Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087270 | XP_024639666.1 | 88.101 | 790 | 89 | 2 | 1 | 788 | 1 | 787 | 0.0 | 1427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087270 | sp|Q5SVZ6|ZMYM1_HUMAN | 23.066 | 724 | 462 | 23 | 83 | 764 | 452 | 1122 | 3.78e-41 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087270 | A0A0R0FVB2 | 84.557 | 790 | 119 | 2 | 1 | 788 | 1 | 789 | 0.0 | 1397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0970440 | Msa1087270 | 0.904514 | 1.134002e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087270 | MtrunA17_Chr3g0093231 | 86.427 | 641 | 85 | 1 | 1 | 639 | 1 | 641 | 0.0 | 1144 |
| Msa1087270 | MtrunA17_Chr5g0408081 | 37.831 | 756 | 454 | 8 | 31 | 778 | 41 | 788 | 0.0 | 561 |
| Msa1087270 | MtrunA17_Chr3g0119891 | 41.502 | 759 | 414 | 8 | 40 | 783 | 40 | 783 | 0.0 | 550 |
| Msa1087270 | MtrunA17_Chr8g0388951 | 32.598 | 589 | 387 | 6 | 188 | 770 | 72 | 656 | 3.50e-96 | 315 |
| Msa1087270 | MtrunA17_Chr8g0388961 | 33.003 | 606 | 388 | 8 | 191 | 786 | 81 | 678 | 4.20e-93 | 306 |
| Msa1087270 | MtrunA17_Chr7g0214311 | 45.364 | 302 | 164 | 1 | 155 | 455 | 9 | 310 | 4.27e-82 | 265 |
| Msa1087270 | MtrunA17_Chr3g0144611 | 29.570 | 372 | 229 | 8 | 167 | 526 | 12 | 362 | 2.10e-35 | 138 |
| Msa1087270 | MtrunA17_Chr3g0078081 | 41.259 | 143 | 80 | 4 | 33 | 173 | 24 | 164 | 1.84e-30 | 118 |
| Msa1087270 | MtrunA17_Chr1g0174881 | 52.273 | 88 | 42 | 0 | 696 | 783 | 1 | 88 | 3.45e-26 | 102 |
| Msa1087270 | MtrunA17_Chr8g0350791 | 38.776 | 98 | 56 | 2 | 31 | 124 | 42 | 139 | 5.09e-15 | 72.8 |
| Msa1087270 | MtrunA17_Chr3g0093991 | 30.159 | 189 | 81 | 5 | 35 | 222 | 193 | 331 | 7.57e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087270 | AT1G19260.1 | 41.253 | 766 | 437 | 8 | 24 | 783 | 11 | 769 | 0.0 | 614 |
| Msa1087270 | AT4G09660.1 | 38.322 | 715 | 372 | 10 | 24 | 732 | 11 | 662 | 3.75e-165 | 493 |
| Msa1087270 | AT3G29765.1 | 42.831 | 537 | 303 | 2 | 250 | 783 | 1 | 536 | 3.13e-153 | 458 |
| Msa1087270 | AT3G29763.1 | 43.070 | 469 | 262 | 3 | 187 | 651 | 38 | 505 | 5.90e-133 | 405 |
| Msa1087270 | AT2G06541.1 | 34.290 | 697 | 346 | 11 | 85 | 779 | 2 | 588 | 1.53e-126 | 391 |
| Msa1087270 | AT1G41920.1 | 40.162 | 493 | 288 | 4 | 199 | 685 | 5 | 496 | 2.73e-111 | 348 |
| Msa1087270 | AT3G29450.1 | 39.264 | 489 | 236 | 6 | 125 | 609 | 48 | 479 | 4.04e-101 | 322 |
| Msa1087270 | AT2G06541.2 | 44.675 | 338 | 183 | 4 | 85 | 420 | 2 | 337 | 3.74e-88 | 290 |
| Msa1087270 | AT2G06541.2 | 31.102 | 254 | 126 | 3 | 526 | 779 | 356 | 560 | 9.37e-31 | 128 |
| Msa1087270 | AT3G31402.1 | 28.775 | 351 | 126 | 6 | 127 | 477 | 12 | 238 | 2.60e-36 | 142 |
| Msa1087270 | AT3G31402.1 | 35.196 | 179 | 107 | 4 | 576 | 752 | 206 | 377 | 5.82e-22 | 99.4 |
| Msa1087270 | AT3G29794.1 | 26.410 | 390 | 247 | 6 | 252 | 621 | 27 | 396 | 1.33e-30 | 125 |
| Msa1087270 | AT4G10200.2 | 28.409 | 352 | 205 | 11 | 53 | 386 | 70 | 392 | 3.14e-27 | 118 |
| Msa1087270 | AT4G10200.1 | 28.409 | 352 | 205 | 11 | 53 | 386 | 70 | 392 | 3.14e-27 | 118 |
| Msa1087270 | AT1G42710.1 | 33.178 | 214 | 87 | 2 | 144 | 357 | 26 | 183 | 9.64e-27 | 108 |
| Msa1087270 | AT3G31402.2 | 37.267 | 161 | 93 | 3 | 576 | 734 | 124 | 278 | 9.00e-23 | 100 |
| Msa1087270 | AT3G31402.2 | 50.769 | 65 | 32 | 0 | 413 | 477 | 92 | 156 | 4.09e-12 | 68.6 |
| Msa1087270 | AT2G06500.1 | 27.155 | 232 | 157 | 5 | 130 | 351 | 81 | 310 | 3.74e-17 | 86.3 |
| Msa1087270 | AT1G35150.1 | 27.876 | 226 | 151 | 5 | 133 | 348 | 101 | 324 | 4.13e-14 | 75.9 |
Find 132 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATTTCTTCATCCATATT+TGG | 0.190680 | 7_2:-88005281 | None:intergenic |
