Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902940 | XP_013450839.1 | 96.986 | 564 | 12 | 2 | 1 | 561 | 1 | 562 | 0.0 | 1132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071860 | Msa0902940 | 0.802873 | 4.563815e-49 | -8.615850e-47 |
| Msa0175730 | Msa0902940 | 0.820204 | 7.760107e-53 | -8.615850e-47 |
| Msa0418970 | Msa0902940 | 0.803785 | 2.953593e-49 | -8.615850e-47 |
| Msa0465400 | Msa0902940 | 0.803812 | 2.915445e-49 | -8.615850e-47 |
| Msa0902940 | Msa0972380 | 0.931966 | 1.725462e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902940 | MtrunA17_Chr6g0451131 | 96.986 | 564 | 12 | 2 | 1 | 561 | 1 | 562 | 0.0 | 1132 |
| Msa0902940 | MtrunA17_Chr8g0364941 | 50.181 | 552 | 222 | 13 | 12 | 559 | 19 | 521 | 2.13e-175 | 506 |
| Msa0902940 | MtrunA17_Chr5g0413801 | 56.098 | 410 | 150 | 8 | 22 | 425 | 19 | 404 | 1.00e-150 | 444 |
| Msa0902940 | MtrunA17_Chr2g0315511 | 37.709 | 419 | 197 | 12 | 7 | 419 | 10 | 370 | 2.12e-76 | 250 |
| Msa0902940 | MtrunA17_Chr8g0359721 | 50.303 | 165 | 67 | 3 | 120 | 282 | 26 | 177 | 6.23e-48 | 164 |
| Msa0902940 | MtrunA17_Chr8g0364901 | 41.111 | 180 | 101 | 3 | 65 | 243 | 26 | 201 | 2.91e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902940 | AT1G70280.2 | 49.907 | 537 | 203 | 14 | 28 | 561 | 28 | 501 | 9.43e-148 | 435 |
| Msa0902940 | AT1G70280.1 | 49.900 | 499 | 187 | 13 | 66 | 561 | 1 | 439 | 4.03e-136 | 403 |
| Msa0902940 | AT1G23880.1 | 47.036 | 523 | 207 | 14 | 7 | 525 | 65 | 521 | 5.69e-136 | 406 |
| Msa0902940 | AT5G14890.1 | 53.985 | 389 | 142 | 12 | 19 | 399 | 21 | 380 | 4.16e-126 | 379 |
| Msa0902940 | AT5G14890.1 | 63.636 | 55 | 20 | 0 | 504 | 558 | 424 | 478 | 4.65e-15 | 78.2 |
| Msa0902940 | AT1G23880.2 | 48.052 | 462 | 173 | 12 | 66 | 525 | 1 | 397 | 1.75e-121 | 365 |
| Msa0902940 | AT3G14860.1 | 36.829 | 410 | 202 | 13 | 1 | 406 | 13 | 369 | 6.10e-74 | 244 |
| Msa0902940 | AT3G14860.2 | 36.275 | 408 | 208 | 13 | 1 | 406 | 13 | 370 | 1.76e-73 | 243 |
| Msa0902940 | AT1G23890.1 | 41.872 | 203 | 111 | 5 | 67 | 266 | 23 | 221 | 3.38e-40 | 147 |
| Msa0902940 | AT1G23890.2 | 41.872 | 203 | 111 | 5 | 67 | 266 | 23 | 221 | 3.56e-39 | 148 |
Find 104 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCAGATGGTGAATATT+TGG | 0.159273 | 6_2:+27653 | Msa0902940:CDS |
| ATATTATGGTGACTAAATTT+TGG | 0.159816 | 6_2:-31218 | None:intergenic |
| TTGTTTCTTCTCTTCTTAAA+TGG | 0.172191 | 6_2:+27276 | Msa0902940:CDS |
| TCATCTTCATTAGGGATTAA+AGG | 0.208414 | 6_2:-30534 | None:intergenic |
| AAAGGAGGCCTAACTGATTT+AGG | 0.228168 | 6_2:-30516 | None:intergenic |
| CATTGCAGACACATTGAATA+TGG | 0.250525 | 6_2:+29056 | Msa0902940:CDS |
| CTACCTGGTACTTTAACTTT+TGG | 0.252864 | 6_2:-27320 | None:intergenic |
| CTTTCTGTTTGTCTATTTAT+CGG | 0.265414 | 6_2:-30921 | None:intergenic |
| TTAACCTAGGTCGAATATTA+TGG | 0.266682 | 6_2:-31232 | None:intergenic |
| GAAGATCCAGCAAGCAGTTT+TGG | 0.271033 | 6_2:-28940 | None:intergenic |
| TCATCAACTGTAAGCCCTTT+AGG | 0.275718 | 6_2:-29018 | None:intergenic |
| CATCAACATGGCCTCCTAAT+TGG | 0.286978 | 6_2:-29719 | None:intergenic |
| TAGAAGTAGTTGCTCTCTTT+TGG | 0.288214 | 6_2:+29791 | Msa0902940:CDS |
| CTTCTCTTCTTAAATGGATA+TGG | 0.289356 | 6_2:+27282 | Msa0902940:CDS |
| AGATGGTGAATATTTGGTTT+TGG | 0.301551 | 6_2:+27659 | Msa0902940:CDS |
| TCTCAAATTCATCTTCATTA+GGG | 0.302840 | 6_2:-30542 | None:intergenic |
| AGACGAACCACCTCCTAATA+TGG | 0.307802 | 6_2:+30782 | Msa0902940:CDS |
| TTCTCAAATTCATCTTCATT+AGG | 0.311852 | 6_2:-30543 | None:intergenic |
| GGATCTTCTGACGGGTATAT+TGG | 0.316751 | 6_2:+28955 | Msa0902940:CDS |
| AATGTGGAAACAATATTTGA+TGG | 0.330878 | 6_2:+27594 | Msa0902940:CDS |
| TTCTTGCATTGGCCATGAAT+TGG | 0.333315 | 6_2:-30739 | None:intergenic |
| AGGATTCAAGGGCACATATA+AGG | 0.336115 | 6_2:+30454 | Msa0902940:intron |
| GTTGTTGATGTTGATGTTGT+TGG | 0.343286 | 6_2:-30689 | None:intergenic |
| GTGATAAAGGCTGTGGATTA+TGG | 0.344089 | 6_2:+31191 | Msa0902940:CDS |
| GAAGGCTTCTTTGTTTCTCT+TGG | 0.356177 | 6_2:+30573 | Msa0902940:CDS |
| TCCAATTCCTTGTTTGTGTA+AGG | 0.363813 | 6_2:-30837 | None:intergenic |
| ATAGCTGCTCTTGTTTCTGC+TGG | 0.364729 | 6_2:+30043 | Msa0902940:CDS |
