Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972380 | XP_013450839.1 | 97.236 | 398 | 6 | 2 | 1 | 395 | 167 | 562 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972380 | A0A072U590 | 97.236 | 398 | 6 | 2 | 1 | 395 | 167 | 562 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0902940 | Msa0972380 | 0.931966 | 1.725462e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972380 | MtrunA17_Chr6g0451131 | 97.236 | 398 | 6 | 2 | 1 | 395 | 167 | 562 | 0.0 | 805 |
| Msa0972380 | MtrunA17_Chr8g0364941 | 47.727 | 396 | 160 | 8 | 1 | 393 | 170 | 521 | 1.64e-103 | 315 |
| Msa0972380 | MtrunA17_Chr5g0413801 | 54.054 | 259 | 98 | 6 | 1 | 259 | 167 | 404 | 9.37e-82 | 260 |
| Msa0972380 | MtrunA17_Chr2g0315511 | 33.992 | 253 | 121 | 7 | 1 | 253 | 164 | 370 | 9.70e-30 | 120 |
| Msa0972380 | MtrunA17_Chr8g0359721 | 49.153 | 118 | 45 | 3 | 1 | 116 | 73 | 177 | 3.46e-27 | 106 |
| Msa0972380 | MtrunA17_Chr8g0364901 | 33.945 | 109 | 64 | 3 | 2 | 110 | 128 | 228 | 1.10e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972380 | AT1G70280.1 | 44.081 | 397 | 159 | 13 | 2 | 395 | 103 | 439 | 3.47e-77 | 246 |
| Msa0972380 | AT1G70280.2 | 44.081 | 397 | 159 | 13 | 2 | 395 | 165 | 501 | 9.21e-77 | 246 |
| Msa0972380 | AT1G23880.2 | 42.500 | 360 | 140 | 12 | 2 | 359 | 103 | 397 | 8.58e-67 | 218 |
| Msa0972380 | AT1G23880.1 | 42.500 | 360 | 140 | 12 | 2 | 359 | 227 | 521 | 3.47e-66 | 220 |
| Msa0972380 | AT5G14890.1 | 49.367 | 237 | 87 | 10 | 1 | 233 | 173 | 380 | 7.30e-54 | 186 |
| Msa0972380 | AT5G14890.1 | 63.636 | 55 | 20 | 0 | 338 | 392 | 424 | 478 | 2.26e-15 | 78.2 |
| Msa0972380 | AT3G14860.1 | 33.333 | 243 | 115 | 10 | 1 | 240 | 171 | 369 | 2.00e-28 | 116 |
| Msa0972380 | AT3G14860.2 | 48.739 | 119 | 49 | 3 | 1 | 118 | 171 | 278 | 4.46e-28 | 115 |
| Msa0972380 | AT1G23890.1 | 42.574 | 101 | 54 | 3 | 2 | 100 | 123 | 221 | 5.33e-15 | 74.7 |
| Msa0972380 | AT1G23890.2 | 42.574 | 101 | 54 | 3 | 2 | 100 | 123 | 221 | 7.83e-15 | 75.9 |
Find 68 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTATGGTGACTAAATTT+TGG | 0.159816 | 6_4:-4658415 | None:intergenic |
| TCATCTTCATTAGGGATTAA+AGG | 0.208414 | 6_4:-4657731 | None:intergenic |
| AAAGGAGGCCTAACTGATTT+AGG | 0.228168 | 6_4:-4657713 | None:intergenic |
| CATTGCAGACACATTGAATA+TGG | 0.250525 | 6_4:+4656204 | Msa0972380:exon |
| CTTTCTGTTTGTCTATTTAT+CGG | 0.265414 | 6_4:-4658118 | None:intergenic |
| TTAACCTAGGTCGAATATTA+TGG | 0.266682 | 6_4:-4658429 | None:intergenic |
| CATCAACATGGCCTCCTAAT+TGG | 0.286978 | 6_4:-4656865 | None:intergenic |
| TAGAAGTAGTTGCTCTCTTT+TGG | 0.288214 | 6_4:+4656937 | Msa0972380:CDS |
| TCTCAAATTCATCTTCATTA+GGG | 0.302840 | 6_4:-4657739 | None:intergenic |
| AGACGAACCACCTCCTAATA+TGG | 0.307802 | 6_4:+4657979 | Msa0972380:CDS |
| TTCTCAAATTCATCTTCATT+AGG | 0.311852 | 6_4:-4657740 | None:intergenic |
| TTCTTGCATTGGCCATGAAT+TGG | 0.333315 | 6_4:-4657936 | None:intergenic |
| AGGATTCAAGGGCACATATA+AGG | 0.336115 | 6_4:+4657651 | Msa0972380:intron |
| GTTGTTGATGTTGATGTTGT+TGG | 0.343286 | 6_4:-4657886 | None:intergenic |
| GTGATAAAGGCTGTGGATTA+TGG | 0.344089 | 6_4:+4658388 | Msa0972380:CDS |
| GAAGGCTTCTTTGTTTCTCT+TGG | 0.356177 | 6_4:+4657770 | Msa0972380:CDS |
| TCCAATTCCTTGTTTGTGTA+AGG | 0.363813 | 6_4:-4658034 | None:intergenic |
| ATAGCTGCTCTTGTTTCTGC+TGG | 0.364729 | 6_4:+4657240 | Msa0972380:CDS |
| TTCATCACTGATCTTTCTAA+TGG | 0.373047 | 6_4:-4656227 | None:intergenic |
| ATAGACAACATTCCAATTCA+TGG | 0.380120 | 6_4:+4657924 | Msa0972380:CDS |
| ACGTGAGGCTATGGTGATAA+AGG | 0.389534 | 6_4:+4658375 | Msa0972380:CDS |
| TCCTTACACAAACAAGGAAT+TGG | 0.395649 | 6_4:+4658033 | Msa0972380:CDS |
| AGTGAACTCAAGTTCATCAA+TGG | 0.414203 | 6_4:+4657802 | Msa0972380:CDS |
| ATATGTTAGCATTACTTAAG+AGG | 0.422314 | 6_4:+4657274 | Msa0972380:CDS |
| ATCACAAAACTTTCTTGCAT+TGG | 0.425594 | 6_4:-4657947 | None:intergenic |
| GAAAACTTTGCATCCTCACT+TGG | 0.448935 | 6_4:-4656890 | None:intergenic |
| AAACAAGGAATTGGAAATGT+TGG | 0.451518 | 6_4:+4658042 | Msa0972380:CDS |
| GAGACAAATGAGATTGTGTT+TGG | 0.461655 | 6_4:+4658328 | Msa0972380:CDS |
| CGACCTAGGTTAAATTATGT+TGG | 0.467022 | 6_4:+4658439 | Msa0972380:CDS |
| AACTCTTGAATGAGAAATTG+AGG | 0.474736 | 6_4:+4658574 | Msa0972380:three_prime_UTR |
| CAATTAGGAGGCCATGTTGA+TGG | 0.476101 | 6_4:+4656866 | Msa0972380:CDS |