| CGAGGAAAACTTGACAAATT+TGG | 0.204759 | 7_2:-88003514 | None:intergenic |
| AATATGAGAGGTGAATTTAA+TGG | 0.267777 | 7_2:+88004624 | Msa1087270:CDS |
| CCAATCTTTAAATCCGTCTT+TGG | 0.280934 | 7_2:-88003695 | None:intergenic |
| AGGTATTCCGGTGCCAAATA+TGG | 0.291678 | 7_2:+88005268 | Msa1087270:CDS |
| CTCACTTGGTCTTGAATATC+AGG | 0.303118 | 7_2:-88003460 | None:intergenic |
| CCAAAGACGGATTTAAAGAT+TGG | 0.323002 | 7_2:+88003695 | Msa1087270:CDS |
| CAATGTGGCCAACCGATCTT+TGG | 0.326123 | 7_2:-88005189 | None:intergenic |
| CGTGTTAGTGGTGCTTAGTA+TGG | 0.331445 | 7_2:+88004986 | Msa1087270:CDS |
| CTTGACAAATTTGGTTGCAT+TGG | 0.334233 | 7_2:-88003505 | None:intergenic |
| AAACTTGGAGAAAGAGTTCT+TGG | 0.337257 | 7_2:-88005465 | None:intergenic |
| GGATGAAGAAATACCGGTTC+GGG | 0.341683 | 7_2:+88005289 | Msa1087270:CDS |
| CTCATTTGGATTAAATTCAT+TGG | 0.341888 | 7_2:-88003392 | None:intergenic |
| TTGTGAAGATGTTCAAAGTT+TGG | 0.347209 | 7_2:+88005616 | Msa1087270:CDS |
| TGAGTTAGCTTTGATATTGC+CGG | 0.365115 | 7_2:+88005697 | Msa1087270:CDS |
| TTGTGTTGCTAAAGGTATTC+CGG | 0.366691 | 7_2:+88005256 | Msa1087270:CDS |
| CGGGGTCGTTCAAGACTAGA+AGG | 0.380724 | 7_2:+88005308 | Msa1087270:CDS |
| GGATCACGCACAATCTCATT+TGG | 0.382227 | 7_2:-88003406 | None:intergenic |
| TCATACTACGTTGCTCCGTT+TGG | 0.390036 | 7_2:+88004947 | Msa1087270:CDS |
| CACCGCCATTTGCTCTTTGA+CGG | 0.398780 | 7_2:-88004178 | None:intergenic |
| GTTACAAGTTATCTATTTCA+AGG | 0.401126 | 7_2:+88004571 | Msa1087270:CDS |
| ATGATGACCGTGGAACAATA+AGG | 0.407561 | 7_2:+88005540 | Msa1087270:CDS |
| GGTTCTTCTACTTCGACTTC+CGG | 0.422132 | 7_2:-88003355 | None:intergenic |
| AATGAGATTGTGCGTGATCC+AGG | 0.422235 | 7_2:+88003409 | Msa1087270:CDS |
| AAGTTAATGTTAAAGTTGTT+TGG | 0.424115 | 7_2:+88005089 | Msa1087270:CDS |
| CAATGGACATAGAAAGCATA+AGG | 0.425495 | 7_2:-88004675 | None:intergenic |
| AACATCTTCACAAGAAGAAA+AGG | 0.429994 | 7_2:-88005606 | None:intergenic |
| AAAAGCTTGCAAGATCATAT+TGG | 0.432233 | 7_2:+88003730 | Msa1087270:CDS |
| ACGGATCTTATACAATTCTT+CGG | 0.435838 | 7_2:-88003854 | None:intergenic |
| CTAGACCCGGAGATACTAGA+TGG | 0.436174 | 7_2:+88004916 | Msa1087270:CDS |
| CTCGAAAGAGGTCGCGGAAA+GGG | 0.444751 | 7_2:+88005882 | Msa1087270:CDS |
| GGCAACATTAATTAAATCCA+TGG | 0.445521 | 7_2:-88005168 | None:intergenic |
| GGTTCAAACTGAGAAACATT+TGG | 0.450590 | 7_2:+88005649 | Msa1087270:CDS |
| TTCGAACATTCACTCGAAAG+AGG | 0.454191 | 7_2:+88005870 | Msa1087270:CDS |
| GAAACATTTGGTATTTCCAT+TGG | 0.457634 | 7_2:+88005661 | Msa1087270:CDS |
| TGAACCCCATCTAGTATCTC+CGG | 0.458437 | 7_2:-88004922 | None:intergenic |
| CCCGCGAGGGCCGAGTACTT+TGG | 0.461819 | 7_2:+88003658 | Msa1087270:CDS |
| AGTCTTGAACGACCCCGAAC+CGG | 0.461962 | 7_2:-88005302 | None:intergenic |
| TCAAAGTTTGGCTATGAAGA+TGG | 0.464656 | 7_2:+88005628 | Msa1087270:CDS |
| TTAAATTCATTGGCCACATT+AGG | 0.465850 | 7_2:-88003382 | None:intergenic |
| CTTAGTATGGTTCATAAAGA+TGG | 0.468952 | 7_2:+88004999 | Msa1087270:CDS |
| CTTATGTACTTCAAGTGAAA+AGG | 0.469447 | 7_2:+88005576 | Msa1087270:CDS |
| TTATGCTCACCGCTTGCAAT+TGG | 0.469976 | 7_2:+88004698 | Msa1087270:CDS |
| GCTCTTGTTTGACTCCCAAA+TGG | 0.475954 | 7_2:-88003541 | None:intergenic |
| TGGATGAAGAAATACCGGTT+CGG | 0.481691 | 7_2:+88005288 | Msa1087270:CDS |
| TTCGATGTCTTCACCAAAGA+CGG | 0.484619 | 7_2:+88003682 | Msa1087270:CDS |
| TAATGTGAATGTTGTGCAAC+CGG | 0.488213 | 7_2:+88003336 | Msa1087270:CDS |
| GAGGAGGGCATATATCTTGA+AGG | 0.496344 | 7_2:+88003480 | Msa1087270:CDS |
| ACTTGATGTTGTTACAATCA+AGG | 0.497674 | 7_2:-88004778 | None:intergenic |
| GATTGAATACAGTGAGTTCA+AGG | 0.498483 | 7_2:+88003597 | Msa1087270:CDS |
| GATGTGGTCCTCCGTGTTAG+TGG | 0.498694 | 7_2:+88004974 | Msa1087270:CDS |