| TTCATCACTGATCTTTCTAA+TGG | 0.373047 | 6_2:-29079 | None:intergenic |
| ATAGACAACATTCCAATTCA+TGG | 0.380120 | 6_2:+30727 | Msa0902940:CDS |
| ACGTGAGGCTATGGTGATAA+AGG | 0.389534 | 6_2:+31178 | Msa0902940:CDS |
| TCCTTACACAAACAAGGAAT+TGG | 0.395649 | 6_2:+30836 | Msa0902940:CDS |
| AGTGAACTCAAGTTCATCAA+TGG | 0.414203 | 6_2:+30605 | Msa0902940:CDS |
| ATATGTTAGCATTACTTAAG+AGG | 0.422314 | 6_2:+30077 | Msa0902940:CDS |
| ATCACAAAACTTTCTTGCAT+TGG | 0.425594 | 6_2:-30750 | None:intergenic |
| AAAACCAAATATTCACCATC+TGG | 0.435104 | 6_2:-27657 | None:intergenic |
| TGACATGCAGAAATTGTTAC+TGG | 0.436787 | 6_2:+27239 | Msa0902940:intron |
| AGCAAACCAAAACTGCTTGC+TGG | 0.444843 | 6_2:+28934 | Msa0902940:CDS |
| GAAAACTTTGCATCCTCACT+TGG | 0.448935 | 6_2:-29744 | None:intergenic |
| AAACAAGGAATTGGAAATGT+TGG | 0.451518 | 6_2:+30845 | Msa0902940:CDS |
| ATCTTTAAGTCTCTTAACTT+AGG | 0.455891 | 6_2:+27039 | Msa0902940:five_prime_UTR |
| GGGTATATTGGACACATAGA+TGG | 0.456632 | 6_2:+28967 | Msa0902940:CDS |
| GAGACAAATGAGATTGTGTT+TGG | 0.461655 | 6_2:+31131 | Msa0902940:CDS |
| CGACCTAGGTTAAATTATGT+TGG | 0.467022 | 6_2:+31242 | Msa0902940:CDS |
| CAATTAGGAGGCCATGTTGA+TGG | 0.476101 | 6_2:+29720 | Msa0902940:CDS |
| ATAGGGGTAACAACCATTGC+AGG | 0.479173 | 6_2:+29681 | Msa0902940:intron |
| GTGAACTCAAGTTCATCAAT+GGG | 0.484957 | 6_2:+30606 | Msa0902940:CDS |
| TGGTTCAGTCTTGCATCTCT+AGG | 0.485332 | 6_2:-28994 | None:intergenic |
| ATATTTGATGGACGTAAGCT+TGG | 0.486395 | 6_2:+27606 | Msa0902940:CDS |
| AGGGCACATATAAGGACAAA+AGG | 0.486828 | 6_2:+30462 | Msa0902940:CDS |
| TATGACAATAGTTTCCCCTT+AGG | 0.487484 | 6_2:+29906 | Msa0902940:CDS |
| TTTGTTTCCATATTAGGAGG+TGG | 0.490274 | 6_2:-30789 | None:intergenic |
| GTTTGTCTATTTATCGGCAC+AGG | 0.491919 | 6_2:-30915 | None:intergenic |
| CTATTTATCGGCACAGGCGG+AGG | 0.494553 | 6_2:-30909 | None:intergenic |
| GGAAATTTACATCTTGACAT+TGG | 0.502050 | 6_2:-27717 | None:intergenic |
| TGCTCACACATTATACTACA+TGG | 0.512913 | 6_2:-26996 | None:intergenic |
| CAAGACTGAACCATCCTAAA+GGG | 0.514153 | 6_2:+29004 | Msa0902940:CDS |
| TTTCACTTACTTGCAGGTGG+TGG | 0.525688 | 6_2:-27147 | None:intergenic |
| GGTGGTGGTGTAGCTGAAGT+TGG | 0.538593 | 6_2:-27132 | None:intergenic |
| GCAAGACTGAACCATCCTAA+AGG | 0.538732 | 6_2:+29003 | Msa0902940:CDS |
| GGCCTAACTGATTTAGGAGG+AGG | 0.539849 | 6_2:-30510 | None:intergenic |
| GGAGGTGGTTCGTCTCCGTC+CGG | 0.539939 | 6_2:-30774 | None:intergenic |
| GGCCTCCTCCTAAATCAGTT+AGG | 0.542090 | 6_2:+30508 | Msa0902940:CDS |
| ATTAGAAAGATCAGTGATGA+AGG | 0.542470 | 6_2:+29081 | Msa0902940:CDS |
| GAATTTGAGAAACATGATGA+AGG | 0.545619 | 6_2:+30555 | Msa0902940:CDS |
| CTGCTTGCTGGATCTTCTGA+CGG | 0.546208 | 6_2:+28946 | Msa0902940:CDS |
| CTTTGCACCTTCGAATGTTG+TGG | 0.557658 | 6_2:-31062 | None:intergenic |
| TTGTTTCACTTACTTGCAGG+TGG | 0.562484 | 6_2:-27150 | None:intergenic |
| GGCTATGGTGATAAAGGCTG+TGG | 0.569335 | 6_2:+31184 | Msa0902940:CDS |
| TGGTATTGATGATATGAAAG+TGG | 0.571733 | 6_2:-30669 | None:intergenic |
| TTCTTCTCATAGTAACTCGA+TGG | 0.573141 | 6_2:-31104 | None:intergenic |
| GGCCTTTGTTGTGATGCAAA+TGG | 0.574250 | 6_2:-30489 | None:intergenic |
| TGCTTGCTGGATCTTCTGAC+GGG | 0.575537 | 6_2:+28947 | Msa0902940:CDS |
| CAACTGTAAGCCCTTTAGGA+TGG | 0.576300 | 6_2:-29014 | None:intergenic |
| GTAACAACCATTGCAGGTGG+AGG | 0.576648 | 6_2:+29687 | Msa0902940:CDS |
| CACACATTATACTACATGGA+TGG | 0.578621 | 6_2:-26992 | None:intergenic |
| GTTAGCATTACTTAAGAGGA+GGG | 0.579193 | 6_2:+30081 | Msa0902940:CDS |
| TGATGGAAGACGTGAGGCTA+TGG | 0.581508 | 6_2:+31169 | Msa0902940:CDS |
| TGTTAGCATTACTTAAGAGG+AGG | 0.588173 | 6_2:+30080 | Msa0902940:CDS |
| TGTCTATTTATCGGCACAGG+CGG | 0.589980 | 6_2:-30912 | None:intergenic |
| GGTGCAGTTCAAGAACATGA+TGG | 0.596214 | 6_2:+31152 | Msa0902940:CDS |
| AAACCAAAAGTTAAAGTACC+AGG | 0.610352 | 6_2:+27317 | Msa0902940:CDS |
| GGAGATATTTCAATTGAGTG+TGG | 0.612555 | 6_2:-27636 | None:intergenic |
| CACCATTTGCATCACAACAA+AGG | 0.612868 | 6_2:+30487 | Msa0902940:CDS |
| GGAGGCCTAACTGATTTAGG+AGG | 0.614176 | 6_2:-30513 | None:intergenic |
| CCTCACTTGGACCATCAACA+TGG | 0.615549 | 6_2:-29731 | None:intergenic |
| AGTGCAACATAGTCGATCCA+TGG | 0.621478 | 6_2:+27551 | Msa0902940:intron |