| ATAGGGGTAACAACCATTGC+AGG | 0.479173 | 6_4:+4656827 | Msa0972380:intron |
| GTGAACTCAAGTTCATCAAT+GGG | 0.484957 | 6_4:+4657803 | Msa0972380:CDS |
| AGGGCACATATAAGGACAAA+AGG | 0.486828 | 6_4:+4657659 | Msa0972380:CDS |
| TATGACAATAGTTTCCCCTT+AGG | 0.487484 | 6_4:+4657052 | Msa0972380:CDS |
| TTTGTTTCCATATTAGGAGG+TGG | 0.490274 | 6_4:-4657986 | None:intergenic |
| GTTTGTCTATTTATCGGCAC+AGG | 0.491919 | 6_4:-4658112 | None:intergenic |
| CTATTTATCGGCACAGGCGG+AGG | 0.494553 | 6_4:-4658106 | None:intergenic |
| GGCCTAACTGATTTAGGAGG+AGG | 0.539849 | 6_4:-4657707 | None:intergenic |
| GGAGGTGGTTCGTCTCCGTC+CGG | 0.539939 | 6_4:-4657971 | None:intergenic |
| GGCCTCCTCCTAAATCAGTT+AGG | 0.542090 | 6_4:+4657705 | Msa0972380:CDS |
| ATTAGAAAGATCAGTGATGA+AGG | 0.542470 | 6_4:+4656229 | Msa0972380:CDS |
| GAATTTGAGAAACATGATGA+AGG | 0.545619 | 6_4:+4657752 | Msa0972380:CDS |
| CTTTGCACCTTCGAATGTTG+TGG | 0.557658 | 6_4:-4658259 | None:intergenic |
| GGCTATGGTGATAAAGGCTG+TGG | 0.569335 | 6_4:+4658381 | Msa0972380:CDS |
| TGGTATTGATGATATGAAAG+TGG | 0.571733 | 6_4:-4657866 | None:intergenic |
| TTCTTCTCATAGTAACTCGA+TGG | 0.573141 | 6_4:-4658301 | None:intergenic |
| GGCCTTTGTTGTGATGCAAA+TGG | 0.574250 | 6_4:-4657686 | None:intergenic |
| GTAACAACCATTGCAGGTGG+AGG | 0.576648 | 6_4:+4656833 | Msa0972380:CDS |
| GTTAGCATTACTTAAGAGGA+GGG | 0.579193 | 6_4:+4657278 | Msa0972380:CDS |
| TGATGGAAGACGTGAGGCTA+TGG | 0.581508 | 6_4:+4658366 | Msa0972380:CDS |
| TGTTAGCATTACTTAAGAGG+AGG | 0.588173 | 6_4:+4657277 | Msa0972380:CDS |
| TGTCTATTTATCGGCACAGG+CGG | 0.589980 | 6_4:-4658109 | None:intergenic |
| GGTGCAGTTCAAGAACATGA+TGG | 0.596214 | 6_4:+4658349 | Msa0972380:CDS |
| CACCATTTGCATCACAACAA+AGG | 0.612868 | 6_4:+4657684 | Msa0972380:CDS |
| GGAGGCCTAACTGATTTAGG+AGG | 0.614176 | 6_4:-4657710 | None:intergenic |
| CCTCACTTGGACCATCAACA+TGG | 0.615549 | 6_4:-4656877 | None:intergenic |
| GTCACCATAATATTCGACCT+AGG | 0.624366 | 6_4:+4658425 | Msa0972380:CDS |
| ATTACTTAAGAGGAGGGTGA+CGG | 0.627394 | 6_4:+4657284 | Msa0972380:CDS |
| TAACCAACATAATTTAACCT+AGG | 0.630944 | 6_4:-4658442 | None:intergenic |
| GGGGTAACAACCATTGCAGG+TGG | 0.643595 | 6_4:+4656830 | Msa0972380:intron |
| TCTTCATTAGGGATTAAAGG+AGG | 0.645407 | 6_4:-4657728 | None:intergenic |
| AACATATCCTTACACAAACA+AGG | 0.645525 | 6_4:+4658027 | Msa0972380:CDS |
| TCAACAACCACAACATTCGA+AGG | 0.656042 | 6_4:+4658252 | Msa0972380:CDS |
| TCTTGAATGAGAAATTGAGG+AGG | 0.656085 | 6_4:+4658577 | Msa0972380:three_prime_UTR |
| CCATGTTGATGGTCCAAGTG+AGG | 0.680475 | 6_4:+4656877 | Msa0972380:CDS |
| AGAACATGATGGAAGACGTG+AGG | 0.685866 | 6_4:+4658360 | Msa0972380:CDS |
| TGGATCATATCATACCTAAG+GGG | 0.695856 | 6_4:-4657066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATACTAAAAATAACTTA+TGG | - | chr6_4:4656415-4656434 | None:intergenic | 10.0% |
| !!! | AAACAAGATTTTAAAATTTT+AGG | - | chr6_4:4657624-4657643 | None:intergenic | 10.0% |
| !! | AATATACTAAAAATAACTTA+TGG | - | chr6_4:4656415-4656434 | None:intergenic | 10.0% |
| !!! | AAACAAGATTTTAAAATTTT+AGG | - | chr6_4:4657624-4657643 | None:intergenic | 10.0% |
| !!! | AATAAGTTGAAAATATCTTA+TGG | - | chr6_4:4656610-4656629 | None:intergenic | 15.0% |
| !! | TGAAAAAATAATAACATTAC+AGG | - | chr6_4:4657216-4657235 | None:intergenic | 15.0% |
| !! | TGAAAAAATAATAACATTAC+AGG | + | chr6_4:4657216-4657235 | Msa0972380:intron | 15.0% |
| !!! | TACTATATATTTTGAAAACT+CGG | - | chr6_4:4657413-4657432 | None:intergenic | 15.0% |
| !!! | AGTTTTCAAAATATATAGTA+AGG | + | chr6_4:4657413-4657432 | Msa0972380:intron | 15.0% |
| !!! | GTTTTCAAAATATATAGTAA+GGG | + | chr6_4:4657414-4657433 | Msa0972380:intron | 15.0% |
| !!! | TTTTGTTTTATATTTTCTAC+TGG | + | chr6_4:4658533-4658552 | Msa0972380:three_prime_UTR | 15.0% |
| !!! | AATAAGTTGAAAATATCTTA+TGG | - | chr6_4:4656610-4656629 | None:intergenic | 15.0% |
| !! | TGAAAAAATAATAACATTAC+AGG | - | chr6_4:4657216-4657235 | None:intergenic | 15.0% |
| !! | TGAAAAAATAATAACATTAC+AGG | + | chr6_4:4657216-4657235 | Msa0972380:intron | 15.0% |
| !!! | TACTATATATTTTGAAAACT+CGG | - | chr6_4:4657413-4657432 | None:intergenic | 15.0% |
| !!! | AGTTTTCAAAATATATAGTA+AGG | + | chr6_4:4657413-4657432 | Msa0972380:intron | 15.0% |
| !!! | GTTTTCAAAATATATAGTAA+GGG | + | chr6_4:4657414-4657433 | Msa0972380:intron | 15.0% |