| TAATTAATGTTGCCAAAGAT+CGG | 0.504356 | 7_2:+88005177 | Msa1087270:CDS |
| GTCTAGCAAGAGTATATGAT+TGG | 0.505322 | 7_2:-88004899 | None:intergenic |
| TGATGACCGTGGAACAATAA+GGG | 0.506666 | 7_2:+88005541 | Msa1087270:CDS |
| CCACATTGAGAGATAGTGGT+TGG | 0.508823 | 7_2:+88005204 | Msa1087270:CDS |
| AGATATATGCCCTCCTCACT+TGG | 0.509334 | 7_2:-88003474 | None:intergenic |
| GCGTGCTAAATAAAATTATG+AGG | 0.510582 | 7_2:-88005911 | None:intergenic |
| TTGGCCACATTGAGAGATAG+TGG | 0.513146 | 7_2:+88005200 | Msa1087270:CDS |
| AAATATGGATGAAGAAATAC+CGG | 0.513881 | 7_2:+88005283 | Msa1087270:CDS |
| TCTTAATATTGTGCTTGCCA+TGG | 0.515356 | 7_2:+88005151 | Msa1087270:CDS |
| CAGAGTGGTGAGATATCTAC+AGG | 0.524590 | 7_2:+88004864 | Msa1087270:CDS |
| GACTTCCAGTGACATTCAAA+AGG | 0.524607 | 7_2:+88004056 | Msa1087270:CDS |
| ATCAAACCCGCTGCTTGAGA+TGG | 0.526184 | 7_2:-88005029 | None:intergenic |
| TATATCCGTCAAAGAGCAAA+TGG | 0.527675 | 7_2:+88004173 | Msa1087270:CDS |
| CACATTGAGAGATAGTGGTT+GGG | 0.527913 | 7_2:+88005205 | Msa1087270:CDS |
| ATACGAGGGCAAGGATATGA+TGG | 0.529594 | 7_2:+88004594 | Msa1087270:CDS |
| AGCAAATGGCGGTGATGTTG+AGG | 0.537038 | 7_2:+88004187 | Msa1087270:CDS |
| CAAGTGCATCTTGCAAGAGA+AGG | 0.538655 | 7_2:+88004796 | Msa1087270:CDS |
| TGAATTTGTTTCCTACGACC+TGG | 0.542287 | 7_2:-88003427 | None:intergenic |
| GAATGACAAAGGGGAAGTTG+TGG | 0.543448 | 7_2:+88004470 | Msa1087270:CDS |
| TCTTCATCCATATTTGGCAC+CGG | 0.546080 | 7_2:-88005275 | None:intergenic |
| TAATGTTGCCAAAGATCGGT+TGG | 0.546100 | 7_2:+88005181 | Msa1087270:CDS |
| AATGGACATAGAAAGCATAA+GGG | 0.549962 | 7_2:-88004674 | None:intergenic |
| AAGCTTATCAACATCAAACT+TGG | 0.550436 | 7_2:-88005480 | None:intergenic |
| CATTCACTCGAAAGAGGTCG+CGG | 0.550650 | 7_2:+88005876 | Msa1087270:CDS |
| CCAAAGTACTCGGCCCTCGC+GGG | 0.551249 | 7_2:-88003658 | None:intergenic |
| GAACCCCATCTAGTATCTCC+GGG | 0.553719 | 7_2:-88004921 | None:intergenic |
| TCAATGAGTTTGTAGACCAA+TGG | 0.554380 | 7_2:-88005677 | None:intergenic |
| TGACAAAATATGTGTGGAGA+TGG | 0.556791 | 7_2:+88005385 | Msa1087270:CDS |
| ACCAAAGTACTCGGCCCTCG+CGG | 0.558631 | 7_2:-88003659 | None:intergenic |
| AATCTACAGAACAAGTCAAA+CGG | 0.561983 | 7_2:-88003873 | None:intergenic |
| AATTCATTGGCCACATTAGG+CGG | 0.563218 | 7_2:-88003379 | None:intergenic |
| AAGTGCATCTTGCAAGAGAA+GGG | 0.564696 | 7_2:+88004797 | Msa1087270:CDS |
| AGGACCACATCTGATCCAAA+CGG | 0.565826 | 7_2:-88004962 | None:intergenic |
| CGTGAACCATCTCAAGCAGC+GGG | 0.567675 | 7_2:+88005023 | Msa1087270:CDS |
| AATGTGATTATGAAAGAGCT+TGG | 0.570775 | 7_2:+88004111 | Msa1087270:CDS |
| AACTTGGAGAAAGAGTTCTT+GGG | 0.571035 | 7_2:-88005464 | None:intergenic |
| GTTGCTCCCTTATTGTTCCA+CGG | 0.573835 | 7_2:-88005547 | None:intergenic |
| GTGGTGAGATATCTACAGGA+AGG | 0.577383 | 7_2:+88004868 | Msa1087270:CDS |
| GATGATATGTTACACAGAGC+GGG | 0.579590 | 7_2:+88005814 | Msa1087270:CDS |
| ACTCGAAAGAGGTCGCGGAA+AGG | 0.580379 | 7_2:+88005881 | Msa1087270:CDS |
| CTGATATTCAAGACCAAGTG+AGG | 0.582545 | 7_2:+88003461 | Msa1087270:CDS |
| TGGTGAGATATCTACAGGAA+GGG | 0.589589 | 7_2:+88004869 | Msa1087270:CDS |
| AGAAGAACCACCGCCTAATG+TGG | 0.590890 | 7_2:+88003369 | Msa1087270:CDS |
| GGTGAGATATCTACAGGAAG+GGG | 0.593776 | 7_2:+88004870 | Msa1087270:CDS |
| CATGGTATGAGAAGTATGCA+TGG | 0.600857 | 7_2:+88003575 | Msa1087270:CDS |
| GACATCGAAACCAAAGTACT+CGG | 0.604501 | 7_2:-88003668 | None:intergenic |
| TGCTCCGTTTGGATCAGATG+TGG | 0.608456 | 7_2:+88004958 | Msa1087270:CDS |
| GCACAAGGCATTGCTTTCCG+TGG | 0.613012 | 7_2:+88003913 | Msa1087270:CDS |
| TCAACGGAAGCTGTCGACAC+CGG | 0.616142 | 7_2:-88005716 | None:intergenic |
| TCATTGGCCACATTAGGCGG+TGG | 0.616172 | 7_2:-88003376 | None:intergenic |