| TCAATTGAAATATCTCCAGA+TGG | 0.621497 | 6_2:+27642 | Msa0902940:CDS |
| GTCACCATAATATTCGACCT+AGG | 0.624366 | 6_2:+31228 | Msa0902940:CDS |
| ATTACTTAAGAGGAGGGTGA+CGG | 0.627394 | 6_2:+30087 | Msa0902940:CDS |
| TCTTAAATGAGAAATTGAGA+AGG | 0.630148 | 6_2:+31380 | Msa0902940:three_prime_UTR |
| TAACCAACATAATTTAACCT+AGG | 0.630944 | 6_2:-31245 | None:intergenic |
| ATATTGGACACATAGATGGA+AGG | 0.643121 | 6_2:+28971 | Msa0902940:CDS |
| GGGGTAACAACCATTGCAGG+TGG | 0.643595 | 6_2:+29684 | Msa0902940:intron |
| TCTTCATTAGGGATTAAAGG+AGG | 0.645407 | 6_2:-30531 | None:intergenic |
| AACATATCCTTACACAAACA+AGG | 0.645525 | 6_2:+30830 | Msa0902940:CDS |
| TCAACAACCACAACATTCGA+AGG | 0.656042 | 6_2:+31055 | Msa0902940:CDS |
| ATTTGAGAGTGGTTACAATG+TGG | 0.666565 | 6_2:+27578 | Msa0902940:CDS |
| TCCATGGTGAAATTTGAGAG+TGG | 0.666837 | 6_2:+27567 | Msa0902940:CDS |
| TAGGAAAAGAAACAATGACT+AGG | 0.672622 | 6_2:+27058 | Msa0902940:exon |
| ACCACTCTCAAATTTCACCA+TGG | 0.677537 | 6_2:-27568 | None:intergenic |
| CCATGTTGATGGTCCAAGTG+AGG | 0.680475 | 6_2:+29731 | Msa0902940:CDS |
| AGAACATGATGGAAGACGTG+AGG | 0.685866 | 6_2:+31163 | Msa0902940:CDS |
| TGGATCATATCATACCTAAG+GGG | 0.695856 | 6_2:-29920 | None:intergenic |
| GGGCTTACAGTTGATGACAG+TGG | 0.707025 | 6_2:+29024 | Msa0902940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAATGTATATATTATA+AGG | - | chr6_2:27798-27817 | None:intergenic | 10.0% |
| !! | AAAATATATAAAGTATAACA+TGG | + | chr6_2:28276-28295 | Msa0902940:intron | 10.0% |
| !! | AATATACTAAAAATAACTTA+TGG | - | chr6_2:29267-29286 | None:intergenic | 10.0% |
| !!! | AAACAAGATTTTAAAATTTT+AGG | - | chr6_2:30427-30446 | None:intergenic | 10.0% |
| !!! | AAGTTTGATATATCTTTTTT+AGG | + | chr6_2:27756-27775 | Msa0902940:intron | 15.0% |
| !!! | GTTAAATAAATTTTTAGTCT+TGG | - | chr6_2:27945-27964 | None:intergenic | 15.0% |
| !! | AAATTCTTTAGTATTAATTG+TGG | + | chr6_2:28042-28061 | Msa0902940:intron | 15.0% |
| !!! | ATTTTTTAATTTGTGACTAA+AGG | - | chr6_2:28261-28280 | None:intergenic | 15.0% |
| !! | TCAAAAGAAAAATAAAGAAA+AGG | + | chr6_2:28358-28377 | Msa0902940:intron | 15.0% |
| !! | TTAGTTAAAGATATATTGTT+TGG | + | chr6_2:28632-28651 | Msa0902940:intron | 15.0% |
| !! | TAGTTAAAGATATATTGTTT+GGG | + | chr6_2:28633-28652 | Msa0902940:intron | 15.0% |
| !! | TTTCTTTATTGATATATGAT+TGG | + | chr6_2:28790-28809 | Msa0902940:intron | 15.0% |
| !!! | AATAAGTTGAAAATATCTTA+TGG | - | chr6_2:29461-29480 | None:intergenic | 15.0% |
| !!! | TTGCTTATCATTTTATATAT+AGG | + | chr6_2:29975-29994 | Msa0902940:intron | 15.0% |
| !!! | TGCTTATCATTTTATATATA+GGG | + | chr6_2:29976-29995 | Msa0902940:intron | 15.0% |
| !! | TGAAAAAATAATAACATTAC+AGG | + | chr6_2:30019-30038 | Msa0902940:intron | 15.0% |
| !!! | TACTATATATTTTGAAAACT+CGG | - | chr6_2:30216-30235 | None:intergenic | 15.0% |
| !!! | AGTTTTCAAAATATATAGTA+AGG | + | chr6_2:30216-30235 | Msa0902940:intron | 15.0% |
| !!! | GTTTTCAAAATATATAGTAA+GGG | + | chr6_2:30217-30236 | Msa0902940:intron | 15.0% |
| !!! | TTTTGTTTTATATTTTCTAC+TGG | + | chr6_2:31336-31355 | Msa0902940:three_prime_UTR | 15.0% |
| !! | AAATATTCATAAGAGTTTAG+AGG | - | chr6_2:27176-27195 | None:intergenic | 20.0% |
| !!! | AAGTGACGATAAATTTTAAT+AGG | + | chr6_2:27890-27909 | Msa0902940:intron | 20.0% |
| !!! | AGTGACGATAAATTTTAATA+GGG | + | chr6_2:27891-27910 | Msa0902940:intron | 20.0% |
| !! | AGAATGGAAATTTGAATAAA+AGG | - | chr6_2:27972-27991 | None:intergenic | 20.0% |
| !! | TACCAAAAAGAAAAGTAAAA+GGG | - | chr6_2:28440-28459 | None:intergenic | 20.0% |
| !!! | ATTTATCTTTGAGTTTCTTA+AGG | + | chr6_2:28511-28530 | Msa0902940:intron | 20.0% |
| !! | CATATATCAATAAAGAAACT+AGG | - | chr6_2:28788-28807 | None:intergenic | 20.0% |
| !!! | ATAATGGAAAATTTTCTAGA+GGG | - | chr6_2:28866-28885 | None:intergenic | 20.0% |
| !! | CAAACAAAAAAGAAACATAA+TGG | - | chr6_2:28882-28901 | None:intergenic | 20.0% |
| !!! | CATTATGTTTCTTTTTTGTT+TGG | + | chr6_2:28880-28899 | Msa0902940:intron | 20.0% |
| !!! | GAATTTACCAAATTGATTTA+TGG | + | chr6_2:29150-29169 | Msa0902940:intron | 20.0% |
| !! | AAATAGACCATAAATCAATT+TGG | - | chr6_2:29160-29179 | None:intergenic | 20.0% |