| !!! | TTTTGTTTTATATTTTCTAC+TGG | + | chr6_4:4658533-4658552 | Msa0972380:three_prime_UTR | 15.0% |
| !!! | GAATTTACCAAATTGATTTA+TGG | + | chr6_4:4656298-4656317 | Msa0972380:intron | 20.0% |
| !! | AAATAGACCATAAATCAATT+TGG | - | chr6_4:4656308-4656327 | None:intergenic | 20.0% |
| !!! | AAATTGATTTATGGTCTATT+TGG | + | chr6_4:4656307-4656326 | Msa0972380:intron | 20.0% |
| !!! | TGTTTAATTAAAGCGTTTAT+CGG | + | chr6_4:4656741-4656760 | Msa0972380:intron | 20.0% |
| !!! | TTTTGAAAGGTTATAGTTTA+GGG | - | chr6_4:4656774-4656793 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGGTTATAGTTT+AGG | - | chr6_4:4656775-4656794 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTTTTTTTTTGAA+AGG | - | chr6_4:4656787-4656806 | None:intergenic | 20.0% |
| !! | GCAAATGAAAATAAATACTA+AGG | - | chr6_4:4657105-4657124 | None:intergenic | 20.0% |
| !!! | TATATAGTAAGGGTTTTAAA+TGG | + | chr6_4:4657424-4657443 | Msa0972380:intron | 20.0% |
| !!! | TAAAATCTTGTTTCATTTTC+AGG | + | chr6_4:4657631-4657650 | Msa0972380:intron | 20.0% |
| !!! | ATATTATGGTGACTAAATTT+TGG | - | chr6_4:4658418-4658437 | None:intergenic | 20.0% |
| !!! | GAATTTACCAAATTGATTTA+TGG | + | chr6_4:4656298-4656317 | Msa0972380:intron | 20.0% |
| !! | AAATAGACCATAAATCAATT+TGG | - | chr6_4:4656308-4656327 | None:intergenic | 20.0% |
| !!! | AAATTGATTTATGGTCTATT+TGG | + | chr6_4:4656307-4656326 | Msa0972380:intron | 20.0% |
| !!! | TGTTTAATTAAAGCGTTTAT+CGG | + | chr6_4:4656741-4656760 | Msa0972380:intron | 20.0% |
| !!! | TTTTGAAAGGTTATAGTTTA+GGG | - | chr6_4:4656774-4656793 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGGTTATAGTTT+AGG | - | chr6_4:4656775-4656794 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTTTTTTTTTGAA+AGG | - | chr6_4:4656787-4656806 | None:intergenic | 20.0% |
| !! | GCAAATGAAAATAAATACTA+AGG | - | chr6_4:4657105-4657124 | None:intergenic | 20.0% |
| !!! | TATATAGTAAGGGTTTTAAA+TGG | + | chr6_4:4657424-4657443 | Msa0972380:intron | 20.0% |
| !!! | TAAAATCTTGTTTCATTTTC+AGG | + | chr6_4:4657631-4657650 | Msa0972380:intron | 20.0% |
| !!! | ATATTATGGTGACTAAATTT+TGG | - | chr6_4:4658418-4658437 | None:intergenic | 20.0% |
| !! | CCATAAACTGTTTTCTTTTT+TGG | - | chr6_4:4656488-4656507 | None:intergenic | 25.0% |
| ! | CCAAAAAAGAAAACAGTTTA+TGG | + | chr6_4:4656485-4656504 | Msa0972380:intron | 25.0% |
| !!! | AACTTATTTTCATGAGCTTT+TGG | + | chr6_4:4656622-4656641 | Msa0972380:intron | 25.0% |
| !!! | ACTTATTTTCATGAGCTTTT+GGG | + | chr6_4:4656623-4656642 | Msa0972380:intron | 25.0% |
| ! | AAAGCATGTCTTATAGTTTA+GGG | - | chr6_4:4656803-4656822 | None:intergenic | 25.0% |
| !! | AAAAGCATGTCTTATAGTTT+AGG | - | chr6_4:4656804-4656823 | None:intergenic | 25.0% |
| !!! | ATAAGACATGCTTTTTGTAT+AGG | + | chr6_4:4656809-4656828 | Msa0972380:intron | 25.0% |
| !!! | TAAGACATGCTTTTTGTATA+GGG | + | chr6_4:4656810-4656829 | Msa0972380:intron | 25.0% |
| ! | ACTAAGGATAAGATTAAATG+TGG | - | chr6_4:4657089-4657108 | None:intergenic | 25.0% |
| ! | ATATGTTAGCATTACTTAAG+AGG | + | chr6_4:4657274-4657293 | Msa0972380:CDS | 25.0% |
| ! | CATAAAAAATTGTTATGTCG+CGG | + | chr6_4:4657555-4657574 | Msa0972380:intron | 25.0% |
| !! | TATAACATGTTTAGAACTCA+AGG | - | chr6_4:4657593-4657612 | None:intergenic | 25.0% |
| ! | TCTCAAATTCATCTTCATTA+GGG | - | chr6_4:4657742-4657761 | None:intergenic | 25.0% |
| ! | TTCTCAAATTCATCTTCATT+AGG | - | chr6_4:4657743-4657762 | None:intergenic | 25.0% |
| !!! | ATCTTTTTGAGCTTATTCTT+AGG | + | chr6_4:4657830-4657849 | Msa0972380:CDS | 25.0% |
| !! | ATATGAAAGTGGTTTTCTTT+TGG | - | chr6_4:4657858-4657877 | None:intergenic | 25.0% |
| ! | TTGGAAAAAACAAGAGATAA+CGG | + | chr6_4:4658061-4658080 | Msa0972380:CDS | 25.0% |
| ! | CTTTCTGTTTGTCTATTTAT+CGG | - | chr6_4:4658121-4658140 | None:intergenic | 25.0% |
| ! | TAACCAACATAATTTAACCT+AGG | - | chr6_4:4658445-4658464 | None:intergenic | 25.0% |
| !! | CCATAAACTGTTTTCTTTTT+TGG | - | chr6_4:4656488-4656507 | None:intergenic | 25.0% |
| ! | CCAAAAAAGAAAACAGTTTA+TGG | + | chr6_4:4656485-4656504 | Msa0972380:intron | 25.0% |
| !!! | AACTTATTTTCATGAGCTTT+TGG | + | chr6_4:4656622-4656641 | Msa0972380:intron | 25.0% |
| !!! | ACTTATTTTCATGAGCTTTT+GGG | + | chr6_4:4656623-4656642 | Msa0972380:intron | 25.0% |
| ! | AAAGCATGTCTTATAGTTTA+GGG | - | chr6_4:4656803-4656822 | None:intergenic | 25.0% |