| TATTCAAGACCAAGTGAGGA+GGG | 0.618445 | 7_2:+88003465 | Msa1087270:CDS |
| TTGTGCGTGATCCAGGTCGT+AGG | 0.619322 | 7_2:+88003416 | Msa1087270:CDS |
| CATACTAAGCACCACTAACA+CGG | 0.619748 | 7_2:-88004985 | None:intergenic |
| ATGGATCATCGCTTTAGTGA+AGG | 0.621529 | 7_2:+88005404 | Msa1087270:CDS |
| ATTTCAAGGATACGAGGGCA+AGG | 0.622770 | 7_2:+88004585 | Msa1087270:CDS |
| TCATATACTCTTGCTAGACC+CGG | 0.626236 | 7_2:+88004903 | Msa1087270:CDS |
| TGTAAAAGATACTACTTCTG+AGG | 0.626538 | 7_2:+88004515 | Msa1087270:CDS |
| ATATTCAAGACCAAGTGAGG+AGG | 0.627378 | 7_2:+88003464 | Msa1087270:CDS |
| AGGAGGGCATATATCTTGAA+GGG | 0.635940 | 7_2:+88003481 | Msa1087270:CDS |
| TAGACCCGGAGATACTAGAT+GGG | 0.636098 | 7_2:+88004917 | Msa1087270:CDS |
| TGCTATTGACAAAATATGTG+TGG | 0.637293 | 7_2:+88005379 | Msa1087270:CDS |
| TATCTATTTCAAGGATACGA+GGG | 0.655354 | 7_2:+88004580 | Msa1087270:CDS |
| ACACAATCACCAATTGCAAG+CGG | 0.658038 | 7_2:-88004707 | None:intergenic |
| GATGGAGCTTCAAATATGAG+AGG | 0.659823 | 7_2:+88004612 | Msa1087270:CDS |
| ACGTGAACCATCTCAAGCAG+CGG | 0.659878 | 7_2:+88005022 | Msa1087270:CDS |
| GGGGTCGTTCAAGACTAGAA+GGG | 0.668949 | 7_2:+88005309 | Msa1087270:CDS |
| GTCGTTCAAGACTAGAAGGG+AGG | 0.669642 | 7_2:+88005312 | Msa1087270:CDS |
| AAAACTACTTCTCTAAACAA+GGG | 0.670078 | 7_2:+88003946 | Msa1087270:CDS |
| CCAACCACTATCTCTCAATG+TGG | 0.671597 | 7_2:-88005204 | None:intergenic |
| TTATCTATTTCAAGGATACG+AGG | 0.672699 | 7_2:+88004579 | Msa1087270:CDS |
| GCAAGCGGTGAGCATAACAA+TGG | 0.674516 | 7_2:-88004692 | None:intergenic |
| ACTAGATATCTCATAGCACA+AGG | 0.678649 | 7_2:+88003898 | Msa1087270:CDS |
| TGATGATATGTTACACAGAG+CGG | 0.700873 | 7_2:+88005813 | Msa1087270:CDS |
| TGACTCCCAAATGGAGTACG+AGG | 0.701429 | 7_2:-88003532 | None:intergenic |
| GATGAAGAAATACCGGTTCG+GGG | 0.702224 | 7_2:+88005290 | Msa1087270:CDS |
| TTCTCTTTAAGAAACCCGCG+AGG | 0.710825 | 7_2:+88003644 | Msa1087270:CDS |
| TCTCTTTAAGAAACCCGCGA+GGG | 0.712369 | 7_2:+88003645 | Msa1087270:CDS |
| AGACCCGGAGATACTAGATG+GGG | 0.714598 | 7_2:+88004918 | Msa1087270:CDS |
| ATCCGTCAAAGAGCAAATGG+CGG | 0.716513 | 7_2:+88004176 | Msa1087270:CDS |
| GCAACAAGATGAACGATGCG+TGG | 0.731207 | 7_2:+88005780 | Msa1087270:CDS |
| ACTAAGCACCACTAACACGG+AGG | 0.791688 | 7_2:-88004982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAATAGATAATATAAAT+TGG | - | chr7_2:88004229-88004248 | None:intergenic | 10.0% |
| !! | ATTAACACATTAAATTAAAA+AGG | - | chr7_2:88004407-88004426 | None:intergenic | 10.0% |
| !!! | TATGGTTTTATGATTTAATA+AGG | - | chr7_2:88004310-88004329 | None:intergenic | 15.0% |
| !! | TTAAATTAAAAAGGTGAATA+AGG | - | chr7_2:88004398-88004417 | None:intergenic | 15.0% |
| !! | ATATTATCTATTATTCTCCA+TGG | + | chr7_2:88004233-88004252 | Msa1087270:intron | 20.0% |
| !! | AAGTTAATGTTAAAGTTGTT+TGG | + | chr7_2:88005089-88005108 | Msa1087270:CDS | 20.0% |
| !! | AATAGCAACATAAAAAATCT+CGG | - | chr7_2:88005366-88005385 | None:intergenic | 20.0% |
| ! | CTCATTTGGATTAAATTCAT+TGG | - | chr7_2:88003395-88003414 | None:intergenic | 25.0% |
| ! | AAAAACTACTTCTCTAAACA+AGG | + | chr7_2:88003945-88003964 | Msa1087270:CDS | 25.0% |
| ! | AAAACTACTTCTCTAAACAA+GGG | + | chr7_2:88003946-88003965 | Msa1087270:CDS | 25.0% |
| ! | AACGTGAATAAAGTTCAATA+TGG | - | chr7_2:88004328-88004347 | None:intergenic | 25.0% |
| ! | AAATATAATATGCCAAAGCA+GGG | - | chr7_2:88004440-88004459 | None:intergenic | 25.0% |
| ! | CTTTGGCATATTATATTTCT+AGG | + | chr7_2:88004442-88004461 | Msa1087270:intron | 25.0% |
| ! | GTTACAAGTTATCTATTTCA+AGG | + | chr7_2:88004571-88004590 | Msa1087270:CDS | 25.0% |
| ! | AATATGAGAGGTGAATTTAA+TGG | + | chr7_2:88004624-88004643 | Msa1087270:CDS | 25.0% |