| !!! | AAATTGATTTATGGTCTATT+TGG | + | chr6_2:29159-29178 | Msa0902940:intron | 20.0% |
| !!! | TGTTTAATTAAAGCGTTTAT+CGG | + | chr6_2:29592-29611 | Msa0902940:intron | 20.0% |
| !!! | TTTTGAAAGGTTATAGTTTA+GGG | - | chr6_2:29625-29644 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGGTTATAGTTT+AGG | - | chr6_2:29626-29645 | None:intergenic | 20.0% |
| !!! | AGGGTTTTTTTATTTTTGAA+AGG | - | chr6_2:29638-29657 | None:intergenic | 20.0% |
| !! | GCAAATGAAAATAAATACTA+AGG | - | chr6_2:29959-29978 | None:intergenic | 20.0% |
| !!! | GCTTATCATTTTATATATAG+GGG | + | chr6_2:29977-29996 | Msa0902940:intron | 20.0% |
| !!! | TATATAGTAAGGGTTTTAAA+TGG | + | chr6_2:30227-30246 | Msa0902940:intron | 20.0% |
| !!! | TAAAATCTTGTTTCATTTTC+AGG | + | chr6_2:30434-30453 | Msa0902940:intron | 20.0% |
| !!! | ATATTATGGTGACTAAATTT+TGG | - | chr6_2:31221-31240 | None:intergenic | 20.0% |
| ! | ATCTTTAAGTCTCTTAACTT+AGG | + | chr6_2:27039-27058 | Msa0902940:five_prime_UTR | 25.0% |
| !!! | TTTGCTTTTATTGTTCTACT+TGG | + | chr6_2:27099-27118 | Msa0902940:CDS | 25.0% |
| !! | TTGTTTCTTCTCTTCTTAAA+TGG | + | chr6_2:27276-27295 | Msa0902940:CDS | 25.0% |
| ! | CGAGAAAATTATAAACTCAA+TGG | - | chr6_2:27478-27497 | None:intergenic | 25.0% |
| ! | AATGTGGAAACAATATTTGA+TGG | + | chr6_2:27594-27613 | Msa0902940:CDS | 25.0% |
| ! | AACTTAGAAAATTTGAGCAA+AGG | - | chr6_2:27741-27760 | None:intergenic | 25.0% |
| ! | TCTTGCATATTAATCTCATA+TGG | + | chr6_2:27832-27851 | Msa0902940:intron | 25.0% |
| !! | AATGATCTCTTATGCATTTT+AGG | + | chr6_2:27862-27881 | Msa0902940:intron | 25.0% |
| !! | ATGATCTCTTATGCATTTTA+GGG | + | chr6_2:27863-27882 | Msa0902940:intron | 25.0% |
| !!! | GTGACGATAAATTTTAATAG+GGG | + | chr6_2:27892-27911 | Msa0902940:intron | 25.0% |
| !!! | TGACGATAAATTTTAATAGG+GGG | + | chr6_2:27893-27912 | Msa0902940:intron | 25.0% |
| ! | GGAAATTTGAATAAAAGGTA+GGG | - | chr6_2:27967-27986 | None:intergenic | 25.0% |
| ! | TGGAAATTTGAATAAAAGGT+AGG | - | chr6_2:27968-27987 | None:intergenic | 25.0% |
| ! | AAATAGCAACAACAAAAGAA+TGG | - | chr6_2:27988-28007 | None:intergenic | 25.0% |
| ! | GAAACATCAAACATTCTTAA+AGG | - | chr6_2:28122-28141 | None:intergenic | 25.0% |
| !! | TTAAACTTTTGTTAAGCTCA+AGG | + | chr6_2:28211-28230 | Msa0902940:intron | 25.0% |
| ! | GAATGTTGTAACTTATAAAG+TGG | - | chr6_2:28239-28258 | None:intergenic | 25.0% |
| ! | TATAACATGGAATATCTACA+TGG | + | chr6_2:28289-28308 | Msa0902940:intron | 25.0% |
| !!! | TTCTTTTTTGCAATCATTAG+AGG | + | chr6_2:28319-28338 | Msa0902940:intron | 25.0% |
| !!! | ATCCCTTTTACTTTTCTTTT+TGG | + | chr6_2:28435-28454 | Msa0902940:intron | 25.0% |
| ! | GTACCAAAAAGAAAAGTAAA+AGG | - | chr6_2:28441-28460 | None:intergenic | 25.0% |
| ! | TTGAGTTTCTTAAGGAAATT+AGG | + | chr6_2:28519-28538 | Msa0902940:intron | 25.0% |
| !! | ACGTCTTATTAGTTGAATAT+CGG | + | chr6_2:28707-28726 | Msa0902940:intron | 25.0% |
| !! | AAACTAGGAATATCATTTTG+AGG | - | chr6_2:28773-28792 | None:intergenic | 25.0% |
| !!! | CATAATGGAAAATTTTCTAG+AGG | - | chr6_2:28867-28886 | None:intergenic | 25.0% |
| !! | CCATAAACTGTTTTCTTTTT+TGG | - | chr6_2:29340-29359 | None:intergenic | 25.0% |
| ! | CCAAAAAAGAAAACAGTTTA+TGG | + | chr6_2:29337-29356 | Msa0902940:intron | 25.0% |
| !!! | AACTTATTTTCATGAGCTTT+TGG | + | chr6_2:29473-29492 | Msa0902940:intron | 25.0% |
| !!! | ACTTATTTTCATGAGCTTTT+GGG | + | chr6_2:29474-29493 | Msa0902940:intron | 25.0% |
| ! | AAAGCATGTCTTATAGTTTA+GGG | - | chr6_2:29657-29676 | None:intergenic | 25.0% |
| !! | AAAAGCATGTCTTATAGTTT+AGG | - | chr6_2:29658-29677 | None:intergenic | 25.0% |
| !!! | ATAAGACATGCTTTTTGTAT+AGG | + | chr6_2:29663-29682 | Msa0902940:intron | 25.0% |
| !!! | TAAGACATGCTTTTTGTATA+GGG | + | chr6_2:29664-29683 | Msa0902940:intron | 25.0% |
| ! | ACTAAGGATAAGATTAAATG+TGG | - | chr6_2:29943-29962 | None:intergenic | 25.0% |
| ! | ATATGTTAGCATTACTTAAG+AGG | + | chr6_2:30077-30096 | Msa0902940:CDS | 25.0% |
| ! | CATAAAAAATTGTTATGTCG+CGG | + | chr6_2:30358-30377 | Msa0902940:intron | 25.0% |
| !! | TATAACATGTTTAGAACTCA+AGG | - | chr6_2:30396-30415 | None:intergenic | 25.0% |
| ! | TCTCAAATTCATCTTCATTA+GGG | - | chr6_2:30545-30564 | None:intergenic | 25.0% |