| !! | AAAAGCATGTCTTATAGTTT+AGG | - | chr6_4:4656804-4656823 | None:intergenic | 25.0% |
| !!! | ATAAGACATGCTTTTTGTAT+AGG | + | chr6_4:4656809-4656828 | Msa0972380:intron | 25.0% |
| !!! | TAAGACATGCTTTTTGTATA+GGG | + | chr6_4:4656810-4656829 | Msa0972380:intron | 25.0% |
| ! | ACTAAGGATAAGATTAAATG+TGG | - | chr6_4:4657089-4657108 | None:intergenic | 25.0% |
| ! | ATATGTTAGCATTACTTAAG+AGG | + | chr6_4:4657274-4657293 | Msa0972380:CDS | 25.0% |
| ! | CATAAAAAATTGTTATGTCG+CGG | + | chr6_4:4657555-4657574 | Msa0972380:intron | 25.0% |
| !! | TATAACATGTTTAGAACTCA+AGG | - | chr6_4:4657593-4657612 | None:intergenic | 25.0% |
| ! | TCTCAAATTCATCTTCATTA+GGG | - | chr6_4:4657742-4657761 | None:intergenic | 25.0% |
| ! | TTCTCAAATTCATCTTCATT+AGG | - | chr6_4:4657743-4657762 | None:intergenic | 25.0% |
| !!! | ATCTTTTTGAGCTTATTCTT+AGG | + | chr6_4:4657830-4657849 | Msa0972380:CDS | 25.0% |
| !! | ATATGAAAGTGGTTTTCTTT+TGG | - | chr6_4:4657858-4657877 | None:intergenic | 25.0% |
| ! | TTGGAAAAAACAAGAGATAA+CGG | + | chr6_4:4658061-4658080 | Msa0972380:CDS | 25.0% |
| ! | CTTTCTGTTTGTCTATTTAT+CGG | - | chr6_4:4658121-4658140 | None:intergenic | 25.0% |
| ! | TAACCAACATAATTTAACCT+AGG | - | chr6_4:4658445-4658464 | None:intergenic | 25.0% |
| TTCATCACTGATCTTTCTAA+TGG | - | chr6_4:4656230-4656249 | None:intergenic | 30.0% | |
| ATTAGAAAGATCAGTGATGA+AGG | + | chr6_4:4656229-4656248 | Msa0972380:CDS | 30.0% | |
| ! | TAAACACTTGAGAGACTTTT+TGG | + | chr6_4:4656359-4656378 | Msa0972380:intron | 30.0% |
| ATAACTTATGGACATGTCAT+CGG | - | chr6_4:4656403-4656422 | None:intergenic | 30.0% | |
| !! | CAGCTTTTGAAAACAGTTTA+TGG | + | chr6_4:4656453-4656472 | Msa0972380:intron | 30.0% |
| !! | AAGACATGCTTTTTGTATAG+GGG | + | chr6_4:4656811-4656830 | Msa0972380:intron | 30.0% |
| ! | AAACTCGGTATCCAATTTTA+GGG | - | chr6_4:4657398-4657417 | None:intergenic | 30.0% |
| ! | AAAACTCGGTATCCAATTTT+AGG | - | chr6_4:4657399-4657418 | None:intergenic | 30.0% |
| !!! | ATAGTAAGGGTTTTAAATGG+TGG | + | chr6_4:4657427-4657446 | Msa0972380:intron | 30.0% |
| !! | TGTTTCATTTTCAGGATTCA+AGG | + | chr6_4:4657639-4657658 | Msa0972380:intron | 30.0% |
| !! | GTTTCATTTTCAGGATTCAA+GGG | + | chr6_4:4657640-4657659 | Msa0972380:intron | 30.0% |
| TCATCTTCATTAGGGATTAA+AGG | - | chr6_4:4657734-4657753 | None:intergenic | 30.0% | |
| GAATTTGAGAAACATGATGA+AGG | + | chr6_4:4657752-4657771 | Msa0972380:CDS | 30.0% | |
| !! | TGGTATTGATGATATGAAAG+TGG | - | chr6_4:4657869-4657888 | None:intergenic | 30.0% |
| ATAGACAACATTCCAATTCA+TGG | + | chr6_4:4657924-4657943 | Msa0972380:CDS | 30.0% | |
| ATCACAAAACTTTCTTGCAT+TGG | - | chr6_4:4657950-4657969 | None:intergenic | 30.0% | |
| !! | GTTTTTGTTTCCATATTAGG+AGG | - | chr6_4:4657992-4658011 | None:intergenic | 30.0% |
| !! | GGTGTTTTTGTTTCCATATT+AGG | - | chr6_4:4657995-4658014 | None:intergenic | 30.0% |
| AAACAAAAACACCTTCACAA+AGG | + | chr6_4:4658002-4658021 | Msa0972380:CDS | 30.0% | |
| AACATATCCTTACACAAACA+AGG | + | chr6_4:4658027-4658046 | Msa0972380:CDS | 30.0% | |
| AAACAAGGAATTGGAAATGT+TGG | + | chr6_4:4658042-4658061 | Msa0972380:CDS | 30.0% | |
| TTAACCTAGGTCGAATATTA+TGG | - | chr6_4:4658432-4658451 | None:intergenic | 30.0% | |
| AACTCTTGAATGAGAAATTG+AGG | + | chr6_4:4658574-4658593 | Msa0972380:three_prime_UTR | 30.0% | |
| TTCATCACTGATCTTTCTAA+TGG | - | chr6_4:4656230-4656249 | None:intergenic | 30.0% | |
| ATTAGAAAGATCAGTGATGA+AGG | + | chr6_4:4656229-4656248 | Msa0972380:CDS | 30.0% | |
| ! | TAAACACTTGAGAGACTTTT+TGG | + | chr6_4:4656359-4656378 | Msa0972380:intron | 30.0% |
| ATAACTTATGGACATGTCAT+CGG | - | chr6_4:4656403-4656422 | None:intergenic | 30.0% | |
| !! | CAGCTTTTGAAAACAGTTTA+TGG | + | chr6_4:4656453-4656472 | Msa0972380:intron | 30.0% |
| !! | AAGACATGCTTTTTGTATAG+GGG | + | chr6_4:4656811-4656830 | Msa0972380:intron | 30.0% |
| ! | AAACTCGGTATCCAATTTTA+GGG | - | chr6_4:4657398-4657417 | None:intergenic | 30.0% |
| ! | AAAACTCGGTATCCAATTTT+AGG | - | chr6_4:4657399-4657418 | None:intergenic | 30.0% |
| !!! | ATAGTAAGGGTTTTAAATGG+TGG | + | chr6_4:4657427-4657446 | Msa0972380:intron | 30.0% |
| !! | TGTTTCATTTTCAGGATTCA+AGG | + | chr6_4:4657639-4657658 | Msa0972380:intron | 30.0% |
| !! | GTTTCATTTTCAGGATTCAA+GGG | + | chr6_4:4657640-4657659 | Msa0972380:intron | 30.0% |
| TCATCTTCATTAGGGATTAA+AGG | - | chr6_4:4657734-4657753 | None:intergenic | 30.0% | |