| ! | TAATTAATGTTGCCAAAGAT+CGG | + | chr7_2:88005177-88005196 | Msa1087270:CDS | 25.0% |
| ! | AAATATGGATGAAGAAATAC+CGG | + | chr7_2:88005283-88005302 | Msa1087270:CDS | 25.0% |
| TTAAATTCATTGGCCACATT+AGG | - | chr7_2:88003385-88003404 | None:intergenic | 30.0% | |
| AAAAGCTTGCAAGATCATAT+TGG | + | chr7_2:88003730-88003749 | Msa1087270:CDS | 30.0% | |
| ! | TAATTTTGCTAGAGCAACTA+AGG | + | chr7_2:88003828-88003847 | Msa1087270:CDS | 30.0% |
| ACGGATCTTATACAATTCTT+CGG | - | chr7_2:88003857-88003876 | None:intergenic | 30.0% | |
| AATCTACAGAACAAGTCAAA+CGG | - | chr7_2:88003876-88003895 | None:intergenic | 30.0% | |
| !!! | GAGAAGTAGTTTTTTCATCA+TGG | - | chr7_2:88003939-88003958 | None:intergenic | 30.0% |
| !! | ATTTTAGAGAGATGGTAGAT+TGG | + | chr7_2:88003971-88003990 | Msa1087270:CDS | 30.0% |
| !! | TTTTAGAGAGATGGTAGATT+GGG | + | chr7_2:88003972-88003991 | Msa1087270:CDS | 30.0% |
| AATGTGATTATGAAAGAGCT+TGG | + | chr7_2:88004111-88004130 | Msa1087270:CDS | 30.0% | |
| CTTGTTAATGAAACAGTGAA+TGG | - | chr7_2:88004271-88004290 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGCTAATGAAACA+GGG | - | chr7_2:88004365-88004384 | None:intergenic | 30.0% |
| !! | TGTTTTTGTGCTAATGAAAC+AGG | - | chr7_2:88004366-88004385 | None:intergenic | 30.0% |
| GAAATATAATATGCCAAAGC+AGG | - | chr7_2:88004441-88004460 | None:intergenic | 30.0% | |
| ! | TCTAGGTTTTTGAATGACAA+AGG | + | chr7_2:88004459-88004478 | Msa1087270:intron | 30.0% |
| ! | CTAGGTTTTTGAATGACAAA+GGG | + | chr7_2:88004460-88004479 | Msa1087270:intron | 30.0% |
| ! | TAGGTTTTTGAATGACAAAG+GGG | + | chr7_2:88004461-88004480 | Msa1087270:intron | 30.0% |
| TGTAAAAGATACTACTTCTG+AGG | + | chr7_2:88004515-88004534 | Msa1087270:CDS | 30.0% | |
| TTATCTATTTCAAGGATACG+AGG | + | chr7_2:88004579-88004598 | Msa1087270:CDS | 30.0% | |
| TATCTATTTCAAGGATACGA+GGG | + | chr7_2:88004580-88004599 | Msa1087270:CDS | 30.0% | |
| ! | AATGGACATAGAAAGCATAA+GGG | - | chr7_2:88004677-88004696 | None:intergenic | 30.0% |
| ACTTGATGTTGTTACAATCA+AGG | - | chr7_2:88004781-88004800 | None:intergenic | 30.0% | |
| !! | ATTTTGAAGAAACATCAGAG+TGG | + | chr7_2:88004849-88004868 | Msa1087270:CDS | 30.0% |
| CTTAGTATGGTTCATAAAGA+TGG | + | chr7_2:88004999-88005018 | Msa1087270:CDS | 30.0% | |
| GGCAACATTAATTAAATCCA+TGG | - | chr7_2:88005171-88005190 | None:intergenic | 30.0% | |
| !! | CAAGAATTTTGTGTTGCTAA+AGG | + | chr7_2:88005248-88005267 | Msa1087270:CDS | 30.0% |
| GGTATTTCTTCATCCATATT+TGG | - | chr7_2:88005284-88005303 | None:intergenic | 30.0% | |
| TGCTATTGACAAAATATGTG+TGG | + | chr7_2:88005379-88005398 | Msa1087270:CDS | 30.0% | |
| AAGCTTATCAACATCAAACT+TGG | - | chr7_2:88005483-88005502 | None:intergenic | 30.0% | |
| CTTATGTACTTCAAGTGAAA+AGG | + | chr7_2:88005576-88005595 | Msa1087270:CDS | 30.0% | |
| AACATCTTCACAAGAAGAAA+AGG | - | chr7_2:88005609-88005628 | None:intergenic | 30.0% | |
| TTGTGAAGATGTTCAAAGTT+TGG | + | chr7_2:88005616-88005635 | Msa1087270:CDS | 30.0% | |
| GAAACATTTGGTATTTCCAT+TGG | + | chr7_2:88005661-88005680 | Msa1087270:CDS | 30.0% | |
| TAATGTGAATGTTGTGCAAC+CGG | + | chr7_2:88003336-88003355 | Msa1087270:CDS | 35.0% | |
| CTTGACAAATTTGGTTGCAT+TGG | - | chr7_2:88003508-88003527 | None:intergenic | 35.0% | |
| CGAGGAAAACTTGACAAATT+TGG | - | chr7_2:88003517-88003536 | None:intergenic | 35.0% | |
| !!! | CAAGAGCATTTTGTAGATCA+TGG | + | chr7_2:88003557-88003576 | Msa1087270:CDS | 35.0% |
| GATTGAATACAGTGAGTTCA+AGG | + | chr7_2:88003597-88003616 | Msa1087270:CDS | 35.0% | |
| CCAATCTTTAAATCCGTCTT+TGG | - | chr7_2:88003698-88003717 | None:intergenic | 35.0% | |
