGACAAAGGGGAAGTTG+TGG | - | chr6_4:1936170-1936189 | Msa0970440:CDS | 45.0% | |
| ATTTCAAGGATACGAGGGCA+AGG | - | chr6_4:1936285-1936304 | Msa0970440:CDS | 45.0% | |
| ATACGAGGGCAAGGATATGA+TGG | - | chr6_4:1936294-1936313 | Msa0970440:CDS | 45.0% | |
| TTATGCTCACCGCTTGCAAT+TGG | - | chr6_4:1936398-1936417 | Msa0970440:CDS | 45.0% | |
| CAAGTGCATCTTGCAAGAGA+AGG | - | chr6_4:1936496-1936515 | Msa0970440:CDS | 45.0% | |
| AGAAGAACCACCGCCTAATG+TGG | - | chr6_4:1935069-1935088 | Msa0970440:CDS | 50.0% | |
| TGACTCCCAAATGGAGTACG+AGG | + | chr6_4:1935235-1935254 | None:intergenic | 50.0% | |
| ! | GTGAGAGATGCTTTTGACCG+TGG | - | chr6_4:1935715-1935734 | Msa0970440:CDS | 50.0% |
| ! | AGAGATGCTTTTGACCGTGG+TGG | - | chr6_4:1935718-1935737 | Msa0970440:CDS | 50.0% |
| CACCGCCATTTGCTCTTTGA+CGG | + | chr6_4:1935881-1935900 | None:intergenic | 50.0% | |
| AGCAAATGGCGGTGATGTTG+AGG | - | chr6_4:1935887-1935906 | Msa0970440:CDS | 50.0% | |
| GCAAGCGGTGAGCATAACAA+TGG | + | chr6_4:1936395-1936414 | None:intergenic | 50.0% | |
| AGAAGAACCACCGCCTAATG+TGG | - | chr6_4:1935069-1935088 | Msa0970440:CDS | 50.0% | |
| TGACTCCCAAATGGAGTACG+AGG | + | chr6_4:1935235-1935254 | None:intergenic | 50.0% | |
| ! | GTGAGAGATGCTTTTGACCG+TGG | - | chr6_4:1935715-1935734 | Msa0970440:CDS | 50.0% |
| ! | AGAGATGCTTTTGACCGTGG+TGG | - | chr6_4:1935718-1935737 | Msa0970440:CDS | 50.0% |
| CACCGCCATTTGCTCTTTGA+CGG | + | chr6_4:1935881-1935900 | None:intergenic | 50.0% | |
| AGCAAATGGCGGTGATGTTG+AGG | - | chr6_4:1935887-1935906 | Msa0970440:CDS | 50.0% | |
| GCAAGCGGTGAGCATAACAA+TGG | + | chr6_4:1936395-1936414 | None:intergenic | 50.0% | |
| TCATTGGCCACATTAGGCGG+TGG | + | chr6_4:1935079-1935098 | None:intergenic | 55.0% | |
| TTGTGCGTGATCCAGGTCGT+AGG | - | chr6_4:1935116-1935135 | Msa0970440:CDS | 55.0% | |
| !! | GCACAAGGCATTGCTTTCCG+TGG | - | chr6_4:1935613-1935632 | Msa0970440:intron | 55.0% |
| TCATTGGCCACATTAGGCGG+TGG | + | chr6_4:1935079-1935098 | None:intergenic | 55.0% | |
| TTGTGCGTGATCCAGGTCGT+AGG | - | chr6_4:1935116-1935135 | Msa0970440:CDS | 55.0% | |
| !! | GCACAAGGCATTGCTTTCCG+TGG | - | chr6_4:1935613-1935632 | Msa0970440:intron | 55.0% |
| ! | ACCAAAGTACTCGGCCCTCG+CGG | + | chr6_4:1935362-1935381 | None:intergenic | 60.0% |
| ! | ACCAAAGTACTCGGCCCTCG+CGG | + | chr6_4:1935362-1935381 | None:intergenic | 60.0% |
| ! | CCAAAGTACTCGGCCCTCGC+GGG | + | chr6_4:1935361-1935380 | None:intergenic | 65.0% |
| ! | CCAAAGTACTCGGCCCTCGC+GGG | + | chr6_4:1935361-1935380 | None:intergenic | 65.0% |
| CCCGCGAGGGCCGAGTACTT+TGG | - | chr6_4:1935358-1935377 | Msa0970440:CDS | 70.0% | |
| CCCGCGAGGGCCGAGTACTT+TGG | - | chr6_4:1935358-1935377 | Msa0970440:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1935007 | 1936566 | 1935007 | ID=Msa0970440;Name=Msa0970440 |
| chr6_4 | mRNA | 1935007 | 1936566 | 1935007 | ID=Msa0970440-mRNA-1;Parent=Msa0970440;Name=Msa0970440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0|1|1|1|2|0|434 |
| chr6_4 | exon | 1935665 | 1936566 | 1935665 | ID=Msa0970440-mRNA-1:exon:947;Parent=Msa0970440-mRNA-1 |
| chr6_4 | exon | 1935007 | 1935409 | 1935007 | ID=Msa0970440-mRNA-1:exon:946;Parent=Msa0970440-mRNA-1 |
| chr6_4 | CDS | 1935665 | 1936566 | 1935665 | ID=Msa0970440-mRNA-1:cds;Parent=Msa0970440-mRNA-1 |
| chr6_4 | CDS | 1935007 | 1935409 | 1935007 | ID=Msa0970440-mRNA-1:cds;Parent=Msa0970440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