| GAATTTGAGAAACATGATGA+AGG | + | chr6_4:4657752-4657771 | Msa0972380:CDS | 30.0% | |
| !! | TGGTATTGATGATATGAAAG+TGG | - | chr6_4:4657869-4657888 | None:intergenic | 30.0% |
| ATAGACAACATTCCAATTCA+TGG | + | chr6_4:4657924-4657943 | Msa0972380:CDS | 30.0% | |
| ATCACAAAACTTTCTTGCAT+TGG | - | chr6_4:4657950-4657969 | None:intergenic | 30.0% | |
| !! | GTTTTTGTTTCCATATTAGG+AGG | - | chr6_4:4657992-4658011 | None:intergenic | 30.0% |
| !! | GGTGTTTTTGTTTCCATATT+AGG | - | chr6_4:4657995-4658014 | None:intergenic | 30.0% |
| AAACAAAAACACCTTCACAA+AGG | + | chr6_4:4658002-4658021 | Msa0972380:CDS | 30.0% | |
| AACATATCCTTACACAAACA+AGG | + | chr6_4:4658027-4658046 | Msa0972380:CDS | 30.0% | |
| AAACAAGGAATTGGAAATGT+TGG | + | chr6_4:4658042-4658061 | Msa0972380:CDS | 30.0% | |
| TTAACCTAGGTCGAATATTA+TGG | - | chr6_4:4658432-4658451 | None:intergenic | 30.0% | |
| AACTCTTGAATGAGAAATTG+AGG | + | chr6_4:4658574-4658593 | Msa0972380:three_prime_UTR | 30.0% | |
| CATTGCAGACACATTGAATA+TGG | + | chr6_4:4656204-4656223 | Msa0972380:exon | 35.0% | |
| ! | ACTGTTTTCAAAAGCTGTCT+TGG | - | chr6_4:4656450-4656469 | None:intergenic | 35.0% |
| ! | TAGAAGTAGTTGCTCTCTTT+TGG | + | chr6_4:4656937-4656956 | Msa0972380:CDS | 35.0% |
| TATGACAATAGTTTCCCCTT+AGG | + | chr6_4:4657052-4657071 | Msa0972380:CDS | 35.0% | |
| TGGATCATATCATACCTAAG+GGG | - | chr6_4:4657069-4657088 | None:intergenic | 35.0% | |
| GTGGATCATATCATACCTAA+GGG | - | chr6_4:4657070-4657089 | None:intergenic | 35.0% | |
| TGTGGATCATATCATACCTA+AGG | - | chr6_4:4657071-4657090 | None:intergenic | 35.0% | |
| !!! | CTTGTTTCTGCTGGATTTTT+TGG | - | chr6_4:4657249-4657268 | None:intergenic | 35.0% |
| !!! | CTTGTTTCTGCTGGATTTTT+TGG | + | chr6_4:4657249-4657268 | Msa0972380:CDS | 35.0% |
| TGTTAGCATTACTTAAGAGG+AGG | + | chr6_4:4657277-4657296 | Msa0972380:CDS | 35.0% | |
| GTTAGCATTACTTAAGAGGA+GGG | + | chr6_4:4657278-4657297 | Msa0972380:CDS | 35.0% | |
| AAAAAATTTGTCACCCTGAG+GGG | - | chr6_4:4657356-4657375 | None:intergenic | 35.0% | |
| CAAAAAATTTGTCACCCTGA+GGG | - | chr6_4:4657357-4657376 | None:intergenic | 35.0% | |
| TCAAAAAATTTGTCACCCTG+AGG | - | chr6_4:4657358-4657377 | None:intergenic | 35.0% | |
| TTAAATGGTGGTCATGGTAA+CGG | + | chr6_4:4657439-4657458 | Msa0972380:intron | 35.0% | |
| TCTTCATTAGGGATTAAAGG+AGG | - | chr6_4:4657731-4657750 | None:intergenic | 35.0% | |
| AGTGAACTCAAGTTCATCAA+TGG | + | chr6_4:4657802-4657821 | Msa0972380:CDS | 35.0% | |
| GTGAACTCAAGTTCATCAAT+GGG | + | chr6_4:4657803-4657822 | Msa0972380:CDS | 35.0% | |
| GTTGTTGATGTTGATGTTGT+TGG | - | chr6_4:4657889-4657908 | None:intergenic | 35.0% | |
| !! | GCAAGAAAGTTTTGTGATTC+CGG | + | chr6_4:4657952-4657971 | Msa0972380:CDS | 35.0% |
| TTTGTTTCCATATTAGGAGG+TGG | - | chr6_4:4657989-4658008 | None:intergenic | 35.0% | |
| ! | GGATATGTTTTCCTTTGTGA+AGG | - | chr6_4:4658016-4658035 | None:intergenic | 35.0% |
| TCCTTACACAAACAAGGAAT+TGG | + | chr6_4:4658033-4658052 | Msa0972380:CDS | 35.0% | |
| ! | TCCAATTCCTTGTTTGTGTA+AGG | - | chr6_4:4658037-4658056 | None:intergenic | 35.0% |
| TTCTTCTCATAGTAACTCGA+TGG | - | chr6_4:4658304-4658323 | None:intergenic | 35.0% | |
| GAGACAAATGAGATTGTGTT+TGG | + | chr6_4:4658328-4658347 | Msa0972380:CDS | 35.0% | |
| CGACCTAGGTTAAATTATGT+TGG | + | chr6_4:4658439-4658458 | Msa0972380:CDS | 35.0% | |
| TCTTGAATGAGAAATTGAGG+AGG | + | chr6_4:4658577-4658596 | Msa0972380:three_prime_UTR | 35.0% | |
| CATTGCAGACACATTGAATA+TGG | + | chr6_4:4656204-4656223 | Msa0972380:exon | 35.0% | |
| ! | ACTGTTTTCAAAAGCTGTCT+TGG | - | chr6_4:4656450-4656469 | None:intergenic | 35.0% |
| ! | TAGAAGTAGTTGCTCTCTTT+TGG | + | chr6_4:4656937-4656956 | Msa0972380:CDS | 35.0% |
| TATGACAATAGTTTCCCCTT+AGG | + | chr6_4:4657052-4657071 | Msa0972380:CDS | 35.0% | |
| TGGATCATATCATACCTAAG+GGG | - | chr6_4:4657069-4657088 | None:intergenic | 35.0% | |
| GTGGATCATATCATACCTAA+GGG | - | chr6_4:4657070-4657089 | None:intergenic | 35.0% | |
| TGTGGATCATATCATACCTA+AGG | - | chr6_4:4657071-4657090 | None:intergenic | 35.0% | |
| !!! | CTTGTTTCTGCTGGATTTTT+TGG | - | chr6_4:4657249-4657268 | None:intergenic | 35.0% |
| !!! | CTTGTTTCTGCTGGATTTTT+TGG | + | chr6_4:4657249-4657268 | Msa0972380:CDS | 35.0% |
| TGTTAGCATTACTTAAGAGG+AGG | + | chr6_4:4657277-4657296 | Msa0972380:CDS | 35.0% | |