| ! | CCAAAGACGGATTTAAAGAT+TGG | + | chr7_2:88003695-88003714 | Msa1087270:CDS | 35.0% |
| ACTAGATATCTCATAGCACA+AGG | + | chr7_2:88003898-88003917 | Msa1087270:CDS | 35.0% | |
| !!! | TAGTTTTTTCATCATGGCCA+CGG | - | chr7_2:88003933-88003952 | None:intergenic | 35.0% |
| !! | CAAGGGTAATTTTAGAGAGA+TGG | + | chr7_2:88003963-88003982 | Msa1087270:CDS | 35.0% |
| ! | TTTTGCAATTCTTTCCACCA+CGG | - | chr7_2:88004035-88004054 | None:intergenic | 35.0% |
| ! | AAGTTCCTTTTGAATGTCAC+TGG | - | chr7_2:88004064-88004083 | None:intergenic | 35.0% |
| TATATCCGTCAAAGAGCAAA+TGG | + | chr7_2:88004173-88004192 | Msa1087270:CDS | 35.0% | |
| ! | ATTTTGTGATTTCCCTGCTT+TGG | + | chr7_2:88004425-88004444 | Msa1087270:intron | 35.0% |
| ! | CAATGGACATAGAAAGCATA+AGG | - | chr7_2:88004678-88004697 | None:intergenic | 35.0% |
| ! | GTCTAGCAAGAGTATATGAT+TGG | - | chr7_2:88004902-88004921 | None:intergenic | 35.0% |
| ! | AGCGGGTTTGATAGAAAAAA+TGG | + | chr7_2:88005040-88005059 | Msa1087270:CDS | 35.0% |
| TCTTAATATTGTGCTTGCCA+TGG | + | chr7_2:88005151-88005170 | Msa1087270:CDS | 35.0% | |
| !! | TTGTGTTGCTAAAGGTATTC+CGG | + | chr7_2:88005256-88005275 | Msa1087270:CDS | 35.0% |
| CAACATAAAAAATCTCGGCA+CGG | - | chr7_2:88005361-88005380 | None:intergenic | 35.0% | |
| TGACAAAATATGTGTGGAGA+TGG | + | chr7_2:88005385-88005404 | Msa1087270:CDS | 35.0% | |
| AACTTGGAGAAAGAGTTCTT+GGG | - | chr7_2:88005467-88005486 | None:intergenic | 35.0% | |
| AAACTTGGAGAAAGAGTTCT+TGG | - | chr7_2:88005468-88005487 | None:intergenic | 35.0% | |
| TCAAAGTTTGGCTATGAAGA+TGG | + | chr7_2:88005628-88005647 | Msa1087270:CDS | 35.0% | |
| GGTTCAAACTGAGAAACATT+TGG | + | chr7_2:88005649-88005668 | Msa1087270:CDS | 35.0% | |
| TCAATGAGTTTGTAGACCAA+TGG | - | chr7_2:88005680-88005699 | None:intergenic | 35.0% | |
| !! | TGAGTTAGCTTTGATATTGC+CGG | + | chr7_2:88005697-88005716 | Msa1087270:CDS | 35.0% |
| TGCTGAAAAAGCTCTTTCAA+CGG | - | chr7_2:88005735-88005754 | None:intergenic | 35.0% | |
| TGATGATATGTTACACAGAG+CGG | + | chr7_2:88005813-88005832 | Msa1087270:CDS | 35.0% | |
| AATTCATTGGCCACATTAGG+CGG | - | chr7_2:88003382-88003401 | None:intergenic | 40.0% | |
| ! | TGAATTTGTTTCCTACGACC+TGG | - | chr7_2:88003430-88003449 | None:intergenic | 40.0% |
| !! | CTCACTTGGTCTTGAATATC+AGG | - | chr7_2:88003463-88003482 | None:intergenic | 40.0% |
| CTGATATTCAAGACCAAGTG+AGG | + | chr7_2:88003461-88003480 | Msa1087270:CDS | 40.0% | |
| ATATTCAAGACCAAGTGAGG+AGG | + | chr7_2:88003464-88003483 | Msa1087270:CDS | 40.0% | |
| TATTCAAGACCAAGTGAGGA+GGG | + | chr7_2:88003465-88003484 | Msa1087270:CDS | 40.0% | |
| ! | AGGAGGGCATATATCTTGAA+GGG | + | chr7_2:88003481-88003500 | Msa1087270:CDS | 40.0% |
| ! | AGTTTTCCTCGTACTCCATT+TGG | + | chr7_2:88003526-88003545 | Msa1087270:CDS | 40.0% |
| ! | GTTTTCCTCGTACTCCATTT+GGG | + | chr7_2:88003527-88003546 | Msa1087270:CDS | 40.0% |
| ! | CATGGTATGAGAAGTATGCA+TGG | + | chr7_2:88003575-88003594 | Msa1087270:CDS | 40.0% |
| ! | GACATCGAAACCAAAGTACT+CGG | - | chr7_2:88003671-88003690 | None:intergenic | 40.0% |
| TTCGATGTCTTCACCAAAGA+CGG | + | chr7_2:88003682-88003701 | Msa1087270:CDS | 40.0% | |
| GACTTCCAGTGACATTCAAA+AGG | + | chr7_2:88004056-88004075 | Msa1087270:CDS | 40.0% | |
| AATGGTGTGTCAATAAGCCA+TGG | - | chr7_2:88004253-88004272 | None:intergenic | 40.0% | |
| TGCTAATGAAACAGGGAATG+AGG | - | chr7_2:88004358-88004377 | None:intergenic | 40.0% | |
| GATGGAGCTTCAAATATGAG+AGG | + | chr7_2:88004612-88004631 | Msa1087270:CDS | 40.0% | |
| ACACAATCACCAATTGCAAG+CGG | - | chr7_2:88004710-88004729 | None:intergenic | 40.0% | |
| AAGTGCATCTTGCAAGAGAA+GGG | + | chr7_2:88004797-88004816 | Msa1087270:CDS | 40.0% | |
| TGGTGAGATATCTACAGGAA+GGG | + | chr7_2:88004869-88004888 | Msa1087270:CDS | 40.0% | |