| ! | TTCTCAAATTCATCTTCATT+AGG | - | chr6_2:30546-30565 | None:intergenic | 25.0% |
| !!! | ATCTTTTTGAGCTTATTCTT+AGG | + | chr6_2:30633-30652 | Msa0902940:CDS | 25.0% |
| !! | ATATGAAAGTGGTTTTCTTT+TGG | - | chr6_2:30661-30680 | None:intergenic | 25.0% |
| ! | TTGGAAAAAACAAGAGATAA+CGG | + | chr6_2:30864-30883 | Msa0902940:CDS | 25.0% |
| ! | CTTTCTGTTTGTCTATTTAT+CGG | - | chr6_2:30924-30943 | None:intergenic | 25.0% |
| ! | TAACCAACATAATTTAACCT+AGG | - | chr6_2:31248-31267 | None:intergenic | 25.0% |
| ! | TCTTAAATGAGAAATTGAGA+AGG | + | chr6_2:31380-31399 | Msa0902940:three_prime_UTR | 25.0% |
| TAGGAAAAGAAACAATGACT+AGG | + | chr6_2:27058-27077 | Msa0902940:exon | 30.0% | |
| CTTCTCTTCTTAAATGGATA+TGG | + | chr6_2:27282-27301 | Msa0902940:CDS | 30.0% | |
| !! | TGGTACTTTAACTTTTGGTT+TGG | - | chr6_2:27318-27337 | None:intergenic | 30.0% |
| ! | AAACCAAAAGTTAAAGTACC+AGG | + | chr6_2:27317-27336 | Msa0902940:CDS | 30.0% |
| AATTTAGTGAAATCTGTCAC+TGG | - | chr6_2:27425-27444 | None:intergenic | 30.0% | |
| TCAATTGAAATATCTCCAGA+TGG | + | chr6_2:27642-27661 | Msa0902940:CDS | 30.0% | |
| AAAACCAAATATTCACCATC+TGG | - | chr6_2:27660-27679 | None:intergenic | 30.0% | |
| !! | AGATGGTGAATATTTGGTTT+TGG | + | chr6_2:27659-27678 | Msa0902940:CDS | 30.0% |
| GGAAATTTACATCTTGACAT+TGG | - | chr6_2:27720-27739 | None:intergenic | 30.0% | |
| !! | GACGATAAATTTTAATAGGG+GGG | + | chr6_2:27894-27913 | Msa0902940:intron | 30.0% |
| !! | ACGATAAATTTTAATAGGGG+GGG | + | chr6_2:27895-27914 | Msa0902940:intron | 30.0% |
| !!! | CTTTTGTTGTTGCTATTTGT+TGG | + | chr6_2:27990-28009 | Msa0902940:intron | 30.0% |
| ! | ACACACTTGAATTTTGAATC+TGG | - | chr6_2:28099-28118 | None:intergenic | 30.0% |
| AGTAGAATCAAAAGATTTCC+CGG | - | chr6_2:28179-28198 | None:intergenic | 30.0% | |
| AAAGTAAAAGGGATCATAGT+GGG | - | chr6_2:28429-28448 | None:intergenic | 30.0% | |
| AAAAGTAAAAGGGATCATAG+TGG | - | chr6_2:28430-28449 | None:intergenic | 30.0% | |
| GGAAATTAGGAAATATCACA+TGG | + | chr6_2:28532-28551 | Msa0902940:intron | 30.0% | |
| GCTAAATGGTTAAACTCAAA+TGG | + | chr6_2:28599-28618 | Msa0902940:intron | 30.0% | |
| AATAAGACGTAAGTAAAGTC+TGG | - | chr6_2:28697-28716 | None:intergenic | 30.0% | |
| GTGAATATCACTTTCGAAAA+TGG | - | chr6_2:28744-28763 | None:intergenic | 30.0% | |
| !!! | TAGGAATATCATTTTGAGGT+TGG | - | chr6_2:28769-28788 | None:intergenic | 30.0% |
| TTCATCACTGATCTTTCTAA+TGG | - | chr6_2:29082-29101 | None:intergenic | 30.0% | |
| ATTAGAAAGATCAGTGATGA+AGG | + | chr6_2:29081-29100 | Msa0902940:CDS | 30.0% | |
| ! | TAAACACTTGAGAGACTTTT+TGG | + | chr6_2:29211-29230 | Msa0902940:intron | 30.0% |
| ATAACTTATGGACATGTCAT+CGG | - | chr6_2:29255-29274 | None:intergenic | 30.0% | |
| !! | CAGCTTTTGAAAACAGTTTA+TGG | + | chr6_2:29305-29324 | Msa0902940:intron | 30.0% |
| !! | AAGACATGCTTTTTGTATAG+GGG | + | chr6_2:29665-29684 | Msa0902940:intron | 30.0% |
| ! | AAACTCGGTATCCAATTTTA+GGG | - | chr6_2:30201-30220 | None:intergenic | 30.0% |
| ! | AAAACTCGGTATCCAATTTT+AGG | - | chr6_2:30202-30221 | None:intergenic | 30.0% |
| !!! | ATAGTAAGGGTTTTAAATGG+TGG | + | chr6_2:30230-30249 | Msa0902940:intron | 30.0% |
| !! | TGTTTCATTTTCAGGATTCA+AGG | + | chr6_2:30442-30461 | Msa0902940:intron | 30.0% |
| !! | GTTTCATTTTCAGGATTCAA+GGG | + | chr6_2:30443-30462 | Msa0902940:intron | 30.0% |
| TCATCTTCATTAGGGATTAA+AGG | - | chr6_2:30537-30556 | None:intergenic | 30.0% | |
| GAATTTGAGAAACATGATGA+AGG | + | chr6_2:30555-30574 | Msa0902940:CDS | 30.0% | |
| !! | TGGTATTGATGATATGAAAG+TGG | - | chr6_2:30672-30691 | None:intergenic | 30.0% |
| ATAGACAACATTCCAATTCA+TGG | + | chr6_2:30727-30746 | Msa0902940:CDS | 30.0% | |
| ATCACAAAACTTTCTTGCAT+TGG | - | chr6_2:30753-30772 | None:intergenic | 30.0% | |
| !! | GTTTTTGTTTCCATATTAGG+AGG | - | chr6_2:30795-30814 | None:intergenic | 30.0% |
| !! | GGTGTTTTTGTTTCCATATT+AGG | - | chr6_2:30798-30817 | None:intergenic | 30.0% |
| AAACAAAAACACCTTCACAA+AGG | + | chr6_2:30805-30824 | Msa0902940:CDS | 30.0% | |
| AACATATCCTTACACAAACA+AGG | + | chr6_2:30830-30849 | Msa0902940:CDS | 30.0% | |
| AAACAAGGAATTGGAAATGT+TGG | + | chr6_2:30845-30864 | Msa0902940:CDS | 30.0% | |