| GTTAGCATTACTTAAGAGGA+GGG | + | chr6_4:4657278-4657297 | Msa0972380:CDS | 35.0% | |
| AAAAAATTTGTCACCCTGAG+GGG | - | chr6_4:4657356-4657375 | None:intergenic | 35.0% | |
| CAAAAAATTTGTCACCCTGA+GGG | - | chr6_4:4657357-4657376 | None:intergenic | 35.0% | |
| TCAAAAAATTTGTCACCCTG+AGG | - | chr6_4:4657358-4657377 | None:intergenic | 35.0% | |
| TTAAATGGTGGTCATGGTAA+CGG | + | chr6_4:4657439-4657458 | Msa0972380:intron | 35.0% | |
| TCTTCATTAGGGATTAAAGG+AGG | - | chr6_4:4657731-4657750 | None:intergenic | 35.0% | |
| AGTGAACTCAAGTTCATCAA+TGG | + | chr6_4:4657802-4657821 | Msa0972380:CDS | 35.0% | |
| GTGAACTCAAGTTCATCAAT+GGG | + | chr6_4:4657803-4657822 | Msa0972380:CDS | 35.0% | |
| GTTGTTGATGTTGATGTTGT+TGG | - | chr6_4:4657889-4657908 | None:intergenic | 35.0% | |
| !! | GCAAGAAAGTTTTGTGATTC+CGG | + | chr6_4:4657952-4657971 | Msa0972380:CDS | 35.0% |
| TTTGTTTCCATATTAGGAGG+TGG | - | chr6_4:4657989-4658008 | None:intergenic | 35.0% | |
| ! | GGATATGTTTTCCTTTGTGA+AGG | - | chr6_4:4658016-4658035 | None:intergenic | 35.0% |
| TCCTTACACAAACAAGGAAT+TGG | + | chr6_4:4658033-4658052 | Msa0972380:CDS | 35.0% | |
| ! | TCCAATTCCTTGTTTGTGTA+AGG | - | chr6_4:4658037-4658056 | None:intergenic | 35.0% |
| TTCTTCTCATAGTAACTCGA+TGG | - | chr6_4:4658304-4658323 | None:intergenic | 35.0% | |
| GAGACAAATGAGATTGTGTT+TGG | + | chr6_4:4658328-4658347 | Msa0972380:CDS | 35.0% | |
| CGACCTAGGTTAAATTATGT+TGG | + | chr6_4:4658439-4658458 | Msa0972380:CDS | 35.0% | |
| TCTTGAATGAGAAATTGAGG+AGG | + | chr6_4:4658577-4658596 | Msa0972380:three_prime_UTR | 35.0% | |
| AAGCTGTCTTGGAGAGTTTA+TGG | - | chr6_4:4656439-4656458 | None:intergenic | 40.0% | |
| GAAAACTTTGCATCCTCACT+TGG | - | chr6_4:4656893-4656912 | None:intergenic | 40.0% | |
| ! | AAGTAGTTGCTCTCTTTTGG+TGG | + | chr6_4:4656940-4656959 | Msa0972380:CDS | 40.0% |
| ATTACTTAAGAGGAGGGTGA+CGG | + | chr6_4:4657284-4657303 | Msa0972380:CDS | 40.0% | |
| TTCTATACAATGACCCCTCA+GGG | + | chr6_4:4657340-4657359 | Msa0972380:intron | 40.0% | |
| ! | TTTTGACCCCTCAGATTAGT+CGG | + | chr6_4:4657372-4657391 | Msa0972380:intron | 40.0% |
| ! | AGATTAGTCGGCCCTAAAAT+TGG | + | chr6_4:4657384-4657403 | Msa0972380:intron | 40.0% |
| !!! | AGGGTTTTAAATGGTGGTCA+TGG | + | chr6_4:4657433-4657452 | Msa0972380:intron | 40.0% |
| CGCTGCAATCGTTAATATTG+CGG | + | chr6_4:4657471-4657490 | Msa0972380:intron | 40.0% | |
| TGAGGTTGCATCAATCACAT+TGG | - | chr6_4:4657508-4657527 | None:intergenic | 40.0% | |
| ! | AGGATTCAAGGGCACATATA+AGG | + | chr6_4:4657651-4657670 | Msa0972380:intron | 40.0% |
| AGGGCACATATAAGGACAAA+AGG | + | chr6_4:4657659-4657678 | Msa0972380:CDS | 40.0% | |
| CACCATTTGCATCACAACAA+AGG | + | chr6_4:4657684-4657703 | Msa0972380:CDS | 40.0% | |
| ! | AAAGGAGGCCTAACTGATTT+AGG | - | chr6_4:4657716-4657735 | None:intergenic | 40.0% |
| ! | GAAGGCTTCTTTGTTTCTCT+TGG | + | chr6_4:4657770-4657789 | Msa0972380:CDS | 40.0% |
| ! | TTCTTGCATTGGCCATGAAT+TGG | - | chr6_4:4657939-4657958 | None:intergenic | 40.0% |
| !! | GAAAGTTTTGTGATTCCGGA+CGG | + | chr6_4:4657956-4657975 | Msa0972380:CDS | 40.0% |
| GTTTGTCTATTTATCGGCAC+AGG | - | chr6_4:4658115-4658134 | None:intergenic | 40.0% | |
| TCAACAACCACAACATTCGA+AGG | + | chr6_4:4658252-4658271 | Msa0972380:CDS | 40.0% | |
| ! | GTGATAAAGGCTGTGGATTA+TGG | + | chr6_4:4658388-4658407 | Msa0972380:CDS | 40.0% |
| GTCACCATAATATTCGACCT+AGG | + | chr6_4:4658425-4658444 | Msa0972380:CDS | 40.0% | |
| AAGCTGTCTTGGAGAGTTTA+TGG | - | chr6_4:4656439-4656458 | None:intergenic | 40.0% | |
| GAAAACTTTGCATCCTCACT+TGG | - | chr6_4:4656893-4656912 | None:intergenic | 40.0% | |
| ! | AAGTAGTTGCTCTCTTTTGG+TGG | + | chr6_4:4656940-4656959 | Msa0972380:CDS | 40.0% |
| ATTACTTAAGAGGAGGGTGA+CGG | + | chr6_4:4657284-4657303 | Msa0972380:CDS | 40.0% | |
| TTCTATACAATGACCCCTCA+GGG | + | chr6_4:4657340-4657359 | Msa0972380:intron | 40.0% | |
| ! | TTTTGACCCCTCAGATTAGT+CGG | + | chr6_4:4657372-4657391 | Msa0972380:intron | 40.0% |
| ! | AGATTAGTCGGCCCTAAAAT+TGG | + | chr6_4:4657384-4657403 | Msa0972380:intron | 40.0% |
| !!! | AGGGTTTTAAATGGTGGTCA+TGG | + | chr6_4:4657433-4657452 | Msa0972380:intron | 40.0% |
| CGCTGCAATCGTTAATATTG+CGG | + | chr6_4:4657471-4657490 | Msa0972380:intron | 40.0% | |
| TGAGGTTGCATCAATCACAT+TGG | - | chr6_4:4657508-4657527 | None:intergenic | 40.0% | |