| TCATATACTCTTGCTAGACC+CGG | + | chr7_2:88004903-88004922 | Msa1087270:CDS | 40.0% | |
| CATACTAAGCACCACTAACA+CGG | - | chr7_2:88004988-88005007 | None:intergenic | 40.0% | |
| TAATGTTGCCAAAGATCGGT+TGG | + | chr7_2:88005181-88005200 | Msa1087270:CDS | 40.0% | |
| ! | CACATTGAGAGATAGTGGTT+GGG | + | chr7_2:88005205-88005224 | Msa1087270:CDS | 40.0% |
| TCTTCATCCATATTTGGCAC+CGG | - | chr7_2:88005278-88005297 | None:intergenic | 40.0% | |
| ! | TGGATGAAGAAATACCGGTT+CGG | + | chr7_2:88005288-88005307 | Msa1087270:CDS | 40.0% |
| AAAAAATCTCGGCACGGTAA+TGG | - | chr7_2:88005355-88005374 | None:intergenic | 40.0% | |
| ATGGATCATCGCTTTAGTGA+AGG | + | chr7_2:88005404-88005423 | Msa1087270:CDS | 40.0% | |
| ATGATGACCGTGGAACAATA+AGG | + | chr7_2:88005540-88005559 | Msa1087270:CDS | 40.0% | |
| TGATGACCGTGGAACAATAA+GGG | + | chr7_2:88005541-88005560 | Msa1087270:CDS | 40.0% | |
| GATGATATGTTACACAGAGC+GGG | + | chr7_2:88005814-88005833 | Msa1087270:CDS | 40.0% | |
| TTCGAACATTCACTCGAAAG+AGG | + | chr7_2:88005870-88005889 | Msa1087270:CDS | 40.0% | |
| GGTTCTTCTACTTCGACTTC+CGG | - | chr7_2:88003358-88003377 | None:intergenic | 45.0% | |
| GGATCACGCACAATCTCATT+TGG | - | chr7_2:88003409-88003428 | None:intergenic | 45.0% | |
| AATGAGATTGTGCGTGATCC+AGG | + | chr7_2:88003409-88003428 | Msa1087270:CDS | 45.0% | |
| AGATATATGCCCTCCTCACT+TGG | - | chr7_2:88003477-88003496 | None:intergenic | 45.0% | |
| ! | GAGGAGGGCATATATCTTGA+AGG | + | chr7_2:88003480-88003499 | Msa1087270:CDS | 45.0% |
| ! | GCTCTTGTTTGACTCCCAAA+TGG | - | chr7_2:88003544-88003563 | None:intergenic | 45.0% |
| ! | TTCTCTTTAAGAAACCCGCG+AGG | + | chr7_2:88003644-88003663 | Msa1087270:CDS | 45.0% |
| ! | TCTCTTTAAGAAACCCGCGA+GGG | + | chr7_2:88003645-88003664 | Msa1087270:CDS | 45.0% |
| ATCCGTCAAAGAGCAAATGG+CGG | + | chr7_2:88004176-88004195 | Msa1087270:CDS | 45.0% | |
| GAATGACAAAGGGGAAGTTG+TGG | + | chr7_2:88004470-88004489 | Msa1087270:CDS | 45.0% | |
| ATTTCAAGGATACGAGGGCA+AGG | + | chr7_2:88004585-88004604 | Msa1087270:CDS | 45.0% | |
| ATACGAGGGCAAGGATATGA+TGG | + | chr7_2:88004594-88004613 | Msa1087270:CDS | 45.0% | |
| TTATGCTCACCGCTTGCAAT+TGG | + | chr7_2:88004698-88004717 | Msa1087270:CDS | 45.0% | |
| CAAGTGCATCTTGCAAGAGA+AGG | + | chr7_2:88004796-88004815 | Msa1087270:CDS | 45.0% | |
| CAGAGTGGTGAGATATCTAC+AGG | + | chr7_2:88004864-88004883 | Msa1087270:CDS | 45.0% | |
| GTGGTGAGATATCTACAGGA+AGG | + | chr7_2:88004868-88004887 | Msa1087270:CDS | 45.0% | |
| GGTGAGATATCTACAGGAAG+GGG | + | chr7_2:88004870-88004889 | Msa1087270:CDS | 45.0% | |
| TAGACCCGGAGATACTAGAT+GGG | + | chr7_2:88004917-88004936 | Msa1087270:CDS | 45.0% | |
| TGAACCCCATCTAGTATCTC+CGG | - | chr7_2:88004925-88004944 | None:intergenic | 45.0% | |
| TCATACTACGTTGCTCCGTT+TGG | + | chr7_2:88004947-88004966 | Msa1087270:CDS | 45.0% | |
| AGGACCACATCTGATCCAAA+CGG | - | chr7_2:88004965-88004984 | None:intergenic | 45.0% | |
| CGTGTTAGTGGTGCTTAGTA+TGG | + | chr7_2:88004986-88005005 | Msa1087270:CDS | 45.0% | |
| TTGGCCACATTGAGAGATAG+TGG | + | chr7_2:88005200-88005219 | Msa1087270:CDS | 45.0% | |
| CCAACCACTATCTCTCAATG+TGG | - | chr7_2:88005207-88005226 | None:intergenic | 45.0% | |
| ! | CCACATTGAGAGATAGTGGT+TGG | + | chr7_2:88005204-88005223 | Msa1087270:CDS | 45.0% |
| ! | AGGTATTCCGGTGCCAAATA+TGG | + | chr7_2:88005268-88005287 | Msa1087270:CDS | 45.0% |
| !! | GGATGAAGAAATACCGGTTC+GGG | + | chr7_2:88005289-88005308 | Msa1087270:CDS | 45.0% |
| !! | GATGAAGAAATACCGGTTCG+GGG | + | chr7_2:88005290-88005309 | Msa1087270:CDS | 45.0% |
| !! | GACTTTTCTGATGATGACCG+TGG | + | chr7_2:88005530-88005549 | Msa1087270:CDS | 45.0% |