| TTAACCTAGGTCGAATATTA+TGG | - | chr6_2:31235-31254 | None:intergenic | 30.0% | |
| CACACATTATACTACATGGA+TGG | - | chr6_2:26995-27014 | None:intergenic | 35.0% | |
| TGCTCACACATTATACTACA+TGG | - | chr6_2:26999-27018 | None:intergenic | 35.0% | |
| TGACATGCAGAAATTGTTAC+TGG | + | chr6_2:27239-27258 | Msa0902940:intron | 35.0% | |
| !! | CTACCTGGTACTTTAACTTT+TGG | - | chr6_2:27323-27342 | None:intergenic | 35.0% |
| TCTACTAGTAAATCTCTACC+TGG | - | chr6_2:27338-27357 | None:intergenic | 35.0% | |
| ATTTGAGAGTGGTTACAATG+TGG | + | chr6_2:27578-27597 | Msa0902940:CDS | 35.0% | |
| ! | ATATTTGATGGACGTAAGCT+TGG | + | chr6_2:27606-27625 | Msa0902940:CDS | 35.0% |
| GGAGATATTTCAATTGAGTG+TGG | - | chr6_2:27639-27658 | None:intergenic | 35.0% | |
| ATCTCCAGATGGTGAATATT+TGG | + | chr6_2:27653-27672 | Msa0902940:CDS | 35.0% | |
| GAAGCAAAGTCATATGTACA+AGG | - | chr6_2:28152-28171 | None:intergenic | 35.0% | |
| AAGTAAAAGGGATCATAGTG+GGG | - | chr6_2:28428-28447 | None:intergenic | 35.0% | |
| ! | TTTTGGTACTTCTTGCTACA+TGG | + | chr6_2:28452-28471 | Msa0902940:intron | 35.0% |
| AGGAAATATCACATGGAGAT+TGG | + | chr6_2:28539-28558 | Msa0902940:intron | 35.0% | |
| CATAGAGTGAAGACAAAATC+TGG | + | chr6_2:28577-28596 | Msa0902940:intron | 35.0% | |
| GAAGACAAAATCTGGCTAAA+TGG | + | chr6_2:28585-28604 | Msa0902940:intron | 35.0% | |
| TAGTTGAATATCGGATTACC+AGG | + | chr6_2:28716-28735 | Msa0902940:intron | 35.0% | |
| ATATTGGACACATAGATGGA+AGG | + | chr6_2:28971-28990 | Msa0902940:CDS | 35.0% | |
| CATTGCAGACACATTGAATA+TGG | + | chr6_2:29056-29075 | Msa0902940:CDS | 35.0% | |
| CATTGTGAAACAGATTGAGA+TGG | - | chr6_2:29126-29145 | None:intergenic | 35.0% | |
| ! | ACTGTTTTCAAAAGCTGTCT+TGG | - | chr6_2:29302-29321 | None:intergenic | 35.0% |
| ! | TAGAAGTAGTTGCTCTCTTT+TGG | + | chr6_2:29791-29810 | Msa0902940:CDS | 35.0% |
| TATGACAATAGTTTCCCCTT+AGG | + | chr6_2:29906-29925 | Msa0902940:CDS | 35.0% | |
| TGGATCATATCATACCTAAG+GGG | - | chr6_2:29923-29942 | None:intergenic | 35.0% | |
| GTGGATCATATCATACCTAA+GGG | - | chr6_2:29924-29943 | None:intergenic | 35.0% | |
| TGTGGATCATATCATACCTA+AGG | - | chr6_2:29925-29944 | None:intergenic | 35.0% | |
| !!! | CTTGTTTCTGCTGGATTTTT+TGG | + | chr6_2:30052-30071 | Msa0902940:CDS | 35.0% |
| TGTTAGCATTACTTAAGAGG+AGG | + | chr6_2:30080-30099 | Msa0902940:CDS | 35.0% | |
| GTTAGCATTACTTAAGAGGA+GGG | + | chr6_2:30081-30100 | Msa0902940:CDS | 35.0% | |
| AAAAAATTTGTCACCCTGAG+GGG | - | chr6_2:30159-30178 | None:intergenic | 35.0% | |
| CAAAAAATTTGTCACCCTGA+GGG | - | chr6_2:30160-30179 | None:intergenic | 35.0% | |
| TCAAAAAATTTGTCACCCTG+AGG | - | chr6_2:30161-30180 | None:intergenic | 35.0% | |
| TTAAATGGTGGTCATGGTAA+CGG | + | chr6_2:30242-30261 | Msa0902940:intron | 35.0% | |
| TCTTCATTAGGGATTAAAGG+AGG | - | chr6_2:30534-30553 | None:intergenic | 35.0% | |
| AGTGAACTCAAGTTCATCAA+TGG | + | chr6_2:30605-30624 | Msa0902940:CDS | 35.0% | |
| GTGAACTCAAGTTCATCAAT+GGG | + | chr6_2:30606-30625 | Msa0902940:CDS | 35.0% | |
| GTTGTTGATGTTGATGTTGT+TGG | - | chr6_2:30692-30711 | None:intergenic | 35.0% | |
| !! | GCAAGAAAGTTTTGTGATTC+CGG | + | chr6_2:30755-30774 | Msa0902940:CDS | 35.0% |
| TTTGTTTCCATATTAGGAGG+TGG | - | chr6_2:30792-30811 | None:intergenic | 35.0% | |
| ! | GGATATGTTTTCCTTTGTGA+AGG | - | chr6_2:30819-30838 | None:intergenic | 35.0% |
| TCCTTACACAAACAAGGAAT+TGG | + | chr6_2:30836-30855 | Msa0902940:CDS | 35.0% | |
| ! | TCCAATTCCTTGTTTGTGTA+AGG | - | chr6_2:30840-30859 | None:intergenic | 35.0% |
| TTCTTCTCATAGTAACTCGA+TGG | - | chr6_2:31107-31126 | None:intergenic | 35.0% | |
| GAGACAAATGAGATTGTGTT+TGG | + | chr6_2:31131-31150 | Msa0902940:CDS | 35.0% | |
| CGACCTAGGTTAAATTATGT+TGG | + | chr6_2:31242-31261 | Msa0902940:CDS | 35.0% | |
| TTGTTTCACTTACTTGCAGG+TGG | - | chr6_2:27153-27172 | None:intergenic | 40.0% | |
| ! | AGGTTGTTTCACTTACTTGC+AGG | - | chr6_2:27156-27175 | None:intergenic | 40.0% |
| ! | TCCCTCGCTAAATTTTGTGA+CGG | - | chr6_2:27401-27420 | None:intergenic | 40.0% |
| TCCATGGTGAAATTTGAGAG+TGG | + | chr6_2:27567-27586 | Msa0902940:CDS | 40.0% | |
| ACCACTCTCAAATTTCACCA+TGG | - | chr6_2:27571-27590 | None:intergenic | 40.0% | |
| ATATGACTTTGCTTCGTGTC+CGG | + | chr6_2:28157-28176 | Msa0902940:intron | 40.0% | |