| ! | AGGATTCAAGGGCACATATA+AGG | + | chr6_4:4657651-4657670 | Msa0972380:intron | 40.0% |
| AGGGCACATATAAGGACAAA+AGG | + | chr6_4:4657659-4657678 | Msa0972380:CDS | 40.0% | |
| CACCATTTGCATCACAACAA+AGG | + | chr6_4:4657684-4657703 | Msa0972380:CDS | 40.0% | |
| ! | AAAGGAGGCCTAACTGATTT+AGG | - | chr6_4:4657716-4657735 | None:intergenic | 40.0% |
| ! | GAAGGCTTCTTTGTTTCTCT+TGG | + | chr6_4:4657770-4657789 | Msa0972380:CDS | 40.0% |
| ! | TTCTTGCATTGGCCATGAAT+TGG | - | chr6_4:4657939-4657958 | None:intergenic | 40.0% |
| !! | GAAAGTTTTGTGATTCCGGA+CGG | + | chr6_4:4657956-4657975 | Msa0972380:CDS | 40.0% |
| GTTTGTCTATTTATCGGCAC+AGG | - | chr6_4:4658115-4658134 | None:intergenic | 40.0% | |
| TCAACAACCACAACATTCGA+AGG | + | chr6_4:4658252-4658271 | Msa0972380:CDS | 40.0% | |
| ! | GTGATAAAGGCTGTGGATTA+TGG | + | chr6_4:4658388-4658407 | Msa0972380:CDS | 40.0% |
| GTCACCATAATATTCGACCT+AGG | + | chr6_4:4658425-4658444 | Msa0972380:CDS | 40.0% | |
| ATAGGGGTAACAACCATTGC+AGG | + | chr6_4:4656827-4656846 | Msa0972380:intron | 45.0% | |
| ! | TCTTTTTCCTCCACCTGCAA+TGG | - | chr6_4:4656843-4656862 | None:intergenic | 45.0% |
| ATTGCAGGTGGAGGAAAAAG+AGG | + | chr6_4:4656842-4656861 | Msa0972380:CDS | 45.0% | |
| GGAGGAAAAAGAGGCCAATT+AGG | + | chr6_4:4656851-4656870 | Msa0972380:CDS | 45.0% | |
| GGAAAAAGAGGCCAATTAGG+AGG | + | chr6_4:4656854-4656873 | Msa0972380:CDS | 45.0% | |
| CATCAACATGGCCTCCTAAT+TGG | - | chr6_4:4656868-4656887 | None:intergenic | 45.0% | |
| CAATTAGGAGGCCATGTTGA+TGG | + | chr6_4:4656866-4656885 | Msa0972380:CDS | 45.0% | |
| ! | TAGTTGCTCTCTTTTGGTGG+TGG | + | chr6_4:4656943-4656962 | Msa0972380:CDS | 45.0% |
| !!! | TCTCTTTTGGTGGTGGATAG+AGG | + | chr6_4:4656950-4656969 | Msa0972380:CDS | 45.0% |
| !! | ATAGCTGCTCTTGTTTCTGC+TGG | - | chr6_4:4657240-4657259 | None:intergenic | 45.0% |
| !! | ATAGCTGCTCTTGTTTCTGC+TGG | + | chr6_4:4657240-4657259 | Msa0972380:CDS | 45.0% |
| CTTCTATACAATGACCCCTC+AGG | + | chr6_4:4657339-4657358 | Msa0972380:intron | 45.0% | |
| ! | TTTAGGGCCGACTAATCTGA+GGG | - | chr6_4:4657382-4657401 | None:intergenic | 45.0% |
| !!! | TTTTAGGGCCGACTAATCTG+AGG | - | chr6_4:4657383-4657402 | None:intergenic | 45.0% |
| GATTGATGCAACCTCAGAAG+CGG | + | chr6_4:4657512-4657531 | Msa0972380:intron | 45.0% | |
| AGAACTCAAGGTAGCGATCA+AGG | - | chr6_4:4657581-4657600 | None:intergenic | 45.0% | |
| ! | GGCCTTTGTTGTGATGCAAA+TGG | - | chr6_4:4657689-4657708 | None:intergenic | 45.0% |
| AGACGAACCACCTCCTAATA+TGG | + | chr6_4:4657979-4657998 | Msa0972380:CDS | 45.0% | |
| TGTCTATTTATCGGCACAGG+CGG | - | chr6_4:4658112-4658131 | None:intergenic | 45.0% | |
| CTTTGCACCTTCGAATGTTG+TGG | - | chr6_4:4658262-4658281 | None:intergenic | 45.0% | |
| GGTGCAGTTCAAGAACATGA+TGG | + | chr6_4:4658349-4658368 | Msa0972380:CDS | 45.0% | |
| ! | AGAACATGATGGAAGACGTG+AGG | + | chr6_4:4658360-4658379 | Msa0972380:CDS | 45.0% |
| ACGTGAGGCTATGGTGATAA+AGG | + | chr6_4:4658375-4658394 | Msa0972380:CDS | 45.0% | |
| ATAGGGGTAACAACCATTGC+AGG | + | chr6_4:4656827-4656846 | Msa0972380:intron | 45.0% | |
| ! | TCTTTTTCCTCCACCTGCAA+TGG | - | chr6_4:4656843-4656862 | None:intergenic | 45.0% |
| ATTGCAGGTGGAGGAAAAAG+AGG | + | chr6_4:4656842-4656861 | Msa0972380:CDS | 45.0% | |
| GGAGGAAAAAGAGGCCAATT+AGG | + | chr6_4:4656851-4656870 | Msa0972380:CDS | 45.0% | |
| GGAAAAAGAGGCCAATTAGG+AGG | + | chr6_4:4656854-4656873 | Msa0972380:CDS | 45.0% | |
| CATCAACATGGCCTCCTAAT+TGG | - | chr6_4:4656868-4656887 | None:intergenic | 45.0% | |
| CAATTAGGAGGCCATGTTGA+TGG | + | chr6_4:4656866-4656885 | Msa0972380:CDS | 45.0% | |
| ! | TAGTTGCTCTCTTTTGGTGG+TGG | + | chr6_4:4656943-4656962 | Msa0972380:CDS | 45.0% |
| !!! | TCTCTTTTGGTGGTGGATAG+AGG | + | chr6_4:4656950-4656969 | Msa0972380:CDS | 45.0% |
| !! | ATAGCTGCTCTTGTTTCTGC+TGG | - | chr6_4:4657240-4657259 | None:intergenic | 45.0% |
| !! | ATAGCTGCTCTTGTTTCTGC+TGG | + | chr6_4:4657240-4657259 | Msa0972380:CDS | 45.0% |
| CTTCTATACAATGACCCCTC+AGG | + | chr6_4:4657339-4657358 | Msa0972380:intron | 45.0% | |
| ! | TTTAGGGCCGACTAATCTGA+GGG | - | chr6_4:4657382-4657401 | None:intergenic | 45.0% |
| !!! | TTTTAGGGCCGACTAATCTG+AGG | - | chr6_4:4657383-4657402 | None:intergenic | 45.0% |
| GATTGATGCAACCTCAGAAG+CGG | + | chr6_4:4657512-4657531 | Msa0972380:intron | 45.0% | |