| GTTGCTCCCTTATTGTTCCA+CGG | - | chr7_2:88005550-88005569 | None:intergenic | 45.0% | |
| AGAAGAACCACCGCCTAATG+TGG | + | chr7_2:88003369-88003388 | Msa1087270:CDS | 50.0% | |
| TGACTCCCAAATGGAGTACG+AGG | - | chr7_2:88003535-88003554 | None:intergenic | 50.0% | |
| ! | GTGAGAGATGCTTTTGACCG+TGG | + | chr7_2:88004015-88004034 | Msa1087270:CDS | 50.0% |
| ! | AGAGATGCTTTTGACCGTGG+TGG | + | chr7_2:88004018-88004037 | Msa1087270:CDS | 50.0% |
| CACCGCCATTTGCTCTTTGA+CGG | - | chr7_2:88004181-88004200 | None:intergenic | 50.0% | |
| AGCAAATGGCGGTGATGTTG+AGG | + | chr7_2:88004187-88004206 | Msa1087270:CDS | 50.0% | |
| GCAAGCGGTGAGCATAACAA+TGG | - | chr7_2:88004695-88004714 | None:intergenic | 50.0% | |
| CTAGACCCGGAGATACTAGA+TGG | + | chr7_2:88004916-88004935 | Msa1087270:CDS | 50.0% | |
| AGACCCGGAGATACTAGATG+GGG | + | chr7_2:88004918-88004937 | Msa1087270:CDS | 50.0% | |
| GAACCCCATCTAGTATCTCC+GGG | - | chr7_2:88004924-88004943 | None:intergenic | 50.0% | |
| TGCTCCGTTTGGATCAGATG+TGG | + | chr7_2:88004958-88004977 | Msa1087270:CDS | 50.0% | |
| ACTAAGCACCACTAACACGG+AGG | - | chr7_2:88004985-88005004 | None:intergenic | 50.0% | |
| ACGTGAACCATCTCAAGCAG+CGG | + | chr7_2:88005022-88005041 | Msa1087270:CDS | 50.0% | |
| ATCAAACCCGCTGCTTGAGA+TGG | - | chr7_2:88005032-88005051 | None:intergenic | 50.0% | |
| CAATGTGGCCAACCGATCTT+TGG | - | chr7_2:88005192-88005211 | None:intergenic | 50.0% | |
| GGGGTCGTTCAAGACTAGAA+GGG | + | chr7_2:88005309-88005328 | Msa1087270:CDS | 50.0% | |
| GTCGTTCAAGACTAGAAGGG+AGG | + | chr7_2:88005312-88005331 | Msa1087270:CDS | 50.0% | |
| GCAACAAGATGAACGATGCG+TGG | + | chr7_2:88005780-88005799 | Msa1087270:CDS | 50.0% | |
| CATTCACTCGAAAGAGGTCG+CGG | + | chr7_2:88005876-88005895 | Msa1087270:CDS | 50.0% | |
| TCATTGGCCACATTAGGCGG+TGG | - | chr7_2:88003379-88003398 | None:intergenic | 55.0% | |
| TTGTGCGTGATCCAGGTCGT+AGG | + | chr7_2:88003416-88003435 | Msa1087270:CDS | 55.0% | |
| !! | GCACAAGGCATTGCTTTCCG+TGG | + | chr7_2:88003913-88003932 | Msa1087270:CDS | 55.0% |
| GATGTGGTCCTCCGTGTTAG+TGG | + | chr7_2:88004974-88004993 | Msa1087270:CDS | 55.0% | |
| CGTGAACCATCTCAAGCAGC+GGG | + | chr7_2:88005023-88005042 | Msa1087270:CDS | 55.0% | |
| AGTCTTGAACGACCCCGAAC+CGG | - | chr7_2:88005305-88005324 | None:intergenic | 55.0% | |
| CGGGGTCGTTCAAGACTAGA+AGG | + | chr7_2:88005308-88005327 | Msa1087270:CDS | 55.0% | |
| TCAACGGAAGCTGTCGACAC+CGG | - | chr7_2:88005719-88005738 | None:intergenic | 55.0% | |
| ACTCGAAAGAGGTCGCGGAA+AGG | + | chr7_2:88005881-88005900 | Msa1087270:CDS | 55.0% | |
| CTCGAAAGAGGTCGCGGAAA+GGG | + | chr7_2:88005882-88005901 | Msa1087270:CDS | 55.0% | |
| ! | ACCAAAGTACTCGGCCCTCG+CGG | - | chr7_2:88003662-88003681 | None:intergenic | 60.0% |
| ! | CCAAAGTACTCGGCCCTCGC+GGG | - | chr7_2:88003661-88003680 | None:intergenic | 65.0% |
| CCCGCGAGGGCCGAGTACTT+TGG | + | chr7_2:88003658-88003677 | Msa1087270:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 88003307 | 88005928 | 88003307 | ID=Msa1087270;Name=Msa1087270 |
| chr7_2 | mRNA | 88003307 | 88005928 | 88003307 | ID=Msa1087270-mRNA-1;Parent=Msa1087270;Name=Msa1087270-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|1|0|1|1|1|2|0|788 |
| chr7_2 | exon | 88003307 | 88004208 | 88003307 | ID=Msa1087270-mRNA-1:exon:24035;Parent=Msa1087270-mRNA-1 |
| chr7_2 | exon | 88004464 | 88005928 | 88004464 | ID=Msa1087270-mRNA-1:exon:24036;Parent=Msa1087270-mRNA-1 |
| chr7_2 | CDS | 88003307 | 88004208 | 88003307 | ID=Msa1087270-mRNA-1:cds;Parent=Msa1087270-mRNA-1 |
| chr7_2 | CDS | 88004464 | 88005928 | 88004464 | ID=Msa1087270-mRNA-1:cds;Parent=Msa1087270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