| TCACTTTCGAAAATGGATCC+TGG | - | chr6_2:28737-28756 | None:intergenic | 40.0% | |
| GGGTATATTGGACACATAGA+TGG | + | chr6_2:28967-28986 | Msa0902940:CDS | 40.0% | |
| CAAGACTGAACCATCCTAAA+GGG | + | chr6_2:29004-29023 | Msa0902940:CDS | 40.0% | |
| TCATCAACTGTAAGCCCTTT+AGG | - | chr6_2:29021-29040 | None:intergenic | 40.0% | |
| AAGCTGTCTTGGAGAGTTTA+TGG | - | chr6_2:29291-29310 | None:intergenic | 40.0% | |
| GAAAACTTTGCATCCTCACT+TGG | - | chr6_2:29747-29766 | None:intergenic | 40.0% | |
| ! | AAGTAGTTGCTCTCTTTTGG+TGG | + | chr6_2:29794-29813 | Msa0902940:CDS | 40.0% |
| ATTACTTAAGAGGAGGGTGA+CGG | + | chr6_2:30087-30106 | Msa0902940:CDS | 40.0% | |
| TTCTATACAATGACCCCTCA+GGG | + | chr6_2:30143-30162 | Msa0902940:intron | 40.0% | |
| ! | TTTTGACCCCTCAGATTAGT+CGG | + | chr6_2:30175-30194 | Msa0902940:intron | 40.0% |
| ! | AGATTAGTCGGCCCTAAAAT+TGG | + | chr6_2:30187-30206 | Msa0902940:intron | 40.0% |
| !!! | AGGGTTTTAAATGGTGGTCA+TGG | + | chr6_2:30236-30255 | Msa0902940:intron | 40.0% |
| CGCTGCAATCGTTAATATTG+CGG | + | chr6_2:30274-30293 | Msa0902940:intron | 40.0% | |
| TGAGGTTGCATCAATCACAT+TGG | - | chr6_2:30311-30330 | None:intergenic | 40.0% | |
| ! | AGGATTCAAGGGCACATATA+AGG | + | chr6_2:30454-30473 | Msa0902940:intron | 40.0% |
| AGGGCACATATAAGGACAAA+AGG | + | chr6_2:30462-30481 | Msa0902940:CDS | 40.0% | |
| CACCATTTGCATCACAACAA+AGG | + | chr6_2:30487-30506 | Msa0902940:CDS | 40.0% | |
| ! | AAAGGAGGCCTAACTGATTT+AGG | - | chr6_2:30519-30538 | None:intergenic | 40.0% |
| ! | GAAGGCTTCTTTGTTTCTCT+TGG | + | chr6_2:30573-30592 | Msa0902940:CDS | 40.0% |
| ! | TTCTTGCATTGGCCATGAAT+TGG | - | chr6_2:30742-30761 | None:intergenic | 40.0% |
| !! | GAAAGTTTTGTGATTCCGGA+CGG | + | chr6_2:30759-30778 | Msa0902940:CDS | 40.0% |
| GTTTGTCTATTTATCGGCAC+AGG | - | chr6_2:30918-30937 | None:intergenic | 40.0% | |
| TCAACAACCACAACATTCGA+AGG | + | chr6_2:31055-31074 | Msa0902940:CDS | 40.0% | |
| ! | GTGATAAAGGCTGTGGATTA+TGG | + | chr6_2:31191-31210 | Msa0902940:CDS | 40.0% |
| GTCACCATAATATTCGACCT+AGG | + | chr6_2:31228-31247 | Msa0902940:CDS | 40.0% | |
| TTTCACTTACTTGCAGGTGG+TGG | - | chr6_2:27150-27169 | None:intergenic | 45.0% | |
| ! | CCTCGCTAAATTTTGTGACG+GGG | - | chr6_2:27399-27418 | None:intergenic | 45.0% |
| ! | CCCTCGCTAAATTTTGTGAC+GGG | - | chr6_2:27400-27419 | None:intergenic | 45.0% |
| CCCGTCACAAAATTTAGCGA+GGG | + | chr6_2:27397-27416 | Msa0902940:intron | 45.0% | |
| AGTGCAACATAGTCGATCCA+TGG | + | chr6_2:27551-27570 | Msa0902940:intron | 45.0% | |
| TATGACTTTGCTTCGTGTCC+GGG | + | chr6_2:28158-28177 | Msa0902940:intron | 45.0% | |
| AGCAAACCAAAACTGCTTGC+TGG | + | chr6_2:28934-28953 | Msa0902940:CDS | 45.0% | |
| ! | GAAGATCCAGCAAGCAGTTT+TGG | - | chr6_2:28943-28962 | None:intergenic | 45.0% |
| ! | GGATCTTCTGACGGGTATAT+TGG | + | chr6_2:28955-28974 | Msa0902940:CDS | 45.0% |
| TGGTTCAGTCTTGCATCTCT+AGG | - | chr6_2:28997-29016 | None:intergenic | 45.0% | |
| GCAAGACTGAACCATCCTAA+AGG | + | chr6_2:29003-29022 | Msa0902940:CDS | 45.0% | |
| ! | CAACTGTAAGCCCTTTAGGA+TGG | - | chr6_2:29017-29036 | None:intergenic | 45.0% |
| ATAGGGGTAACAACCATTGC+AGG | + | chr6_2:29681-29700 | Msa0902940:intron | 45.0% | |
| ! | TCTTTTTCCTCCACCTGCAA+TGG | - | chr6_2:29697-29716 | None:intergenic | 45.0% |
| ATTGCAGGTGGAGGAAAAAG+AGG | + | chr6_2:29696-29715 | Msa0902940:CDS | 45.0% | |
| GGAGGAAAAAGAGGCCAATT+AGG | + | chr6_2:29705-29724 | Msa0902940:CDS | 45.0% | |
| GGAAAAAGAGGCCAATTAGG+AGG | + | chr6_2:29708-29727 | Msa0902940:CDS | 45.0% | |
| CATCAACATGGCCTCCTAAT+TGG | - | chr6_2:29722-29741 | None:intergenic | 45.0% | |
| CAATTAGGAGGCCATGTTGA+TGG | + | chr6_2:29720-29739 | Msa0902940:CDS | 45.0% | |
| ! | TAGTTGCTCTCTTTTGGTGG+TGG | + | chr6_2:29797-29816 | Msa0902940:CDS | 45.0% |
| !!! | TCTCTTTTGGTGGTGGATAG+AGG | + | chr6_2:29804-29823 | Msa0902940:CDS | 45.0% |
| !! | ATAGCTGCTCTTGTTTCTGC+TGG | + | chr6_2:30043-30062 | Msa0902940:CDS | 45.0% |
| CTTCTATACAATGACCCCTC+AGG | + | chr6_2:30142-30161 | Msa0902940:intron | 45.0% | |
| ! | TTTAGGGCCGACTAATCTGA+GGG | - | chr6_2:30185-30204 | None:intergenic | 45.0% |