| AGAACTCAAGGTAGCGATCA+AGG | - | chr6_4:4657581-4657600 | None:intergenic | 45.0% | |
| ! | GGCCTTTGTTGTGATGCAAA+TGG | - | chr6_4:4657689-4657708 | None:intergenic | 45.0% |
| AGACGAACCACCTCCTAATA+TGG | + | chr6_4:4657979-4657998 | Msa0972380:CDS | 45.0% | |
| TGTCTATTTATCGGCACAGG+CGG | - | chr6_4:4658112-4658131 | None:intergenic | 45.0% | |
| CTTTGCACCTTCGAATGTTG+TGG | - | chr6_4:4658262-4658281 | None:intergenic | 45.0% | |
| GGTGCAGTTCAAGAACATGA+TGG | + | chr6_4:4658349-4658368 | Msa0972380:CDS | 45.0% | |
| ! | AGAACATGATGGAAGACGTG+AGG | + | chr6_4:4658360-4658379 | Msa0972380:CDS | 45.0% |
| ACGTGAGGCTATGGTGATAA+AGG | + | chr6_4:4658375-4658394 | Msa0972380:CDS | 45.0% | |
| GTAACAACCATTGCAGGTGG+AGG | + | chr6_4:4656833-4656852 | Msa0972380:CDS | 50.0% | |
| CCTCACTTGGACCATCAACA+TGG | - | chr6_4:4656880-4656899 | None:intergenic | 50.0% | |
| !! | CCATGTTGATGGTCCAAGTG+AGG | + | chr6_4:4656877-4656896 | Msa0972380:CDS | 50.0% |
| TTAGGGCCGACTAATCTGAG+GGG | - | chr6_4:4657381-4657400 | None:intergenic | 50.0% | |
| GGCCTCCTCCTAAATCAGTT+AGG | + | chr6_4:4657705-4657724 | Msa0972380:CDS | 50.0% | |
| ! | GGCCTAACTGATTTAGGAGG+AGG | - | chr6_4:4657710-4657729 | None:intergenic | 50.0% |
| ! | GGAGGCCTAACTGATTTAGG+AGG | - | chr6_4:4657713-4657732 | None:intergenic | 50.0% |
| TGATGGAAGACGTGAGGCTA+TGG | + | chr6_4:4658366-4658385 | Msa0972380:CDS | 50.0% | |
| GGCTATGGTGATAAAGGCTG+TGG | + | chr6_4:4658381-4658400 | Msa0972380:CDS | 50.0% | |
| GTAACAACCATTGCAGGTGG+AGG | + | chr6_4:4656833-4656852 | Msa0972380:CDS | 50.0% | |
| CCTCACTTGGACCATCAACA+TGG | - | chr6_4:4656880-4656899 | None:intergenic | 50.0% | |
| !! | CCATGTTGATGGTCCAAGTG+AGG | + | chr6_4:4656877-4656896 | Msa0972380:CDS | 50.0% |
| TTAGGGCCGACTAATCTGAG+GGG | - | chr6_4:4657381-4657400 | None:intergenic | 50.0% | |
| GGCCTCCTCCTAAATCAGTT+AGG | + | chr6_4:4657705-4657724 | Msa0972380:CDS | 50.0% | |
| ! | GGCCTAACTGATTTAGGAGG+AGG | - | chr6_4:4657710-4657729 | None:intergenic | 50.0% |
| ! | GGAGGCCTAACTGATTTAGG+AGG | - | chr6_4:4657713-4657732 | None:intergenic | 50.0% |
| TGATGGAAGACGTGAGGCTA+TGG | + | chr6_4:4658366-4658385 | Msa0972380:CDS | 50.0% | |
| GGCTATGGTGATAAAGGCTG+TGG | + | chr6_4:4658381-4658400 | Msa0972380:CDS | 50.0% | |
| GGGGTAACAACCATTGCAGG+TGG | + | chr6_4:4656830-4656849 | Msa0972380:intron | 55.0% | |
| CTATTTATCGGCACAGGCGG+AGG | - | chr6_4:4658109-4658128 | None:intergenic | 55.0% | |
| GGGGTAACAACCATTGCAGG+TGG | + | chr6_4:4656830-4656849 | Msa0972380:intron | 55.0% | |
| CTATTTATCGGCACAGGCGG+AGG | - | chr6_4:4658109-4658128 | None:intergenic | 55.0% | |
| TGACAACGCAGCCGCTTCTG+AGG | - | chr6_4:4657526-4657545 | None:intergenic | 60.0% | |
| TGACAACGCAGCCGCTTCTG+AGG | - | chr6_4:4657526-4657545 | None:intergenic | 60.0% | |
| GGAGGTGGTTCGTCTCCGTC+CGG | - | chr6_4:4657974-4657993 | None:intergenic | 65.0% | |
| GGAGGTGGTTCGTCTCCGTC+CGG | - | chr6_4:4657974-4657993 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 4656199 | 4658633 | 4656199 | ID=Msa0972380;Name=Msa0972380 |
| chr6_4 | mRNA | 4656199 | 4658633 | 4656199 | ID=Msa0972380-mRNA-1;Parent=Msa0972380;Name=Msa0972380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=24|1|1|1|1|1|4|153|395 |
| chr6_4 | exon | 4656199 | 4656250 | 4656199 | ID=Msa0972380-mRNA-1:exon:1976;Parent=Msa0972380-mRNA-1 |
| chr6_4 | exon | 4656831 | 4657073 | 4656831 | ID=Msa0972380-mRNA-1:exon:1977;Parent=Msa0972380-mRNA-1 |
| chr6_4 | exon | 4657238 | 4657326 | 4657238 | ID=Msa0972380-mRNA-1:exon:1978;Parent=Msa0972380-mRNA-1 |
| chr6_4 | exon | 4657653 | 4658633 | 4657653 | ID=Msa0972380-mRNA-1:exon:1979;Parent=Msa0972380-mRNA-1 |
| chr6_4 | five_prime_UTR | 4656199 | 4656222 | 4656199 | ID=Msa0972380-mRNA-1:five_prime_utr;Parent=Msa0972380-mRNA-1 |
| chr6_4 | CDS | 4656223 | 4656250 | 4656223 | ID=Msa0972380-mRNA-1:cds;Parent=Msa0972380-mRNA-1 |
| chr6_4 | CDS | 4656831 | 4657073 | 4656831 | ID=Msa0972380-mRNA-1:cds;Parent=Msa0972380-mRNA-1 |
| chr6_4 | CDS | 4657238 | 4657326 | 4657238 | ID=Msa0972380-mRNA-1:cds;Parent=Msa0972380-mRNA-1 |
| chr6_4 | CDS | 4657653 | 4658480 | 4657653 | ID=Msa0972380-mRNA-1:cds;Parent=Msa0972380-mRNA-1 |
| chr6_4 | three_prime_UTR | 4658481 | 4658633 | 4658481 | ID=Msa0972380-mRNA-1:three_prime_utr;Parent=Msa0972380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