| !!! | TTTTAGGGCCGACTAATCTG+AGG | - | chr6_2:30186-30205 | None:intergenic | 45.0% |
| GATTGATGCAACCTCAGAAG+CGG | + | chr6_2:30315-30334 | Msa0902940:intron | 45.0% | |
| AGAACTCAAGGTAGCGATCT+AGG | - | chr6_2:30384-30403 | None:intergenic | 45.0% | |
| ! | GGCCTTTGTTGTGATGCAAA+TGG | - | chr6_2:30492-30511 | None:intergenic | 45.0% |
| AGACGAACCACCTCCTAATA+TGG | + | chr6_2:30782-30801 | Msa0902940:CDS | 45.0% | |
| TGTCTATTTATCGGCACAGG+CGG | - | chr6_2:30915-30934 | None:intergenic | 45.0% | |
| CTTTGCACCTTCGAATGTTG+TGG | - | chr6_2:31065-31084 | None:intergenic | 45.0% | |
| GGTGCAGTTCAAGAACATGA+TGG | + | chr6_2:31152-31171 | Msa0902940:CDS | 45.0% | |
| ! | AGAACATGATGGAAGACGTG+AGG | + | chr6_2:31163-31182 | Msa0902940:CDS | 45.0% |
| ACGTGAGGCTATGGTGATAA+AGG | + | chr6_2:31178-31197 | Msa0902940:CDS | 45.0% | |
| CCCCGTCACAAAATTTAGCG+AGG | + | chr6_2:27396-27415 | Msa0902940:intron | 50.0% | |
| ! | CTGCTTGCTGGATCTTCTGA+CGG | + | chr6_2:28946-28965 | Msa0902940:CDS | 50.0% |
| ! | TGCTTGCTGGATCTTCTGAC+GGG | + | chr6_2:28947-28966 | Msa0902940:CDS | 50.0% |
| !! | GGGCTTACAGTTGATGACAG+TGG | + | chr6_2:29024-29043 | Msa0902940:CDS | 50.0% |
| GTAACAACCATTGCAGGTGG+AGG | + | chr6_2:29687-29706 | Msa0902940:CDS | 50.0% | |
| CCTCACTTGGACCATCAACA+TGG | - | chr6_2:29734-29753 | None:intergenic | 50.0% | |
| !! | CCATGTTGATGGTCCAAGTG+AGG | + | chr6_2:29731-29750 | Msa0902940:CDS | 50.0% |
| TTAGGGCCGACTAATCTGAG+GGG | - | chr6_2:30184-30203 | None:intergenic | 50.0% | |
| GGCCTCCTCCTAAATCAGTT+AGG | + | chr6_2:30508-30527 | Msa0902940:CDS | 50.0% | |
| ! | GGCCTAACTGATTTAGGAGG+AGG | - | chr6_2:30513-30532 | None:intergenic | 50.0% |
| ! | GGAGGCCTAACTGATTTAGG+AGG | - | chr6_2:30516-30535 | None:intergenic | 50.0% |
| TGATGGAAGACGTGAGGCTA+TGG | + | chr6_2:31169-31188 | Msa0902940:CDS | 50.0% | |
| GGCTATGGTGATAAAGGCTG+TGG | + | chr6_2:31184-31203 | Msa0902940:CDS | 50.0% | |
| ! | GGTGGTGGTGTAGCTGAAGT+TGG | - | chr6_2:27135-27154 | None:intergenic | 55.0% |
| GGGGTAACAACCATTGCAGG+TGG | + | chr6_2:29684-29703 | Msa0902940:intron | 55.0% | |
| CTATTTATCGGCACAGGCGG+AGG | - | chr6_2:30912-30931 | None:intergenic | 55.0% | |
| TGACAACGCAGCCGCTTCTG+AGG | - | chr6_2:30329-30348 | None:intergenic | 60.0% | |
| GGAGGTGGTTCGTCTCCGTC+CGG | - | chr6_2:30777-30796 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 26990 | 31445 | 26990 | ID=Msa0902940;Name=Msa0902940 |
| chr6_2 | mRNA | 26990 | 31445 | 26990 | ID=Msa0902940-mRNA-1;Parent=Msa0902940;Name=Msa0902940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|1|1|7|162|561 |
| chr6_2 | exon | 26990 | 27159 | 26990 | ID=Msa0902940-mRNA-1:exon:0;Parent=Msa0902940-mRNA-1 |
| chr6_2 | exon | 27249 | 27338 | 27249 | ID=Msa0902940-mRNA-1:exon:1;Parent=Msa0902940-mRNA-1 |
| chr6_2 | exon | 27553 | 27729 | 27553 | ID=Msa0902940-mRNA-1:exon:2;Parent=Msa0902940-mRNA-1 |
| chr6_2 | exon | 28932 | 29102 | 28932 | ID=Msa0902940-mRNA-1:exon:3;Parent=Msa0902940-mRNA-1 |
| chr6_2 | exon | 29685 | 29927 | 29685 | ID=Msa0902940-mRNA-1:exon:4;Parent=Msa0902940-mRNA-1 |
| chr6_2 | exon | 30041 | 30129 | 30041 | ID=Msa0902940-mRNA-1:exon:5;Parent=Msa0902940-mRNA-1 |
| chr6_2 | exon | 30456 | 31445 | 30456 | ID=Msa0902940-mRNA-1:exon:6;Parent=Msa0902940-mRNA-1 |
| chr6_2 | five_prime_UTR | 26990 | 27071 | 26990 | ID=Msa0902940-mRNA-1:five_prime_utr;Parent=Msa0902940-mRNA-1 |
| chr6_2 | CDS | 27072 | 27159 | 27072 | ID=Msa0902940-mRNA-1:cds;Parent=Msa0902940-mRNA-1 |
| chr6_2 | CDS | 27249 | 27338 | 27249 | ID=Msa0902940-mRNA-1:cds;Parent=Msa0902940-mRNA-1 |
| chr6_2 | CDS | 27553 | 27729 | 27553 | ID=Msa0902940-mRNA-1:cds;Parent=Msa0902940-mRNA-1 |
| chr6_2 | CDS | 28932 | 29102 | 28932 | ID=Msa0902940-mRNA-1:cds;Parent=Msa0902940-mRNA-1 |
| chr6_2 | CDS | 29685 | 29927 | 29685 | ID=Msa0902940-mRNA-1:cds;Parent=Msa0902940-mRNA-1 |
| chr6_2 | CDS | 30041 | 30129 | 30041 | ID=Msa0902940-mRNA-1:cds;Parent=Msa0902940-mRNA-1 |
| chr6_2 | CDS | 30456 | 31283 | 30456 | ID=Msa0902940-mRNA-1:cds;Parent=Msa0902940-mRNA-1 |
| chr6_2 | three_prime_UTR | 31284 | 31445 | 31284 | ID=Msa0902940-mRNA-1:three_prime_utr;Parent=Msa0902940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
